Query 016064
Match_columns 396
No_of_seqs 194 out of 1378
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1466 Translation initiation 100.0 1.1E-78 2.3E-83 571.7 26.8 307 90-396 4-313 (313)
2 TIGR00511 ribulose_e2b2 ribose 100.0 6.4E-69 1.4E-73 528.8 30.0 294 93-395 2-299 (301)
3 PRK08535 translation initiatio 100.0 5.4E-68 1.2E-72 524.3 29.0 297 90-395 4-304 (310)
4 PRK05720 mtnA methylthioribose 100.0 6E-67 1.3E-71 521.5 28.8 315 67-394 7-340 (344)
5 PRK05772 translation initiatio 100.0 3.1E-66 6.6E-71 517.8 29.7 319 67-388 20-355 (363)
6 TIGR00512 salvage_mtnA S-methy 100.0 2E-66 4.3E-71 514.8 27.8 299 73-384 10-331 (331)
7 COG1184 GCD2 Translation initi 100.0 5.8E-66 1.3E-70 501.7 30.5 288 101-396 11-301 (301)
8 TIGR00524 eIF-2B_rel eIF-2B al 100.0 4.9E-66 1.1E-70 508.4 27.9 283 91-384 2-303 (303)
9 PRK06036 translation initiatio 100.0 1.6E-65 3.5E-70 509.7 25.6 310 72-391 12-337 (339)
10 PRK08334 translation initiatio 100.0 8E-65 1.7E-69 505.5 29.8 315 67-388 18-347 (356)
11 PF01008 IF-2B: Initiation fac 100.0 9.9E-64 2.2E-68 486.0 24.0 272 111-384 5-282 (282)
12 PRK08335 translation initiatio 100.0 5E-63 1.1E-67 479.5 26.5 266 95-386 8-273 (275)
13 PRK06371 translation initiatio 100.0 1.6E-61 3.5E-66 478.3 23.9 292 68-390 17-327 (329)
14 COG0182 Predicted translation 100.0 8E-61 1.7E-65 463.9 24.4 305 73-387 14-337 (346)
15 KOG1467 Translation initiation 100.0 9E-60 2E-64 473.7 22.1 295 98-394 236-551 (556)
16 KOG1465 Translation initiation 100.0 1.6E-57 3.6E-62 435.8 30.5 297 99-395 14-346 (353)
17 KOG1468 Predicted translation 100.0 3.9E-54 8.4E-59 408.2 21.4 312 74-393 14-351 (354)
18 PRK06372 translation initiatio 100.0 1.4E-50 3.1E-55 387.9 21.4 219 144-388 34-252 (253)
19 PRK00702 ribose-5-phosphate is 97.8 0.00021 4.6E-09 68.1 12.0 118 200-332 5-127 (220)
20 PRK10434 srlR DNA-bindng trans 97.8 0.00036 7.9E-09 67.7 13.3 124 200-332 76-214 (256)
21 TIGR00021 rpiA ribose 5-phosph 97.8 0.00026 5.7E-09 67.4 11.7 116 202-332 2-123 (218)
22 cd01398 RPI_A RPI_A: Ribose 5- 97.8 0.00029 6.3E-09 66.7 11.5 117 202-332 2-123 (213)
23 PF00455 DeoRC: DeoR C termina 97.7 0.00067 1.4E-08 61.4 12.7 124 200-332 4-142 (161)
24 PRK09802 DNA-binding transcrip 97.6 0.0014 2.9E-08 64.3 13.7 123 200-331 91-228 (269)
25 PRK13509 transcriptional repre 97.5 0.0022 4.7E-08 62.1 13.1 122 200-332 78-213 (251)
26 PRK10906 DNA-binding transcrip 97.4 0.003 6.6E-08 61.2 13.8 143 200-380 76-233 (252)
27 PRK10411 DNA-binding transcrip 97.3 0.0091 2E-07 57.5 14.8 122 200-331 78-214 (240)
28 PRK10681 DNA-binding transcrip 96.8 0.018 4E-07 55.7 12.6 123 200-331 77-214 (252)
29 COG1349 GlpR Transcriptional r 96.7 0.027 5.9E-07 54.6 12.4 124 200-332 76-214 (253)
30 PLN02384 ribose-5-phosphate is 95.9 0.15 3.2E-06 50.0 12.8 118 202-332 36-158 (264)
31 PRK13978 ribose-5-phosphate is 95.1 0.38 8.2E-06 46.3 12.2 118 201-331 7-128 (228)
32 COG0120 RpiA Ribose 5-phosphat 92.3 2.1 4.6E-05 41.1 11.7 120 201-332 6-127 (227)
33 KOG0259 Tyrosine aminotransfer 92.0 1.3 2.8E-05 45.7 10.4 118 198-322 105-237 (447)
34 COG2057 AtoA Acyl CoA:acetate/ 91.4 0.9 1.9E-05 43.5 8.0 153 200-385 6-184 (225)
35 PRK14101 bifunctional glucokin 87.5 29 0.00062 38.1 17.2 45 244-289 520-564 (638)
36 PRK10886 DnaA initiator-associ 87.4 23 0.00051 33.1 14.2 39 281-326 107-145 (196)
37 KOG3075 Ribose 5-phosphate iso 86.6 4.9 0.00011 39.3 9.3 120 201-331 27-150 (261)
38 PF02254 TrkA_N: TrkA-N domain 86.5 2.6 5.7E-05 34.8 6.7 95 219-329 1-101 (116)
39 PRK11557 putative DNA-binding 86.0 16 0.00034 35.3 12.9 40 252-291 188-227 (278)
40 TIGR01437 selA_rel uncharacter 84.6 13 0.00028 37.6 11.9 136 180-322 26-184 (363)
41 PF01073 3Beta_HSD: 3-beta hyd 84.5 2.5 5.4E-05 41.4 6.5 105 221-328 2-118 (280)
42 PRK11337 DNA-binding transcrip 82.5 31 0.00067 33.6 13.3 45 246-290 194-238 (292)
43 TIGR03402 FeS_nifS cysteine de 81.7 31 0.00068 34.5 13.3 116 198-322 44-171 (379)
44 cd01989 STK_N The N-terminal d 81.5 17 0.00036 31.0 9.9 60 262-324 74-144 (146)
45 PLN02651 cysteine desulfurase 81.2 37 0.00081 33.9 13.6 117 198-322 45-173 (364)
46 cd01424 MGS_CPS_II Methylglyox 80.8 22 0.00047 29.6 10.0 93 217-325 2-103 (110)
47 TIGR01470 cysG_Nterm siroheme 80.7 9 0.0002 36.0 8.4 96 215-326 8-103 (205)
48 TIGR02326 transamin_PhnW 2-ami 79.9 36 0.00078 33.8 13.0 122 193-323 32-165 (363)
49 PRK02947 hypothetical protein; 79.6 61 0.0013 31.2 14.3 44 246-289 113-167 (246)
50 TIGR00273 iron-sulfur cluster- 79.5 41 0.00088 35.5 13.5 50 282-332 180-230 (432)
51 COG1737 RpiR Transcriptional r 79.2 46 0.00099 32.6 13.2 47 246-292 184-230 (281)
52 PRK01438 murD UDP-N-acetylmura 79.1 12 0.00026 39.2 9.6 72 215-291 15-86 (480)
53 PRK09496 trkA potassium transp 78.7 22 0.00047 36.7 11.3 62 210-273 199-261 (453)
54 TIGR03235 DNA_S_dndA cysteine 78.0 55 0.0012 32.3 13.6 102 215-322 59-173 (353)
55 PRK15116 sulfur acceptor prote 78.0 40 0.00086 33.2 12.2 118 204-331 19-161 (268)
56 PRK05613 O-acetylhomoserine am 77.8 22 0.00049 37.2 11.1 99 217-322 86-190 (437)
57 COG0426 FpaA Uncharacterized f 77.7 49 0.0011 34.5 13.2 143 186-331 183-343 (388)
58 PRK00025 lpxB lipid-A-disaccha 77.4 29 0.00063 34.5 11.4 93 217-326 187-289 (380)
59 PRK07582 cystathionine gamma-l 77.1 26 0.00057 35.5 11.1 96 215-322 65-167 (366)
60 PRK14106 murD UDP-N-acetylmura 76.6 18 0.00039 37.3 10.0 74 215-292 4-77 (450)
61 COG4635 HemG Flavodoxin [Energ 76.5 2.7 5.8E-05 38.6 3.3 75 248-324 8-86 (175)
62 PF05159 Capsule_synth: Capsul 75.8 12 0.00026 36.0 8.0 93 218-327 131-228 (269)
63 PRK15118 universal stress glob 75.6 35 0.00076 29.0 10.1 37 282-324 102-138 (144)
64 PF03853 YjeF_N: YjeF-related 75.5 44 0.00095 30.2 11.1 121 199-322 6-136 (169)
65 PF01113 DapB_N: Dihydrodipico 75.4 6 0.00013 34.0 5.1 96 218-327 2-101 (124)
66 cd00293 USP_Like Usp: Universa 75.4 40 0.00087 26.9 10.4 90 230-323 18-130 (130)
67 TIGR00474 selA seryl-tRNA(sec) 74.8 44 0.00096 35.3 12.4 111 210-324 132-252 (454)
68 PRK08133 O-succinylhomoserine 74.8 46 0.001 34.1 12.3 97 217-322 78-181 (390)
69 PRK07810 O-succinylhomoserine 74.7 43 0.00093 34.6 12.1 99 217-322 87-190 (403)
70 PRK15482 transcriptional regul 74.4 58 0.0013 31.6 12.4 39 253-291 196-234 (285)
71 PF10087 DUF2325: Uncharacteri 74.4 17 0.00036 29.8 7.3 59 258-323 15-81 (97)
72 PRK08134 O-acetylhomoserine am 74.1 42 0.0009 35.1 11.9 98 217-322 81-184 (433)
73 cd01494 AAT_I Aspartate aminot 74.1 53 0.0012 27.7 11.2 100 214-322 16-127 (170)
74 cd06454 KBL_like KBL_like; thi 74.0 44 0.00096 32.6 11.6 102 212-322 58-167 (349)
75 PRK13479 2-aminoethylphosphona 73.9 58 0.0013 32.3 12.6 118 196-323 37-167 (368)
76 cd00532 MGS-like MGS-like doma 73.6 43 0.00093 28.1 9.8 86 228-328 14-110 (112)
77 PLN02409 serine--glyoxylate am 73.5 67 0.0015 32.8 13.1 97 218-322 63-174 (401)
78 TIGR01140 L_thr_O3P_dcar L-thr 72.9 36 0.00079 33.6 10.7 99 215-322 64-163 (330)
79 PF05368 NmrA: NmrA-like famil 72.6 18 0.00038 33.6 8.0 99 219-325 1-102 (233)
80 cd00614 CGS_like CGS_like: Cys 72.2 42 0.00091 33.9 11.2 99 216-322 56-160 (369)
81 TIGR01979 sufS cysteine desulf 72.2 89 0.0019 31.4 13.6 104 216-323 81-195 (403)
82 PRK10874 cysteine sulfinate de 72.1 92 0.002 31.4 13.7 120 196-322 63-195 (401)
83 PRK07812 O-acetylhomoserine am 72.0 48 0.001 34.8 11.8 99 217-322 86-190 (436)
84 KOG3349 Predicted glycosyltran 72.0 6 0.00013 36.1 4.3 53 211-267 76-128 (170)
85 PF02142 MGS: MGS-like domain 71.2 6 0.00013 32.3 3.9 78 229-321 3-94 (95)
86 PRK05968 hypothetical protein; 70.8 70 0.0015 32.7 12.5 98 217-322 80-182 (389)
87 TIGR02006 IscS cysteine desulf 70.7 1.1E+02 0.0025 31.0 14.0 117 198-322 49-177 (402)
88 TIGR03392 FeS_syn_CsdA cystein 70.6 1.2E+02 0.0025 30.7 14.0 120 196-322 60-192 (398)
89 PRK11302 DNA-binding transcrip 70.5 1E+02 0.0022 29.7 13.0 45 245-290 181-225 (284)
90 PRK08574 cystathionine gamma-s 70.4 53 0.0011 33.7 11.5 98 216-322 69-172 (385)
91 cd00287 ribokinase_pfkB_like r 70.2 16 0.00035 32.4 6.9 67 241-324 25-91 (196)
92 PLN02778 3,5-epimerase/4-reduc 69.8 23 0.00049 34.7 8.4 86 240-326 8-111 (298)
93 TIGR03127 RuMP_HxlB 6-phospho 69.8 52 0.0011 29.5 10.2 37 255-291 88-124 (179)
94 PF01488 Shikimate_DH: Shikima 69.6 19 0.00041 31.2 6.9 73 215-291 11-83 (135)
95 PRK04311 selenocysteine syntha 69.5 95 0.0021 33.0 13.4 111 210-324 137-257 (464)
96 PRK09295 bifunctional cysteine 69.3 1.1E+02 0.0024 31.0 13.6 120 196-322 67-199 (406)
97 PLN02260 probable rhamnose bio 69.3 21 0.00046 39.0 8.9 90 239-329 378-485 (668)
98 PRK09932 glycerate kinase II; 69.2 10 0.00022 39.3 5.9 63 254-330 267-329 (381)
99 cd06451 AGAT_like Alanine-glyo 69.2 1.2E+02 0.0026 29.8 13.8 97 218-322 53-159 (356)
100 PRK13520 L-tyrosine decarboxyl 68.9 80 0.0017 31.1 12.2 100 216-322 77-186 (371)
101 PRK08248 O-acetylhomoserine am 68.8 40 0.00088 35.2 10.4 98 216-322 80-184 (431)
102 cd05005 SIS_PHI Hexulose-6-pho 68.6 57 0.0012 29.3 10.2 34 256-289 92-125 (179)
103 COG1929 Glycerate kinase [Carb 68.4 9.6 0.00021 39.2 5.4 52 277-330 278-329 (378)
104 TIGR01329 cysta_beta_ly_E cyst 68.2 70 0.0015 32.6 11.8 99 216-323 63-167 (378)
105 PLN03209 translocon at the inn 68.1 18 0.0004 39.4 7.8 111 214-327 78-209 (576)
106 PF00535 Glycos_transf_2: Glyc 67.9 17 0.00037 30.3 6.3 81 218-298 3-94 (169)
107 PLN02206 UDP-glucuronate decar 67.5 23 0.00049 37.2 8.2 109 215-327 118-235 (442)
108 PRK05678 succinyl-CoA syntheta 67.3 43 0.00093 33.4 9.7 102 217-320 67-172 (291)
109 cd00611 PSAT_like Phosphoserin 67.1 95 0.0021 31.1 12.4 115 193-322 41-168 (355)
110 PRK05839 hypothetical protein; 67.1 67 0.0015 32.3 11.4 105 213-322 81-193 (374)
111 PRK05443 polyphosphate kinase; 66.2 17 0.00037 40.6 7.3 56 218-273 372-429 (691)
112 PF02844 GARS_N: Phosphoribosy 66.0 5.5 0.00012 33.6 2.7 85 218-321 2-90 (100)
113 PRK13936 phosphoheptose isomer 66.0 1.1E+02 0.0024 28.2 13.4 35 256-290 128-165 (197)
114 PTZ00433 tyrosine aminotransfe 65.7 65 0.0014 32.9 11.1 103 213-322 102-215 (412)
115 PF04016 DUF364: Domain of unk 65.6 24 0.00052 31.4 6.9 96 213-332 8-103 (147)
116 COG1091 RfbD dTDP-4-dehydrorha 65.6 31 0.00067 34.3 8.3 104 219-341 3-118 (281)
117 TIGR01325 O_suc_HS_sulf O-succ 65.5 97 0.0021 31.5 12.3 97 217-322 71-174 (380)
118 COG1104 NifS Cysteine sulfinat 65.2 45 0.00097 34.7 9.6 114 198-322 46-176 (386)
119 COG1737 RpiR Transcriptional r 65.2 1.4E+02 0.0031 29.2 16.8 65 255-326 145-213 (281)
120 cd06453 SufS_like Cysteine des 65.0 1.5E+02 0.0032 29.4 13.2 102 216-323 62-175 (373)
121 PRK13938 phosphoheptose isomer 64.8 1.2E+02 0.0027 28.3 12.1 44 246-289 120-163 (196)
122 cd01423 MGS_CPS_I_III Methylgl 64.7 21 0.00046 29.9 6.1 77 228-322 15-106 (116)
123 PRK05958 8-amino-7-oxononanoat 64.4 1.5E+02 0.0033 29.2 13.7 102 212-322 96-203 (385)
124 COG0424 Maf Nucleotide-binding 64.2 21 0.00046 33.6 6.5 79 223-312 9-92 (193)
125 TIGR01324 cysta_beta_ly_B cyst 64.1 86 0.0019 32.1 11.5 94 217-322 67-170 (377)
126 smart00851 MGS MGS-like domain 63.9 62 0.0013 25.8 8.5 70 240-321 12-89 (90)
127 cd01988 Na_H_Antiporter_C The 63.6 81 0.0018 25.8 11.1 60 261-323 64-131 (132)
128 cd01987 USP_OKCHK USP domain i 63.6 71 0.0015 26.2 9.1 90 231-323 19-123 (124)
129 PRK05234 mgsA methylglyoxal sy 63.5 48 0.001 29.5 8.4 88 228-326 19-115 (142)
130 CHL00144 odpB pyruvate dehydro 63.4 49 0.0011 33.4 9.5 74 253-331 214-299 (327)
131 PRK05764 aspartate aminotransf 63.4 82 0.0018 31.6 11.2 103 213-322 89-202 (393)
132 PF00266 Aminotran_5: Aminotra 63.2 73 0.0016 31.8 10.7 118 197-322 44-174 (371)
133 TIGR01019 sucCoAalpha succinyl 63.1 47 0.001 33.0 9.1 103 217-321 65-171 (286)
134 TIGR03590 PseG pseudaminic aci 63.0 69 0.0015 31.2 10.2 91 216-324 171-267 (279)
135 PRK06702 O-acetylhomoserine am 63.0 94 0.002 32.7 11.8 95 217-322 78-182 (432)
136 TIGR00853 pts-lac PTS system, 62.8 52 0.0011 27.1 7.9 57 259-324 24-82 (95)
137 PRK07568 aspartate aminotransf 62.7 91 0.002 31.3 11.4 102 214-322 87-200 (397)
138 cd00757 ThiF_MoeB_HesA_family 62.7 1.1E+02 0.0024 28.9 11.3 110 205-324 11-143 (228)
139 PRK06084 O-acetylhomoserine am 62.1 82 0.0018 32.8 11.1 97 217-322 75-178 (425)
140 PLN02656 tyrosine transaminase 61.6 1.2E+02 0.0027 30.8 12.3 103 213-322 94-207 (409)
141 PRK12475 thiamine/molybdopteri 61.5 85 0.0018 31.8 10.8 111 204-324 13-148 (338)
142 PRK01710 murD UDP-N-acetylmura 61.4 60 0.0013 33.9 10.1 92 216-321 14-105 (458)
143 TIGR01326 OAH_OAS_sulfhy OAH/O 61.3 1.2E+02 0.0025 31.4 12.1 98 216-322 73-177 (418)
144 PRK05690 molybdopterin biosynt 61.0 1.3E+02 0.0028 29.0 11.5 109 205-323 22-153 (245)
145 PRK12454 carbamate kinase-like 61.0 1.3E+02 0.0029 30.4 11.9 49 275-323 176-232 (313)
146 TIGR01977 am_tr_V_EF2568 cyste 60.9 1.8E+02 0.0038 28.8 13.4 98 217-322 64-172 (376)
147 PRK11543 gutQ D-arabinose 5-ph 60.7 1.4E+02 0.0031 29.3 12.1 38 253-290 103-140 (321)
148 COG5016 Pyruvate/oxaloacetate 60.6 38 0.00082 35.6 8.0 121 201-324 71-206 (472)
149 TIGR00045 glycerate kinase. Th 60.5 19 0.00041 37.3 5.9 52 277-330 277-328 (375)
150 PF00670 AdoHcyase_NAD: S-aden 59.7 44 0.00095 30.6 7.6 86 210-307 17-112 (162)
151 PTZ00187 succinyl-CoA syntheta 59.7 35 0.00076 34.5 7.6 101 217-321 90-197 (317)
152 PRK10342 glycerate kinase I; P 59.3 21 0.00045 37.1 6.0 63 254-330 267-329 (381)
153 KOG1538 Uncharacterized conser 59.3 73 0.0016 35.6 10.2 22 57-78 577-598 (1081)
154 PLN02828 formyltetrahydrofolat 59.2 45 0.00099 32.9 8.1 73 217-290 73-154 (268)
155 PRK09331 Sep-tRNA:Cys-tRNA syn 58.2 1E+02 0.0022 31.2 10.9 93 216-322 79-193 (387)
156 PRK08249 cystathionine gamma-s 57.9 1E+02 0.0023 31.7 10.9 98 217-322 81-184 (398)
157 PRK07503 methionine gamma-lyas 57.8 1.2E+02 0.0026 31.2 11.4 98 217-322 82-185 (403)
158 TIGR03576 pyridox_MJ0158 pyrid 57.7 1.6E+02 0.0036 29.6 12.2 135 181-322 36-173 (346)
159 PRK07179 hypothetical protein; 57.6 1.3E+02 0.0027 30.7 11.5 101 212-322 111-216 (407)
160 PLN02695 GDP-D-mannose-3',5'-e 56.8 54 0.0012 33.2 8.5 107 212-326 17-137 (370)
161 PRK14364 Maf-like protein; Pro 56.6 33 0.00071 31.8 6.3 72 239-320 16-95 (181)
162 COG0794 GutQ Predicted sugar p 56.1 1.6E+02 0.0035 28.0 10.9 98 184-289 13-136 (202)
163 PRK00048 dihydrodipicolinate r 55.9 54 0.0012 31.7 8.0 87 218-323 3-90 (257)
164 COG0074 SucD Succinyl-CoA synt 55.8 42 0.00092 33.5 7.2 91 217-309 67-159 (293)
165 cd04235 AAK_CK AAK_CK: Carbama 55.8 2.2E+02 0.0048 28.7 12.5 50 275-324 172-229 (308)
166 PRK09028 cystathionine beta-ly 55.7 1.3E+02 0.0028 31.2 11.2 94 217-322 78-181 (394)
167 TIGR00639 PurN phosphoribosylg 55.7 77 0.0017 29.5 8.7 69 218-289 4-85 (190)
168 TIGR01328 met_gam_lyase methio 55.7 1.5E+02 0.0033 30.3 11.7 98 217-322 76-179 (391)
169 PRK13527 glutamine amidotransf 55.3 33 0.00071 31.7 6.2 83 241-328 2-88 (200)
170 PF04392 ABC_sub_bind: ABC tra 55.3 13 0.00028 36.3 3.6 40 280-326 181-220 (294)
171 PLN02214 cinnamoyl-CoA reducta 55.1 93 0.002 30.9 9.8 108 215-324 9-125 (342)
172 PRK06108 aspartate aminotransf 55.1 1.5E+02 0.0033 29.4 11.4 96 213-322 82-196 (382)
173 PRK12320 hypothetical protein; 55.0 36 0.00079 38.1 7.4 99 218-326 2-103 (699)
174 cd05006 SIS_GmhA Phosphoheptos 55.0 1.6E+02 0.0034 26.4 11.7 46 246-291 108-153 (177)
175 PRK00414 gmhA phosphoheptose i 54.9 1.8E+02 0.0038 26.9 12.7 44 246-289 118-161 (192)
176 PRK06836 aspartate aminotransf 54.9 1.5E+02 0.0033 29.9 11.5 103 213-322 94-212 (394)
177 PRK13937 phosphoheptose isomer 54.8 1.7E+02 0.0037 26.7 12.6 35 256-290 123-157 (188)
178 PRK10116 universal stress prot 54.8 1.3E+02 0.0028 25.3 9.8 37 282-323 101-137 (142)
179 CHL00194 ycf39 Ycf39; Provisio 54.6 88 0.0019 30.6 9.5 102 218-326 2-110 (317)
180 cd01485 E1-1_like Ubiquitin ac 54.6 1.3E+02 0.0027 28.0 10.0 109 206-324 10-145 (198)
181 PRK05939 hypothetical protein; 54.5 1.4E+02 0.0031 30.7 11.3 94 217-322 64-166 (397)
182 PF08032 SpoU_sub_bind: RNA 2' 54.2 52 0.0011 25.0 6.2 51 231-281 7-58 (76)
183 PRK07865 N-succinyldiaminopime 53.7 1E+02 0.0022 30.7 9.9 94 213-322 84-186 (364)
184 PF03709 OKR_DC_1_N: Orn/Lys/A 53.6 21 0.00046 30.2 4.3 67 256-327 7-77 (115)
185 cd06450 DOPA_deC_like DOPA dec 53.5 2.2E+02 0.0048 27.7 12.1 100 216-322 58-183 (345)
186 PRK07050 cystathionine beta-ly 53.4 2.3E+02 0.0049 29.1 12.6 98 217-322 82-185 (394)
187 PRK05562 precorrin-2 dehydroge 53.3 1.1E+02 0.0025 29.3 9.6 95 215-325 24-118 (223)
188 COG0451 WcaG Nucleoside-diphos 52.4 48 0.001 31.6 7.1 101 219-326 3-116 (314)
189 TIGR03492 conserved hypothetic 52.4 1.6E+02 0.0034 30.4 11.2 93 215-324 204-322 (396)
190 PRK05647 purN phosphoribosylgl 52.3 75 0.0016 29.7 8.1 76 218-296 5-94 (200)
191 PRK12452 cardiolipin synthetas 52.1 93 0.002 33.4 9.7 96 196-309 343-445 (509)
192 cd05212 NAD_bind_m-THF_DH_Cycl 52.1 58 0.0013 28.9 6.9 43 249-291 35-79 (140)
193 PF02595 Gly_kinase: Glycerate 52.1 17 0.00036 37.7 3.9 52 277-330 278-329 (377)
194 PRK14361 Maf-like protein; Pro 51.9 71 0.0015 29.8 7.8 75 239-322 18-98 (187)
195 cd00609 AAT_like Aspartate ami 51.7 99 0.0022 29.6 9.2 102 215-323 59-171 (350)
196 PRK08064 cystathionine beta-ly 51.4 2.1E+02 0.0045 29.3 11.9 97 217-322 71-173 (390)
197 PRK05994 O-acetylhomoserine am 51.4 2.2E+02 0.0047 29.6 12.2 97 217-322 80-183 (427)
198 PRK06234 methionine gamma-lyas 51.3 2.1E+02 0.0046 29.4 11.9 98 217-322 81-186 (400)
199 cd00613 GDC-P Glycine cleavage 51.3 2.3E+02 0.0049 28.3 12.0 99 217-322 83-194 (398)
200 PRK06225 aspartate aminotransf 51.3 1.4E+02 0.003 29.9 10.5 102 214-322 82-195 (380)
201 TIGR01822 2am3keto_CoA 2-amino 51.1 1.4E+02 0.003 29.9 10.4 16 307-322 190-205 (393)
202 TIGR03539 DapC_actino succinyl 51.1 1.2E+02 0.0026 30.2 9.9 94 213-322 78-180 (357)
203 PLN02166 dTDP-glucose 4,6-dehy 50.8 75 0.0016 33.2 8.6 108 215-326 119-235 (436)
204 PRK08056 threonine-phosphate d 50.5 2.6E+02 0.0056 27.8 12.2 93 214-322 71-180 (356)
205 TIGR03538 DapC_gpp succinyldia 50.5 1.7E+02 0.0036 29.6 10.9 100 217-321 92-202 (393)
206 PLN02187 rooty/superroot1 50.3 2.1E+02 0.0047 29.9 12.0 103 213-322 129-242 (462)
207 PLN02331 phosphoribosylglycina 50.2 1.1E+02 0.0023 29.1 8.7 73 218-294 3-90 (207)
208 PRK05597 molybdopterin biosynt 50.0 2.5E+02 0.0053 28.6 12.0 109 205-323 18-149 (355)
209 PRK03244 argD acetylornithine 49.7 1.9E+02 0.0041 29.2 11.2 102 216-322 104-222 (398)
210 TIGR02371 ala_DH_arch alanine 49.7 74 0.0016 31.9 8.1 96 210-308 120-225 (325)
211 PRK07324 transaminase; Validat 49.4 1.5E+02 0.0033 29.8 10.4 102 214-322 79-191 (373)
212 PF01380 SIS: SIS domain SIS d 49.3 1.1E+02 0.0023 25.3 7.9 46 246-291 60-105 (131)
213 PRK04425 Maf-like protein; Rev 49.2 1.4E+02 0.0031 28.0 9.4 89 223-323 11-106 (196)
214 PRK14012 cysteine desulfurase; 49.0 3E+02 0.0065 27.9 12.8 101 217-322 68-179 (404)
215 PRK07309 aromatic amino acid a 49.0 2.1E+02 0.0047 28.8 11.5 101 215-322 91-204 (391)
216 PRK13111 trpA tryptophan synth 48.8 2.5E+02 0.0053 27.5 11.3 106 217-324 92-207 (258)
217 cd06436 GlcNAc-1-P_transferase 48.8 63 0.0014 29.0 6.8 32 219-250 3-34 (191)
218 PLN02683 pyruvate dehydrogenas 48.7 1E+02 0.0022 31.6 9.0 64 256-324 244-319 (356)
219 PRK09987 dTDP-4-dehydrorhamnos 48.6 1.1E+02 0.0023 29.9 8.9 29 301-329 80-108 (299)
220 cd00610 OAT_like Acetyl ornith 48.6 2.3E+02 0.005 28.4 11.7 104 215-322 96-230 (413)
221 PRK08912 hypothetical protein; 48.6 2.6E+02 0.0056 28.0 12.0 92 217-322 89-197 (387)
222 PRK07681 aspartate aminotransf 48.5 1.7E+02 0.0037 29.6 10.6 99 216-322 94-204 (399)
223 TIGR03705 poly_P_kin polyphosp 48.5 43 0.00093 37.3 6.6 52 222-273 367-420 (672)
224 PRK09191 two-component respons 48.4 1.5E+02 0.0032 27.5 9.6 93 226-325 119-218 (261)
225 TIGR00858 bioF 8-amino-7-oxono 48.4 2.7E+02 0.0058 27.1 12.4 93 216-322 77-181 (360)
226 PF13090 PP_kinase_C: Polyphos 48.3 15 0.00033 37.5 2.9 51 223-274 47-100 (352)
227 COG1648 CysG Siroheme synthase 48.2 78 0.0017 30.0 7.6 96 215-326 11-106 (210)
228 PRK02948 cysteine desulfurase; 48.1 2.9E+02 0.0064 27.5 13.0 117 199-322 46-173 (381)
229 PRK12381 bifunctional succinyl 48.0 1.7E+02 0.0036 30.0 10.6 103 216-322 97-222 (406)
230 PF13241 NAD_binding_7: Putati 47.9 35 0.00076 28.1 4.6 87 215-324 6-92 (103)
231 PRK08361 aspartate aminotransf 47.8 2.1E+02 0.0046 28.7 11.2 103 213-322 91-204 (391)
232 PRK06460 hypothetical protein; 47.8 2.8E+02 0.006 28.2 12.1 58 260-322 103-165 (376)
233 PLN02855 Bifunctional selenocy 47.0 3.3E+02 0.0071 27.8 13.4 117 198-322 78-208 (424)
234 PRK07523 gluconate 5-dehydroge 47.0 87 0.0019 29.1 7.8 108 215-326 9-146 (255)
235 PRK05967 cystathionine beta-ly 46.9 2.4E+02 0.0051 29.3 11.5 98 217-322 81-184 (395)
236 PRK07683 aminotransferase A; V 46.8 2.5E+02 0.0055 28.2 11.6 100 217-322 91-199 (387)
237 PTZ00182 3-methyl-2-oxobutanat 46.7 1.4E+02 0.003 30.5 9.7 69 257-330 250-330 (355)
238 PF04321 RmlD_sub_bind: RmlD s 46.5 33 0.00073 33.4 5.0 98 217-332 1-108 (286)
239 PRK00726 murG undecaprenyldiph 46.3 2.3E+02 0.0051 27.7 11.1 93 216-325 183-280 (357)
240 PRK08618 ornithine cyclodeamin 46.0 1.7E+02 0.0037 29.2 10.1 90 215-307 126-223 (325)
241 PRK08045 cystathionine gamma-s 45.9 2.4E+02 0.0051 28.9 11.3 98 217-322 69-172 (386)
242 PRK00032 Maf-like protein; Rev 45.9 1.1E+02 0.0023 28.7 8.0 87 223-322 8-103 (190)
243 PRK08247 cystathionine gamma-s 45.8 2.8E+02 0.006 28.0 11.7 92 218-322 70-171 (366)
244 PRK07550 hypothetical protein; 45.7 2.3E+02 0.005 28.4 11.1 102 213-322 88-201 (386)
245 TIGR03458 YgfH_subfam succinat 45.7 1.3E+02 0.0029 32.2 9.6 116 207-324 6-156 (485)
246 PRK03369 murD UDP-N-acetylmura 45.7 1.3E+02 0.0027 31.9 9.5 90 214-322 10-99 (488)
247 TIGR02080 O_succ_thio_ly O-suc 45.7 2.5E+02 0.0054 28.7 11.4 98 217-322 68-171 (382)
248 TIGR03301 PhnW-AepZ 2-aminoeth 45.7 2.9E+02 0.0063 26.8 12.3 98 218-323 53-161 (355)
249 cd01483 E1_enzyme_family Super 45.6 1.3E+02 0.0029 25.7 8.2 98 219-325 2-122 (143)
250 PRK00148 Maf-like protein; Rev 45.4 1E+02 0.0022 28.8 7.8 74 239-322 20-101 (194)
251 PRK00207 sulfur transfer compl 45.3 39 0.00085 29.4 4.7 72 245-328 5-83 (128)
252 PRK15005 universal stress prot 45.2 74 0.0016 26.8 6.4 37 282-323 106-143 (144)
253 PF04198 Sugar-bind: Putative 45.1 2.2E+02 0.0048 27.5 10.4 84 212-296 49-157 (255)
254 PLN02896 cinnamyl-alcohol dehy 45.0 2.2E+02 0.0047 28.2 10.7 108 215-326 9-138 (353)
255 PRK07765 para-aminobenzoate sy 44.9 1.2E+02 0.0026 28.5 8.3 77 243-326 2-85 (214)
256 TIGR02356 adenyl_thiF thiazole 44.7 2.2E+02 0.0048 26.3 10.0 110 205-324 11-143 (202)
257 TIGR02428 pcaJ_scoB_fam 3-oxoa 44.6 1E+02 0.0022 29.1 7.7 94 202-301 3-112 (207)
258 cd01492 Aos1_SUMO Ubiquitin ac 44.6 1.9E+02 0.0041 26.8 9.5 110 205-324 11-142 (197)
259 PRK00078 Maf-like protein; Rev 44.5 1.1E+02 0.0024 28.6 7.8 89 224-322 8-104 (192)
260 PF08659 KR: KR domain; Inter 44.4 2.2E+02 0.0047 25.6 9.7 107 219-327 4-137 (181)
261 PRK07504 O-succinylhomoserine 44.4 2.7E+02 0.006 28.5 11.5 96 219-322 84-185 (398)
262 PRK09590 celB cellobiose phosp 44.3 1.3E+02 0.0028 25.4 7.5 56 260-324 23-82 (104)
263 PRK10537 voltage-gated potassi 44.3 2.9E+02 0.0064 28.7 11.7 93 216-327 240-339 (393)
264 PRK11263 cardiolipin synthase 44.2 76 0.0016 33.1 7.4 49 225-274 47-96 (411)
265 cd06502 TA_like Low-specificit 44.1 2.2E+02 0.0048 27.5 10.4 103 214-322 46-164 (338)
266 PF00582 Usp: Universal stress 44.0 1.6E+02 0.0036 23.4 10.0 39 282-323 101-139 (140)
267 cd01748 GATase1_IGP_Synthase T 44.0 81 0.0017 28.9 6.9 70 256-328 12-82 (198)
268 PRK00414 gmhA phosphoheptose i 43.9 1.4E+02 0.0031 27.5 8.5 39 281-326 109-147 (192)
269 TIGR01133 murG undecaprenyldip 43.8 1.7E+02 0.0037 28.4 9.5 91 216-323 179-276 (348)
270 PRK13143 hisH imidazole glycer 43.8 1.2E+02 0.0026 28.1 8.0 81 243-329 2-83 (200)
271 PRK05957 aspartate aminotransf 43.7 3.1E+02 0.0067 27.6 11.7 93 216-322 90-198 (389)
272 COG2014 Uncharacterized conser 43.7 1.3E+02 0.0029 29.0 8.1 96 210-332 107-205 (250)
273 PF13580 SIS_2: SIS domain; PD 43.6 45 0.00097 29.0 4.8 28 213-240 101-131 (138)
274 PRK11892 pyruvate dehydrogenas 43.6 1.4E+02 0.0031 31.7 9.4 72 253-329 353-436 (464)
275 PRK04694 Maf-like protein; Rev 43.5 1.1E+02 0.0023 28.7 7.5 77 239-322 19-104 (190)
276 PRK06348 aspartate aminotransf 43.5 2.3E+02 0.005 28.5 10.7 103 213-322 87-200 (384)
277 PRK06141 ornithine cyclodeamin 43.5 1.8E+02 0.0039 28.9 9.7 91 214-307 123-221 (314)
278 cd00555 Maf Nucleotide binding 43.4 68 0.0015 29.6 6.2 81 229-322 11-100 (180)
279 PRK13566 anthranilate synthase 43.3 88 0.0019 35.2 8.1 80 239-325 524-606 (720)
280 TIGR01264 tyr_amTase_E tyrosin 43.2 2.5E+02 0.0054 28.3 10.9 103 213-322 93-206 (401)
281 cd01974 Nitrogenase_MoFe_beta 43.0 4.1E+02 0.0089 27.7 16.9 94 215-324 302-402 (435)
282 TIGR03537 DapC succinyldiamino 42.9 2.6E+02 0.0056 27.7 10.8 97 214-322 58-174 (350)
283 PRK13789 phosphoribosylamine-- 42.8 41 0.00089 35.1 5.2 76 217-297 5-82 (426)
284 PRK06767 methionine gamma-lyas 42.5 2.9E+02 0.0063 28.1 11.3 98 217-322 78-181 (386)
285 PRK10892 D-arabinose 5-phospha 42.5 3.4E+02 0.0075 26.7 12.7 36 256-291 111-146 (326)
286 PF08484 Methyltransf_14: C-me 42.5 49 0.0011 30.0 5.0 66 192-258 44-109 (160)
287 TIGR01963 PHB_DH 3-hydroxybuty 42.4 1.3E+02 0.0027 27.7 8.0 104 217-324 2-135 (255)
288 COG0373 HemA Glutamyl-tRNA red 42.4 1.9E+02 0.0042 30.4 10.0 70 215-291 177-246 (414)
289 PRK14368 Maf-like protein; Pro 42.3 1E+02 0.0023 28.8 7.3 87 223-322 11-105 (193)
290 PRK14367 Maf-like protein; Pro 42.3 1.3E+02 0.0028 28.3 8.0 77 239-322 21-109 (202)
291 PF01408 GFO_IDH_MocA: Oxidore 42.2 1.9E+02 0.0041 23.5 9.8 87 218-322 2-91 (120)
292 PRK04056 Maf-like protein; Rev 42.1 1.5E+02 0.0033 27.4 8.3 77 239-323 19-102 (180)
293 KOG1549 Cysteine desulfurase N 42.1 2.3E+02 0.0049 30.0 10.4 118 198-322 87-216 (428)
294 cd00956 Transaldolase_FSA Tran 42.1 1.2E+02 0.0025 28.7 7.7 98 225-328 60-166 (211)
295 PRK05973 replicative DNA helic 42.1 1.1E+02 0.0023 29.6 7.6 114 212-329 60-195 (237)
296 TIGR00036 dapB dihydrodipicoli 42.0 2.1E+02 0.0046 27.8 9.8 97 218-326 3-101 (266)
297 COG0771 MurD UDP-N-acetylmuram 41.8 1E+02 0.0022 32.7 8.0 91 216-321 7-97 (448)
298 PRK07340 ornithine cyclodeamin 41.7 1.8E+02 0.0038 28.9 9.3 89 215-307 124-219 (304)
299 TIGR01825 gly_Cac_T_rel pyrido 41.7 2.1E+02 0.0045 28.4 10.0 97 217-322 95-198 (385)
300 cd00615 Orn_deC_like Ornithine 41.6 3.3E+02 0.0073 26.3 11.7 95 217-322 76-188 (294)
301 PRK15181 Vi polysaccharide bio 41.5 1.1E+02 0.0024 30.3 8.0 108 215-324 14-140 (348)
302 TIGR02355 moeB molybdopterin s 41.5 2.9E+02 0.0063 26.5 10.5 106 209-324 18-146 (240)
303 PRK09147 succinyldiaminopimela 41.4 2.4E+02 0.0052 28.4 10.5 101 217-322 92-204 (396)
304 TIGR03609 S_layer_CsaB polysac 41.4 78 0.0017 30.7 6.7 52 276-327 57-109 (298)
305 cd01491 Ube1_repeat1 Ubiquitin 41.4 1.5E+02 0.0033 29.4 8.7 106 208-324 12-137 (286)
306 PRK07688 thiamine/molybdopteri 41.1 4E+02 0.0086 27.0 11.9 109 205-324 14-148 (339)
307 PRK10310 PTS system galactitol 41.1 1.2E+02 0.0026 24.8 6.7 54 218-292 4-59 (94)
308 COG1519 KdtA 3-deoxy-D-manno-o 41.0 1E+02 0.0022 32.4 7.6 95 228-332 247-357 (419)
309 cd02525 Succinoglycan_BP_ExoA 41.0 1E+02 0.0022 28.0 7.0 56 218-273 5-63 (249)
310 cd05017 SIS_PGI_PMI_1 The memb 40.9 92 0.002 26.0 6.3 57 212-276 40-100 (119)
311 COG3844 Kynureninase [Amino ac 40.7 2.5E+02 0.0055 29.0 10.1 97 203-299 79-181 (407)
312 PRK14852 hypothetical protein; 40.6 3.6E+02 0.0079 31.6 12.5 115 203-325 320-457 (989)
313 PRK15062 hydrogenase isoenzyme 40.6 96 0.0021 32.1 7.2 49 273-324 171-219 (364)
314 PRK08063 enoyl-(acyl carrier p 40.2 1.3E+02 0.0028 27.7 7.7 97 216-315 4-126 (250)
315 TIGR01777 yfcH conserved hypot 40.0 94 0.002 29.2 6.9 98 219-325 1-111 (292)
316 cd06433 GT_2_WfgS_like WfgS an 39.9 1.6E+02 0.0035 25.3 7.9 85 218-302 3-95 (202)
317 PRK15029 arginine decarboxylas 39.9 1.3E+02 0.0027 34.2 8.7 83 243-328 2-96 (755)
318 COG2390 DeoR Transcriptional r 39.8 2.7E+02 0.0059 28.2 10.3 88 211-299 110-223 (321)
319 PRK10637 cysG siroheme synthas 39.7 1.3E+02 0.0028 31.8 8.4 95 215-325 11-105 (457)
320 PRK07811 cystathionine gamma-s 39.7 1.9E+02 0.0042 29.5 9.5 96 219-322 80-181 (388)
321 PRK06207 aspartate aminotransf 39.7 3.6E+02 0.0079 27.4 11.6 100 216-322 103-216 (405)
322 PRK08300 acetaldehyde dehydrog 39.7 2.1E+02 0.0046 28.7 9.5 97 217-327 5-104 (302)
323 TIGR03693 ocin_ThiF_like putat 39.6 5.4E+02 0.012 28.7 13.1 100 215-322 128-236 (637)
324 cd05564 PTS_IIB_chitobiose_lic 39.5 1E+02 0.0022 25.3 6.1 57 259-324 20-78 (96)
325 cd00755 YgdL_like Family of ac 39.5 2.3E+02 0.005 27.1 9.4 114 208-331 4-142 (231)
326 cd01493 APPBP1_RUB Ubiquitin a 39.4 3E+02 0.0064 29.0 10.9 110 205-324 10-144 (425)
327 PRK08223 hypothetical protein; 39.2 4.1E+02 0.0088 26.6 12.0 111 205-323 17-150 (287)
328 PRK15456 universal stress prot 39.1 1.1E+02 0.0025 25.8 6.6 38 282-323 104-141 (142)
329 PRK10481 hypothetical protein; 39.1 3.6E+02 0.0078 25.9 10.8 85 230-322 120-211 (224)
330 PRK05749 3-deoxy-D-manno-octul 38.9 1.7E+02 0.0037 29.7 9.0 76 239-324 260-351 (425)
331 PRK08861 cystathionine gamma-s 38.8 3.2E+02 0.007 28.1 11.0 98 217-322 70-173 (388)
332 TIGR01976 am_tr_V_VC1184 cyste 38.8 4.1E+02 0.0089 26.5 15.5 100 217-322 79-191 (397)
333 TIGR02429 pcaI_scoA_fam 3-oxoa 38.7 2.4E+02 0.0052 27.0 9.3 97 208-323 11-122 (222)
334 PRK04207 glyceraldehyde-3-phos 38.6 3.5E+02 0.0076 27.4 11.0 96 218-328 3-113 (341)
335 PRK02705 murD UDP-N-acetylmura 38.6 2.2E+02 0.0047 29.5 9.8 56 234-291 18-76 (459)
336 PRK09212 pyruvate dehydrogenas 38.0 2.2E+02 0.0049 28.6 9.5 55 257-316 218-280 (327)
337 PRK05600 thiamine biosynthesis 38.0 2.9E+02 0.0064 28.3 10.5 109 205-323 31-162 (370)
338 PLN02509 cystathionine beta-ly 38.0 2.8E+02 0.0061 29.4 10.6 92 218-322 151-252 (464)
339 PRK07505 hypothetical protein; 38.0 4.4E+02 0.0096 26.6 14.1 101 217-322 107-214 (402)
340 TIGR00215 lpxB lipid-A-disacch 37.9 3.5E+02 0.0076 27.5 11.1 43 266-324 251-293 (385)
341 PRK08960 hypothetical protein; 37.9 2.6E+02 0.0056 28.1 10.0 96 213-322 90-203 (387)
342 PRK00421 murC UDP-N-acetylmura 37.8 1.5E+02 0.0033 30.9 8.6 89 215-322 6-95 (461)
343 PRK02478 Maf-like protein; Rev 37.8 2.2E+02 0.0047 26.7 8.8 87 223-322 9-109 (199)
344 PF00070 Pyr_redox: Pyridine n 37.8 1.8E+02 0.0038 22.3 7.0 52 219-270 2-58 (80)
345 TIGR03215 ac_ald_DH_ac acetald 37.8 4E+02 0.0086 26.5 11.0 94 218-327 3-98 (285)
346 cd00138 PLDc Phospholipase D. 37.7 1.9E+02 0.0041 25.2 8.1 51 225-275 52-107 (176)
347 PRK00648 Maf-like protein; Rev 37.5 2.6E+02 0.0057 26.0 9.2 89 223-322 9-105 (191)
348 PLN02242 methionine gamma-lyas 37.4 2.6E+02 0.0055 29.1 10.1 98 217-322 93-198 (418)
349 cd03466 Nitrogenase_NifN_2 Nit 37.4 5E+02 0.011 27.0 16.4 96 215-324 299-397 (429)
350 cd01973 Nitrogenase_VFe_beta_l 37.3 5.2E+02 0.011 27.3 15.2 141 153-324 257-406 (454)
351 PF01118 Semialdhyde_dh: Semia 37.3 70 0.0015 26.9 5.0 106 218-334 1-107 (121)
352 PLN00175 aminotransferase fami 37.2 4.5E+02 0.0097 26.9 11.8 99 217-322 117-225 (413)
353 PRK07366 succinyldiaminopimela 37.1 3.4E+02 0.0074 27.2 10.8 98 217-321 94-202 (388)
354 PRK09136 5'-methylthioadenosin 36.9 1.6E+02 0.0035 28.5 8.0 74 220-325 127-204 (245)
355 COG1086 Predicted nucleoside-d 36.9 1.7E+02 0.0038 32.1 8.8 115 215-331 249-381 (588)
356 TIGR01214 rmlD dTDP-4-dehydror 36.8 1.2E+02 0.0026 28.7 7.1 26 301-326 76-101 (287)
357 PRK05557 fabG 3-ketoacyl-(acyl 36.8 1.9E+02 0.0042 26.1 8.3 75 216-292 5-92 (248)
358 PRK08363 alanine aminotransfer 36.8 2.9E+02 0.0062 27.9 10.2 103 213-322 91-204 (398)
359 PRK14362 Maf-like protein; Pro 36.7 2.9E+02 0.0062 26.2 9.4 87 223-322 18-113 (207)
360 PRK03803 murD UDP-N-acetylmura 36.5 2E+02 0.0044 29.8 9.2 91 214-321 4-96 (448)
361 TIGR01142 purT phosphoribosylg 36.5 95 0.0021 31.2 6.6 71 218-295 1-74 (380)
362 PF13685 Fe-ADH_2: Iron-contai 36.5 17 0.00036 35.5 1.1 70 252-325 32-107 (250)
363 PRK12743 oxidoreductase; Provi 36.4 2.3E+02 0.0049 26.4 8.8 74 216-291 2-88 (256)
364 PRK09411 carbamate kinase; Rev 36.4 1.2E+02 0.0026 30.5 7.1 66 198-268 29-98 (297)
365 PRK08175 aminotransferase; Val 36.3 3.6E+02 0.0079 27.2 10.9 103 213-322 88-202 (395)
366 PRK06719 precorrin-2 dehydroge 36.2 1.9E+02 0.004 25.9 7.8 90 215-324 12-101 (157)
367 PRK12655 fructose-6-phosphate 36.1 1.5E+02 0.0033 28.3 7.5 99 225-330 62-170 (220)
368 PF02302 PTS_IIB: PTS system, 36.0 78 0.0017 24.8 4.8 34 260-293 22-57 (90)
369 PRK06407 ornithine cyclodeamin 35.9 2.6E+02 0.0056 27.8 9.5 89 215-307 116-214 (301)
370 cd05013 SIS_RpiR RpiR-like pro 35.9 2.3E+02 0.0049 23.3 7.9 45 246-290 67-111 (139)
371 cd07021 Clp_protease_NfeD_like 35.6 2.7E+02 0.0059 25.5 8.9 78 224-302 14-98 (178)
372 PRK06718 precorrin-2 dehydroge 35.6 2.3E+02 0.0051 26.3 8.6 93 215-324 9-101 (202)
373 PRK13181 hisH imidazole glycer 35.5 63 0.0014 29.7 4.7 71 256-329 13-84 (199)
374 TIGR03217 4OH_2_O_val_ald 4-hy 35.4 1.8E+02 0.0039 29.4 8.4 59 218-276 105-166 (333)
375 PF00185 OTCace: Aspartate/orn 35.2 1.2E+02 0.0026 27.1 6.3 73 215-289 1-79 (158)
376 TIGR03589 PseB UDP-N-acetylglu 35.2 2E+02 0.0043 28.3 8.5 109 215-326 3-125 (324)
377 PLN00203 glutamyl-tRNA reducta 35.1 4.5E+02 0.0097 28.5 11.7 72 216-291 266-337 (519)
378 PF09660 DUF2397: Protein of u 35.1 5.9E+02 0.013 27.3 12.7 32 179-210 183-214 (486)
379 COG0552 FtsY Signal recognitio 34.9 5.2E+02 0.011 26.6 14.5 136 184-336 168-330 (340)
380 PLN02735 carbamoyl-phosphate s 34.8 2.5E+02 0.0054 33.3 10.4 95 215-324 972-1075(1102)
381 PRK05942 aspartate aminotransf 34.7 3.8E+02 0.0082 27.0 10.7 99 217-322 99-208 (394)
382 PRK13936 phosphoheptose isomer 34.7 3.7E+02 0.008 24.8 12.5 41 279-326 107-147 (197)
383 PF00072 Response_reg: Respons 34.6 1.3E+02 0.0028 23.6 6.0 76 245-328 2-82 (112)
384 COG0569 TrkA K+ transport syst 34.6 1.8E+02 0.0038 27.6 7.7 18 306-323 80-98 (225)
385 PRK06176 cystathionine gamma-s 34.5 4.1E+02 0.0089 27.1 10.9 96 217-322 67-169 (380)
386 PRK07178 pyruvate carboxylase 34.5 99 0.0021 32.6 6.6 81 217-297 3-87 (472)
387 PF00899 ThiF: ThiF family; I 34.4 2.3E+02 0.0051 24.0 7.9 99 217-324 3-124 (135)
388 PRK08776 cystathionine gamma-s 34.3 5.3E+02 0.012 26.6 11.8 98 217-322 77-180 (405)
389 PRK11337 DNA-binding transcrip 34.3 1.3E+02 0.0028 29.2 6.9 64 257-327 157-224 (292)
390 PRK02472 murD UDP-N-acetylmura 34.2 3E+02 0.0066 28.3 10.0 72 215-291 4-76 (447)
391 KOG1430 C-3 sterol dehydrogena 34.2 3.6E+02 0.0079 27.9 10.3 110 216-328 4-128 (361)
392 TIGR01814 kynureninase kynuren 34.1 4.6E+02 0.01 26.6 11.2 104 215-322 86-206 (406)
393 cd01965 Nitrogenase_MoFe_beta_ 34.0 5.5E+02 0.012 26.6 14.9 94 215-324 298-396 (428)
394 PLN02427 UDP-apiose/xylose syn 34.0 1.8E+02 0.0039 29.3 8.1 103 217-325 15-136 (386)
395 PRK08462 biotin carboxylase; V 34.0 96 0.0021 32.1 6.3 80 217-298 5-91 (445)
396 PRK06939 2-amino-3-ketobutyrat 33.9 1.5E+02 0.0033 29.4 7.5 24 299-322 182-209 (397)
397 cd06442 DPM1_like DPM1_like re 33.7 1.4E+02 0.0029 26.8 6.6 46 229-275 42-87 (224)
398 PLN02591 tryptophan synthase 33.6 4.3E+02 0.0092 25.7 10.3 106 217-324 81-196 (250)
399 PRK01839 Maf-like protein; Rev 33.5 1.2E+02 0.0027 28.7 6.4 89 222-320 14-119 (209)
400 PRK08636 aspartate aminotransf 33.5 4.5E+02 0.0099 26.6 11.1 99 217-322 97-213 (403)
401 TIGR01110 mdcA malonate decarb 33.5 4.9E+02 0.011 28.4 11.4 121 201-325 26-182 (543)
402 PRK07682 hypothetical protein; 33.4 4.9E+02 0.011 25.8 11.9 100 216-322 82-192 (378)
403 COG0075 Serine-pyruvate aminot 33.4 5.8E+02 0.012 26.6 12.3 99 216-322 56-166 (383)
404 cd06369 PBP1_GC_C_enterotoxin_ 33.4 2.2E+02 0.0048 29.7 8.6 49 252-325 65-113 (380)
405 PRK07049 methionine gamma-lyas 33.3 5.7E+02 0.012 26.6 11.9 55 216-274 99-155 (427)
406 PRK07671 cystathionine beta-ly 33.3 5.3E+02 0.011 26.2 11.5 92 218-322 68-169 (377)
407 PRK14571 D-alanyl-alanine synt 33.3 92 0.002 30.4 5.8 43 253-295 19-65 (299)
408 PRK00884 Maf-like protein; Rev 33.2 2.3E+02 0.005 26.5 8.1 88 223-322 8-102 (194)
409 cd06452 SepCysS Sep-tRNA:Cys-t 33.2 4.9E+02 0.011 25.7 11.7 97 216-322 60-174 (361)
410 PLN00145 tyrosine/nicotianamin 33.1 2.6E+02 0.0056 29.0 9.3 103 213-322 115-228 (430)
411 COG3980 spsG Spore coat polysa 32.9 1.9E+02 0.0042 29.2 7.7 73 216-291 159-235 (318)
412 cd03821 GT1_Bme6_like This fam 32.9 3.5E+02 0.0076 25.3 9.6 98 215-322 202-310 (375)
413 cd01972 Nitrogenase_VnfE_like 32.8 5.8E+02 0.013 26.4 13.5 95 215-323 292-399 (426)
414 PRK05749 3-deoxy-D-manno-octul 32.8 3.1E+02 0.0067 27.8 9.7 96 215-324 49-154 (425)
415 PRK06091 membrane protein FdrA 32.7 3.3E+02 0.0071 29.8 10.1 134 181-320 75-220 (555)
416 cd05017 SIS_PGI_PMI_1 The memb 32.7 1.2E+02 0.0027 25.3 5.7 53 266-325 26-78 (119)
417 COG0151 PurD Phosphoribosylami 32.7 1.2E+02 0.0027 31.9 6.7 73 218-298 2-78 (428)
418 COG0855 Ppk Polyphosphate kina 32.6 97 0.0021 34.4 6.1 51 223-273 381-433 (696)
419 cd08199 EEVS 2-epi-5-epi-valio 32.6 2.3E+02 0.0049 28.9 8.6 27 298-326 97-123 (354)
420 TIGR01465 cobM_cbiF precorrin- 32.6 2.4E+02 0.0053 26.1 8.3 54 227-281 59-115 (229)
421 PRK05865 hypothetical protein; 32.6 1.2E+02 0.0025 34.9 7.1 98 218-326 2-103 (854)
422 PLN00416 carbonate dehydratase 32.6 2.7E+02 0.006 27.3 8.8 20 308-327 129-148 (258)
423 PRK06895 putative anthranilate 32.6 2.4E+02 0.0053 25.6 8.1 74 243-324 3-79 (190)
424 TIGR01139 cysK cysteine syntha 32.6 56 0.0012 32.0 4.1 59 213-275 54-112 (298)
425 PRK07283 hypothetical protein; 32.6 2.5E+02 0.0055 23.1 7.4 56 234-290 28-84 (98)
426 PRK05784 phosphoribosylamine-- 32.5 62 0.0013 34.6 4.6 77 218-295 2-81 (486)
427 PRK13152 hisH imidazole glycer 32.5 72 0.0016 29.5 4.6 68 256-327 13-83 (201)
428 PRK06756 flavodoxin; Provision 32.4 99 0.0021 26.8 5.3 66 258-324 22-90 (148)
429 PLN02662 cinnamyl-alcohol dehy 32.3 3.8E+02 0.0083 25.7 9.9 105 216-324 4-125 (322)
430 cd01743 GATase1_Anthranilate_S 32.3 1.1E+02 0.0024 27.6 5.7 65 257-327 13-81 (184)
431 PRK12767 carbamoyl phosphate s 32.1 70 0.0015 31.3 4.7 41 218-259 3-43 (326)
432 PRK02141 Maf-like protein; Rev 32.1 3.3E+02 0.0072 25.7 9.1 90 223-322 15-112 (207)
433 PLN00125 Succinyl-CoA ligase [ 31.9 3E+02 0.0066 27.6 9.2 102 217-320 71-177 (300)
434 cd04252 AAK_NAGK-fArgBP AAK_NA 31.8 3.1E+02 0.0067 26.3 9.0 106 217-325 30-172 (248)
435 PRK02627 acetylornithine amino 31.6 4.1E+02 0.0089 26.5 10.3 103 216-322 97-221 (396)
436 PRK13141 hisH imidazole glycer 31.6 79 0.0017 29.2 4.7 71 256-329 13-84 (205)
437 cd01065 NAD_bind_Shikimate_DH 31.6 2.4E+02 0.0052 24.1 7.6 72 215-291 18-89 (155)
438 PRK05294 carB carbamoyl phosph 31.5 3.4E+02 0.0074 31.9 10.8 96 215-326 937-1041(1066)
439 cd05710 SIS_1 A subgroup of th 31.4 53 0.0012 27.7 3.3 28 212-239 44-74 (120)
440 PRK07777 aminotransferase; Val 31.4 5.4E+02 0.012 25.7 11.5 99 217-322 87-197 (387)
441 TIGR03812 tyr_de_CO2_Arch tyro 31.3 5.2E+02 0.011 25.4 11.2 99 215-322 76-188 (373)
442 TIGR02113 coaC_strep phosphopa 31.1 88 0.0019 28.8 4.9 33 218-250 3-38 (177)
443 PRK12771 putative glutamate sy 31.1 3.7E+02 0.008 28.9 10.4 77 213-291 134-230 (564)
444 PRK11908 NAD-dependent epimera 31.1 2.5E+02 0.0053 27.7 8.5 105 218-326 3-119 (347)
445 PRK09288 purT phosphoribosylgl 31.0 74 0.0016 32.2 4.8 73 215-294 11-86 (395)
446 PRK14365 Maf-like protein; Pro 30.9 2.5E+02 0.0054 26.3 7.9 90 222-322 6-103 (197)
447 PRK12414 putative aminotransfe 30.5 5.6E+02 0.012 25.7 11.1 100 216-322 91-200 (384)
448 TIGR01265 tyr_nico_aTase tyros 30.5 4.1E+02 0.0088 26.9 10.1 95 214-322 95-207 (403)
449 PLN02686 cinnamoyl-CoA reducta 30.5 2.7E+02 0.0058 28.1 8.7 110 212-326 49-180 (367)
450 PF04413 Glycos_transf_N: 3-De 30.5 1.5E+02 0.0033 27.2 6.4 95 217-325 22-126 (186)
451 PF06258 Mito_fiss_Elm1: Mitoc 30.4 4.5E+02 0.0098 26.3 10.2 84 228-327 170-259 (311)
452 cd03807 GT1_WbnK_like This fam 30.4 4.1E+02 0.0089 24.7 9.6 95 217-322 194-297 (365)
453 PRK09148 aminotransferase; Val 30.3 4.2E+02 0.009 26.9 10.2 102 213-322 89-203 (405)
454 PRK05664 threonine-phosphate d 30.2 5.4E+02 0.012 25.3 10.9 102 216-327 65-166 (330)
455 PRK11543 gutQ D-arabinose 5-ph 30.2 3.9E+02 0.0085 26.1 9.7 63 257-326 59-125 (321)
456 TIGR03127 RuMP_HxlB 6-phospho 30.2 1.2E+02 0.0027 27.0 5.6 61 258-326 48-108 (179)
457 PRK12939 short chain dehydroge 30.1 1.8E+02 0.004 26.5 6.9 95 216-314 7-127 (250)
458 COG0521 MoaB Molybdopterin bio 30.0 80 0.0017 29.2 4.3 37 241-277 9-54 (169)
459 PRK09257 aromatic amino acid a 30.0 5.9E+02 0.013 25.6 11.6 98 219-322 98-210 (396)
460 PRK07454 short chain dehydroge 29.8 3.3E+02 0.0072 24.8 8.7 75 214-291 4-91 (241)
461 PRK08068 transaminase; Reviewe 29.8 5.2E+02 0.011 25.9 10.7 103 213-322 91-205 (389)
462 PRK11104 hemG protoporphyrinog 29.7 1.3E+02 0.0029 27.3 5.8 65 257-324 20-85 (177)
463 PRK09135 pteridine reductase; 29.7 1E+02 0.0023 28.1 5.2 99 215-314 5-128 (249)
464 PF08349 DUF1722: Protein of u 29.5 3.5E+02 0.0076 22.9 9.5 74 118-197 11-84 (117)
465 PRK07269 cystathionine gamma-s 29.5 6.1E+02 0.013 25.7 11.7 97 217-322 71-171 (364)
466 TIGR00075 hypD hydrogenase exp 29.5 1.8E+02 0.004 30.1 7.2 50 272-324 176-225 (369)
467 TIGR01426 MGT glycosyltransfer 29.4 1.3E+02 0.0029 30.1 6.3 32 290-327 92-123 (392)
468 PRK14188 bifunctional 5,10-met 29.3 1.8E+02 0.004 29.1 7.1 68 220-290 137-208 (296)
469 PRK08762 molybdopterin biosynt 29.3 4.2E+02 0.0092 27.0 10.0 110 205-324 125-257 (376)
470 PRK13011 formyltetrahydrofolat 29.3 1.8E+02 0.0038 28.9 7.0 51 217-273 92-144 (286)
471 TIGR01737 FGAM_synth_I phospho 29.3 2.1E+02 0.0045 27.1 7.2 33 256-290 15-47 (227)
472 TIGR00172 maf MAF protein. Thi 29.2 2.1E+02 0.0047 26.4 7.1 87 223-322 9-103 (183)
473 COG1658 Small primase-like pro 29.2 1.2E+02 0.0025 26.8 5.0 50 212-265 26-78 (127)
474 PRK07411 hypothetical protein; 29.1 5E+02 0.011 26.8 10.5 108 206-323 29-159 (390)
475 PRK11071 esterase YqiA; Provis 29.0 4.4E+02 0.0095 23.9 9.2 86 218-328 4-94 (190)
476 PRK05653 fabG 3-ketoacyl-(acyl 29.0 3.3E+02 0.0071 24.6 8.4 74 216-292 5-91 (246)
477 TIGR03403 nifS_epsilon cystein 28.9 5.9E+02 0.013 25.3 13.4 102 215-322 60-175 (382)
478 PRK13940 glutamyl-tRNA reducta 28.9 2.5E+02 0.0055 29.3 8.4 71 215-291 180-250 (414)
479 PRK07313 phosphopantothenoylcy 28.8 95 0.0021 28.6 4.7 33 218-250 4-39 (182)
480 PRK01642 cls cardiolipin synth 28.7 3.5E+02 0.0075 28.7 9.5 97 196-309 317-419 (483)
481 PRK10696 tRNA 2-thiocytidine b 28.7 5.3E+02 0.011 24.7 11.0 62 211-273 24-94 (258)
482 COG5017 Uncharacterized conser 28.7 1.1E+02 0.0024 27.6 4.8 59 211-273 61-123 (161)
483 PRK09134 short chain dehydroge 28.6 2.1E+02 0.0046 26.6 7.2 98 215-315 8-131 (258)
484 PRK06823 ornithine cyclodeamin 28.6 4.1E+02 0.0089 26.6 9.5 97 209-308 119-225 (315)
485 PRK12745 3-ketoacyl-(acyl-carr 28.5 3.5E+02 0.0075 24.9 8.6 73 217-291 3-88 (256)
486 COG0707 MurG UDP-N-acetylgluco 28.5 2E+02 0.0044 29.4 7.5 97 215-328 182-283 (357)
487 TIGR00746 arcC carbamate kinas 28.5 3.5E+02 0.0076 27.2 9.0 27 208-234 34-61 (310)
488 TIGR01521 FruBisAldo_II_B fruc 28.5 1.9E+02 0.004 29.8 7.1 95 224-321 25-138 (347)
489 PRK12342 hypothetical protein; 28.4 3E+02 0.0066 26.9 8.3 94 217-330 54-149 (254)
490 PF06070 Herpes_UL32: Herpesvi 28.4 3.2E+02 0.0069 31.4 9.3 99 133-233 162-270 (839)
491 PRK12828 short chain dehydroge 28.2 2.8E+02 0.006 25.0 7.7 108 215-326 6-141 (239)
492 PRK00724 formate dehydrogenase 28.1 2E+02 0.0044 28.1 7.1 64 206-272 158-227 (263)
493 PRK01372 ddl D-alanine--D-alan 28.1 2E+02 0.0043 27.9 7.1 40 254-293 24-66 (304)
494 PRK04690 murD UDP-N-acetylmura 28.0 4E+02 0.0087 28.0 9.8 91 216-322 8-98 (468)
495 PRK07878 molybdopterin biosynt 28.0 4.7E+02 0.01 26.9 10.1 109 205-323 32-163 (392)
496 PRK08125 bifunctional UDP-gluc 28.0 3.1E+02 0.0068 30.1 9.3 108 215-326 314-433 (660)
497 cd04187 DPM1_like_bac Bacteria 28.0 2.4E+02 0.0052 24.4 7.1 47 218-264 2-52 (181)
498 COG0520 csdA Selenocysteine ly 27.9 7E+02 0.015 25.9 13.6 109 198-322 68-197 (405)
499 TIGR00732 dprA DNA protecting 27.8 5.3E+02 0.011 24.4 11.2 103 213-325 71-189 (220)
500 PF05185 PRMT5: PRMT5 arginine 27.8 1.4E+02 0.0031 31.5 6.4 71 216-288 187-263 (448)
No 1
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-78 Score=571.72 Aligned_cols=307 Identities=64% Similarity=0.960 Sum_probs=296.7
Q ss_pred CCCCcchhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 016064 90 GGKSGRAFSVIDEFNNWR-KQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRY 168 (396)
Q Consensus 90 ~~~~~~~~~vI~~~~~~l-~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~ 168 (396)
+...+.+|++|+.|++|+ .||++++++|||++|.++|+.++++|.+||..+|+.+.+.|+.+.++.+++.+||++|+||
T Consensus 4 ~~~~~~~f~iie~f~~~l~eDpd~a~~vAAIraL~~vL~~s~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rf 83 (313)
T KOG1466|consen 4 SLVSMREFSIIEYFLSFLQEDPDLAMAVAAIRALLEVLRRSQATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRF 83 (313)
T ss_pred ccccCCcchHHHHHHHHHhcCchhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHH
Confidence 455688999999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeC
Q 016064 169 VTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTE 248 (396)
Q Consensus 169 i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~E 248 (396)
+.+....+..||+++|++++++++.|+++...++.+|++.+.+||.||++|||||+|+.|+++|+.|++++++|+|+|+|
T Consensus 84 vtr~slld~~Df~~ck~~l~erg~~F~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTE 163 (313)
T KOG1466|consen 84 VTRASLLDYEDFEQCKQHLLERGELFIERARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTE 163 (313)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEec
Confidence 99984447889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 249 GRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 249 srP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
|||.++|..|+++|.+.||||+++.|||+||.|.+||+|++|||+|.+|||++|++|||++|++||+.++|||||+|+||
T Consensus 164 srPd~sG~lm~~~L~~~~IPvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~K 243 (313)
T KOG1466|consen 164 SRPDGSGKLMAKELKKLGIPVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHK 243 (313)
T ss_pred CCCCCchhHHHHHHHhcCCCeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcccCCCCCcCCC--CccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhhC
Q 016064 329 FARLYPLDQKDMGPALRPIDFGVPIPS--KVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 396 (396)
Q Consensus 329 f~~~~p~~~~d~~~~~~~~~~~~~~~~--~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y~ 396 (396)
|.+.||++|.|++....+++|+.+.++ ++...+|..|||||+|||++|||+|+++||+|+++|+|+|+
T Consensus 244 FvRlfPLnQ~Dlp~~~~p~~f~~~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIKlYl 313 (313)
T KOG1466|consen 244 FVRLFPLNQKDLPPALPPFKFSRPVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIKLYL 313 (313)
T ss_pred eeeeccCcccccccccCCcccCCCCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHHhhC
Confidence 999999999999998888888776665 88888999999999999999999999999999999999996
No 2
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=6.4e-69 Score=528.80 Aligned_cols=294 Identities=32% Similarity=0.436 Sum_probs=268.3
Q ss_pred CcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhh
Q 016064 93 SGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRT 172 (396)
Q Consensus 93 ~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~ 172 (396)
.++.|+.|+.|+ ++|.|.++ ++|+.+|...+...++.+..++.+.|+..+++|.++||++++|+|+++++++.+.
T Consensus 2 ~~~~~~~ik~~~-vrGa~~ia--~~aa~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~-- 76 (301)
T TIGR00511 2 VEETAEKIRSME-IRGAGRIA--RAAAAALMEQAAKAESASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMS-- 76 (301)
T ss_pred HHHHHHHHHhCc-ccCcHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhc--
Confidence 357789999998 89999885 9999999999988888899999999999999999999999999999998888763
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCC
Q 016064 173 SALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPD 252 (396)
Q Consensus 173 ~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~ 252 (396)
..+++++|+.+++.+++|.+++..++++|+++|.++|++|++|||||+|++|+++|++|+++||+|+|||+||||.
T Consensus 77 ----~~~~~~~k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~ 152 (301)
T TIGR00511 77 ----GEDVETLRETVIERADAFINQSDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPR 152 (301)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCc
Confidence 2468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
+||+.||++|.+.||+||+|+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++.
T Consensus 153 ~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~ 232 (301)
T TIGR00511 153 KQGHITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPK 232 (301)
T ss_pred chHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCC---CCCCCcccCCC-CCcCCCCccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhh
Q 016064 333 YPLDQK---DMGPALRPIDF-GVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLY 395 (396)
Q Consensus 333 ~p~~~~---d~~~~~~~~~~-~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y 395 (396)
++.++. +..++.+..++ +...+++++++||.||+|||+|||+||||.|+++|++++..|.++|
T Consensus 233 ~~~~~~~~ie~~~~~ev~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~~ 299 (301)
T TIGR00511 233 TITGELVEIEERDPTEVLDEEDLKQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKELL 299 (301)
T ss_pred CCCCCcccccccCHHHhccccCccCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHHc
Confidence 877543 12222222222 1234567999999999999999999999999999999999999987
No 3
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=5.4e-68 Score=524.28 Aligned_cols=297 Identities=34% Similarity=0.444 Sum_probs=268.0
Q ss_pred CCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 016064 90 GGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYV 169 (396)
Q Consensus 90 ~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i 169 (396)
+++.++.++.|+.|+ ++|+|.+ +++++.+|..+++.+++.+..+|++.|+..+++|.++||++++|+|+++++++.
T Consensus 4 ~~~v~~~~~~i~~~~-v~Ga~~i--~~~a~~~l~~~~~~~~~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~~- 79 (310)
T PRK08535 4 MPEVLETAEKIKTME-IRGAGRI--ARAAAEALKDQAEKSDAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRY- 79 (310)
T ss_pred chhHHHHHHHHHcCc-ccCcHHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHh-
Confidence 455678889999998 8898887 499999999999998899999999999999999999999999999998766654
Q ss_pred HhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCC
Q 016064 170 TRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEG 249 (396)
Q Consensus 170 ~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Es 249 (396)
. ...+++++|+.+++.+++|++++..++++|+++|.++|++|++|||||+|++|+++|++|+++||+|+|||+||
T Consensus 80 ---~--~~~~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~Es 154 (310)
T PRK08535 80 ---Y--SGETVEEARESVIERAEEFIESSENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATET 154 (310)
T ss_pred ---h--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecC
Confidence 1 23568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 250 RPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 250 rP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
||.+||+.+|++|.+.||+|++|+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||
T Consensus 155 rP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~ 234 (310)
T PRK08535 155 RPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKF 234 (310)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCC---CCCCCcccCCCCC-cCCCCccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhh
Q 016064 330 ARLYPLDQK---DMGPALRPIDFGV-PIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLY 395 (396)
Q Consensus 330 ~~~~p~~~~---d~~~~~~~~~~~~-~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y 395 (396)
++.++.++. +..++.+..+++. ...++++++||.||+|||+|||+||||.|+++|+++++++.++|
T Consensus 235 ~~~~~~~~~~~ie~~~~~ev~~~~~~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~~~~~~~ 304 (310)
T PRK08535 235 SPKTLLGELVEIEERDPTEVLPEEILAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYTIIKEYL 304 (310)
T ss_pred cCCCCCCCcceecccCHHHhcccccccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHHHHHHHh
Confidence 998877642 1222222222221 24567999999999999999999999999999999999998887
No 4
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=6e-67 Score=521.51 Aligned_cols=315 Identities=24% Similarity=0.306 Sum_probs=278.1
Q ss_pred hHHHHHHHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 016064 67 DWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASD 146 (396)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~ 146 (396)
.|....-..+.|..+|+..++.+..+.++.+++|++|+ ++|+|.++ ++|..+|...++.+...+..++.+.|+.+++
T Consensus 7 ~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~-vrGApaig--~aaa~~lal~~~~~~~~~~~~~~~~l~~~~~ 83 (344)
T PRK05720 7 AWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMV-VRGAPAIG--IAAAYGMALAAREDASDDGEEFLKKLEEAAA 83 (344)
T ss_pred EEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCe-ecCCcHHH--HHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 44444445678889999999999999999999999999 99999995 8899999877777656688999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH
Q 016064 147 SLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR 226 (396)
Q Consensus 147 ~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~ 226 (396)
+|.++|||+++|.|++++|++.+.+ .+++++|+.+++.+++|++++..++++|+++|+++|++|++|||||||+
T Consensus 84 ~L~~~RPtavnL~~ai~~~~~~i~~------~~~~~~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThc~sg 157 (344)
T PRK05720 84 YLAASRPTAVNLFWALDRMREVLAP------LPGAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIRKGQGILTHCNAG 157 (344)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCC
Confidence 9999999999999999999887643 2478999999999999999999999999999999999999999999997
Q ss_pred --------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEe
Q 016064 227 --------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVV 295 (396)
Q Consensus 227 --------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~ 295 (396)
|++++|+.|+++||+|+|||+||||.+||.++ |++|.+.||||++|+|++++++|+ +||+||+|||+|+
T Consensus 158 ~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~ 237 (344)
T PRK05720 158 WLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIA 237 (344)
T ss_pred cceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEe
Confidence 57889999999999999999999999999976 999999999999999999999996 5999999999999
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecccccccccccC------CCCCCCCCcccCCC-C-CcCCCCccccccceecc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPL------DQKDMGPALRPIDF-G-VPIPSKVEVETSARDYT 367 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~------~~~d~~~~~~~~~~-~-~~~~~~~~v~np~fD~t 367 (396)
+||+++||+|||++|++||+|+||||||||+|||++..+. ++++.. +...+ + ...+++++++||.||+|
T Consensus 238 ~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~---ev~~~~~~~~~~~~v~v~Np~FDvT 314 (344)
T PRK05720 238 ANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPE---EVTEVGGVRIAPEGVKVYNPAFDVT 314 (344)
T ss_pred cCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHH---HhcccCCcccCCCCceeecccccCC
Confidence 9999999999999999999999999999999999976543 333322 22222 1 12456899999999999
Q ss_pred CCCCccEEEeCCCCCCCchHHHHHHhh
Q 016064 368 PPQYLTLLFTDLGVLTPSVVSDELIQL 394 (396)
Q Consensus 368 PpelIt~iITE~Gv~~Ps~v~~~L~~~ 394 (396)
||+|||+||||.|+++|+++.. +.++
T Consensus 315 P~~lIt~iITE~Gv~~p~~~~~-~~~~ 340 (344)
T PRK05720 315 PAELITGIITEKGIVAPPDTAN-LAAL 340 (344)
T ss_pred CHHHCCEEEcCCCccCccHHHH-HHHH
Confidence 9999999999999999997764 3443
No 5
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=3.1e-66 Score=517.75 Aligned_cols=319 Identities=24% Similarity=0.305 Sum_probs=280.6
Q ss_pred hHHHHHHHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 016064 67 DWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASD 146 (396)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~ 146 (396)
.|....-..+.|..+|+..++.+..+.++.|++|++|+ ++|+|.++ ++|..+|...+......+.+++.+.|+.+.+
T Consensus 20 ~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~-vRGApaig--iaAa~glal~~~~~~~~~~~~~~~~l~~~~~ 96 (363)
T PRK05772 20 IWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ-VRGAPAIG--ITAGYGMVLALIENNVKTLDDAIRELTRAKT 96 (363)
T ss_pred EecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc-ccCCcHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 56555556788899999999999999999999999999 99999996 8888888777776655688999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHhhccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecCh
Q 016064 147 SLKSWDTTSISLTAGCDLFMRYVTRTSAL-EYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFS 225 (396)
Q Consensus 147 ~L~~aRPt~v~L~na~~~f~r~i~r~~~~-~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S 225 (396)
+|.++|||++||.||+++|++++...+.. ...+++++++.+++.++.|.+++..++++|+++|+++|.+|++|||||||
T Consensus 97 ~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~dg~~ILThcns 176 (363)
T PRK05772 97 ILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLNDGDTVLTQCNA 176 (363)
T ss_pred HHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEecCC
Confidence 99999999999999999999998765432 23468999999999999999999999999999999999999999999998
Q ss_pred H---------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEccee
Q 016064 226 R---------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADG 293 (396)
Q Consensus 226 ~---------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~ 293 (396)
+ +++++|+.|+++||+|+|||+||||.+||.+| +++|.+.|||||+|+|++++++|+ +||+||+|||+
T Consensus 177 g~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~ 256 (363)
T PRK05772 177 GGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADR 256 (363)
T ss_pred cchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccE
Confidence 5 57899999999999999999999999999877 899999999999999999999995 59999999999
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEEecccccccccccCCCCCCC--CCcccCCC-C-CcCCCCccccccceeccCC
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMG--PALRPIDF-G-VPIPSKVEVETSARDYTPP 369 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~~--~~~~~~~~-~-~~~~~~~~v~np~fD~tPp 369 (396)
|++||+++||+|||++|++||+|+|||||+||++||++.++.++..+. .+.+...+ + ...+++++++||.||+|||
T Consensus 257 I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~~~i~ieer~p~ev~~~~~~~~~~~~~~v~Np~FDvTP~ 336 (363)
T PRK05772 257 ILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVNDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPP 336 (363)
T ss_pred EecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccccccccccCCHHHhcccCCceecCCCceeeccCccCCCH
Confidence 999999999999999999999999999999999999998755432221 11112111 1 1246789999999999999
Q ss_pred CCccEEEeCCCCCCCchHH
Q 016064 370 QYLTLLFTDLGVLTPSVVS 388 (396)
Q Consensus 370 elIt~iITE~Gv~~Ps~v~ 388 (396)
+|||+||||.|+++|+...
T Consensus 337 ~lIt~iITE~Gv~~p~~~~ 355 (363)
T PRK05772 337 KYITGIITEKGIIYPPFHK 355 (363)
T ss_pred HHCCEEEccCCccCCchHH
Confidence 9999999999999998543
No 6
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=2e-66 Score=514.80 Aligned_cols=299 Identities=26% Similarity=0.361 Sum_probs=265.5
Q ss_pred HHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcC
Q 016064 73 QEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWD 152 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aR 152 (396)
-..+.|..+|+..++.+..+.++.|+.|++|+ +||+|.|+ ++|..+|.-..... .+..++.+.|+.++++|.++|
T Consensus 10 l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~-vRGApaig--~~aa~~~~l~~~~~--~~~~~~~~~l~~~~~~L~~~R 84 (331)
T TIGR00512 10 LELLDQRLLPHESEYIEVTTVEDVADAIRDMR-VRGAPAIG--IVAAYGLALAAREA--DEREEFKALLEEKLQYLVSSR 84 (331)
T ss_pred EEEEecCCCCCeeEEEEeCCHHHHHHHHHhCc-ccCchHHH--HHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999999999 99999996 66656665334433 478899999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc----eEEeecChH--
Q 016064 153 TTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGC----TILVHGFSR-- 226 (396)
Q Consensus 153 Pt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~----~ILT~~~S~-- 226 (396)
||+++|+|++++|++++... .+++++|+.+++.+++|.+++..++++|+++|+++|++|+ +|||||||+
T Consensus 85 PtavnL~~A~~~~~~~i~~~-----~~~~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~l 159 (331)
T TIGR00512 85 PTAVNLSWALDRMRAALEAA-----KTVADIKEALLAEAERILEEDLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSL 159 (331)
T ss_pred CcHhhHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeecCCccc
Confidence 99999999999999887652 4688999999999999999999999999999999999999 999999885
Q ss_pred ------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEeec
Q 016064 227 ------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVES 297 (396)
Q Consensus 227 ------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~~N 297 (396)
+|+++|+.|+++||+|+|||+||||.+||.++ |++|.+.||||++|+|++++|+|+ +||+|++|||+|++|
T Consensus 160 at~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~n 239 (331)
T TIGR00512 160 ATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAAN 239 (331)
T ss_pred cccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecC
Confidence 88999999999999999999999999999976 999999999999999999999998 999999999999999
Q ss_pred CCeeccccHHHHHHHhhhCCCcEEEeccccccccccc------CCCCCCCCCcccCCC-CC-cCCCCccccccceeccCC
Q 016064 298 GGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYP------LDQKDMGPALRPIDF-GV-PIPSKVEVETSARDYTPP 369 (396)
Q Consensus 298 G~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p------~~~~d~~~~~~~~~~-~~-~~~~~~~v~np~fD~tPp 369 (396)
|+++||+|||++|++||+|+||||||||+|||++..+ +++++. .+...+ +. ..+++++++||.||+|||
T Consensus 240 G~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p---~ev~~~~g~~~~~~~~~v~Np~FD~TP~ 316 (331)
T TIGR00512 240 GDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPP---EEVTHVGGVRIAPPGIDVWNPAFDVTPA 316 (331)
T ss_pred CCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCH---HHhcccCCcccCCCCceeecccccCCCH
Confidence 9999999999999999999999999999999998643 344432 122211 11 246789999999999999
Q ss_pred CCccEEEeCCCCCCC
Q 016064 370 QYLTLLFTDLGVLTP 384 (396)
Q Consensus 370 elIt~iITE~Gv~~P 384 (396)
+|||+||||.|+++|
T Consensus 317 ~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 317 ELITGIITEKGVITP 331 (331)
T ss_pred HHCCEEEccCCccCC
Confidence 999999999999987
No 7
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-66 Score=501.67 Aligned_cols=288 Identities=35% Similarity=0.475 Sum_probs=261.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhcccccCCH
Q 016064 101 DEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDF 180 (396)
Q Consensus 101 ~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~ 180 (396)
+..+...-..+..+|++++++|..+++++++.+..+|.+.++...+.|..+||++++|.|+++.+++. .+..+.
T Consensus 11 ~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~~------~~~~~~ 84 (301)
T COG1184 11 EKLKSMEIRGASWIAIAAAEALEILASDSQAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLRD------SSGGDK 84 (301)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHhc------ccccch
Confidence 33443336778888999999999999999999999999999999999999999999999999777661 144578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHH
Q 016064 181 NSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLAN 260 (396)
Q Consensus 181 ~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~ 260 (396)
++.|+.+++.++.|+++...+.+.|++.|+++|+||++|||||+|++|+.+|+.|++.||+|+|||+||||.+||+.||+
T Consensus 85 ~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak 164 (301)
T COG1184 85 ENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAK 164 (301)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccccccccccCCCCCC
Q 016064 261 ELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM 340 (396)
Q Consensus 261 ~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~ 340 (396)
+|++.||+|++|+||+++++|++||+||+|||+|++||+++||+||+++|++||++++|||||||+|||++++++++...
T Consensus 165 ~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~~~ 244 (301)
T COG1184 165 ELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFVPKTLLDTLVE 244 (301)
T ss_pred HHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeecccccccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CC---CcccCCCCCcCCCCccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhhC
Q 016064 341 GP---ALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 396 (396)
Q Consensus 341 ~~---~~~~~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y~ 396 (396)
.+ +.+... .+...+++++||+||+|||+||++||||.|+++|+.+++++.|+|.
T Consensus 245 ~~~~~~~e~~~--~~~~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i~~e~~~ 301 (301)
T COG1184 245 IELRDPLEVAR--EEPLGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRILRELYG 301 (301)
T ss_pred eeccChhhccc--cCcccCccccccccCCCcHHHhheeeecCCCCCchhHHHHHHHhhC
Confidence 32 222221 1122258899999999999999999999999999999999999984
No 8
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=4.9e-66 Score=508.37 Aligned_cols=283 Identities=30% Similarity=0.399 Sum_probs=256.2
Q ss_pred CCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 016064 91 GKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVT 170 (396)
Q Consensus 91 ~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~ 170 (396)
++.++.|+.|+.|+ ++|.|.++ ++++.+|..+++.+++.+.+|+.+.|+..+++|.++||++++|.|+++++++++.
T Consensus 2 ~~~~~~~~~I~~m~-vrGa~~ia--~aa~~~l~~~~~~~~~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~ 78 (303)
T TIGR00524 2 RTYEDVADAIKSMV-VRGAPAIG--VAAAYGLALAARKIETDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAE 78 (303)
T ss_pred CCHHHHHHHHHhCe-ecChHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHh
Confidence 45678899999999 99999985 9999999988888778899999999999999999999999999999999988774
Q ss_pred hhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecCh--------HHHHHHHHHHHHCCCee
Q 016064 171 RTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFS--------RVVMEVLKMAAQNKKLF 242 (396)
Q Consensus 171 r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S--------~~V~~~L~~A~~~gk~f 242 (396)
+ ..+++++|+.+++.+++|+++...++++|+++|.++|++|++|||||+| ++|+++|+.|+++||+|
T Consensus 79 ~-----~~~~~~~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~ 153 (303)
T TIGR00524 79 N-----GESVEEAKESLLREAIEIIEEDLETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRI 153 (303)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCce
Confidence 2 2468999999999999999998999999999999999999999999999 99999999999999999
Q ss_pred EEEEeCCCCCchh-HHHHHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCc
Q 016064 243 RVLCTEGRPDRSG-LRLANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKP 319 (396)
Q Consensus 243 ~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vP 319 (396)
+|||+||||.+|| +.++++|.+.||||++|+|++++++|+ +||+||+|||+|++||+++||+|||++|++||+|+||
T Consensus 154 ~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vP 233 (303)
T TIGR00524 154 RVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIP 233 (303)
T ss_pred EEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCC
Confidence 9999999999999 777999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEecccccccccccC------CCCCCCCCcccCCC-CC-cCCCCccccccceeccCCCCccEEEeCCCCCCC
Q 016064 320 VYVAAESYKFARLYPL------DQKDMGPALRPIDF-GV-PIPSKVEVETSARDYTPPQYLTLLFTDLGVLTP 384 (396)
Q Consensus 320 vyV~aes~Kf~~~~p~------~~~d~~~~~~~~~~-~~-~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~P 384 (396)
||||||+|||+++.+. ++++ +.+...+ +. ..+++++++||.||+|||+|||+||||.|+++|
T Consensus 234 v~V~a~s~K~~~~~~~g~~i~~e~~~---~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 234 FFVAAPLSTFDTKTSCGEDIVIEERD---PEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIITEKGIITP 303 (303)
T ss_pred EEEecccccccCCCCCccccccccCC---HHHhccccCcccCCCCceeecccccCCCHHHCCEEEcCCCccCc
Confidence 9999999999987543 3332 1111111 11 235689999999999999999999999999987
No 9
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.6e-65 Score=509.69 Aligned_cols=310 Identities=28% Similarity=0.367 Sum_probs=269.8
Q ss_pred HHHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhc
Q 016064 72 SQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSW 151 (396)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~a 151 (396)
.-..+.|..+|+..++.+..+.++.|++|++|+ +||+|.|+ +++..+|.-..+.++..+.+++.+.|+.++++|.++
T Consensus 12 ~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~-vRGApaig--~aaa~g~~l~~~~~~~~~~~~~~~~l~~~~~~L~~a 88 (339)
T PRK06036 12 SVKLIDQTLLPEEYKVIECKTLESLCEAIKSLR-VRGAPALG--AAGGYGIALAARLSKAKDVDELLKDLKVAAETLKST 88 (339)
T ss_pred eEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCc-ccCchHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 334578889999999999999999999999999 99999997 556556654455555668899999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH-----
Q 016064 152 DTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR----- 226 (396)
Q Consensus 152 RPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~----- 226 (396)
|||++||.|++++|++.+.. ..+++++|+.+++.++.|.+++..++++|+++|+++|++|++|||||||+
T Consensus 89 RPTavnL~~a~~r~~~~~~~-----~~~~~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 89 RPTAVNLSWGVDRVLKAALD-----AEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred CCcHhhHHHHHHHHHHHhhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCcccccc
Confidence 99999999999887764432 24689999999999999999999999999999999999999999999996
Q ss_pred ---HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhccc--CCEEEEcceeEeecCCe
Q 016064 227 ---VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGI 300 (396)
Q Consensus 227 ---~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~~--vd~VlvGAd~V~~NG~v 300 (396)
|++++|+.|+++||+|+|||+||||.+||.+| +++|.+.|||||+|+|++++++|++ ||+||+|||+|++|| +
T Consensus 164 ~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v 242 (339)
T PRK06036 164 DWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-V 242 (339)
T ss_pred ccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhhcC-e
Confidence 67899999999999999999999999999987 8999999999999999999999976 999999999999996 9
Q ss_pred eccccHHHHHHHhhhCCCcEEEecccccccccc-----cCCCCCCCCCcccCCCCCcCCCCccccccceeccCCCCccEE
Q 016064 301 INMMGTYQIALVAHSMNKPVYVAAESYKFARLY-----PLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLL 375 (396)
Q Consensus 301 ~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~-----p~~~~d~~~~~~~~~~~~~~~~~~~v~np~fD~tPpelIt~i 375 (396)
+||+|||++|++||+|+|||||+|+++||+... ++|+++..+.... ......+++++++||.||+|||+|||+|
T Consensus 243 ~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g~i~iE~r~~~Ev~~~-~~~~~~~~~v~v~Np~FDvTP~~lIt~i 321 (339)
T PRK06036 243 FNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEGSVKIEERDPDELRYC-GKTQIAPKDVPVYNPAFDATPMENVTAI 321 (339)
T ss_pred ehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCCCcccccCCHHHhccc-cCcccCCCCceeeCcccccCCHHHCCEE
Confidence 999999999999999999999999999998753 3343332221111 0011246789999999999999999999
Q ss_pred EeCCCCCCCchHHHHH
Q 016064 376 FTDLGVLTPSVVSDEL 391 (396)
Q Consensus 376 ITE~Gv~~Ps~v~~~L 391 (396)
|||.|+++|++.++++
T Consensus 322 ITE~Gv~~P~~~~~~~ 337 (339)
T PRK06036 322 ITEKGVFYPPFLLDEV 337 (339)
T ss_pred EccCCcccCCcccccc
Confidence 9999999999887764
No 10
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=8e-65 Score=505.49 Aligned_cols=315 Identities=24% Similarity=0.322 Sum_probs=275.9
Q ss_pred hHHHHHHHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 016064 67 DWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASD 146 (396)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~ 146 (396)
.|-...--.+.|..+|+..++....+.++.|++|++|+ +||+|.|+ ++|..+|...++.....+..++.+.|+.+++
T Consensus 18 ~~~~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~-vRGApaIg--vaAa~glal~~~~~~~~~~~~~~~~l~~~~~ 94 (356)
T PRK08334 18 EYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMT-VRGAPAIG--AAAAFGLALYAETSKAKTKDEFMDGFYKAYE 94 (356)
T ss_pred EEcCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc-ccCcHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 34333444578889999999999999999999999999 99999996 8888888877777655688999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecC--
Q 016064 147 SLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGF-- 224 (396)
Q Consensus 147 ~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~-- 224 (396)
+|.++|||++||.||+++|++++.... . .+++++++.+++.++.|.+++..++++|+++|+++|.+|+ ||||||
T Consensus 95 ~L~~~RPTavnL~~a~~~~~~~~~~~~--~-~~~~~~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~dg~-ILTHcnaG 170 (356)
T PRK08334 95 TLKNTRPTAVNLFWALNRIKKLVEEHL--E-DPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVLPEGN-VLTHCNAG 170 (356)
T ss_pred HHHHcCCcHHhHHHHHHHHHHHHHhhc--c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-EEEecCcc
Confidence 999999999999999999999886442 2 5689999999999999999999999999999999999999 999997
Q ss_pred ------hHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEe
Q 016064 225 ------SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVV 295 (396)
Q Consensus 225 ------S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~ 295 (396)
++|++++|+.|+++||.|+|||+||||.+||.+| +++|.+.|||||+|+|++++++|+ +||+||+|||+|+
T Consensus 171 ~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~ 250 (356)
T PRK08334 171 SLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIV 250 (356)
T ss_pred hhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEe
Confidence 5779999999999999999999999999999999 799999999999999999999996 7999999999999
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecccccccccccCCCC---CCCCCcccCCC-CCcCCCCccccccceeccCCCC
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQK---DMGPALRPIDF-GVPIPSKVEVETSARDYTPPQY 371 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~---d~~~~~~~~~~-~~~~~~~~~v~np~fD~tPpel 371 (396)
+||+++||+|||++|++||+|+|||||||+.+||+..++.++. +.+.+.+...+ +....++++++||.||||||+|
T Consensus 251 ~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~~~~~~~~v~NPaFDvTPp~l 330 (356)
T PRK08334 251 ANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIAPDVDVYNPAFDVTPHKY 330 (356)
T ss_pred cCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCcccCCCcceecccccCCCHHH
Confidence 9999999999999999999999999999999999876443221 11112222222 2223347899999999999999
Q ss_pred ccEEEeCCCCCCCchHH
Q 016064 372 LTLLFTDLGVLTPSVVS 388 (396)
Q Consensus 372 It~iITE~Gv~~Ps~v~ 388 (396)
||+||||.|+++|++..
T Consensus 331 It~iITE~Gv~~P~~~~ 347 (356)
T PRK08334 331 LTGIITDRGVVWPPFER 347 (356)
T ss_pred CCEEEcCCCccCCchHH
Confidence 99999999999998654
No 11
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=9.9e-64 Score=486.02 Aligned_cols=272 Identities=43% Similarity=0.628 Sum_probs=234.0
Q ss_pred ChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHH
Q 016064 111 DLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIER 190 (396)
Q Consensus 111 ~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~ 190 (396)
+.++|++++++|+++++.+++++.++|++.|+.++++|.++||++++|.|+++++++.+.+.. +..++++.|+.+++.
T Consensus 5 s~~~ai~al~~L~~~i~~~~~~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~--~~~~~~~~~~~l~~~ 82 (282)
T PF01008_consen 5 SPAIAIAALEALRQVISDSKATTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLD--ESEDFEEAKQSLLEA 82 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHH--TTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhh--cccchHHHHHHHHHH
Confidence 456689999999999999999999999999999999999999999999999999999766543 456799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE
Q 016064 191 AEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVK 270 (396)
Q Consensus 191 i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt 270 (396)
++.|.+++..+.++|++++.++|++|++|||||+|++|+++|++|+++|++|+|||+||||.+||+.||++|++.||+|+
T Consensus 83 i~~~~~e~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~ 162 (282)
T PF01008_consen 83 IDEFLDEIEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVT 162 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEE
T ss_pred HHHHHhHHHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcchHHHHhccc-CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccccccccccCCCCCC---CCCccc
Q 016064 271 LLIDSAVAYTMDE-VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM---GPALRP 346 (396)
Q Consensus 271 lI~Dsav~~~m~~-vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~---~~~~~~ 346 (396)
+|+|++++++|++ ||+|++|||+|++||+++||+||+++|++||+++|||||+||+|||++.+++++... .++.+.
T Consensus 163 ~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e~~~~~~v 242 (282)
T PF01008_consen 163 LIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNELRDPQEV 242 (282)
T ss_dssp EE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-B--THHH
T ss_pred EEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhhcccccee
Confidence 9999999999999 999999999999999999999999999999999999999999999999998876443 233333
Q ss_pred CCCCC--cCCCCccccccceeccCCCCccEEEeCCCCCCC
Q 016064 347 IDFGV--PIPSKVEVETSARDYTPPQYLTLLFTDLGVLTP 384 (396)
Q Consensus 347 ~~~~~--~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~P 384 (396)
.++.. ..++++++.||.||+|||+|||+||||.|+++|
T Consensus 243 ~~~~~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 243 LPFDGSSIVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp HEETTEEESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred eccCCcccccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 32222 235589999999999999999999999999998
No 12
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=5e-63 Score=479.50 Aligned_cols=266 Identities=30% Similarity=0.408 Sum_probs=233.3
Q ss_pred chhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhcc
Q 016064 95 RAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSA 174 (396)
Q Consensus 95 ~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~ 174 (396)
+-.+-|+.|+ ++|+|.++ ++|..+|....+.. +..++.+.|+...++|.++|||+++|.|+++++
T Consensus 8 ~~~~~i~~m~-vrGAp~i~--~~aa~~l~~~a~~~---~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~--------- 72 (275)
T PRK08335 8 EILEEMKAER-IRGASWLA--KKGAEAYLLLAEEL---DGEELENALKELREEIPEVNPTMASLYNLARFI--------- 72 (275)
T ss_pred HHHHHHhhce-ecCHHHHH--HHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHh---------
Confidence 3455566666 66999886 77777776444332 236788999999999999999999999998654
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCch
Q 016064 175 LEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRS 254 (396)
Q Consensus 175 ~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~e 254 (396)
+.++.++.+++.+++|.+++..++++|+++|+++|.+|++|||||||++|+++|+.|+++||+|+|||+||||.+|
T Consensus 73 ----~~~~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~q 148 (275)
T PRK08335 73 ----PITNNPELVKSRAEEFLRLMEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYE 148 (275)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchh
Confidence 1245678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccccc
Q 016064 255 GLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYP 334 (396)
Q Consensus 255 G~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p 334 (396)
|.+||++|.+.||||++|+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|||++.++
T Consensus 149 G~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~ 228 (275)
T PRK08335 149 GLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELK 228 (275)
T ss_pred HHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccceecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCcccCCCCCcCCCCccccccceeccCCCCccEEEeCCCCCCCch
Q 016064 335 LDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSV 386 (396)
Q Consensus 335 ~~~~d~~~~~~~~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~ 386 (396)
.+ ++..+.+ + ..+++++++||.||+|||+|||+||||.|+++|+.
T Consensus 229 ~~--~i~ieer--~---~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 229 SE--EVELVER--P---YARQGHRVRNVLFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred CC--Ccccccc--C---CCCCCceecCcCccCCCHHHCCEEEccCCccCCCC
Confidence 43 3332211 1 13567899999999999999999999999998864
No 13
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.6e-61 Score=478.28 Aligned_cols=292 Identities=26% Similarity=0.370 Sum_probs=245.0
Q ss_pred HHHHHHHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q 016064 68 WLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDS 147 (396)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~ 147 (396)
|....-..+.|..+|+..++.+..+.++.+++|++|+ +||+|.++ ++|..+|...... ...++.++++
T Consensus 17 ~~~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~-vRGAp~ig--~~aa~g~~l~~~~---------~~~~~~~~~~ 84 (329)
T PRK06371 17 YEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMV-VRGAPAIG--VTAAYGLAMASKN---------GENMDEAVEK 84 (329)
T ss_pred EeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCe-ecChHHHH--HHHHHHHHHHHHh---------HHHHHHHHHH
Confidence 4333334577889999999999999999999999999 99999996 5555555432221 1557889999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH-
Q 016064 148 LKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR- 226 (396)
Q Consensus 148 L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~- 226 (396)
|.++|||++||.|+++++++.. .+ ++.++++.+++..++++|+++|.++|++|++|||||||+
T Consensus 85 L~~~RPtavnL~~a~~~~~~~~--------~~--------~~~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 85 IRSTRPTAYDLFKAIRYMNSNE--------FD--------MNAARRYAMEIIGRSKKIGEYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHhcCcchhhHHHHHHHHHhhc--------Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEeCCCCc
Confidence 9999999999999997764321 11 345556777777899999999999999999999999985
Q ss_pred -------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEee
Q 016064 227 -------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVE 296 (396)
Q Consensus 227 -------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~~ 296 (396)
|++++|+.|+++||+|+|||+||||.+||.+| |++|.+.||||++|+|++++++|+ +||+||+|||+|++
T Consensus 149 la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a 228 (329)
T PRK06371 149 LAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIAS 228 (329)
T ss_pred ceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEec
Confidence 46899999999999999999999999999987 999999999999999999999996 59999999999999
Q ss_pred cCCeeccccHHHHHHHhhhCCCcEEEecccccccc------cccCCCCCCCCCcccCCC-CC-cCCCCccccccceeccC
Q 016064 297 SGGIINMMGTYQIALVAHSMNKPVYVAAESYKFAR------LYPLDQKDMGPALRPIDF-GV-PIPSKVEVETSARDYTP 368 (396)
Q Consensus 297 NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~------~~p~~~~d~~~~~~~~~~-~~-~~~~~~~v~np~fD~tP 368 (396)
||+++||+|||++|++||+|+||||||||+++|+. .+++++++..+ ...+ +. ..+.+++++||.||+||
T Consensus 229 NG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~e---v~~~~g~~~~p~~~~v~Np~FDvTP 305 (329)
T PRK06371 229 NGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENE---VLEINGCRIGPQESHARNPAFDVTP 305 (329)
T ss_pred CCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHH---eeccCCeecCCCCccccCcCccCCC
Confidence 99999999999999999999999999999776664 24555544322 2222 11 24667899999999999
Q ss_pred CCCccEEEeCCCCCCCchHHHH
Q 016064 369 PQYLTLLFTDLGVLTPSVVSDE 390 (396)
Q Consensus 369 pelIt~iITE~Gv~~Ps~v~~~ 390 (396)
|+|||+||||.|+++|++|+++
T Consensus 306 ~elIt~iITE~Gv~~p~~i~~~ 327 (329)
T PRK06371 306 NEYVTGFITEYGIFKPNELWKL 327 (329)
T ss_pred HHHCCEEEccCCccChHHhhhc
Confidence 9999999999999999999884
No 14
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-61 Score=463.88 Aligned_cols=305 Identities=29% Similarity=0.397 Sum_probs=269.1
Q ss_pred HHHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHhc
Q 016064 73 QEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSE-AKTMMELEIELKKASDSLKSW 151 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~-~~t~~eL~~~L~~~~~~L~~a 151 (396)
--.+.|..+|+...+.+..+.++..++|++|. +||+|.|. ++|--.+.-..+..+ .++..|+.+.|+.+.+.|.++
T Consensus 14 v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~-VRGAPAIg--v~AayG~alaa~~~~~~~~~~e~~~~le~a~~~l~~t 90 (346)
T COG0182 14 VKLLDQRLLPFEEKYVECKTYEDVAEAIKDMV-VRGAPAIG--VAAAYGLALAARESKNDSKGEEFIEALEKAAETLKST 90 (346)
T ss_pred EEEEecccCCceEEEEEeccHHHHHHHHHhhh-ccCCcHHH--HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHhhc
Confidence 34567888999999999999999999999999 99999997 555555544444444 345789999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH-----
Q 016064 152 DTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR----- 226 (396)
Q Consensus 152 RPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~----- 226 (396)
|||++||.|+++++++.+.+.. +.++.++.+.+.+.++.+++...+..|+++|+++|.+|++||||||.+
T Consensus 91 RPTAvNLfwal~rm~~~~~~~~-----~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~ 165 (346)
T COG0182 91 RPTAVNLFWALDRMLNAAKEAI-----EVKEPKESILQEAEEIAEEDLEANRAIGENGAELLPDGDTVLTHCNAGALATV 165 (346)
T ss_pred CchhHHHHHHHHHHHHHHhhcc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEeeecCCceeec
Confidence 9999999999999988776542 268899999999999999999999999999999999999999999977
Q ss_pred ---HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhc--ccCCEEEEcceeEeecCCe
Q 016064 227 ---VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTM--DEVDMVFVGADGVVESGGI 300 (396)
Q Consensus 227 ---~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m--~~vd~VlvGAd~V~~NG~v 300 (396)
|.+++++.|+.+||..+||+.|+||++||.+| |++|.+.|||||+|+|++++++| +.+|+|++|||+|+.||++
T Consensus 166 ~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdv 245 (346)
T COG0182 166 GYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDV 245 (346)
T ss_pred CccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcc
Confidence 47999999999999999999999999999999 99999999999999999999999 5699999999999999999
Q ss_pred eccccHHHHHHHhhhCCCcEEEeccccccccc------ccCCCCCCCCCcccCCCCC-cCCCCccccccceeccCCCCcc
Q 016064 301 INMMGTYQIALVAHSMNKPVYVAAESYKFARL------YPLDQKDMGPALRPIDFGV-PIPSKVEVETSARDYTPPQYLT 373 (396)
Q Consensus 301 ~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~------~p~~~~d~~~~~~~~~~~~-~~~~~~~v~np~fD~tPpelIt 373 (396)
.||+|||++|++||+|||||||+++...|+.. +|+|+++..+...+. +. -.|++++++||.||+||++|||
T Consensus 246 aNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~--g~riap~~v~~yNPAFDvTP~~lIt 323 (346)
T COG0182 246 ANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVG--GVRIAPEGVEAYNPAFDVTPPELIT 323 (346)
T ss_pred hhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeec--cEEeCCCCccccCccccCChHHhcc
Confidence 99999999999999999999999999999864 566666544432221 22 3678899999999999999999
Q ss_pred EEEeCCCCCCCchH
Q 016064 374 LLFTDLGVLTPSVV 387 (396)
Q Consensus 374 ~iITE~Gv~~Ps~v 387 (396)
+||||.|++.|...
T Consensus 324 gIITEkGv~~p~~~ 337 (346)
T COG0182 324 GIITEKGVFTPPFE 337 (346)
T ss_pred eeeeccceecCchh
Confidence 99999999999743
No 15
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-60 Score=473.68 Aligned_cols=295 Identities=25% Similarity=0.338 Sum_probs=261.4
Q ss_pred hHHHHHHHHh---cCCChHHHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 016064 98 SVIDEFNNWR---KQPDLAEAVAAIRALAAVIRNSEAKT----MMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVT 170 (396)
Q Consensus 98 ~vI~~~~~~l---~~~~ia~~IAAi~aL~~vI~~~~~~t----~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~ 170 (396)
.+++...+.. --.+.++||++|++|+++|+++..+- .++|...|+.++++|.+|||.+++|+|+++.+++.|.
T Consensus 236 Av~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~ 315 (556)
T KOG1467|consen 236 AVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEIS 315 (556)
T ss_pred HHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHh
Confidence 3444444333 34488999999999999999985432 3689999999999999999999999999999998887
Q ss_pred hhcccccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCC
Q 016064 171 RTSALEYEDFNSARSRLIERAEKFG-EISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEG 249 (396)
Q Consensus 171 r~~~~~~~~~~~~k~~Lie~i~~f~-e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Es 249 (396)
+.- ...+..+.|+.|++.|+.|+ +++..|.+.|.+++.+.|+|||+|||||+|++|..+|.+|++.|++|+|+|+||
T Consensus 316 ~L~--~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDS 393 (556)
T KOG1467|consen 316 KLP--ISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDS 393 (556)
T ss_pred hCC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeC
Confidence 653 23346899999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 250 RPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 250 rP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
||.+||+++++.|..+||+|+|+..++++|+|.++++||+||++|++||.+++++||.++||+|++|||||+||||+|||
T Consensus 394 RP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 394 RPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKF 473 (556)
T ss_pred CCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC---CCCCCCccc----------CCCCCcCCCCccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhh
Q 016064 330 ARLYPLDQ---KDMGPALRP----------IDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQL 394 (396)
Q Consensus 330 ~~~~p~~~---~d~~~~~~~----------~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~ 394 (396)
++++.+|. ++++++... .-.++....++.+.|.+||+||||||+++|||+|+++|++|+.+|++.
T Consensus 474 ~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~ 551 (556)
T KOG1467|consen 474 HERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREK 551 (556)
T ss_pred hhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhh
Confidence 99998874 444443211 011445566788999999999999999999999999999999888763
No 16
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-57 Score=435.85 Aligned_cols=297 Identities=26% Similarity=0.378 Sum_probs=270.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccc---
Q 016064 99 VIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSAL--- 175 (396)
Q Consensus 99 vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~~--- 175 (396)
-|..+++-+-+.+-+.++.++..|+.+|.+.+|+++.+|++.++..++.|..+.|+.++.+|.+++..+.+++...+
T Consensus 14 fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE~~~l~~ 93 (353)
T KOG1465|consen 14 FIAALKKRLVRGSYAIAIETLNLLRQIISRERWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREEVLELTG 93 (353)
T ss_pred HHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 45556644444577778999999999999999999999999999999999999999999999999988877654321
Q ss_pred ----ccC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH
Q 016064 176 ----EYE-------------------------DFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR 226 (396)
Q Consensus 176 ----~~~-------------------------~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~ 226 (396)
+.. +..++|+.+++.+++++.+++.+++.|+.++.++|+++++|||+|.|+
T Consensus 94 ~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihsnEviLT~g~Sr 173 (353)
T KOG1465|consen 94 GATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIHSNEVILTLGSSR 173 (353)
T ss_pred cCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhccCceEEecCccH
Confidence 000 134699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccH
Q 016064 227 VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGT 306 (396)
Q Consensus 227 ~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT 306 (396)
||++||+.|.++||+|+|+|+|+.|.+||+.||+.|.++||+++.|+|++++++|++|+|||+|+++|++|||+....|+
T Consensus 174 TV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~NGgl~~~~G~ 253 (353)
T KOG1465|consen 174 TVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLANGGLRAPSGV 253 (353)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecCCCeeccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEecccccccccccCCCC---CCCCCcccCCCCC-cCCCCccccccceeccCCCCccEEEeCCCCC
Q 016064 307 YQIALVAHSMNKPVYVAAESYKFARLYPLDQK---DMGPALRPIDFGV-PIPSKVEVETSARDYTPPQYLTLLFTDLGVL 382 (396)
Q Consensus 307 ~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~---d~~~~~~~~~~~~-~~~~~~~v~np~fD~tPpelIt~iITE~Gv~ 382 (396)
+++|++||+|.+|||||++.||+||.||.++. +++.+.+.++|+. +....+++.||.|||+||||||+|||+.|.+
T Consensus 254 ~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~~~~~~~~v~nP~fDyvppeLVtLFIsNtgg~ 333 (353)
T KOG1465|consen 254 HTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEGDPAGRVDVLNPAFDYVPPELVTLFISNTGGV 333 (353)
T ss_pred HHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccccCcccceeecccccccCChhheeEEEecCCCC
Confidence 99999999999999999999999999999874 4566677777765 3556789999999999999999999999999
Q ss_pred CCchHHHHHHhhh
Q 016064 383 TPSVVSDELIQLY 395 (396)
Q Consensus 383 ~Ps~v~~~L~~~Y 395 (396)
.||+||+++.++|
T Consensus 334 ~PSyvyRl~~d~Y 346 (353)
T KOG1465|consen 334 APSYVYRLMEDLY 346 (353)
T ss_pred ChHHHHHHHHHhc
Confidence 9999999999998
No 17
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-54 Score=408.23 Aligned_cols=312 Identities=24% Similarity=0.324 Sum_probs=264.0
Q ss_pred HHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCC
Q 016064 74 EAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDT 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRP 153 (396)
.++.|-.+|+.+-|..+...++.|.+|+.|+ +||+|.|+ .++++..+.++-. ...++...+.+.|....++|.++||
T Consensus 14 ~vLDQllLP~e~kYi~v~~v~d~~~vIk~Mq-VRGAPaIA-ivg~Lslaveiq~-~~~~~~ds~~~~i~~kl~fLvssRP 90 (354)
T KOG1468|consen 14 EVLDQLLLPYETKYIPVRGVSDAWAVIKSMQ-VRGAPAIA-IVGSLSLAVEIQK-KGFPGSDSLKEFIINKLNFLVSSRP 90 (354)
T ss_pred hHHHHhhCcCceeEEEecchhHHHHHHHHHh-hcCccHHH-HHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHHHhcCc
Confidence 4667778999999999999999999999999 99999998 6777777777544 3455566688999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------CceEEeecChH-
Q 016064 154 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFD------GCTILVHGFSR- 226 (396)
Q Consensus 154 t~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~d------g~~ILT~~~S~- 226 (396)
|+++|.++.+.++..+.+.. .+...+++.+++..+.+++++...++.|+.+|++++.+ .-+||||||.+
T Consensus 91 TAVnl~~aa~~lk~i~~~~~----~~~~~~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGS 166 (354)
T KOG1468|consen 91 TAVNLANAANELKPIAASED----KSEKAKREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGS 166 (354)
T ss_pred hhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCceEEEEeecCCc
Confidence 99999999877666554432 33467899999999999999999999999999987743 34999999976
Q ss_pred -------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEee
Q 016064 227 -------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVE 296 (396)
Q Consensus 227 -------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~~ 296 (396)
|.+++++..++.|+.-+|||+|+||++||.|| |.+|....||.|+|+||++++.|+ +||.|++|||+|..
T Consensus 167 LATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVar 246 (354)
T KOG1468|consen 167 LATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVAR 246 (354)
T ss_pred hhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCCEEEEcccceec
Confidence 57999999999999999999999999999999 999999999999999999999996 99999999999999
Q ss_pred cCCeeccccHHHHHHHhhhCCCcEEEecccccccccccC------CCCCCCCCcccCC--CCC-cCCCCccccccceecc
Q 016064 297 SGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPL------DQKDMGPALRPID--FGV-PIPSKVEVETSARDYT 367 (396)
Q Consensus 297 NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~------~~~d~~~~~~~~~--~~~-~~~~~~~v~np~fD~t 367 (396)
||+..||+|||++|++|||||+||||+++...++..... |++...+ ...+. .+. ....++.||||.||+|
T Consensus 247 NGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~E-m~~v~gg~~v~Iaapgi~vwnPAFDvT 325 (354)
T KOG1468|consen 247 NGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAE-MTHVTGGEGVRIAAPGINVWNPAFDVT 325 (354)
T ss_pred cCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchH-heeecCCcceEecCCCCCccCccccCC
Confidence 999999999999999999999999999999888765432 3332111 11111 011 2456799999999999
Q ss_pred CCCCccEEEeCCCCCCCchHHHHHHh
Q 016064 368 PPQYLTLLFTDLGVLTPSVVSDELIQ 393 (396)
Q Consensus 368 PpelIt~iITE~Gv~~Ps~v~~~L~~ 393 (396)
|++||++||||.|+++|....+...+
T Consensus 326 Pa~LItgIiTe~g~f~~~~~~~~~~~ 351 (354)
T KOG1468|consen 326 PAELITGIITEKGVFTPEELEEAILK 351 (354)
T ss_pred HHHHHHHHhhhccccChHHhcchhhh
Confidence 99999999999999999876655443
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.4e-50 Score=387.89 Aligned_cols=219 Identities=24% Similarity=0.290 Sum_probs=181.9
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeec
Q 016064 144 ASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHG 223 (396)
Q Consensus 144 ~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~ 223 (396)
.++.|..+||.+..+.|-+++.+ .- ...+.++++. .+..+.+.|+++|.++| +|++|||||
T Consensus 34 ~~~~l~~~~~~Ma~~~n~~~~~~----~~---~~~~~~~~~~-----------~~~~~~~~~~~~A~~~i-~~dvILT~s 94 (253)
T PRK06372 34 IIKDLKNYFFGMGLVRNVCDSII----SG---PNLRPKNLKL-----------GIEKHEKMAIEHAKPLF-NDSVIGTIS 94 (253)
T ss_pred HHHHHHHhCcchHHHHHHHHHHH----cc---CcCCHHHHHH-----------HHHHHHHHHHHHHHhhc-CCCEEEEeC
Confidence 67778889999988887664332 11 1122333333 34477888999999999 678999999
Q ss_pred ChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeecc
Q 016064 224 FSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303 (396)
Q Consensus 224 ~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nk 303 (396)
+|++|+.+|.++ ++.|+|||+||||.+||+.||++|.+.||+|++|+|++++++|++||+|++|||+|++||+++||
T Consensus 95 ~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nk 171 (253)
T PRK06372 95 SSQVLKAFISSS---EKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHK 171 (253)
T ss_pred CcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeeh
Confidence 999999999764 34589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhhCCCcEEEecccccccccccCCCCCCCCCcccCCCCCcCCCCccccccceeccCCCCccEEEeCCCCCC
Q 016064 304 MGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLT 383 (396)
Q Consensus 304 iGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~~~~~~~~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~ 383 (396)
+||+++|++||+|+|||||||++|||++.++.++... ...... ....++++++||+||+|||+|||+||||.|+++
T Consensus 172 vGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~-~~~~~~---~~~~~~l~v~Np~FD~TPpelI~~iITE~Gi~~ 247 (253)
T PRK06372 172 NGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPN-FKNHPC---SEWNIDIPCINRYFDKTPPDLIDYYINENGFVK 247 (253)
T ss_pred hhHHHHHHHHHHcCCCEEEEeeccccCCCCccccccc-cccccc---ccCCCCCceeCcCcCCCCHHHCCEEEcCCCccc
Confidence 9999999999999999999999999999877654321 001100 122457899999999999999999999999999
Q ss_pred CchHH
Q 016064 384 PSVVS 388 (396)
Q Consensus 384 Ps~v~ 388 (396)
|++|+
T Consensus 248 pssV~ 252 (253)
T PRK06372 248 PSDVN 252 (253)
T ss_pred cccCC
Confidence 99874
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.84 E-value=0.00021 Score=68.10 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC---eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchH
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK---LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSA 276 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk---~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa 276 (396)
...++|++.|+++|++|++|. ++.++|+..+++...+..+ +++++ + .+...+..|.+.||++..+.+
T Consensus 5 ~~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvV-t------~S~~~a~~l~~~gi~v~~l~~-- 74 (220)
T PRK00702 5 ELKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGV-P------TSEASTELAKELGIPLFDLNE-- 74 (220)
T ss_pred HHHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEE-C------CcHHHHHHHHhCCCeEEcHHH--
Confidence 357789999999999999875 5777777777766644221 34443 2 234556777778998763222
Q ss_pred HHHhcccCCEEEEcceeEeecCCeeccccHHHH--HHHhhhCCCcEEEeccccccccc
Q 016064 277 VAYTMDEVDMVFVGADGVVESGGIINMMGTYQI--ALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 277 v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~l--Al~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
..++|..|.|||.|-.+++++-.-|-..+ -++|+.. ..+++++++.||.+.
T Consensus 75 ----~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A-~~~vil~D~sK~v~~ 127 (220)
T PRK00702 75 ----VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAA-KRFICIVDESKLVDV 127 (220)
T ss_pred ----CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhc-CcEEEEEEcchhhhh
Confidence 46899999999999999888877554433 3444433 358999999999874
No 20
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.80 E-value=0.00036 Score=67.69 Aligned_cols=124 Identities=20% Similarity=0.353 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CC-CCEEEEc----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LD-VPVKLLI---- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~G-I~vtlI~---- 273 (396)
...+.|+..|+.+|.+|++|+. +.|+|+..+.+.... .+.++|+ + .+...+..|.+ .+ +++.++-
T Consensus 76 ~~K~~IA~~Aa~~I~~g~tIfl-d~GtT~~~la~~L~~-~~~ltVv-T------nsl~ia~~l~~~~~~~~v~l~GG~~~ 146 (256)
T PRK10434 76 HKKELIAEAAVSLIHDGDSIIL-DAGSTVLQMVPLLSR-FNNITVM-T------NSLHIVNALSELDNEQTILMPGGTFR 146 (256)
T ss_pred HHHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhcc-CCCeEEE-E------CCHHHHHHHhhCCCCCEEEEECCEEe
Confidence 4568999999999999999985 666666666655532 2346655 2 24456777775 33 4554432
Q ss_pred ---chHHHH----hc--ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 274 ---DSAVAY----TM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 274 ---Dsav~~----~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
.+.+|. .+ =++|+.|+|+++|..+||+...--...+--++-.....+|+++++.||...
T Consensus 147 ~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 147 KKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRK 214 (256)
T ss_pred CCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCc
Confidence 122222 22 369999999999998887765333344555555678899999999999753
No 21
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.78 E-value=0.00026 Score=67.37 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=78.8
Q ss_pred HHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC----eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH
Q 016064 202 RKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK----LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV 277 (396)
Q Consensus 202 ~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk----~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav 277 (396)
.+.|++.|+++|++|++|. .+.++|+..+++...+..+ ++.|+ + .+...+..|.+.|+++..+.
T Consensus 2 K~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvV-t------~S~~~a~~l~~~gi~v~~l~---- 69 (218)
T TIGR00021 2 KRAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGV-P------TSKQTAELARELGIPLSSLD---- 69 (218)
T ss_pred HHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEE-e------CCHHHHHHHHHCCCCEEcHh----
Confidence 3578999999999999875 5677777766666544222 33433 2 23466788888899985221
Q ss_pred HHhcccCCEEEEcceeEeecCCeeccccHH-HH-HHHhhhCCCcEEEeccccccccc
Q 016064 278 AYTMDEVDMVFVGADGVVESGGIINMMGTY-QI-ALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 278 ~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~-~l-Al~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
-..++|..|.|||.|-.+++++ |-|.- .+ --+......-+++++++.||.++
T Consensus 70 --~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~ 123 (218)
T TIGR00021 70 --EVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVASASKRFIVIADESKLVDK 123 (218)
T ss_pred --HCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHHHhhCcEEEEEEchhhhcc
Confidence 2458999999999999999885 44332 22 11122244578999999999874
No 22
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.75 E-value=0.00029 Score=66.72 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=80.0
Q ss_pred HHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHC----CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH
Q 016064 202 RKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQN----KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV 277 (396)
Q Consensus 202 ~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~----gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav 277 (396)
.+.|++.|+++|.+|++|. .+.++|+..+.+...+. ++.++|+ +- +...+..|.+.|+++..+-+
T Consensus 2 K~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-Tn------S~~~a~~l~~~~i~vi~lg~--- 70 (213)
T cd01398 2 KRAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PT------SFQTEELARELGIPLTDLDE--- 70 (213)
T ss_pred HHHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eC------cHHHHHHHHhCCCeEEeCCC---
Confidence 4678999999999999876 47777777666665432 1345554 32 23456667777888766552
Q ss_pred HHhcccCCEEEEcceeEeecCCeeccccHHHHHH-HhhhCCCcEEEeccccccccc
Q 016064 278 AYTMDEVDMVFVGADGVVESGGIINMMGTYQIAL-VAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 278 ~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl-~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
--++|++|+|||+|-.++.+...-|-..+-- +......-+|+++++.||...
T Consensus 71 ---~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~ 123 (213)
T cd01398 71 ---VPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVER 123 (213)
T ss_pred ---ccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhccc
Confidence 2479999999999998876654444433332 223456688999999999874
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.71 E-value=0.00067 Score=61.36 Aligned_cols=124 Identities=31% Similarity=0.397 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC-CCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL-DVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~-GI~vtlI~----- 273 (396)
...++|++.++++|++|++|.- +.|+++..+.+...+ .+.++|+ + .+...+..|.+. ++++.++-
T Consensus 4 ~~K~~IA~~A~~~I~~~~~Ifl-d~GtT~~~la~~L~~-~~~ltVv-T------nsl~ia~~l~~~~~~~vi~~GG~~~~ 74 (161)
T PF00455_consen 4 EEKRAIARKAASLIEDGDTIFL-DSGTTTLELAKYLPD-KKNLTVV-T------NSLPIANELSENPNIEVILLGGEVNP 74 (161)
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-ECchHHHHHHHHhhc-CCceEEE-E------CCHHHHHHHHhcCceEEEEeCCEEEc
Confidence 4568999999999999999775 555666666655543 3355655 2 234567788776 44444332
Q ss_pred --chHHH----Hhc--ccCCEEEEcceeEeecCCee-ccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 274 --DSAVA----YTM--DEVDMVFVGADGVVESGGII-NMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 274 --Dsav~----~~m--~~vd~VlvGAd~V~~NG~v~-nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
.+.+| ..+ =++|+.|+|+++|..++|+. ....-..+--+.-+....+|+++++.||...
T Consensus 75 ~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 75 KSLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 11111 122 36999999999999965554 5566666666667777889999999999764
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.59 E-value=0.0014 Score=64.25 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~----- 273 (396)
...+.|+..++++|.+|++|.- +.|+|+..+.+... ..+.++|+. .+...+..|.+ .++++.++-
T Consensus 91 ~~K~~IA~~Aa~~I~dgd~Ifl-d~GtT~~~la~~L~-~~~~ltVvT-------nsl~ia~~l~~~~~~~v~llGG~~~~ 161 (269)
T PRK09802 91 AMKRSVAKAAVELIQPGHRVIL-DSGTTTFEIARLMR-KHTDVIAMT-------NGMNVANALLEAEGVELLMTGGHLRR 161 (269)
T ss_pred HHHHHHHHHHHhhCCCCCEEEE-CCchHHHHHHHhcC-cCCCeEEEe-------CCHHHHHHHHhCCCCEEEEECCEEec
Confidence 3567899999999999999986 55555555555542 234577662 23456777764 366655432
Q ss_pred --chHHH----Hhc--ccCCEEEEcceeEeecCCeec-cccHHHHHHHhhhCCCcEEEecccccccc
Q 016064 274 --DSAVA----YTM--DEVDMVFVGADGVVESGGIIN-MMGTYQIALVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 274 --Dsav~----~~m--~~vd~VlvGAd~V~~NG~v~n-kiGT~~lAl~Ak~~~vPvyV~aes~Kf~~ 331 (396)
.+.+| ..+ =++|+.|+||++|-.++|+.. ..--..+--++-....-+|+++++.||..
T Consensus 162 ~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 162 QSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNR 228 (269)
T ss_pred CCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCC
Confidence 11111 122 269999999999998877654 44555666566666778899999999975
No 25
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.45 E-value=0.0022 Score=62.14 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC-CCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL-DVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~-GI~vtlI~----- 273 (396)
...+.|+..|+.+|.+|++|.. +.|+|+..+.+.... +.++|+ + .+...|..|.+. ++++.++-
T Consensus 78 ~~K~~IA~~Aa~~I~~g~~Ifl-d~GsT~~~la~~L~~--~~ltVv-T------nsl~ia~~l~~~~~~~v~l~GG~~~~ 147 (251)
T PRK13509 78 DEKVRIAKAASQLCNPGESVVI-NCGSTAFLLGRELCG--KPVQII-T------NYLPLANYLIDQEHDSVIIMGGQYNK 147 (251)
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHhCC--CCeEEE-e------CCHHHHHHHHhCCCCEEEEECCeEcC
Confidence 3567999999999999999886 445555555555432 345555 2 233556777643 44443321
Q ss_pred ------chHHHHhcc--cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 274 ------DSAVAYTMD--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 274 ------Dsav~~~m~--~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
... ...++ ++|+.|+||++|-.+|-.-.......+--++-....-+|++|++.||...
T Consensus 148 ~~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~ 213 (251)
T PRK13509 148 SQSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGER 213 (251)
T ss_pred CcceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCce
Confidence 111 23343 58999999999997764444544455544555567788999999999764
No 26
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.44 E-value=0.003 Score=61.23 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~----- 273 (396)
...+.|+..|+.+|.+|++|.- +.|+|+..+.+.... .+.++|+ +- +...+..|.. .++++.++-
T Consensus 76 ~~K~~IA~~Aa~~I~~g~tIfl-D~GtT~~~la~~L~~-~~~ltVv-TN------sl~ia~~l~~~~~~~villGG~~~~ 146 (252)
T PRK10906 76 EEKERIARKVASQIPNGATLFI-DIGTTPEAVAHALLN-HSNLRIV-TN------NLNVANTLMAKEDFRIILAGGELRS 146 (252)
T ss_pred HHHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhcC-CCCcEEE-EC------cHHHHHHHhhCCCCEEEEECCEEec
Confidence 4568999999999999999986 445555555555432 3445555 32 3355677764 455544331
Q ss_pred --chHHHHh----c--ccCCEEEEcceeEeecCCe-eccccHHHHHHHhhhCCCcEEEecccccccccccCCCCCCCCCc
Q 016064 274 --DSAVAYT----M--DEVDMVFVGADGVVESGGI-INMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPAL 344 (396)
Q Consensus 274 --Dsav~~~----m--~~vd~VlvGAd~V~~NG~v-~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~~~~~ 344 (396)
.+.+|.. + =.+|+.|+|+++|-.+||+ .+...-..+--..-....-+|++|++.||....
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~~----------- 215 (252)
T PRK10906 147 RDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNA----------- 215 (252)
T ss_pred CCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCcc-----------
Confidence 2222221 2 3699999999999977665 444455666666666677889999999997531
Q ss_pred ccCCCCCcCCCCccccccceeccCCCCccEEEeCCC
Q 016064 345 RPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLG 380 (396)
Q Consensus 345 ~~~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~G 380 (396)
.|-+.|-+-|+.+|||..
T Consensus 216 ------------------~~~~~~l~~id~iITD~~ 233 (252)
T PRK10906 216 ------------------MVNMGSISMVDAVYTDQL 233 (252)
T ss_pred ------------------eeEecCHHHCCEEEECCC
Confidence 244555667788888854
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=97.26 E-value=0.0091 Score=57.49 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~----- 273 (396)
...+.|+..++++|++|++|.- +.|+|+..+.+.... +.++|+ + .+...|..|.. .++.+.++-
T Consensus 78 ~~K~~IA~~Aa~lI~~gd~Ifl-d~GtT~~~l~~~L~~--~~ltVv-T------Ns~~ia~~l~~~~~~~vil~GG~~~~ 147 (240)
T PRK10411 78 AHKADIAREALAWIEEGMVIAL-DASSTCWYLARQLPD--INIQVF-T------NSHPICQELGKRERIQLISSGGTLER 147 (240)
T ss_pred HHHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHhhCC--CCeEEE-e------CCHHHHHHHhcCCCCEEEEECCEEeC
Confidence 4668899999999999998885 555555555555432 245555 2 23455667764 455543321
Q ss_pred --chHHHH----hc--ccCCEEEEcceeEeecCCeec-cccHHHHHHHhhhCCCcEEEecccccccc
Q 016064 274 --DSAVAY----TM--DEVDMVFVGADGVVESGGIIN-MMGTYQIALVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 274 --Dsav~~----~m--~~vd~VlvGAd~V~~NG~v~n-kiGT~~lAl~Ak~~~vPvyV~aes~Kf~~ 331 (396)
.+.+|. .+ =++|++|+|+++|..+||+.. ..=...+--.+-+...-+|+++++.||..
T Consensus 148 ~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 148 KYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 111111 22 269999999999987766664 44445555556667788899999999975
No 28
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=96.84 E-value=0.018 Score=55.69 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEc-----
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLI----- 273 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~----- 273 (396)
...+.|+..|+++|.+|++|+.=+.|. +..+.+... ..+.++|+ +- +...+..|.+ .++++.++-
T Consensus 77 ~~K~~IA~~Aa~lI~~g~tIflD~GtT-~~~la~~L~-~~~~ltvv-Tn------sl~i~~~l~~~~~~~villGG~~~~ 147 (252)
T PRK10681 77 EEKRRAAQLAATLVEPNQTLFFDCGTT-TPWIIEAID-NELPFTAV-CY------SLNTFLALQEKPHCRAILCGGEFHA 147 (252)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCcc-HHHHHHhcC-CCCCeEEE-EC------CHHHHHHHhhCCCCEEEEECcEEec
Confidence 346899999999999999999755544 444444432 22345555 32 3345667764 345544332
Q ss_pred --chHHH----Hhc--ccCCEEEEcceeEeecCCee-ccccHHHHHHHhhhCCCcEEEecccccccc
Q 016064 274 --DSAVA----YTM--DEVDMVFVGADGVVESGGII-NMMGTYQIALVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 274 --Dsav~----~~m--~~vd~VlvGAd~V~~NG~v~-nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~ 331 (396)
.+.+| ..+ =++|+.|+|+++|...+|+. ....-..+.-+.-.....+|++|++.||..
T Consensus 148 ~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 148 SNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred CcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 11111 122 36999999999998776653 445555555555556777899999999975
No 29
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.66 E-value=0.027 Score=54.64 Aligned_cols=124 Identities=23% Similarity=0.342 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCC-CCEEEE------
Q 016064 200 KARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLD-VPVKLL------ 272 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~G-I~vtlI------ 272 (396)
.....|++.++.+|++|++|.--+.|.+ ..+.... ...++++|+. -+...+..|.... +.+.++
T Consensus 76 ~eK~~IA~~Aa~lI~~g~~ifld~GTT~-~~la~~L-~~~~~ltviT-------Nsl~ia~~l~~~~~~~vi~~GG~~~~ 146 (253)
T COG1349 76 EEKRAIAKAAATLIEDGDTIFLDAGTTT-LALARAL-PDDNNLTVIT-------NSLNIAAALLEKPNIEVILLGGTVRK 146 (253)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcHH-HHHHHHh-CcCCCeEEEe-------CCHHHHHHHHhCCCCeEEEeCcEEEc
Confidence 4677899999999999999987555553 3333333 2233366662 3456677777663 333111
Q ss_pred -cchH----HHHhc--ccCCEEEEcceeEeecCCeeccc-cHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 273 -IDSA----VAYTM--DEVDMVFVGADGVVESGGIINMM-GTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 273 -~Dsa----v~~~m--~~vd~VlvGAd~V~~NG~v~nki-GT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
..+- .-..+ =++|+.|+|+++|-.++|+...- .-..+.-.+-+...-+|+++.+.||...
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 147 KSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 1111 11222 37999999999999888777655 4444556666678889999999999864
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=95.91 E-value=0.15 Score=50.03 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCe--eE-EEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHH
Q 016064 202 RKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKL--FR-VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVA 278 (396)
Q Consensus 202 ~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~--f~-ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~ 278 (396)
.+..+..|.+++++|.+ +=.|-.+||..++++..+..+. ++ +.++-+ +.+.+..+.+.|||+.-+.+
T Consensus 36 K~~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpT-----S~~T~~~a~~~GIpl~~l~~---- 105 (264)
T PLN02384 36 KKIAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPT-----SKKTHEQAVSLGIPLSDLDS---- 105 (264)
T ss_pred HHHHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcC-----cHHHHHHHHHcCCcEecccc----
Confidence 33456667789999877 5678888888787766553221 33 454433 23556777788999777655
Q ss_pred HhcccCCEEEEcceeEeecCCeeccccHHHHH--HHhhhCCCcEEEeccccccccc
Q 016064 279 YTMDEVDMVFVGADGVVESGGIINMMGTYQIA--LVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 279 ~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lA--l~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
..++|..|=|||-|-.|+.++---|-..+- ++|. ....|+++++..|+.+.
T Consensus 106 --v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~ 158 (264)
T PLN02384 106 --HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKH 158 (264)
T ss_pred --CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceecc
Confidence 568999999999999998877666643221 1222 23468999999998763
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=95.08 E-value=0.38 Score=46.29 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCC--CeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHH
Q 016064 201 ARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK--KLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVA 278 (396)
Q Consensus 201 a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g--k~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~ 278 (396)
..+..+..|++++++|.+ +=.|..+|+..+++...+.. ..+++.++-+ ..+.+..+.+.|||+.-+.+
T Consensus 7 ~K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~Vpt-----S~~t~~~a~~~Gipl~~l~~---- 76 (228)
T PRK13978 7 LKLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCT-----SNKIAFLAKELGIKICEIND---- 76 (228)
T ss_pred HHHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeC-----cHHHHHHHHHcCCcEechhh----
Confidence 344566778889999876 66788888888877655432 2245554433 23455667788999776655
Q ss_pred HhcccCCEEEEcceeEeecCCeeccccHHHHH--HHhhhCCCcEEEecccccccc
Q 016064 279 YTMDEVDMVFVGADGVVESGGIINMMGTYQIA--LVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 279 ~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lA--l~Ak~~~vPvyV~aes~Kf~~ 331 (396)
..++|..|=|||-|-.|+.++--=|-..+= ++|. ....|+++++..|+.+
T Consensus 77 --~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~-~A~~~iii~D~sK~v~ 128 (228)
T PRK13978 77 --VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDE-MASRFVVVVDETKIVQ 128 (228)
T ss_pred --CCceeEEEecCceecCCccEEecCcHHHHHHHHHHH-hcCcEEEEEeCcceec
Confidence 368999999999999998887555532211 1221 3346889999899876
No 32
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=92.30 E-value=2.1 Score=41.13 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHH
Q 016064 201 ARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAY 279 (396)
Q Consensus 201 a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~ 279 (396)
..+..+..|++++.+| .|+=.|-.+|+..|+....+..+ .+.+..+-| +.+.+..+.+.||++.-+.+
T Consensus 6 ~K~~aa~~A~~~v~~g-mviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~T-----S~~t~~l~~~~GI~v~~l~~----- 74 (227)
T COG0120 6 LKKAAAKAALEYVKDG-MVIGLGTGSTAAYFIEALGRRVKGELDIGGVPT-----SFQTEELARELGIPVSSLNE----- 74 (227)
T ss_pred HHHHHHHHHHHHhcCC-CEEEEcCcHHHHHHHHHHHHhhccCccEEEEeC-----CHHHHHHHHHcCCeecCccc-----
Confidence 3445567778899886 45567888999999988753211 145554333 33667788899998887766
Q ss_pred hcccCCEEEEcceeEeecCCeeccccHHHHH-HHhhhCCCcEEEeccccccccc
Q 016064 280 TMDEVDMVFVGADGVVESGGIINMMGTYQIA-LVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 280 ~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lA-l~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
.+.+|..|=|||=|-.++.++---|-..+- =+-....+.|+|+++..|+.+.
T Consensus 75 -~~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~ 127 (227)
T COG0120 75 -VDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEV 127 (227)
T ss_pred -cCccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhh
Confidence 467999999999999998888766654432 0112345678999999999764
No 33
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=92.05 E-value=1.3 Score=45.69 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHh----hccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHH-hCCCCEEEE
Q 016064 198 SYKARKIIAMLSQ----DFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELA-KLDVPVKLL 272 (396)
Q Consensus 198 ~~~a~~~Ia~~a~----~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~-~~GI~vtlI 272 (396)
+..|++.|+++.. ..|..+|++||-|.|..++-.|...++.|-+ + +=-||++ -+-..++ -.||+|.+.
T Consensus 105 ~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aN--I--LlPrPGf---p~Y~~~a~~~~lEVR~y 177 (447)
T KOG0259|consen 105 ILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGAN--I--LLPRPGF---PLYDTRAIYSGLEVRYY 177 (447)
T ss_pred cHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCc--e--ecCCCCC---chHHHhhhhcCceeEee
Confidence 4467777887743 2567789999999999999888776654443 3 3357765 3333333 357877764
Q ss_pred c----------chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 273 I----------DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 273 ~----------Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
- ...+.++..+=++.++=-.==-.+|+|+++----.+|-.|++++++|+.
T Consensus 178 dlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 178 DLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 2 3566676655444443222234679999999999999999999999974
No 34
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=91.38 E-value=0.9 Score=43.55 Aligned_cols=153 Identities=25% Similarity=0.289 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhccccCc-eEEeecChHHHHHHHHHHHHCCCe--e----EEEEeCCCCCchhHHHHHHHHhCC-CCEEE
Q 016064 200 KARKIIAMLSQDFIFDGC-TILVHGFSRVVMEVLKMAAQNKKL--F----RVLCTEGRPDRSGLRLANELAKLD-VPVKL 271 (396)
Q Consensus 200 ~a~~~Ia~~a~~~I~dg~-~ILT~~~S~~V~~~L~~A~~~gk~--f----~ViV~EsrP~~eG~~la~~L~~~G-I~vtl 271 (396)
..++.|+..+++.|+||+ +-|=+|--+.|.+++.+ |.+ | -++-.+..|.. | +--..|...| -+|+.
T Consensus 6 ~~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~----~~~~~~~seng~Lg~g~~p~~-~-~~d~~linaG~~~vt~ 79 (225)
T COG2057 6 TEREMIAKRAARELKDGDYVNLGIGLPTLVANYAPE----GMNVLLQSENGLLGVGPAPLP-G-EEDADLINAGKQPVTA 79 (225)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCCchHHhHhhccc----ccceEEecCceeEEecCCCCC-C-CCCcchhhCCCceeEe
Confidence 467888888999999998 44556766666666542 111 0 11222233322 1 1112344443 56666
Q ss_pred -----EcchHHHHhc---ccCCEEEEcceeEeecCCeeccc----------cHHHHHHHhhhCCCcEEEecccccccccc
Q 016064 272 -----LIDSAVAYTM---DEVDMVFVGADGVVESGGIINMM----------GTYQIALVAHSMNKPVYVAAESYKFARLY 333 (396)
Q Consensus 272 -----I~Dsav~~~m---~~vd~VlvGAd~V~~NG~v~nki----------GT~~lAl~Ak~~~vPvyV~aes~Kf~~~~ 333 (396)
..|++.+..| +++|.-|+||-=|-.+|.+.|-+ |+--++.-||+ |||.-+..|=..
T Consensus 80 ~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gakk----vii~m~H~~k~g-- 153 (225)
T COG2057 80 LPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAKK----VIVVMEHTKKSG-- 153 (225)
T ss_pred cCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCcE----EEEEeeeecccC--
Confidence 6688888877 78999999999999999999864 44444443332 777665443210
Q ss_pred cCCCCCCCCCcccCCCCCcCCCCccccccceeccCCCCccEEEeCCCCCCCc
Q 016064 334 PLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPS 385 (396)
Q Consensus 334 p~~~~d~~~~~~~~~~~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps 385 (396)
.+ +..+. =.+=.|...-++.||||+|++.+.
T Consensus 154 ------~~---ki~~~------------ctlplt~~~~v~~iiTdl~V~~~~ 184 (225)
T COG2057 154 ------VG---KILKE------------CTLPLTGNGCVDRVITDLAVFEFD 184 (225)
T ss_pred ------CC---cccCc------------ccccccCCCCceEEEeccEEEEec
Confidence 00 01110 012345566777888888877654
No 35
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=87.49 E-value=29 Score=38.11 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=34.6
Q ss_pred EEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 244 ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
+++.-++-..+-.++++.+++.|+++..|++. -+.+.+.+|.+|.
T Consensus 520 I~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 520 VAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 33555555566677899999999999999995 5666788998874
No 36
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=87.39 E-value=23 Score=33.13 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=26.2
Q ss_pred cccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 281 MDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 281 m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+++-|.+|+- ...|.--+ ...++-.||+.|.|+++++..
T Consensus 107 ~~~gDvli~i----S~SG~s~~---v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 107 GHAGDVLLAI----STRGNSRD---IVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCCCCEEEEE----eCCCCCHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 5666777752 33454222 456678899999999998853
No 37
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=86.60 E-value=4.9 Score=39.29 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhccccCceEEeecChHHHHHHHHH---HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH
Q 016064 201 ARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKM---AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV 277 (396)
Q Consensus 201 a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~---A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav 277 (396)
+.+.-+.++.+....+-.|+=.|..+||.....+ ...+++.-.|+++.+ +.+-++.+.+.|||+....+.
T Consensus 27 ~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h-- 99 (261)
T KOG3075|consen 27 AKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH-- 99 (261)
T ss_pred HHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC--
Confidence 3334445555555555566667777776544433 355577667775533 345578889999999887764
Q ss_pred HHhcccCCEEEEcceeEeecCCeeccccHHHH-HHHhhhCCCcEEEecccccccc
Q 016064 278 AYTMDEVDMVFVGADGVVESGGIINMMGTYQI-ALVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 278 ~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~l-Al~Ak~~~vPvyV~aes~Kf~~ 331 (396)
+.+|..|=|||-|-+|..++---|-... -..---..+.|+|++...|+.+
T Consensus 100 ----p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~ 150 (261)
T KOG3075|consen 100 ----PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSK 150 (261)
T ss_pred ----ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccch
Confidence 6899999999999999887755553211 1111124467899999999984
No 38
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.47 E-value=2.6 Score=34.82 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=63.8
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHH----hcccCCEEEEcceeE
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAY----TMDEVDMVFVGADGV 294 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~----~m~~vd~VlvGAd~V 294 (396)
|+..|+++.-..+++...+.+ .+|+++|..|. .++.+.+.|+++.+-.-..... -+.+++.|++..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~-----~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPE-----RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHH-----HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcH-----HHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 567888888777777777634 67788887654 3788889998766632221211 2367888888766
Q ss_pred eecCCeeccccHHHHHHHhhh-CC-CcEEEecccccc
Q 016064 295 VESGGIINMMGTYQIALVAHS-MN-KPVYVAAESYKF 329 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~-~~-vPvyV~aes~Kf 329 (396)
+...+..+++.||. ++ +++++.+...+.
T Consensus 72 -------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 72 -------DDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp -------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred -------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 67788999999997 33 567666654443
No 39
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=86.00 E-value=16 Score=35.31 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=33.0
Q ss_pred CchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 252 DRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 252 ~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
..+-.+.++.+++.|+++..|+|+.-+.+-+.+|.+|...
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 3444577899999999999999988888888899999753
No 40
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=84.58 E-value=13 Score=37.63 Aligned_cols=136 Identities=10% Similarity=0.068 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-------------eeEEEE
Q 016064 180 FNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-------------LFRVLC 246 (396)
Q Consensus 180 ~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-------------~f~ViV 246 (396)
.+++++.+.+.++.|... ....+.+.+..+++..-...++|-|.+..+...|..+.+.|. ..+|++
T Consensus 26 ~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~ 104 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI-KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVL 104 (363)
T ss_pred CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEE
Confidence 345566665555544321 122344444444454444678888888877777766655553 237776
Q ss_pred eCCCCCch--hHHHHHHHHhCCCCEEEEc-----c-hHHHHhc-ccCCEEEE-cceeEeecCCeeccccHHHHHHHhhhC
Q 016064 247 TEGRPDRS--GLRLANELAKLDVPVKLLI-----D-SAVAYTM-DEVDMVFV-GADGVVESGGIINMMGTYQIALVAHSM 316 (396)
Q Consensus 247 ~EsrP~~e--G~~la~~L~~~GI~vtlI~-----D-sav~~~m-~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~Ak~~ 316 (396)
. +|.+. |.....-+...|..+.++. | ..+...+ ++...+++ -... ...|.+.. + ..++-+|+++
T Consensus 105 ~--~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~-~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 105 P--KGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHH-CVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--CccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCC-CCcCCcCC-H--HHHHHHHHHc
Confidence 4 34332 2122334455676555442 2 3344444 33433332 1100 12333333 2 4688899999
Q ss_pred CCcEEE
Q 016064 317 NKPVYV 322 (396)
Q Consensus 317 ~vPvyV 322 (396)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999987
No 41
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=84.48 E-value=2.5 Score=41.43 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=69.5
Q ss_pred eecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCC----EEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 221 VHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVP----VKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 221 T~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~----vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
..|.|+-+-. +++++.++|...+|.+.+-++... ..+.+...++. +-+....++..+|+.||.||--|.-+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~---~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPK---FLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccc---cchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 3455665533 445556667556666666554432 22234444433 333334677888999999998887776
Q ss_pred ecCC-------eeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 296 ESGG-------IINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 296 ~NG~-------v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
..|. -+|--||-++.-+|++++|+-+|.+.|.-
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~ 118 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSIS 118 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcc
Confidence 6662 34679999999999999999999887754
No 42
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=82.51 E-value=31 Score=33.58 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=35.1
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
+.-++-..+-..+++.+.+.|+++..|++..-+.+-+.+|.+|.-
T Consensus 194 iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 194 VSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 444444445566788899999999999998888888889999874
No 43
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=81.67 E-value=31 Score=34.50 Aligned_cols=116 Identities=20% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchh-HHHHHHHHhCCCCEEEEcc
Q 016064 198 SYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSG-LRLANELAKLDVPVKLLID 274 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI~D 274 (396)
...+++.+++.-- .....+++|.|.+..+...+..+.. .++ -+|++.+.. +.+ ....+.+...|+++..++.
T Consensus 44 ~~~~r~~la~~~g--~~~~~i~~t~~~t~a~~~al~~~~~~~~~~-~~vv~~~~~--~~s~~~~~~~~~~~G~~v~~v~~ 118 (379)
T TIGR03402 44 VEEAREQVAKLLG--AEPDEIIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVE--HPAVLSLCQHLEKQGYKVTYLPV 118 (379)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHHHHHhcCCC-CeEEEcccc--cHHHHHHHHHHHHcCCEEEEEcc
Confidence 3345555554321 1234578887777766666654432 222 244443321 222 2334556678999888852
Q ss_pred --------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 275 --------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 275 --------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..+...+ ++..+|++ .. +....|.+..+ ..++-+|++++++++|
T Consensus 119 ~~~g~~~~~~l~~~i~~~~~lv~i-~~-~~n~tG~~~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 119 DEEGRLDLEELRAAITDDTALVSV-MW-ANNETGTIFPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred CCCCcCCHHHHHHhcCCCcEEEEE-Ec-ccCCeeecccH--HHHHHHHHHcCCEEEE
Confidence 1233334 33333333 22 22223344443 3688899999998876
No 44
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=81.50 E-value=17 Score=30.97 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHhCCCCEEEEc--chHHHH-hc-----ccCCEEEEcceeEeecCCeecc-ccHHHHHHHhhhCC--CcEEEec
Q 016064 262 LAKLDVPVKLLI--DSAVAY-TM-----DEVDMVFVGADGVVESGGIINM-MGTYQIALVAHSMN--KPVYVAA 324 (396)
Q Consensus 262 L~~~GI~vtlI~--Dsav~~-~m-----~~vd~VlvGAd~V~~NG~v~nk-iGT~~lAl~Ak~~~--vPvyV~a 324 (396)
+.+.|+++..+. ....+. ++ .++|++++|+..- |++-.. .|+.....+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 345677665433 212232 22 5689999999864 333322 35444555677778 9999985
No 45
>PLN02651 cysteine desulfurase
Probab=81.22 E-value=37 Score=33.91 Aligned_cols=117 Identities=18% Similarity=0.041 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHC--CCeeEEEEeCCC-CCchhHHHHHHHHhCCCCEEEEcc
Q 016064 198 SYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQN--KKLFRVLCTEGR-PDRSGLRLANELAKLDVPVKLLID 274 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~--gk~f~ViV~Esr-P~~eG~~la~~L~~~GI~vtlI~D 274 (396)
...+++.+++..- ...+.+++|-|.|..+...+..+... ++.-+|++.+.. |.. . .....+...|+++..++-
T Consensus 45 ~~~~r~~la~~~g--~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~-~-~~~~~~~~~g~~v~~v~~ 120 (364)
T PLN02651 45 VEKARAQVAALIG--ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCV-L-DSCRHLQQEGFEVTYLPV 120 (364)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHH-H-HHHHHHHhcCCEEEEEcc
Confidence 4445566655321 12346777766666554444443221 223467765432 221 1 123445677998888752
Q ss_pred --------hHHHHhcc-cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 275 --------SAVAYTMD-EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 275 --------sav~~~m~-~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..+...+. +...|++. ..-...|. +..+ ..++-+||++|++++|
T Consensus 121 ~~~~~~d~~~l~~~i~~~t~lv~v~-~~~n~tG~-~~~l--~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 121 KSDGLVDLDELAAAIRPDTALVSVM-AVNNEIGV-IQPV--EEIGELCREKKVLFHT 173 (364)
T ss_pred CCCCcCCHHHHHHhcCCCcEEEEEE-CCCCCcee-cccH--HHHHHHHHHcCCEEEE
Confidence 22334443 44444442 11122333 3332 3588889999998877
No 46
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=80.79 E-value=22 Score=29.55 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=59.2
Q ss_pred ceEEeecChHH--HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-----hHHHHhc--ccCCEE
Q 016064 217 CTILVHGFSRV--VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-----SAVAYTM--DEVDMV 287 (396)
Q Consensus 217 ~~ILT~~~S~~--V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-----sav~~~m--~~vd~V 287 (396)
.++++.+.+.- ...+.+...+ ..|+++.+++ .++.|.+.|++|+.+.. ..+...+ +++|.|
T Consensus 2 ~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~v 71 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLV 71 (110)
T ss_pred eEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEE
Confidence 45666665442 3344444443 4588887754 56778899999877632 3344443 689999
Q ss_pred EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 288 FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
+--.+ +.- .....|.+--+|-.++||++-..+
T Consensus 72 In~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~ 103 (110)
T cd01424 72 INTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLD 103 (110)
T ss_pred EECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHH
Confidence 87643 211 223457899999999999985443
No 47
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=80.68 E-value=9 Score=35.98 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=61.5
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||..|.+.+..+-++...+.|-.+.|+-. .+. .-..+|.+.| .++++.-.--...+..++.|++..+--
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp--~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE--ELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC--CCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 477999999999888877777777876665533 322 1224566666 677766432223345666666543221
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
-+| ..++..|+..++||.++-+.
T Consensus 81 -----~ln----~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 81 -----ELN----RRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred -----HHH----HHHHHHHHHcCCEEEECCCc
Confidence 122 47888899999999987643
No 48
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=79.92 E-value=36 Score=33.82 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC-c-eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE
Q 016064 193 KFGEISYKARKIIAMLSQDFIFDG-C-TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVK 270 (396)
Q Consensus 193 ~f~e~~~~a~~~Ia~~a~~~I~dg-~-~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt 270 (396)
.|.+....+++.+++..-- .++ + +++|-|.|..+..++......|. +|+|.. +..-|.++.......|+++.
T Consensus 32 ~~~~~~~~~r~~la~l~~~--~~~~~~i~~t~~~t~al~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~a~~~g~~~~ 105 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATA--EEGYTSVLLQGSGTFAVEAVIGSAVPKDG--KLLVVI--NGAYGARIVQIAEYLGIPHH 105 (363)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCCceEEEEcCCCHHHHHHHHHhcCCCCC--eEEEEe--CChhhHHHHHHHHHcCCceE
Confidence 3444445555566553211 232 3 55666666666666655544343 444332 22335555555567899988
Q ss_pred EEcc--------hHHHHhccc-CC-EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 271 LLID--------SAVAYTMDE-VD-MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 271 lI~D--------sav~~~m~~-vd-~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.++. ..+...+.+ .+ +++.-+..=...| +.+.+ ..++-+|++++++++|=
T Consensus 106 ~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG-~~~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 106 VVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTG-ILNPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCcc-ccCcH--HHHHHHHHHcCCEEEEE
Confidence 7753 234444432 11 2222222223344 34443 57888999999977763
No 49
>PRK02947 hypothetical protein; Provisional
Probab=79.61 E-value=61 Score=31.23 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=31.6
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHH-----------HHhcccCCEEEE
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAV-----------AYTMDEVDMVFV 289 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav-----------~~~m~~vd~Vlv 289 (396)
+.-|.-..+=.++++.+.+.|+++..|++..- ..+.+.+|.||.
T Consensus 113 iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 113 VSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 33343334445679999999999999999753 456677898885
No 50
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=79.47 E-value=41 Score=35.47 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred ccCCEEEEcce-eEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 282 DEVDMVFVGAD-GVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 282 ~~vd~VlvGAd-~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
-.+|..|.||+ +|..+|++++..|..+.-+++ ..-.-++++.+.-|+.+.
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~ 230 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPT 230 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCC
Confidence 46999999999 999999999999988855554 333444567788888765
No 51
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=79.16 E-value=46 Score=32.64 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=36.9
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcce
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd 292 (396)
+.=|+-..+-.+.++..++.|+++..|+|+...-+-+.+|.++....
T Consensus 184 iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 184 ISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred EeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 33344345556779999999999999999988888899999988643
No 52
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.11 E-value=12 Score=39.17 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=48.0
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.+..|+.+|...+=+.+...+.+.| ++|.+.|.++......+.+.|.+.||++..-.+.. ....+|.|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4678888888776555544445545 46888888876555566788999998775433222 334678888765
No 53
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.74 E-value=22 Score=36.66 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=44.9
Q ss_pred hhccccCceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc
Q 016064 210 QDFIFDGCTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 210 ~~~I~dg~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~ 273 (396)
...|+.||+++..|....+..+.....+. ...-+++|+-. +.-|+.+++.|.+.|++|++|.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 34567789999999988877766544322 22356666655 5668889999999999998884
No 54
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=78.04 E-value=55 Score=32.34 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=51.3
Q ss_pred cCceEEeecChHHHHHHHHHHHHC---CCeeEEEEeCC-CCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQN---KKLFRVLCTEG-RPDRSGLRLANELAKLDVPVKLLID--------SAVAYTMD 282 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~---gk~f~ViV~Es-rP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m~ 282 (396)
..++++|-|.+..+..++...... ..+-+|++.+. .|.. ......+...|+++..++. ..+...+.
T Consensus 59 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~--~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 59 TEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAV--LEPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHH--HHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 345777765555555555443321 11135655433 2221 1123445667999888762 22333333
Q ss_pred -cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+...|++- ..-...|.+. .+ ..++-+|++++++++|
T Consensus 137 ~~~~lv~~~-~~~n~tG~~~-~~--~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 137 PDTLLVSIM-HVNNETGSIQ-PI--REIAEVLEAHEAFFHV 173 (353)
T ss_pred CCCEEEEEE-cccCCceecc-CH--HHHHHHHHHcCCEEEE
Confidence 33233322 2222334333 32 6688889999998887
No 55
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=77.95 E-value=40 Score=33.24 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=68.4
Q ss_pred HHHHHHhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE----EeCCCCCch--------h----HHHHHHHHhCC
Q 016064 204 IIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL----CTEGRPDRS--------G----LRLANELAKLD 266 (396)
Q Consensus 204 ~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi----V~EsrP~~e--------G----~~la~~L~~~G 266 (396)
-+++.+.+.|.+ ..|+.+|-.++=-.+.+...+.| .++.++ |.++.-..| | ..|++.|.+.+
T Consensus 19 L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~IN 97 (268)
T PRK15116 19 LYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQIN 97 (268)
T ss_pred HhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHC
Confidence 355566666654 57888888776555555555567 556655 222221111 1 14566777654
Q ss_pred --CCEEEEcc----hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc-ccccc
Q 016064 267 --VPVKLLID----SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES-YKFAR 331 (396)
Q Consensus 267 --I~vtlI~D----sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes-~Kf~~ 331 (396)
+.|+.+.+ ..+..++ .+.|.||...|.+.+ -..+.-.|+.+++||+.+... -|++|
T Consensus 98 P~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~---------k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 98 PECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRP---------KAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred CCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 44444432 2233344 468888877775432 235677789999999988655 44444
No 56
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=77.82 E-value=22 Score=37.25 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=54.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh--HHHHHHHHhCCCCEEEEcc----hHHHHhcccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG--LRLANELAKLDVPVKLLID----SAVAYTMDEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG--~~la~~L~~~GI~vtlI~D----sav~~~m~~vd~VlvG 290 (396)
..|++-+....+...|....+.|. +|++... .+.| ..+...|...|++++++.| ..+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~Gd--~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAGD--HIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCC--EEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 456665666555555544443343 6666532 2223 2335667778999988862 234444533344444
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+.....-+.+.. -..++-+||++|++|+|
T Consensus 161 ~e~~~Np~~~v~d--i~~I~~la~~~gi~liv 190 (437)
T PRK05613 161 GETFANPQADVLD--IPAVAEVAHRNQVPLIV 190 (437)
T ss_pred EECCCCCCCcccC--HHHHHHHHHHcCCeEEE
Confidence 2333322123333 45678889999999887
No 57
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=77.70 E-value=49 Score=34.45 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------C-ceEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchh
Q 016064 186 RLIERAEKFGEISYKARKIIAMLSQDFIFD--------G-CTILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSG 255 (396)
Q Consensus 186 ~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~d--------g-~~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG 255 (396)
.+++..+.|..++.....+....+.+.+.+ + -.|....-+..+.+...=+..+.+. +|. +-.|--++.+
T Consensus 183 ~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T~ 261 (388)
T COG0426 183 ELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNTE 261 (388)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCHH
Confidence 677777888887777766666666665554 1 1333333455555555444433333 444 4455444433
Q ss_pred ---HHHHHHHHhCCCCEEEEcch--HHHHhc---ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 256 ---LRLANELAKLDVPVKLLIDS--AVAYTM---DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 256 ---~~la~~L~~~GI~vtlI~Ds--av~~~m---~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+.+|+.|.+.|+.|.++-++ ....++ .+++.+++|+-.+ |++..-++++..--+.+..++....++.++|
T Consensus 262 ~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~ 339 (388)
T COG0426 262 KMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGSY 339 (388)
T ss_pred HHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEecc
Confidence 34477888999998887653 456665 6789999998776 4579999999999999987766667777777
Q ss_pred cccc
Q 016064 328 KFAR 331 (396)
Q Consensus 328 Kf~~ 331 (396)
--+.
T Consensus 340 GW~g 343 (388)
T COG0426 340 GWSG 343 (388)
T ss_pred CCCC
Confidence 5544
No 58
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=77.37 E-value=29 Score=34.50 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=55.2
Q ss_pred ceEEeecChHH-----HHHHHHHHH----HCCCeeEEEEeCCCCCchhHHHHHHHHhC-CCCEEEEcchHHHHhcccCCE
Q 016064 217 CTILVHGFSRV-----VMEVLKMAA----QNKKLFRVLCTEGRPDRSGLRLANELAKL-DVPVKLLIDSAVAYTMDEVDM 286 (396)
Q Consensus 217 ~~ILT~~~S~~-----V~~~L~~A~----~~gk~f~ViV~EsrP~~eG~~la~~L~~~-GI~vtlI~Dsav~~~m~~vd~ 286 (396)
.+|+.++.|+- ....+.+|. +...+++++++-+.|. .-..+.+.+.+. |+++.++. ..+..++..+|.
T Consensus 187 ~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl 264 (380)
T PRK00025 187 RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA 264 (380)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE
Confidence 46677766642 122333332 2334567665533222 123344455566 78877654 467888999999
Q ss_pred EEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 287 VFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+++.+ |+..+ =|-.+|+|+++.-..
T Consensus 265 ~v~~s-------------G~~~l--Ea~a~G~PvI~~~~~ 289 (380)
T PRK00025 265 ALAAS-------------GTVTL--ELALLKVPMVVGYKV 289 (380)
T ss_pred EEECc-------------cHHHH--HHHHhCCCEEEEEcc
Confidence 99842 66554 567789999987543
No 59
>PRK07582 cystathionine gamma-lyase; Validated
Probab=77.10 E-value=26 Score=35.50 Aligned_cols=96 Identities=19% Similarity=0.122 Sum_probs=56.9
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHHH-HHHhCCCCEEEEcchHHH-HhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLAN-ELAKLDVPVKLLIDSAVA-YTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la~-~L~~~GI~vtlI~Dsav~-~~m~~vd~VlvGA 291 (396)
..+.|++-+.+..+..++....+.| -+|++.+ |.+.+. .+++ .|...|+++..+....-. ..+++.++|++.
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 3467777666665555554444334 4677653 554443 4444 466789999998754222 445666666653
Q ss_pred eeEeecCCeecccc----HHHHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMG----TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiG----T~~lAl~Ak~~~vPvyV 322 (396)
. .-|..| -..++-+|++++++++|
T Consensus 140 -~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 2 223333 35778888889987766
No 60
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.56 E-value=18 Score=37.35 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcce
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd 292 (396)
.+.+|+..|.++.=+.+-+.+.+.|. +|.+.+..+...=.+...+|.+.|+.+.. .......+++.|.|+.++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEEECCC
Confidence 46788888988855555555565564 56666665422223345677777876332 2212234577898888764
No 61
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=76.46 E-value=2.7 Score=38.56 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCCCchh---HHHHHHHHhCCCCEEEEcchHHHH-hcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 248 EGRPDRSG---LRLANELAKLDVPVKLLIDSAVAY-TMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 248 EsrP~~eG---~~la~~L~~~GI~vtlI~Dsav~~-~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
-||-+..+ ..+|..|.+.|++|.+...+++.. -++..|.|++||..-+ |..=..++.+.-.-...-.++|+-+.
T Consensus 8 str~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 8 STRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred ecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 34444443 456889999999999999999887 5789999999995432 55666677777666666677886544
Q ss_pred c
Q 016064 324 A 324 (396)
Q Consensus 324 a 324 (396)
|
T Consensus 86 ~ 86 (175)
T COG4635 86 S 86 (175)
T ss_pred E
Confidence 3
No 62
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=75.80 E-value=12 Score=35.98 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=60.1
Q ss_pred eEEeecC-hHHHHHHHHHHHHCCCeeEEEEeCCCCCc---hhHHHHHHHHhCCCCEE-EEcchHHHHhcccCCEEEEcce
Q 016064 218 TILVHGF-SRVVMEVLKMAAQNKKLFRVLCTEGRPDR---SGLRLANELAKLDVPVK-LLIDSAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 218 ~ILT~~~-S~~V~~~L~~A~~~gk~f~ViV~EsrP~~---eG~~la~~L~~~GI~vt-lI~Dsav~~~m~~vd~VlvGAd 292 (396)
.|..++. ......+|..+.+.....+++|=+ .|.. ....+..++.. ...+. +..+..+..+|+++|.|+.-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 4444444 245778888877766567776655 4632 22234444433 33344 45567888899999999754
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+.++++-|-.+|+||++++.++
T Consensus 207 -------------nStvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 -------------NSTVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred -------------CCHHHHHHHHcCCceEEecCcc
Confidence 2357788888999999998663
No 63
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=75.59 E-value=35 Score=29.01 Aligned_cols=37 Identities=8% Similarity=0.185 Sum_probs=28.5
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.++|++++|+++ | ...+.| ....-+.++-++||+|+=
T Consensus 102 ~~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 102 YDMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIVP 138 (144)
T ss_pred hCCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEec
Confidence 589999999985 2 344578 455577888999999974
No 64
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=75.51 E-value=44 Score=30.19 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcc--ccCceEEeecChHH----HHHHHHHHHHCCCeeEEEEeCCC-CCchh-HHHHHHHHhCCCCEE
Q 016064 199 YKARKIIAMLSQDFI--FDGCTILVHGFSRV----VMEVLKMAAQNKKLFRVLCTEGR-PDRSG-LRLANELAKLDVPVK 270 (396)
Q Consensus 199 ~~a~~~Ia~~a~~~I--~dg~~ILT~~~S~~----V~~~L~~A~~~gk~f~ViV~Esr-P~~eG-~~la~~L~~~GI~vt 270 (396)
+.|-..+++...+++ ..+..|+.+|.++. -..+-+.+++.|.+..|++.... ...+- +.-.+.+.+.|+++.
T Consensus 6 E~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp HHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 346667777777777 66778888776552 33344445666888888755443 33322 333667788898776
Q ss_pred EE-cchHHHHhcccCCEEEEcceeEeecCCeecccc-HHHHHHHhhhCCCcEEE
Q 016064 271 LL-IDSAVAYTMDEVDMVFVGADGVVESGGIINMMG-TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 271 lI-~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiG-T~~lAl~Ak~~~vPvyV 322 (396)
.. .+......+..+|.|| |+++..|--=.--| ...+.-.+++++.|++.
T Consensus 86 ~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 86 ELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp SSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred eccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 53 3444444566788886 67777763322223 33344445666777543
No 65
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=75.40 E-value=6 Score=33.97 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=61.5
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCC-CchhHHHHHHHH--hCCCCEEEEcchHHHHhcccCCEEEEccee
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRP-DRSGLRLANELA--KLDVPVKLLIDSAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP-~~eG~~la~~L~--~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~ 293 (396)
.|+.+|+++-.-+.+.++..+...+++. ++++++ ...|+.+..-+. ..|++++ ..+..++.++|.+|-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvID---- 73 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVID---- 73 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEEE----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEEE----
Confidence 5888999887777777766666778866 777776 466766654333 3444444 335566677886653
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+-+.-+++..+-.|.++++|+++.+--+
T Consensus 74 ------fT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 74 ------FTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp ------ES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred ------cCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 2366778888888888899999877444
No 66
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=75.36 E-value=40 Score=26.90 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=46.9
Q ss_pred HHHHHHHHCCCeeEEEEeCCCCCc-----------hhHHHHHHHH----hCCCCEEEEc--ch---HHHHhc--ccCCEE
Q 016064 230 EVLKMAAQNKKLFRVLCTEGRPDR-----------SGLRLANELA----KLDVPVKLLI--DS---AVAYTM--DEVDMV 287 (396)
Q Consensus 230 ~~L~~A~~~gk~f~ViV~EsrP~~-----------eG~~la~~L~----~~GI~vtlI~--Ds---av~~~m--~~vd~V 287 (396)
..+.-|...+.++.++.+...+.. ++++....+. ..|++++... .. ++.... .++|+|
T Consensus 18 ~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlv 97 (130)
T cd00293 18 WAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLI 97 (130)
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEE
Confidence 334444455777777744333321 3334433333 3688875532 22 222222 468999
Q ss_pred EEcceeEeecCCeec-cccHHHHHHHhhhCCCcEEEe
Q 016064 288 FVGADGVVESGGIIN-MMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 288 lvGAd~V~~NG~v~n-kiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++|+..- +.... ..|+..- -+.+..++||+++
T Consensus 98 vig~~~~---~~~~~~~~~~~~~-~ll~~~~~pvliv 130 (130)
T cd00293 98 VMGSRGR---SGLRRLLLGSVAE-RVLRHAPCPVLVV 130 (130)
T ss_pred EEcCCCC---CccceeeeccHHH-HHHhCCCCCEEeC
Confidence 9998642 23322 2344333 3446688998864
No 67
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=74.80 E-value=44 Score=35.31 Aligned_cols=111 Identities=9% Similarity=0.120 Sum_probs=62.2
Q ss_pred hhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCC-C-CchhHHHHHHHHhCCCCEEEEcc------hHHHHhc
Q 016064 210 QDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGR-P-DRSGLRLANELAKLDVPVKLLID------SAVAYTM 281 (396)
Q Consensus 210 ~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Esr-P-~~eG~~la~~L~~~GI~vtlI~D------sav~~~m 281 (396)
++++.-.+.+++-+++..+..+| .+...|+ +|++.+.. + .....++...+...|+.+..+.- ..+...+
T Consensus 132 A~l~gae~alvv~sg~aAi~l~l-~~l~~Gd--eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~aI 208 (454)
T TIGR00474 132 CELTGAEDALVVNNNAAAVLLAL-NTLAKGK--EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDAI 208 (454)
T ss_pred HHHhCCCcEEEECCHHHHHHHHH-HHhCCcC--EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHhc
Confidence 34544445666555555555555 4554454 68887653 2 22233555567788999888732 2233344
Q ss_pred -ccCCEEEEcceeEee-cCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 282 -DEVDMVFVGADGVVE-SGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 282 -~~vd~VlvGAd~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
++..+|++-..+.+. +| .....--..++-+||++|+|++|=+
T Consensus 209 ~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 209 TENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 344444444333222 22 1123456678999999999999943
No 68
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=74.75 E-value=46 Score=34.08 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=53.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.|+|-|....+..++....+.|. +|++.. +.+.+ ..+ ...+...|++++.+.- ..+...+ ++..+|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSSR--SLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 567776666666655655544454 566543 33333 233 3456778999888743 3344444 344444431
Q ss_pred ceeE-eecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGV-VESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V-~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.. -..|.+.. + ..++-+|++++++++|
T Consensus 154 --~p~NptG~v~d-l--~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 --TPSNPLTELAD-I--AALAEIAHAAGALLVV 181 (390)
T ss_pred --CCCCCCCCcCC-H--HHHHHHHHHcCCEEEE
Confidence 11 12233321 1 5677789999998876
No 69
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=74.66 E-value=43 Score=34.59 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=56.2
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEcce
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVGAD 292 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvGAd 292 (396)
+.|++-+.+..+..++......|. +|++...-....-..+...+...|++++++... .+...+ ++...|++ +
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~Gd--~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~--e 162 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAGD--RLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF--E 162 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCCC--EEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEE--E
Confidence 577777777777666655544343 677665432221122345577789999988632 344444 34444443 1
Q ss_pred eEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 293 GVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 293 ~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
... ..|.+.. --.++-+||+++++|+|
T Consensus 163 sp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 163 TPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 111 2333332 34577889999998876
No 70
>PRK15482 transcriptional regulator MurR; Provisional
Probab=74.38 E-value=58 Score=31.64 Aligned_cols=39 Identities=10% Similarity=-0.064 Sum_probs=32.3
Q ss_pred chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.+-.++++.+.+.|+++..|+|+..+.+-+.+|.+|.-.
T Consensus 196 ~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 196 KEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 444566888999999999999988888888899988743
No 71
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=74.38 E-value=17 Score=29.77 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHhCCCCEEEE------cchH--HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 258 LANELAKLDVPVKLL------IDSA--VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 258 la~~L~~~GI~vtlI------~Dsa--v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
+-+.+.+.|...... .... +...++++|+||+=.|.|--+ -+..+--.||.+++|++.+
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~-------~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHN-------AMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChH-------HHHHHHHHHHHcCCcEEEE
Confidence 344455556555555 3344 556678889999988766554 4666777889999999875
No 72
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=74.12 E-value=42 Score=35.14 Aligned_cols=98 Identities=11% Similarity=0.129 Sum_probs=54.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEcc---hHHHHhcc-cCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLID---SAVAYTMD-EVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~D---sav~~~m~-~vd~VlvG 290 (396)
..|+|-|.+..+..++....+.|. +|++... .+.| ..+ .+.|.+.|+.++++.. .++...+. +...|++-
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 456666666666555554444454 5666543 2223 233 4456778999888852 34555553 44444432
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+....+.+.. --.++-+|++++++++|
T Consensus 157 --~~~np~g~v~D--i~~I~~la~~~gi~liv 184 (433)
T PRK08134 157 --TLGNPGLEVLD--IPTVAAIAHEAGVPLLV 184 (433)
T ss_pred --CCCcccCcccC--HHHHHHHHHHcCCEEEE
Confidence 22221222222 25588999999999987
No 73
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=74.06 E-value=53 Score=27.73 Aligned_cols=100 Identities=10% Similarity=0.016 Sum_probs=52.9
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchH----------HHHhc--
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSA----------VAYTM-- 281 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa----------v~~~m-- 281 (396)
.....+++.|.|..+..++..+...+ .+|++.+. ...|... ..+...|.++..+.... +-...
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~~~--~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLGPG--DEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCCC--CEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 44567777777777666666654323 45666553 2223221 34456677777664321 11111
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+...+++. ....+++..... -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~--~~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVIT--PNTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEe--cCcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 233333333 222333333333 5788888999998886
No 74
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=73.97 E-value=44 Score=32.57 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=51.4
Q ss_pred ccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhccc-----
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMDE----- 283 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~~----- 283 (396)
++...+.|++.+.+......+..+...| -+|++ ++|...+.. ..+...|.++..+.. ..+-.++.+
T Consensus 58 ~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~ 131 (349)
T cd06454 58 FHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASII--DGIRLSGAKKRIFKHNDMEDLEKLLREARRPY 131 (349)
T ss_pred HhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHH--HHHHHcCCceEEecCCCHHHHHHHHHHhhccC
Confidence 3333345666555554444444333333 34554 334443322 234557888876632 233334432
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-.++++ ...+....|....+ ..++-+|+++++++++
T Consensus 132 ~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~liv 167 (349)
T cd06454 132 GKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFV 167 (349)
T ss_pred CCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEE
Confidence 223333 33343333444444 4578889999998887
No 75
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=73.86 E-value=58 Score=32.34 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhccccC-ceE-EeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc
Q 016064 196 EISYKARKIIAMLSQDFIFDG-CTI-LVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg-~~I-LT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~ 273 (396)
+.....++.+++..- ..++ +.| +|-+.|..+..++......|. +|+|.+ +..-|..+...+...|+++..++
T Consensus 37 ~~~~~~~~~l~~l~~--~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~ 110 (368)
T PRK13479 37 ALTASVRAKLVAIAT--GEEGYTCVPLQGSGTFSVEAAIGSLVPRDG--KVLVPD--NGAYGARIAQIAEYLGIAHVVLD 110 (368)
T ss_pred HHHHHHHHHHHHHhC--CCCCceEEEEcCCcHHHHHHHHHhccCCCC--eEEEEe--CCchHHHHHHHHHHcCCcEEEEE
Confidence 333445555554321 2222 444 444555556666655543333 555554 34445555566677899988876
Q ss_pred ch--------HHHHhccc---CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 274 DS--------AVAYTMDE---VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 274 Ds--------av~~~m~~---vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.. .+...+.. ...|.+ +..=...|.+ +. ...++-+|++++++++|=
T Consensus 111 ~~~~~~~d~~~l~~~l~~~~~~~~v~~-~~~~~~tG~~-~~--~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 111 TGEDEPPDAAEVEAALAADPRITHVAL-VHCETTTGIL-NP--LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEE-EcccCccccc-cC--HHHHHHHHHHcCCEEEEE
Confidence 42 22222321 222221 1111123433 33 357888899999877763
No 76
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=73.58 E-value=43 Score=28.06 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc------hHHHHhc---ccCCEEEEcceeEeecC
Q 016064 228 VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID------SAVAYTM---DEVDMVFVGADGVVESG 298 (396)
Q Consensus 228 V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D------sav~~~m---~~vd~VlvGAd~V~~NG 298 (396)
...+.+... ...|+++.+++ .++.|.+.||+|+.+.. ..+...+ +++|+||-=. +|
T Consensus 14 ~~~~a~~l~--~~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~ 78 (112)
T cd00532 14 LVDLAPKLS--SDGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DP 78 (112)
T ss_pred HHHHHHHHH--HCCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CC
Confidence 334444444 34589998754 57778889999988632 2233333 3788887643 22
Q ss_pred Ce--eccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 299 GI--INMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 299 ~v--~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
.- -.....+.+--+|-.++||++--..+.+
T Consensus 79 ~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~ 110 (112)
T cd00532 79 RRDRCTDEDGTALLRLARLYKIPVTTPNATAM 110 (112)
T ss_pred CcccccCCChHHHHHHHHHcCCCEEECHHHHh
Confidence 22 1255678899999999999987655443
No 77
>PLN02409 serine--glyoxylate aminotransaminase
Probab=73.47 E-value=67 Score=32.80 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=51.5
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch--------HHHHhcc-----cC
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS--------AVAYTMD-----EV 284 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds--------av~~~m~-----~v 284 (396)
+++|-+.+..+...+....+.| -+|++.+ |..-|..++..+...|+++..+... .+...+. +.
T Consensus 63 vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 138 (401)
T PLN02409 63 FIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKI 138 (401)
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCc
Confidence 4444444444444444433334 3677776 4445666666667779888877521 2333343 34
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHH--hhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALV--AHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~--Ak~~~vPvyV 322 (396)
..|++ .+.-...|.+.. -..++-+ |++++++++|
T Consensus 139 k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 139 KAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred cEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 44444 333334444432 2334555 8888887776
No 78
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=72.93 E-value=36 Score=33.57 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhcccCCEEEEccee
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m~~vd~VlvGAd~ 293 (396)
...+++|.|-+..+.. +..+...| +|++. .|.+.+.. ..+...|+++..++| ..+...+++.+.|++ ..-
T Consensus 64 ~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~--~~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~p 134 (330)
T TIGR01140 64 AASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYA--RAWRAAGHEVVELPDLDRLPAALEELDVLVL-CNP 134 (330)
T ss_pred hhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHH--HHHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eCC
Confidence 3567777665555444 45555433 45554 57776544 345678999999885 334444566666655 222
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
--.-|.+...-.=..++-.|+.+++++++
T Consensus 135 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 135 NNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 23456666655556677888889987775
No 79
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=72.63 E-value=18 Score=33.62 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=58.1
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhcccCCEEEEcceeEe
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~~vd~VlvGAd~V~ 295 (396)
|+.+|-++.+-+-+.++..+ +.++|.++=..+ -...+..|...|+.+....- .++...++.+|.|++-.....
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 67777766554433333322 345666443322 34568889999987654332 566667788888775432211
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
--..-....++-+|++.||+.||..+
T Consensus 77 ----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 77 ----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp ----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred ----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 11223446678888999999998654
No 80
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=72.22 E-value=42 Score=33.90 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=56.0
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcch---HHHHhcc-cCCEEEE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLIDS---AVAYTMD-EVDMVFV 289 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~Ds---av~~~m~-~vd~Vlv 289 (396)
.+.+++-|.+..+..++....+.|. +|++.. |.+.|. .+ ...+...|+++.++.-. .+...+. +..+|++
T Consensus 56 ~~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~ 131 (369)
T cd00614 56 EAALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV 131 (369)
T ss_pred CCEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE
Confidence 3567776666666666665544454 455543 444443 22 33456789998887542 3444443 4445554
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.+..-.+.+..+ -.++-+||+++++++|
T Consensus 132 --e~~~np~g~~~dl--~~i~~la~~~g~~liv 160 (369)
T cd00614 132 --ESPTNPTLKVVDI--EAIAELAHEHGALLVV 160 (369)
T ss_pred --ECCCCCCCeecCH--HHHHHHHHHcCCEEEE
Confidence 3333322333332 3678889999999887
No 81
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=72.20 E-value=89 Score=31.43 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=49.9
Q ss_pred CceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhc-ccC
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTM-DEV 284 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m-~~v 284 (396)
.++++|.|.+..+..++..... .++.-+|++.+.........+.......|+++..++. ..+...+ ++.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~ 160 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT 160 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC
Confidence 3567775554444444433211 1233467766542211111122233457888877752 1222222 334
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.+|++. ..-...|.+.. -..++-+|++++++++|=
T Consensus 161 ~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 161 KLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred eEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 444443 22223344433 356778899999998873
No 82
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=72.10 E-value=92 Score=31.43 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhHHH--HHHHHhCCCCEEE
Q 016064 196 EISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGLRL--ANELAKLDVPVKL 271 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~~l--a~~L~~~GI~vtl 271 (396)
+.....++.|++.--- -...++++|-|-+..+..++..... -++.-+|++.+ |.+.+... .......|++++.
T Consensus 63 ~~~~~~r~~la~~~g~-~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~ 139 (401)
T PRK10874 63 ARYEAAREQVAQLLNA-PDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVK 139 (401)
T ss_pred HHHHHHHHHHHHHcCC-CCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEE
Confidence 3344566666654211 0233466665555544444443321 12223677665 33333222 2334567998888
Q ss_pred Ecc--------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 272 LID--------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 272 I~D--------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++- ..+...+ ++...|++ ...-...|.+. -...++-+|+++|++++|
T Consensus 140 v~~~~~~~~d~~~l~~~i~~~t~lv~i-~~~~n~tG~~~---~~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 140 LPLGADRLPDVDLLPELITPRTRILAL-GQMSNVTGGCP---DLARAITLAHQAGMVVMV 195 (401)
T ss_pred EecCCCCcCCHHHHHHhcCcCcEEEEE-eCCcccccCcC---CHHHHHHHHHHcCCEEEE
Confidence 752 1222333 33344433 32223344443 124578889999998876
No 83
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.00 E-value=48 Score=34.79 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=53.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-H-HHHHHhCCCCEEEEcc----hHHHHhcccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-L-ANELAKLDVPVKLLID----SAVAYTMDEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-l-a~~L~~~GI~vtlI~D----sav~~~m~~vd~VlvG 290 (396)
..+++-+.+..+...|....+.|. +|++..+ .+.|.. + ...|.+.|++++++.| .++-..+..-+++|+
T Consensus 86 ~av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~- 160 (436)
T PRK07812 86 AALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF- 160 (436)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-
Confidence 356666666666666655554454 5666654 333432 2 3446778999888853 223333332233333
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+.+...-+.+..+ -.++-+||++|++++|
T Consensus 161 ie~~sNp~G~v~Dl--~~I~~la~~~gi~liV 190 (436)
T PRK07812 161 AETISNPQIDVLDI--PGVAEVAHEAGVPLIV 190 (436)
T ss_pred EECCCCCCCeecCH--HHHHHHHHHcCCEEEE
Confidence 23332221222222 3588899999998887
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=71.97 E-value=6 Score=36.06 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=45.5
Q ss_pred hccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCC
Q 016064 211 DFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDV 267 (396)
Q Consensus 211 ~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI 267 (396)
+.|++-+.|+.|+.+++.+..|+ .||.+-|++=|+-=.+.-.++|+.|++.|.
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~----l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLR----LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHH----cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 35677889999999999888774 488999999999888888899999999985
No 85
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=71.22 E-value=6 Score=32.26 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=48.7
Q ss_pred HHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE----Ecch---H----HHHhc--ccCCEEEEcceeEe
Q 016064 229 MEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL----LIDS---A----VAYTM--DEVDMVFVGADGVV 295 (396)
Q Consensus 229 ~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl----I~Ds---a----v~~~m--~~vd~VlvGAd~V~ 295 (396)
+.+.+...+.| |+++.+++ .|+.|.+.||+|.- +... . +..+| +++|+||.=.+.
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~-- 70 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP-- 70 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T--
T ss_pred HHHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC--
Confidence 34455555556 89998865 67889999999443 3333 1 44555 678988764322
Q ss_pred ecCCeecc-ccHHHHHHHhhhCCCcEE
Q 016064 296 ESGGIINM-MGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 296 ~NG~v~nk-iGT~~lAl~Ak~~~vPvy 321 (396)
.--.. ...+.+--+|-.++||.+
T Consensus 71 ---~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 71 ---FSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---CcccccCCcHHHHHHHHHcCCCCc
Confidence 22222 367889999999999974
No 86
>PRK05968 hypothetical protein; Provisional
Probab=70.84 E-value=70 Score=32.73 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=53.8
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEcc---hHHHHhcccCCEEEEcc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLID---SAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~D---sav~~~m~~vd~VlvGA 291 (396)
..|++-+.+..+...+....+.|. +|++.+ |.+.| ..+ ...+...|+++.++.- ..+...+++...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 456665555444444543334454 566554 34333 333 4557778999988742 2344445666666652
Q ss_pred eeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. ..|-+....=-..++-+||+++++|+|
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~viv 182 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMI 182 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 1 223232222233567788999998877
No 87
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=70.71 E-value=1.1e+02 Score=30.96 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhHH-HHHHHHhCCCCEEEEcc
Q 016064 198 SYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGLR-LANELAKLDVPVKLLID 274 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~~-la~~L~~~GI~vtlI~D 274 (396)
...+++.|+++.- ...+.+++|-|.|..+..++..... .++.-+|++.+ +.+.... ....+...|+++..++.
T Consensus 49 ~~~~r~~la~~~g--~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~ 124 (402)
T TIGR02006 49 VENARNQVAELIG--ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPP 124 (402)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEcc
Confidence 3445555665421 2344577776666555555443321 12333566654 3333322 34456677999888753
Q ss_pred h--------HHHHhcc-cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 275 S--------AVAYTMD-EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 275 s--------av~~~m~-~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. .+...+. +...|++ . .+....|.+..+ ..++-+|++++++|+|
T Consensus 125 ~~~~~~d~~~l~~~l~~~~~lv~v-~-~~~n~tG~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 125 KSNGLIDLEELKAAIRDDTILVSI-M-HVNNEIGVIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCCCcCCHHHHHHhcCCCCEEEEE-E-CCCcCceecccH--HHHHHHHHHcCCEEEE
Confidence 2 2333333 3333332 2 222223344443 3688889999998887
No 88
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=70.58 E-value=1.2e+02 Score=30.67 Aligned_cols=120 Identities=13% Similarity=0.024 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhHH--HHHHHHhCCCCEEE
Q 016064 196 EISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGLR--LANELAKLDVPVKL 271 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~~--la~~L~~~GI~vtl 271 (396)
+....+++.|+++.-.. ...++++|-|.|..+..++..... -++.-+|++.+ |.+.+.. +...+...|+++..
T Consensus 60 ~~~~~~r~~la~~~g~~-~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~ 136 (398)
T TIGR03392 60 ARYELARQQVARFLNAP-DAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVK 136 (398)
T ss_pred HHHHHHHHHHHHHhCCC-CCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEE
Confidence 33445666666542110 124567776666655555543321 12223666654 3333322 22334567988887
Q ss_pred Ecc--------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 272 LID--------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 272 I~D--------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++. ..+...+ ++...|++ ...=...|.+.. -..++-+|++++++++|
T Consensus 137 v~~~~~~~~~~~~l~~~i~~~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 137 LPIGADLLPDIRQLPELLTPRTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred EecCCCCCcCHHHHHHHhccCceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 752 2233333 34444443 222223444432 24577789999998876
No 89
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=70.53 E-value=1e+02 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=33.5
Q ss_pred EEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 245 LCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 245 iV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
++.-++-..+-.++++..++.|+++..|++ .-+.+.+.+|.+|.-
T Consensus 181 ~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 181 LISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 344455455566779999999999999997 445666788998863
No 90
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=70.43 E-value=53 Score=33.66 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHHHHHHhCCCCEEEEc-c-hHHHHhcc--cCCEEEEc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLANELAKLDVPVKLLI-D-SAVAYTMD--EVDMVFVG 290 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI~-D-sav~~~m~--~vd~VlvG 290 (396)
.+.|+|-|.+..+..+|....+.|. +|++. .|.+.+ ..+.+.+...|+++..+. | ..+...+. +...|++
T Consensus 69 ~~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i- 143 (385)
T PRK08574 69 VDALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI- 143 (385)
T ss_pred CcEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE-
Confidence 3567776666666666655554454 55544 344444 344555677899887652 2 34555553 4445543
Q ss_pred ceeEee-cCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVE-SGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.... .|.++. + -.++-+||+++++++|
T Consensus 144 -e~p~NPtG~v~d-l--~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 -ETMTNPTLKVID-V--PEVAKAAKELGAILVV 172 (385)
T ss_pred -ECCCCCCCEecC-H--HHHHHHHHHcCCEEEE
Confidence 33332 344444 2 3677889999998876
No 91
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=70.20 E-value=16 Score=32.39 Aligned_cols=67 Identities=27% Similarity=0.216 Sum_probs=44.9
Q ss_pred eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcE
Q 016064 241 LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPV 320 (396)
Q Consensus 241 ~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPv 320 (396)
..++--.+..|+..|...|.-|++.|++|.++. +|.|+++ |.....--...++-.|+++++|+
T Consensus 25 ~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~~v 87 (196)
T cd00287 25 LVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGVPV 87 (196)
T ss_pred eEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCCeE
Confidence 333334456788889999999999999999988 4444444 43322123344556688889998
Q ss_pred EEec
Q 016064 321 YVAA 324 (396)
Q Consensus 321 yV~a 324 (396)
++=.
T Consensus 88 ~~D~ 91 (196)
T cd00287 88 VLDP 91 (196)
T ss_pred EEeC
Confidence 7644
No 92
>PLN02778 3,5-epimerase/4-reductase
Probab=69.84 E-value=23 Score=34.74 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=50.7
Q ss_pred CeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc----c-hHHHHhcc--cCCEEEEcceeEee-cC----------Cee
Q 016064 240 KLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI----D-SAVAYTMD--EVDMVFVGADGVVE-SG----------GII 301 (396)
Q Consensus 240 k~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~----D-sav~~~m~--~vd~VlvGAd~V~~-NG----------~v~ 301 (396)
+..+|+|+-+. ++=|..+++.|.+.|.+|++.. | ..+...+. ++|.||=-|--... +- --.
T Consensus 8 ~~~kiLVtG~t-GfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~ 86 (298)
T PLN02778 8 ATLKFLIYGKT-GWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 86 (298)
T ss_pred CCCeEEEECCC-CHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHH
Confidence 33455655443 4557777777777777665421 2 12333333 57777755422111 10 016
Q ss_pred ccccHHHHHHHhhhCCCcEEEeccc
Q 016064 302 NMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 302 nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
|-.||..++-+|+++++++++...+
T Consensus 87 Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 87 NVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecc
Confidence 7889999999999999988776533
No 93
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=69.80 E-value=52 Score=29.53 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=31.1
Q ss_pred hHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 255 GLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 255 G~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
=.++++.+.+.|+++..|++..-+.+-+.+|.+|.-.
T Consensus 88 ~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 88 LVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 3566888999999999999988888888999988643
No 94
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=69.56 E-value=19 Score=31.23 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=52.7
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.|.+||.+|.+++...++..+.+.|-+ +|+|+ +|-......+++.+ .|..+..++-......+.++|.||-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~-nRt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIV-NRTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEE-ESSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEE-ECCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999999999999888877643 34444 45555566777777 455667777666777889999887653
No 95
>PRK04311 selenocysteine synthase; Provisional
Probab=69.51 E-value=95 Score=32.96 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=60.4
Q ss_pred hhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCC-CC-chhHHHHHHHHhCCCCEEEEcc------hHHHHhc
Q 016064 210 QDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGR-PD-RSGLRLANELAKLDVPVKLLID------SAVAYTM 281 (396)
Q Consensus 210 ~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Esr-P~-~eG~~la~~L~~~GI~vtlI~D------sav~~~m 281 (396)
++++.-.+.+++-+++..+..+| .+...|. +|+|.... +. ....++-..+...|+.+..+.- ..+...+
T Consensus 137 A~l~Gae~a~vv~sgtaAl~l~l-~~l~~Gd--eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~aI 213 (464)
T PRK04311 137 CALTGAEDALVVNNNAAAVLLAL-NALAAGK--EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQAI 213 (464)
T ss_pred HHHhCCCeEEEECCHHHHHHHHH-HHhCCCC--EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHhc
Confidence 34444345677766666665555 4444444 68877542 21 2223444556778988776642 1233344
Q ss_pred -ccCCEEEEcceeEee-cCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 282 -DEVDMVFVGADGVVE-SGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 282 -~~vd~VlvGAd~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
++..+|++-..+-+. .| .....--..++-+||.+++|++|=+
T Consensus 214 ~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 214 NENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred CccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 344344433222111 12 1222345668899999999999944
No 96
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=69.32 E-value=1.1e+02 Score=31.03 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHH--HCCCeeEEEEeCCCCCchhHH--HHHHHHhCCCCEEE
Q 016064 196 EISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAA--QNKKLFRVLCTEGRPDRSGLR--LANELAKLDVPVKL 271 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~--~~gk~f~ViV~EsrP~~eG~~--la~~L~~~GI~vtl 271 (396)
+....+++.|+++-.. ....++++|.|-+..+..++.... .-++.-+|++.+.. ..+-. +.......|+++..
T Consensus 67 ~~~~~~r~~la~~~~~-~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~ 143 (406)
T PRK09295 67 EKMENVRKQAALFINA-RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEME--HHANIVPWQMLCARVGAELRV 143 (406)
T ss_pred HHHHHHHHHHHHHcCc-CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcch--hhHHHHHHHHHHHHcCcEEEE
Confidence 3344566666654211 123467777665555444443210 11222367766532 11111 12223457998888
Q ss_pred Ecc--------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 272 LID--------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 272 I~D--------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++. ..+...+ ++...|++. ..=...|.+.. ...++-+||+++++|+|
T Consensus 144 v~~~~~~~~d~~~l~~~i~~~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 144 IPLNPDGTLQLETLPALFDERTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred EecCCCCCCCHHHHHHhcCCCcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 752 2333334 344445443 22234454433 24577888999987766
No 97
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=69.28 E-value=21 Score=39.04 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=60.9
Q ss_pred CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE----cc-hHHHHhcc--cCCEEEEcceeEe-ecCC----------e
Q 016064 239 KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL----ID-SAVAYTMD--EVDMVFVGADGVV-ESGG----------I 300 (396)
Q Consensus 239 gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI----~D-sav~~~m~--~vd~VlvGAd~V~-~NG~----------v 300 (396)
+...+|+|+-+ -++=|..+++.|.+.|++|++. +| .++...+. +.|.||=-|--.. .+.+ -
T Consensus 378 ~~~mkiLVtGa-~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~ 456 (668)
T PLN02260 378 KPSLKFLIYGR-TGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIR 456 (668)
T ss_pred CCCceEEEECC-CchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHH
Confidence 34567777754 4667999999999999888542 23 23444554 6788876653221 0111 3
Q ss_pred eccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 301 INMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 301 ~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
+|..||..++-+|++++++++++...+=|
T Consensus 457 ~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 457 ANVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HHhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 78899999999999999998877544444
No 98
>PRK09932 glycerate kinase II; Provisional
Probab=69.24 E-value=10 Score=39.29 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 254 SGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 254 eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
.|.++.-++.. +-..|+.+|+||.|=-++-.- ...--..+.+|-.|++++|||+++|.+.+..
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~Q--t~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRIDSQ--TAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCccccc--ccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 57777666543 445689999999996554332 2223346678889999999999999986543
No 99
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=69.23 E-value=1.2e+02 Score=29.80 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=51.1
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhc-c-cCCEE
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTM-D-EVDMV 287 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m-~-~vd~V 287 (396)
+++|-|.+..+..++......| -+|++.+. ..-+..+...+...|.+++.++. ..+...+ + +..+|
T Consensus 53 ~~~~~~~t~al~~~~~~~~~~g--~~vl~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v 128 (356)
T cd06451 53 FLLSGSGTGAMEAALSNLLEPG--DKVLVGVN--GVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAV 128 (356)
T ss_pred EEEecCcHHHHHHHHHHhCCCC--CEEEEecC--CchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEE
Confidence 3344443544444444333333 36666642 22233344556667888877741 2333344 3 55556
Q ss_pred EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 288 FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++- ..-...|.+.. --.++-+|+++++++++
T Consensus 129 ~i~-~~~~~~G~~~~---~~~i~~~a~~~~~~li~ 159 (356)
T cd06451 129 TLT-HNETSTGVLNP---LEGIGALAKKHDALLIV 159 (356)
T ss_pred EEe-ccCCCcccccC---HHHHHHHHHhcCCEEEE
Confidence 552 33344554433 33477788999998887
No 100
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=68.91 E-value=80 Score=31.15 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=53.3
Q ss_pred CceEEeecChHHHHHHHHHHHHC--CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhcccCC
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQN--KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTMDEVD 285 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~--gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m~~vd 285 (396)
...++|-|.+......+..+... ++.-+|++.+. ...+ +.+.+...|+++..++. ..+-..+..-+
T Consensus 77 ~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~--~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 152 (371)
T PRK13520 77 AYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPES--AHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT 152 (371)
T ss_pred CCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCc--chHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence 34677766666666565555432 23346777653 2211 23334456888887752 22333333223
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.++....-...|.+ .. --.++-+|+++++.++|
T Consensus 153 ~~vi~~~~~~~tG~~-~~--l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 153 IGIVGIAGTTELGQV-DP--IPELSKIALENGIFLHV 186 (371)
T ss_pred EEEEEEcCCcCCccc-CC--HHHHHHHHHHcCCCEEE
Confidence 333333332344444 33 44578889999999987
No 101
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.81 E-value=40 Score=35.19 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=60.0
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFV 289 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~Vlv 289 (396)
...|+|-|.+..+...|....+.|. +|++.+ |.+.|. .+ ...+...|+++..+.. ..+...+ +++.+|++
T Consensus 80 ~~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l 155 (431)
T PRK08248 80 IGALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFA 155 (431)
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEE
Confidence 4678888888877777766655454 566654 444442 23 4557788999988863 2344444 35555555
Q ss_pred cceeEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 290 GADGVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 290 GAd~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
- ... ..|.+.. + ..++-+|++++++++|
T Consensus 156 ~--sp~NPtG~v~d-i--~~I~~la~~~gi~vIv 184 (431)
T PRK08248 156 E--TIGNPKGDVLD-I--EAVAAIAHEHGIPLIV 184 (431)
T ss_pred E--CCCCCCCcccC-H--HHHHHHHHHcCCEEEE
Confidence 2 221 2244443 2 4677889999988876
No 102
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=68.63 E-value=57 Score=29.35 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
..+++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVV 125 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 4668889999999999999877777778898775
No 103
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=68.39 E-value=9.6 Score=39.15 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 277 VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 277 v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
+-..++.+|.||.|==++-. =++..|+ ..-+|-+||.|+|||+++|.+.+-.
T Consensus 278 le~~v~daDLVITGEGr~D~-Qs~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 278 LEDAVKDADLVITGEGRIDS-QSLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred HHHhhccCCEEEeCCCcccc-cccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 45668999999999655443 2343333 3457888999999999999986543
No 104
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=68.16 E-value=70 Score=32.59 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=51.3
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHHH-HHHhCCCCEEEEcc---hHHHHhcc-cCCEEEE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLAN-ELAKLDVPVKLLID---SAVAYTMD-EVDMVFV 289 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la~-~L~~~GI~vtlI~D---sav~~~m~-~vd~Vlv 289 (396)
...|++-+.+..+..++ ...+.|. +|++.+ |.+.|. .+.+ .+...|++++.+.. ..+-..+. +..+|++
T Consensus 63 ~~~l~~~sG~~al~~~l-~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~l 137 (378)
T TIGR01329 63 DRAFAFSSGMAALDVIT-RLLNNGD--EIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLL 137 (378)
T ss_pred CcEEEECCHHHHHHHHH-HHhCCCC--EEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEE
Confidence 34566655555444444 3444443 566653 444443 3333 35667999988863 23333443 3333332
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
- ..--..|.+.. -..++-+||+++++++|=
T Consensus 138 e-~psnptg~v~d---l~~I~~la~~~g~~vivD 167 (378)
T TIGR01329 138 E-SPTNPLQKIVD---IRKISEMAHAQNALVVVD 167 (378)
T ss_pred E-CCCCCCCeeec---HHHHHHHHHHcCCEEEEE
Confidence 2 11112333332 345778889999888873
No 105
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=68.10 E-value=18 Score=39.42 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=61.5
Q ss_pred ccCceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC-----C----CCEEEE-c---c-hHHH
Q 016064 214 FDGCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL-----D----VPVKLL-I---D-SAVA 278 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~-----G----I~vtlI-~---D-sav~ 278 (396)
.+|.+||+.|.++-+-. +.+++.++| ++|+++. |.......++..+.+. | -.+.++ . | ..+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 57889999998776544 444555555 4666553 3222233444444331 2 122222 1 2 3445
Q ss_pred HhcccCCEEEEcceeEeec-----C-CeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 279 YTMDEVDMVFVGADGVVES-----G-GIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 279 ~~m~~vd~VlvGAd~V~~N-----G-~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
..++++|.||..+-....+ | --+|..|+..+.-+|+..++.-+|...+.
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 5678888887654221100 0 11356789999888888887666655443
No 106
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.85 E-value=17 Score=30.30 Aligned_cols=81 Identities=10% Similarity=0.206 Sum_probs=51.5
Q ss_pred eEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---HHHHhc------ccCC-E
Q 016064 218 TILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---AVAYTM------DEVD-M 286 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---av~~~m------~~vd-~ 286 (396)
+|-||.....+.++|....++ ...++|+|++..+..+-....+++.+.+.+++++.-. ..+..+ -+.+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456666667788888877665 6789999888877666677788887777777777632 322222 2233 4
Q ss_pred EEEcceeEeecC
Q 016064 287 VFVGADGVVESG 298 (396)
Q Consensus 287 VlvGAd~V~~NG 298 (396)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 555777777765
No 107
>PLN02206 UDP-glucuronate decarboxylase
Probab=67.51 E-value=23 Score=37.17 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=60.1
Q ss_pred cCceEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEccee
Q 016064 215 DGCTILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~ 293 (396)
.+.+||..|-++-|-.-|... .++| .+|++++.........+...+.. ..+.++.-.-.-..+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~~--~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFSN--PNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhccC--CceEEEECCccChhhcCCCEEEEeeee
Confidence 468899999988776655443 3334 56776654322111122112222 234444211122234568877766532
Q ss_pred EeecCC--------eeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 294 VVESGG--------IINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 294 V~~NG~--------v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
...... -.|-.||..+.-+|+..+++|+.+....
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1677899999999999999877665543
No 108
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=67.26 E-value=43 Score=33.41 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=70.1
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEee
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~ 296 (396)
|..+..-....|...|+++.+.|.+.-|+++++-+..+.++|....++.|+ .++=-+++|.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 666666778888999999999898888888988776556778777778776 445455555544433322222222233
Q ss_pred cC--CeeccccHHHHHHH--hhhCCCcE
Q 016064 297 SG--GIINMMGTYQIALV--AHSMNKPV 320 (396)
Q Consensus 297 NG--~v~nkiGT~~lAl~--Ak~~~vPv 320 (396)
-| ++++..|+...+++ ++..++-|
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~ 172 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQ 172 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCe
Confidence 45 67899999888876 66777766
No 109
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=67.10 E-value=95 Score=31.12 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-ccCceEEeec-ChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE
Q 016064 193 KFGEISYKARKIIAMLSQDFI-FDGCTILVHG-FSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVK 270 (396)
Q Consensus 193 ~f~e~~~~a~~~Ia~~a~~~I-~dg~~ILT~~-~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt 270 (396)
+|.+....+++.+++..- . .+..+|+|-| -+..++.++......+++.-+++ ++|+ |++++....+.|++++
T Consensus 41 ~~~~~~~~~r~~l~~l~~--~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~--~g~~--~~~~~~~a~~~g~~~~ 114 (355)
T cd00611 41 DFEAIVNEAESDLRELLN--IPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVV--TGAW--SAKAAKEAKRYGGVVV 114 (355)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEE--CCHH--HHHHHHHHHhcCCCcE
Confidence 444555566666666432 1 2345888877 55556666655443344433333 3444 4566666677799988
Q ss_pred EEc-chH------HH---Hhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 271 LLI-DSA------VA---YTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 271 lI~-Dsa------v~---~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++. |.. .. ..+ ++.+. +.-++.-...|..+. -+++.++++++|
T Consensus 115 ~~~~~~~g~~~~~~~~~~~~~~~~~~l-V~~~h~~t~tG~~~~--------~i~~~~g~~~~V 168 (355)
T cd00611 115 IVAAKEEGKYTKIPDVETWDLAPDAAY-VHYCSNETIHGVEFD--------EVPDTGGVPLVA 168 (355)
T ss_pred EEecccccCCCCCCCHhhcCCCCCCCE-EEEeCCcccccEEcc--------eecccCCCeEEE
Confidence 876 211 11 112 34444 445555555565533 334558888877
No 110
>PRK05839 hypothetical protein; Provisional
Probab=67.07 E-value=67 Score=32.32 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=55.6
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchH-HHHh-------cccC
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSA-VAYT-------MDEV 284 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa-v~~~-------m~~v 284 (396)
+....+++|.|.+..+..++......+.. ..++++ .|.+.+...+ +...|+++..++... -++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45566788887776655444433211112 234444 3776655543 356788887776531 1111 2344
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+|++- .-=-+.|.++++-=-..++-.|+++++.+++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 444441 1111225555544445677778999998875
No 111
>PRK05443 polyphosphate kinase; Provisional
Probab=66.22 E-value=17 Score=40.58 Aligned_cols=56 Identities=23% Similarity=0.187 Sum_probs=40.9
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCch--hHHHHHHHHhCCCCEEEEc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRS--GLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~e--G~~la~~L~~~GI~vtlI~ 273 (396)
++--.+..+.+...|..|+++|+.++|+|--..+..+ ....+++|.++|+.|.|-.
T Consensus 372 tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~ 429 (691)
T PRK05443 372 TLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGV 429 (691)
T ss_pred EEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEcc
Confidence 3333455667778888999999999988655544443 4566999999999997743
No 112
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=66.01 E-value=5.5 Score=33.57 Aligned_cols=85 Identities=24% Similarity=0.404 Sum_probs=49.1
Q ss_pred eEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhc--ccCCEEEEccee
Q 016064 218 TILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTM--DEVDMVFVGADG 293 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m--~~vd~VlvGAd~ 293 (396)
+||.+|+.+- +-.|..+..+ .+.-+|||.-+.|..... .+ .+++ -+.| .++..+. .++|+|++|-+.
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~------~~-~~~~-~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL------GK-NVPI-DITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT------SE-EE-S--TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh------ce-ecCC-CCCCHHHHHHHHHHcCCCEEEECChH
Confidence 6888887653 3344444443 455789999877654211 00 0111 1122 2333333 689999999999
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
-+.+| ++=.-+..|+|++
T Consensus 73 pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 73 PLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHTT----------HHHHHHHTT-CEE
T ss_pred HHHHH----------HHHHHHHCCCcEE
Confidence 99998 6666677788874
No 113
>PRK13936 phosphoheptose isomerase; Provisional
Probab=65.96 E-value=1.1e+02 Score=28.24 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCCEEEEcc---hHHHHhcccCCEEEEc
Q 016064 256 LRLANELAKLDVPVKLLID---SAVAYTMDEVDMVFVG 290 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~D---sav~~~m~~vd~VlvG 290 (396)
.++++.+.+.|+++..|++ +.++-+...+|.+|.-
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v 165 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV 165 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEe
Confidence 3558888889999998887 5555544457766643
No 114
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=65.70 E-value=65 Score=32.90 Aligned_cols=103 Identities=11% Similarity=0.174 Sum_probs=54.9
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m- 281 (396)
+....+++|.|.+..+..++......|. +|++. .|.+.+.. ..+...|+++..++. ..+...+
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEGD--NILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCCC--EEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 4556788888888877666654433343 44443 36555543 335667888777653 1222222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++.+|++. .-=-+.|.++.+-=-..++-+|+++++.+++
T Consensus 176 ~~~~~i~~~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIMT-NPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 244444432 1111223333333345567778889887765
No 115
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=65.64 E-value=24 Score=31.42 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=60.5
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcce
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd 292 (396)
+..|++|..+|+=.- ++.+.. .+..+|+|.|=.|...|.. ..+ +++.....+++++|.|++-.-
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l~--~~~~~v~v~d~~~~~~~~~------~~~-----~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKLK--ERGAEVRVFDLNPDNIGEE------PGD-----VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHHC--CCCSEEEEEESSGGG--SS------CT------EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHHh--cCCCCEEEEECCCCCCCCC------CCc-----CCHHHHHHHHccCCEEEEEee
Confidence 577899999997422 232322 3567888889888653321 011 178888999999999988554
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
+ ++| ||..--+.....+.++++..+|.-+.+.
T Consensus 72 T------lvN--~Ti~~iL~~~~~~~~vil~GpS~~~~P~ 103 (147)
T PF04016_consen 72 T------LVN--GTIDDILELARNAREVILYGPSAPLHPE 103 (147)
T ss_dssp H------CCT--TTHHHHHHHTTTSSEEEEESCCGGS-GG
T ss_pred e------eec--CCHHHHHHhCccCCeEEEEecCchhhHH
Confidence 4 444 4555444433468999999999888775
No 116
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=65.59 E-value=31 Score=34.32 Aligned_cols=104 Identities=21% Similarity=0.203 Sum_probs=65.3
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhccc--CCEEEEcceeEee
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVE 296 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~--vd~VlvGAd~V~~ 296 (396)
||..|.++-+-.-|.++.. ..+.|+.+..+.. -+.-..++..++++ -|.||=-|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-----------------Ditd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAEL-----------------DITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccc-----------------cccChHHHHHHHHhhCCCEEEECcccccc
Confidence 7888888877777777654 5678887765541 11111223333332 2444443332222
Q ss_pred cC--------CeeccccHHHHHHHhhhCCCcEEEecccccccccc--cCCCCCCC
Q 016064 297 SG--------GIINMMGTYQIALVAHSMNKPVYVAAESYKFARLY--PLDQKDMG 341 (396)
Q Consensus 297 NG--------~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~--p~~~~d~~ 341 (396)
|+ -.+|-.|+..+|.+|++.|.+++=+.--|=|+..- |..+.|..
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~ 118 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTP 118 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCC
Confidence 22 24889999999999999999999999888888653 34444443
No 117
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=65.52 E-value=97 Score=31.50 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=53.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvG 290 (396)
+.+++-|.+..+..+|....+.|. +|++. ++.+.+ ..+ ...+...|++++.+... .+...+ ++...|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 566666666666666655444454 46653 343333 233 34567789999888642 333333 344444442
Q ss_pred ceeEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
... ..|.+.. --.++-+||+++++++|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233321 25677778999998876
No 118
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=65.23 E-value=45 Score=34.70 Aligned_cols=114 Identities=20% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHH---HHHC-CCeeEEEEeCCCCCchh-HHHHHHHHhCCCCEEEE
Q 016064 198 SYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKM---AAQN-KKLFRVLCTEGRPDRSG-LRLANELAKLDVPVKLL 272 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~---A~~~-gk~f~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI 272 (396)
++.|+++|++.- -..+.++|.|-|.+....-.|+- |.++ ++.-++|++... ... ...++.|...|.+|||+
T Consensus 46 ve~AR~~iA~ll--ga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl 121 (386)
T COG1104 46 VEEAREQIAKLL--GADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYL 121 (386)
T ss_pred HHHHHHHHHHHh--CCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEe
Confidence 445777777642 12457899999998877666664 3322 234466644321 111 23477887789999999
Q ss_pred cchH--------HHHhcccCCEEEEcceeEeecCCeeccccHHH----HHHHhhhCCCcEEE
Q 016064 273 IDSA--------VAYTMDEVDMVFVGADGVVESGGIINMMGTYQ----IALVAHSMNKPVYV 322 (396)
Q Consensus 273 ~Dsa--------v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~----lAl~Ak~~~vPvyV 322 (396)
+-.. +...++ =|-++|.- ..+=|-+||.| ++-+||+++++|.|
T Consensus 122 ~V~~~G~v~~e~L~~al~-~~T~LVSi------m~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 122 PVDSNGLVDLEQLEEALR-PDTILVSI------MHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred CCCCCCeEcHHHHHHhcC-CCceEEEE------EecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 8543 222332 12233221 23447788764 88899999999987
No 119
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=65.22 E-value=1.4e+02 Score=29.16 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=46.8
Q ss_pred hHHHHHHHHhCCCCEEEEcchHHHH----hcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 255 GLRLANELAKLDVPVKLLIDSAVAY----TMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 255 G~~la~~L~~~GI~vtlI~Dsav~~----~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+..+...|...|++|.++.|....+ .|..=|.||+=. -.|. .-=+..++-.||+.|+|++.++.+
T Consensus 145 A~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS----~sG~---t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 145 ASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAIS----FSGY---TREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEe----CCCC---cHHHHHHHHHHHHCCCcEEEEcCC
Confidence 4567888999999999999987765 235566665422 2232 223567788899999999998865
No 120
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=65.00 E-value=1.5e+02 Score=29.42 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=53.9
Q ss_pred CceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHH-HHHHH-HhCCCCEEEEcch--------HHHHhc-cc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLR-LANEL-AKLDVPVKLLIDS--------AVAYTM-DE 283 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~-la~~L-~~~GI~vtlI~Ds--------av~~~m-~~ 283 (396)
..+++|-|.+..+..++..+... ++.-+|++.+ |..-+.. ....+ ...|+++.+++-. .+...+ ++
T Consensus 62 ~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 139 (373)
T cd06453 62 DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTER 139 (373)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCC
Confidence 34666776666666666555431 1334566654 3333322 22333 3678888877522 122223 34
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.+.|++. ..-...|.+.. + -.++-+|++++++++|=
T Consensus 140 ~~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D 175 (373)
T cd06453 140 TKLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVD 175 (373)
T ss_pred ceEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEE
Confidence 5555542 22223444433 2 46888899999998873
No 121
>PRK13938 phosphoheptose isomerase; Provisional
Probab=64.84 E-value=1.2e+02 Score=28.28 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=30.1
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
+.-|.-..+=...++.+.+.|+++..++...-+.+.+.+|.+|.
T Consensus 120 iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 120 ISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred EcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 33333333345668888899999999998766666667887764
No 122
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=64.68 E-value=21 Score=29.94 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---------hHHHHhc--ccCCEEEE----cce
Q 016064 228 VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---------SAVAYTM--DEVDMVFV----GAD 292 (396)
Q Consensus 228 V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---------sav~~~m--~~vd~Vlv----GAd 292 (396)
+..+.+...+ ..|+++.+++ .++.|.+.|++|+.+.. ..+--++ +++|.||- |.+
T Consensus 15 ~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~~ 84 (116)
T cd01423 15 LLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGK 84 (116)
T ss_pred HHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCCC
Confidence 3344444443 4588887654 57888899999988732 2233333 68999987 443
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
....+| +.+=-.|-.+++|++-
T Consensus 85 ~~~~~~--------~~iRr~Av~~~ip~iT 106 (116)
T cd01423 85 RVLDND--------YVMRRAADDFAVPLIT 106 (116)
T ss_pred ccccCc--------EeeehhhHhhCCcccc
Confidence 333444 5566678889999963
No 123
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=64.40 E-value=1.5e+02 Score=29.21 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=49.6
Q ss_pred ccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc--c-hHHHHhccc---CC
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI--D-SAVAYTMDE---VD 285 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~--D-sav~~~m~~---vd 285 (396)
++...+.|++.+.+.....++....+.| -+|++.+ |.+.+...+ +...|.++..++ | ..+...+.. ..
T Consensus 96 ~~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~~--~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~i~~~~~~~ 169 (385)
T PRK05958 96 WFGAERALLFSSGYAANLAVLTALAGKG--DLIVSDK--LNHASLIDG--ARLSRARVRRYPHNDVDALEALLAKWRAGR 169 (385)
T ss_pred HhCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEeC--ccCHHHHHH--HHhcCCceEEeCCCCHHHHHHHHHhccCCC
Confidence 3334456666555554444443333223 3555543 444333333 334577766664 2 344444432 23
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++++ ...+...+|.... -..++-+|+++++++++
T Consensus 170 ~lvi-~~~~~~~~G~~~~--l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 170 ALIV-TESVFSMDGDLAP--LAELVALARRHGAWLLV 203 (385)
T ss_pred eEEE-EEecccCCCCcCC--HHHHHHHHHHhCCEEEE
Confidence 3333 2233322222111 35688889999998765
No 124
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=64.23 E-value=21 Score=33.58 Aligned_cols=79 Identities=24% Similarity=0.164 Sum_probs=52.3
Q ss_pred cChHHHHHHHHHHHHCCCeeEEEEeC--CCCC--chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEee-c
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVLCTE--GRPD--RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE-S 297 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~ViV~E--srP~--~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~-N 297 (396)
|.|..=.++|..+ |-.|+|+..+ ..+. ..-.+++.+|++.+- -+++...+ -|.+|+|||.|+. |
T Consensus 9 S~SPrR~elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ld 77 (193)
T COG0424 9 SSSPRRRELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLD 77 (193)
T ss_pred cCCHHHHHHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEEC
Confidence 4444445566555 8899999553 3332 224777888886541 11222222 5899999999887 9
Q ss_pred CCeeccccHHHHHHH
Q 016064 298 GGIINMMGTYQIALV 312 (396)
Q Consensus 298 G~v~nkiGT~~lAl~ 312 (396)
|-++.|-.+..-|..
T Consensus 78 grilgKP~~~~eA~~ 92 (193)
T COG0424 78 GRILGKPKDEEEARE 92 (193)
T ss_pred CEEecCCCCHHHHHH
Confidence 999999999877643
No 125
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=64.07 E-value=86 Score=32.09 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=54.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHHH-HHHhCCCCEEEEcc---hHHHHhcc-cCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLAN-ELAKLDVPVKLLID---SAVAYTMD-EVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la~-~L~~~GI~vtlI~D---sav~~~m~-~vd~VlvG 290 (396)
.+++|-|.+..+..++....+.|. +|++.+ |.+.+ ..++. .+...|++++.+.. ..+...+. +...|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~GD--~Vl~~~--~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAGD--HVLMVD--SAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCCC--EEEEcC--CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 566666666666666655544454 566653 44443 34444 45677999887632 34555553 44444432
Q ss_pred ceeEeecCCeeccccHH----HHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTY----QIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~----~lAl~Ak~~~vPvyV 322 (396)
+..|..|.. .++-+|++++++++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 234444543 467788999988876
No 126
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.95 E-value=62 Score=25.82 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=44.5
Q ss_pred CeeEEEEeCCCCCchhHHHHHHHHhCCCCEE-EEc---c--hHHHHhc--ccCCEEEEcceeEeecCCeeccccHHHHHH
Q 016064 240 KLFRVLCTEGRPDRSGLRLANELAKLDVPVK-LLI---D--SAVAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIAL 311 (396)
Q Consensus 240 k~f~ViV~EsrP~~eG~~la~~L~~~GI~vt-lI~---D--sav~~~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl 311 (396)
..|+++.+++ .++.|.+.||+|. .+. + -.+...+ +++|+||.=.+. .|....+ ..+.+--
T Consensus 12 lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~~-d~~~iRr 79 (90)
T smart00851 12 LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPHE-DGKALRR 79 (90)
T ss_pred CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceecc-CcHHHHH
Confidence 3588887764 3677889999985 432 1 1133333 689999874422 1333333 4567888
Q ss_pred HhhhCCCcEE
Q 016064 312 VAHSMNKPVY 321 (396)
Q Consensus 312 ~Ak~~~vPvy 321 (396)
+|-.++||.+
T Consensus 80 ~A~~~~Ip~~ 89 (90)
T smart00851 80 AAENIDIPGA 89 (90)
T ss_pred HHHHcCCCee
Confidence 8999999975
No 127
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=63.60 E-value=81 Score=25.77 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHHhCCCCEEEEcc--h----HHHHhc--ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 261 ELAKLDVPVKLLID--S----AVAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 261 ~L~~~GI~vtlI~D--s----av~~~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.+.+.|+++..+.. . ++..+. .++|.|++|...=..-+ ---.|+..-.+ .++.+.||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~--~~~lGs~~~~v-~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLR--DRLFGGVIDQV-LESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCcc--ceecCchHHHH-HhcCCCCEEEe
Confidence 34567988876542 2 233333 46999999998532211 12257644444 57788999875
No 128
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=63.57 E-value=71 Score=26.18 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=48.9
Q ss_pred HHHHHHHCCCeeEEE-EeCCCC---CchhHHH----HHHHHhCCCCEEEEcchHHHHhc------ccCCEEEEcceeEee
Q 016064 231 VLKMAAQNKKLFRVL-CTEGRP---DRSGLRL----ANELAKLDVPVKLLIDSAVAYTM------DEVDMVFVGADGVVE 296 (396)
Q Consensus 231 ~L~~A~~~gk~f~Vi-V~EsrP---~~eG~~l----a~~L~~~GI~vtlI~Dsav~~~m------~~vd~VlvGAd~V~~ 296 (396)
....|.+.+..++++ |.+... ..++.+. .+.+.+.|+++..+.....+..+ .++|.+++|+.+=
T Consensus 19 a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~-- 96 (124)
T cd01987 19 AARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRR-- 96 (124)
T ss_pred HHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCC--
Confidence 333344446667766 554432 1233332 34455678887666554343322 4699999999853
Q ss_pred cCCeec-cccHHHHHHHhhhCCCcEEEe
Q 016064 297 SGGIIN-MMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 297 NG~v~n-kiGT~~lAl~Ak~~~vPvyV~ 323 (396)
|.+-. -.|+..--++-+.-++||.|+
T Consensus 97 -~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 97 -SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred -chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 22222 245544444444358888876
No 129
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=63.45 E-value=48 Score=29.47 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC-CCCEEEEcc------hHHHHhc--ccCCEEEEcceeEeecC
Q 016064 228 VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL-DVPVKLLID------SAVAYTM--DEVDMVFVGADGVVESG 298 (396)
Q Consensus 228 V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~-GI~vtlI~D------sav~~~m--~~vd~VlvGAd~V~~NG 298 (396)
+..+.+...+.=..|+++.+++ .++.|.+. ||+|+.+.. ..+...+ +++|+||-=.|-. |
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---T 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---C
Confidence 4455555544311488887765 56778888 999987631 2233433 6899987644322 2
Q ss_pred CeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 299 GIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 299 ~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
.--.....+.+--+|-.++||++---.+
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCEEcCHHH
Confidence 1111344668888899999999864433
No 130
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=63.45 E-value=49 Score=33.38 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=50.3
Q ss_pred chhHHHHHHHHhCCCCEEEEcch--------HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhh----CCCcE
Q 016064 253 RSGLRLANELAKLDVPVKLLIDS--------AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHS----MNKPV 320 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Ds--------av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~----~~vPv 320 (396)
.+..+-|+.|.+.||++++|... ++....++...|++ ++++....-.|+...+.++.+ ...|+
T Consensus 214 ~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~-----vEE~~~~gGlG~~va~~l~e~~f~~~~~pv 288 (327)
T CHL00144 214 HHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLI-----VEECMKTGGIGAELIAQINEHLFDELDAPI 288 (327)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEE-----EECCCCCCCHHHHHHHHHHHhchhhcCCCe
Confidence 34445566777778888877533 33344566666654 677888888999999999887 46788
Q ss_pred EEecccccccc
Q 016064 321 YVAAESYKFAR 331 (396)
Q Consensus 321 yV~aes~Kf~~ 331 (396)
.-++-...|.+
T Consensus 289 ~rl~~~d~~~~ 299 (327)
T CHL00144 289 VRLSSQDVPTP 299 (327)
T ss_pred EEEccCCCcCC
Confidence 87775544443
No 131
>PRK05764 aspartate aminotransferase; Provisional
Probab=63.41 E-value=82 Score=31.58 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=52.0
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m- 281 (396)
+..+.+++|.|.+..+..++....+.|. +|++ ++ |.+.+.. ..+...|+++..++- ..+...+
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3445678887777776666655544443 3444 33 5554433 234456887776542 1222223
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++..|++- .---..|.++..-=--.++-+|+++++++++
T Consensus 163 ~~~~~v~~~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN-SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 233333332 1111123333222223567778899988876
No 132
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=63.17 E-value=73 Score=31.78 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhcccc-CceEEeecChHHHHHHHHHHHH-CCCeeEEEEeCCCCCchhHHH-HHHHH-hCCCCEEEE
Q 016064 197 ISYKARKIIAMLSQDFIFD-GCTILVHGFSRVVMEVLKMAAQ-NKKLFRVLCTEGRPDRSGLRL-ANELA-KLDVPVKLL 272 (396)
Q Consensus 197 ~~~~a~~~Ia~~a~~~I~d-g~~ILT~~~S~~V~~~L~~A~~-~gk~f~ViV~EsrP~~eG~~l-a~~L~-~~GI~vtlI 272 (396)
....+++.|++..- ... .++++|.|.+..+..++..... ..+.-+|+++... ..|... ...+. ..|++|++|
T Consensus 44 ~~~~~r~~la~~lg--~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i 119 (371)
T PF00266_consen 44 ILEEAREALAKLLG--APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVI 119 (371)
T ss_dssp HHHHHHHHHHHHHT--SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHhcC--Cccccccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccc
Confidence 33455555555432 123 4566775555555555544411 1223356655543 333342 44454 789999988
Q ss_pred cc--------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 273 ID--------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 273 ~D--------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+. ..+...+ ++.+.|.+-.-. ..+| +.+. --.++-+||+++++++|
T Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~-~~tG-~~~p--i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 120 PADPGGSLDLEDLEEALNPDTRLVSISHVE-NSTG-VRNP--IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp EEGTTSSCSHHHHHHHHHTTESEEEEESBE-TTTT-BBSS--HHHHHHHHHHTTSEEEE
T ss_pred cccccchhhhhhhhhhhccccceEEeeccc-cccc-EEee--eceehhhhhccCCceeE
Confidence 74 2233333 566666554322 3444 4444 44677888999998887
No 133
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=63.06 E-value=47 Score=33.01 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=69.4
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEee
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~ 296 (396)
|..+..-....|...|.++.++|.+.-|+++++-+....++|.+..++.|+ .++=-+++|.+-....+...-+.....
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 777777778889999999999898888888888766555677777777775 444444555443333322222222333
Q ss_pred cC--CeeccccHHHHHHH--hhhCCCcEE
Q 016064 297 SG--GIINMMGTYQIALV--AHSMNKPVY 321 (396)
Q Consensus 297 NG--~v~nkiGT~~lAl~--Ak~~~vPvy 321 (396)
.| ++++..|+...+++ +++.++.|-
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 46 47999998887766 677777763
No 134
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=63.05 E-value=69 Score=31.17 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=51.0
Q ss_pred CceEEeecChHH---HHHHHHHHHHCCCeeE--EEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhcccCCEEEE
Q 016064 216 GCTILVHGFSRV---VMEVLKMAAQNKKLFR--VLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTMDEVDMVFV 289 (396)
Q Consensus 216 g~~ILT~~~S~~---V~~~L~~A~~~gk~f~--ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m~~vd~Vlv 289 (396)
..+++|+|.|.. ...+++...+..+.++ |++-.+.|.. .++-+.....+ ++.+... .-+..+|..+|.+|.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKEYP-NIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEE
Confidence 357888886653 3445544433334444 4443444543 33433333322 5555554 458899999999987
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
. .| ....=+-..|+|++++.
T Consensus 248 ~-------------~G--~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 248 A-------------AG--STSWERCCLGLPSLAIC 267 (279)
T ss_pred C-------------Cc--hHHHHHHHcCCCEEEEE
Confidence 4 23 12333556789999875
No 135
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.04 E-value=94 Score=32.67 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=58.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc----hHHHHhcccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID----SAVAYTMDEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D----sav~~~m~~vd~VlvG 290 (396)
..|+|-|....+..+|..+.+.|. +|++. .+.+.|- .+ ...+...|+.++++.. ..+...+..-+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD--~VI~~--~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGD--HLLCS--STVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCC--EEEEC--CCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 366666666666666665554454 66663 3555443 33 4447889999998753 356666654455555
Q ss_pred ceeEeecCCeeccc----cHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMM----GTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nki----GT~~lAl~Ak~~~vPvyV 322 (396)
.+.. . |.. ---.++-+||++|++++|
T Consensus 153 ~e~p-g-----nP~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 153 AESL-G-----NPAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EEcC-C-----CccccccCHHHHHHHHHHcCCEEEE
Confidence 3432 1 233 356788899999998877
No 136
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.80 E-value=52 Score=27.10 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHhCCCCEEEEcch--HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 259 ANELAKLDVPVKLLIDS--AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 259 a~~L~~~GI~vtlI~Ds--av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
-+.+.+.|+++.+..-+ .+.....+.|.|++|..--+.- ..+--.+..+++||.+.-
T Consensus 24 ~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 24 NKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeC
Confidence 35566788877665544 3444668899999997653321 123344667889998754
No 137
>PRK07568 aspartate aminotransferase; Provisional
Probab=62.74 E-value=91 Score=31.31 Aligned_cols=102 Identities=9% Similarity=0.076 Sum_probs=51.9
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-----------hHHHHhc-
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-----------SAVAYTM- 281 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-----------sav~~~m- 281 (396)
....+++|-|.+..+..++....+.|. +|++.+ |.+.+.. ..+...|+++..++. ..+...+
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 87 EPDEILITNGGSEAILFAMMAICDPGD--EILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred CcceEEEcCChHHHHHHHHHHhcCCCC--EEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 445677777777766555544333343 566654 6554432 234566887776652 1222222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++.+|++.. ---..|.++..---..++-.|+++++.+++
T Consensus 161 ~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 161 PKTKAILISN-PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccceEEEEEC-CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 2334443321 111223333322234577788999987765
No 138
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=62.67 E-value=1.1e+02 Score=28.85 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=68.4
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-CCCCc--------hh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-GRPDR--------SG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-srP~~--------eG----~~la~~L~~~G- 266 (396)
++..+.+.|. +.+|+..|-.++=-.+++.....|. ++.++ ++| +.-.. -| ..+++.|.+.+
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP 89 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence 4445555665 4688888988876667766666674 45555 222 21111 13 24466676654
Q ss_pred -CCEEEEcc----hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 267 -VPVKLLID----SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 267 -I~vtlI~D----sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
++++.+.. .....+++++|.||...|..- .-..+.-.|+.+++|++.+.
T Consensus 90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 90 DVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55555442 234456788999998877542 23567788899999998764
No 139
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.05 E-value=82 Score=32.83 Aligned_cols=97 Identities=19% Similarity=0.312 Sum_probs=53.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEc--c-hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLI--D-SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~--D-sav~~~m-~~vd~VlvG 290 (396)
..+++-+.+..+..+|....+.|. +|++.+ |.+.| ..+ ...+...|+++.++. | ..+...+ ++...|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 455555555555555555554454 455544 33333 223 333455688888774 2 3444444 45555665
Q ss_pred ceeEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.+. ..|.+.. -..++-+|++++++++|
T Consensus 150 -esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 -ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred -eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 3332 2344443 26677889999988876
No 140
>PLN02656 tyrosine transaminase
Probab=61.65 E-value=1.2e+02 Score=30.84 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=51.1
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhcc
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTMD 282 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m~ 282 (396)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+...+..+ .|+++..++. ..+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455688887777766555544443343 56654 3555454443333 5777766642 11222222
Q ss_pred -cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+..+|++- .-=-..|.++++-=-..++-+|+++++++++
T Consensus 168 ~~~~~v~l~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVALVII-NPGNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22223222 1111223333322233467778899988775
No 141
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=61.46 E-value=85 Score=31.81 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred HHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-CCCCc----------hh----HHHHHHHHh
Q 016064 204 IIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-GRPDR----------SG----LRLANELAK 264 (396)
Q Consensus 204 ~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-srP~~----------eG----~~la~~L~~ 264 (396)
.|+..+.+.|.+ .+|+..|-++.=-.+.+...+.|- ++.++ ++| |.=.. +| ..+++.|.+
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 356666777765 578888887765555555555674 45544 222 11111 12 223566665
Q ss_pred C--CCCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 265 L--DVPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 265 ~--GI~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
. ++.++.+. ...+..+++++|.||.+.|..-. -+.+.-+|+.+++|++..+
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 5 45555543 23345567899999999875432 3557788999999998653
No 142
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.37 E-value=60 Score=33.92 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=55.2
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
+..|+..|...+=..+.+.+.+.| .+|.+.|.++...=..+..+|.+.|+.+..-.+. ...+.+.|.|++.. +|-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Sp-gi~ 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTP-SMR 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECC-CCC
Confidence 567888877665444444444445 5788888776432223345588889877654332 23347788888863 222
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
. +.+....|++.++|++
T Consensus 89 ~---------~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 89 I---------DSPELVKAKEEGAYIT 105 (458)
T ss_pred C---------CchHHHHHHHcCCcEE
Confidence 2 2345666777777775
No 143
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=61.31 E-value=1.2e+02 Score=31.44 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=58.8
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFV 289 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~Vlv 289 (396)
...|+|-+.+..+...|....+.|. +|++.+ |.+.|. .+ ...+...|++++.+.. ..+...+ ++..+|++
T Consensus 73 ~~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l 148 (418)
T TIGR01326 73 VAALAVASGQAAITYAILNLAQAGD--NIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA 148 (418)
T ss_pred CeEEEEccHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE
Confidence 3577777777777777766655554 566543 555443 22 4456778999988763 2344444 35556655
Q ss_pred cceeEee-cCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 290 GADGVVE-SGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 290 GAd~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.... .|.+.. --.++-+|++++++++|
T Consensus 149 --e~p~NPtg~v~d---l~~I~~la~~~~i~liv 177 (418)
T TIGR01326 149 --ETIGNPAINVPD---IEAIAEVAHAHGVPLIV 177 (418)
T ss_pred --ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 33321 233322 24677789999998877
No 144
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=61.02 E-value=1.3e+02 Score=28.98 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=66.3
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE---EeCCCCC-c--------hh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL---CTEGRPD-R--------SG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi---V~EsrP~-~--------eG----~~la~~L~~~G- 266 (396)
++..+.+.|.+ .+|+..|-++.--.+++.....| +++.++ ++|-.-. . -| ..++++|.+.+
T Consensus 22 ~g~~~Q~~L~~-~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp 100 (245)
T PRK05690 22 FDFDGQEKLKA-ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP 100 (245)
T ss_pred cCHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC
Confidence 44555566655 68888888776555666656667 456666 3332111 1 12 22355666553
Q ss_pred -CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 -VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 -I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+. ...+..+++++|.||...|.. .--+.+.-+|+.+++|++..
T Consensus 101 ~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~---------~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 101 HIAIETINARLDDDELAALIAGHDLVLDCTDNV---------ATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEecCCCH---------HHHHHHHHHHHHhCCEEEEe
Confidence 5554443 223445678999999988743 12356778899999999864
No 145
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=61.00 E-value=1.3e+02 Score=30.35 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=32.8
Q ss_pred hHHHHhcccCCEEEEccee----EeecCCeeccc----cHHHHHHHhhhCCCcEEEe
Q 016064 275 SAVAYTMDEVDMVFVGADG----VVESGGIINMM----GTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 275 sav~~~m~~vd~VlvGAd~----V~~NG~v~nki----GT~~lAl~Ak~~~vPvyV~ 323 (396)
.++-.++..-..||++.++ +-.||.+.|-. +=...+++|...+.-.++.
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 4556667777778888775 44677766643 3455578899888765554
No 146
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=60.93 E-value=1.8e+02 Score=28.80 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=48.1
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-HHHHH-HhCCCCEEEEcch--------HHHHhc-ccCC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-LANEL-AKLDVPVKLLIDS--------AVAYTM-DEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-la~~L-~~~GI~vtlI~Ds--------av~~~m-~~vd 285 (396)
.+++|.|.+..+..++....+.| -+|++.+ +...+.. ....+ ...|+++.++.-. .+...+ ++..
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLKEG--DHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccCCC--CEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 46666666665555554432323 4666654 2222221 12233 3448888776521 122223 2333
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.|++ ...-...|.+.. + -.++-+|++++++++|
T Consensus 140 ~v~~-~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVV-SHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEE-ECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 3333 222223444443 2 3577789999998876
No 147
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=60.75 E-value=1.4e+02 Score=29.26 Aligned_cols=38 Identities=5% Similarity=-0.099 Sum_probs=31.3
Q ss_pred chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
.+-.++++.+++.|+++..|++..-+.+-+.+|.+|.-
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 34456699999999999999998777778889998853
No 148
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=60.63 E-value=38 Score=35.57 Aligned_cols=121 Identities=16% Similarity=0.246 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccccCceEEeecC--hHHHHHHHHHHHHCCCe-eEEEEe--CCCCCchhHHHHHHHHhCCCCE------
Q 016064 201 ARKIIAMLSQDFIFDGCTILVHGF--SRVVMEVLKMAAQNKKL-FRVLCT--EGRPDRSGLRLANELAKLDVPV------ 269 (396)
Q Consensus 201 a~~~Ia~~a~~~I~dg~~ILT~~~--S~~V~~~L~~A~~~gk~-f~ViV~--EsrP~~eG~~la~~L~~~GI~v------ 269 (396)
-++.+-+--..++-.|..++.|-+ +..|+.|.+.|.++|.. ||+|=. |-|-.... .+...+.|-.+
T Consensus 71 lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~a---i~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 71 LKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTA---IKAAKKHGAHVQGTISY 147 (472)
T ss_pred HHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHH---HHHHHhcCceeEEEEEe
Confidence 333343334455666777777653 45678888888887743 776622 22222211 22223333222
Q ss_pred EEEcchHHHHhcccCC-EEEEcceeEee--cCCeeccccHHHHHHHhh-hCCCcEEEec
Q 016064 270 KLLIDSAVAYTMDEVD-MVFVGADGVVE--SGGIINMMGTYQIALVAH-SMNKPVYVAA 324 (396)
Q Consensus 270 tlI~Dsav~~~m~~vd-~VlvGAd~V~~--NG~v~nkiGT~~lAl~Ak-~~~vPvyV~a 324 (396)
|.-|-..+-+++.-+. ..=+|+|+|+= =-|+++.-..|.+.-..| ..++|+-+=|
T Consensus 148 T~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 148 TTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred ccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEec
Confidence 1122233333332221 22245565543 236888888888887776 4889998865
No 149
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=60.48 E-value=19 Score=37.28 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 277 VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 277 v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
+-..++.+|.||.|==++-. ....--....+|-.|+.++|||+++|.+....
T Consensus 277 l~~~l~~ADlVITGEG~~D~--Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 277 LEQKIKDADLVITGEGRLDR--QSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHHHhcCCCEEEECCCcccc--cccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 44567999999999655433 22233356778889999999999999987543
No 150
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=59.75 E-value=44 Score=30.61 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=49.1
Q ss_pred hhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 210 QDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 210 ~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
-+++-.|.++++.||..+=.++-..++..| -+|+|+|..|.. +-+-...|.++.- +..+++++|.++.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~-----alqA~~dGf~v~~-----~~~a~~~adi~vt 84 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIR-----ALQAAMDGFEVMT-----LEEALRDADIFVT 84 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHH-----HHHHHHTT-EEE------HHHHTTT-SEEEE
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHH-----HHHhhhcCcEecC-----HHHHHhhCCEEEE
Confidence 456778999999999887666666665444 689999999953 2233447888764 3345788998775
Q ss_pred --cceeE--------eecCCeeccccHH
Q 016064 290 --GADGV--------VESGGIINMMGTY 307 (396)
Q Consensus 290 --GAd~V--------~~NG~v~nkiGT~ 307 (396)
|...| +.||.++..+|.+
T Consensus 85 aTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 85 ATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp -SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred CCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 43333 3466666666654
No 151
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=59.71 E-value=35 Score=34.55 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=66.6
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHH-hCCCCEEEEcchHHHHhcccCCEEEEcc--ee
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELA-KLDVPVKLLIDSAVAYTMDEVDMVFVGA--DG 293 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~-~~GI~vtlI~Dsav~~~m~~vd~VlvGA--d~ 293 (396)
|..+.+=....|...+.+|.+.|.+.-|+++|.-|...|.++.+.+. +.| +.+|=-++.+.+-+.. ..+|. ..
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~~ 165 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPGH 165 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCcC
Confidence 66666677888899999999999999999999999988888764443 244 3555555555444322 11222 11
Q ss_pred EeecC--CeeccccHHHHHHH--hhhCCCcEE
Q 016064 294 VVESG--GIINMMGTYQIALV--AHSMNKPVY 321 (396)
Q Consensus 294 V~~NG--~v~nkiGT~~lAl~--Ak~~~vPvy 321 (396)
++.-| +++++.||+...++ +...++-+-
T Consensus 166 ~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S 197 (317)
T PTZ00187 166 IHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQS 197 (317)
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEE
Confidence 23345 68999997766655 455555553
No 152
>PRK10342 glycerate kinase I; Provisional
Probab=59.31 E-value=21 Score=37.06 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=43.9
Q ss_pred hhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 254 SGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 254 eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
.|.++.-++.. +-..++.+|.||.|==++-. ....--....+|-.|+.++|||+++|.+....
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~D~--QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRIDS--QSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcCcc--cccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 57777665543 44567999999998644332 22333345678889999999999999986544
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.29 E-value=73 Score=35.57 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred hhhcCCccChhHHHHHHHHhcc
Q 016064 57 RAAHHGVVTSDWLAQSQEAATR 78 (396)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ 78 (396)
|.||-|||++||.+-|+.|+.-
T Consensus 577 ~iaclgVv~~DW~~LA~~ALeA 598 (1081)
T KOG1538|consen 577 QIACLGVTDTDWRELAMEALEA 598 (1081)
T ss_pred cccccceecchHHHHHHHHHhh
Confidence 6799999999999999999654
No 154
>PLN02828 formyltetrahydrofolate deformylase
Probab=59.16 E-value=45 Score=32.91 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=42.1
Q ss_pred ceEEeecChHHHHHHHHHHHHCCC-eeEEEEeCC-CCCchhHHHHHHHHhCCCCEEEEcc-------hHHHHhcccCCEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKK-LFRVLCTEG-RPDRSGLRLANELAKLDVPVKLLID-------SAVAYTMDEVDMV 287 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk-~f~ViV~Es-rP~~eG~~la~~L~~~GI~vtlI~D-------sav~~~m~~vd~V 287 (396)
-.||.-++++....+|.+ .++|. ..+|.++=| +|...+..+.+...+.|||+.+++. ..+...+.++|.+
T Consensus 73 iavlvSg~g~nl~~ll~~-~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHR-WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHHh-hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 456666677777776655 44453 355553333 3222233444555678999998764 2344455667777
Q ss_pred EEc
Q 016064 288 FVG 290 (396)
Q Consensus 288 lvG 290 (396)
++.
T Consensus 152 VLA 154 (268)
T PLN02828 152 VLA 154 (268)
T ss_pred EEe
Confidence 664
No 155
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=58.20 E-value=1e+02 Score=31.21 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=49.5
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhcc---
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTMD--- 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m~--- 282 (396)
...++|.|.+.....++......| -+|++. ++..-+... .+...|+++..++. ..+...+.
T Consensus 79 ~~~~~~~g~t~a~~~al~~l~~~g--d~Vlv~--~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 152 (387)
T PRK09331 79 DEARVTHGAREGKFAVMHSLCKKG--DYVVLD--GLAHYTSYV--AAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVK 152 (387)
T ss_pred CcEEEeCCHHHHHHHHHHHhcCCC--CEEEEC--CCchHHHHH--HHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhh
Confidence 356666666655555555544333 356554 333333322 24556888777652 22223332
Q ss_pred -----cCCEEEEcceeEeecCCeeccccHH----HHHHHhhhCCCcEEE
Q 016064 283 -----EVDMVFVGADGVVESGGIINMMGTY----QIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -----~vd~VlvGAd~V~~NG~v~nkiGT~----~lAl~Ak~~~vPvyV 322 (396)
++..|++. . +-+..|+. .++-+||+++++++|
T Consensus 153 ~~~~~~~~lV~l~--~------~~~~tG~~~~l~~I~~la~~~g~~liv 193 (387)
T PRK09331 153 EETGKPPALALLT--H------VDGNYGNLADAKKVAKVAHEYGIPFLL 193 (387)
T ss_pred hccCCCCEEEEEE--C------CCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 35555553 1 11233333 578889999999887
No 156
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=57.86 E-value=1e+02 Score=31.69 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=52.4
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHH-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLA-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
..|++-+.+..+..++....+.|. +|++.+ |.+.|. .+. ..+...|+++.++.. ..+...+ ++...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSIK--DTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 456665555555555544444454 555543 455543 333 346678998887552 2343444 345555542
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. ---..|.+.. -..++-+|++++++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112233332 23578889999998876
No 157
>PRK07503 methionine gamma-lyase; Provisional
Probab=57.82 E-value=1.2e+02 Score=31.22 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=53.0
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
..|++-+.+..+..++....+.|. +|++.. |.+.+. .+ ...+...|+++..+.. ..+...+ ++..+|++
T Consensus 82 ~~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l- 156 (403)
T PRK07503 82 AAVALASGMGAITATLWTLLRPGD--EVIVDQ--TLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF- 156 (403)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEEcc--CccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-
Confidence 356665555555555544444454 566543 444332 22 3456678998888753 2344444 34555554
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..-.-..|.+.. -..++-+|++++++++|
T Consensus 157 e~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 157 ETPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred eCCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 222222344333 25677888999998877
No 158
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=57.69 E-value=1.6e+02 Score=29.57 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CceEEeecChHHHHHHHHHHHHCCCeeEEEEe-CCCCCchhHH
Q 016064 181 NSARSRLIERAEKFGEISYKARKIIAMLSQDFIFD--GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCT-EGRPDRSGLR 257 (396)
Q Consensus 181 ~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~d--g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~-EsrP~~eG~~ 257 (396)
.++++...+.++.|.- -....+.+.+..+++..- ..+++|-|.+.....++......| -+|+++ -.+|.+....
T Consensus 36 ~~~~~~~~~~~~~~~g-~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~~s~~ 112 (346)
T TIGR03576 36 FKIDEEDLELLETYVG-PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAHPSIP 112 (346)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCchhHH
Confidence 4566667776666620 011222333333344432 456666665655555555444334 356654 3356543322
Q ss_pred HHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 258 LANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 258 la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
....-.|.++....|-.-....++..+|++ ..-..+|.++.+.==..++-+|+.++++++|
T Consensus 113 --~~~~l~ga~~~~~~~l~~l~~~~~~~lIii--tg~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 113 --RSCKLAGAEYFESDELSELKKIDGTSLVVI--TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred --HHHHHcCCEEeccCCHHHHhhCcCceEEEE--ECCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 223334655533333111111233444554 1113345555444444566678889987775
No 159
>PRK07179 hypothetical protein; Provisional
Probab=57.62 E-value=1.3e+02 Score=30.66 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=53.8
Q ss_pred ccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE--cc-hHHHHhccc--CCE
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL--ID-SAVAYTMDE--VDM 286 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI--~D-sav~~~m~~--vd~ 286 (396)
++.-...|+|.|.+.....+|+.....| -+|++.. +... .+...+...|+++... .| ..+...+.+ ...
T Consensus 111 ~~g~~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~--s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~l 184 (407)
T PRK07179 111 FTGFESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHM--SLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGI 184 (407)
T ss_pred HhCCCcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCH--HHHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeE
Confidence 4443466777766666666665554434 3555532 2221 1223334567766555 23 344455543 223
Q ss_pred EEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 287 VFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
|+ .+.+....|.+... ..++-+|+++++.++|
T Consensus 185 V~--v~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 185 IV--VDSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred EE--ECCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 33 35565544555553 4677889999987665
No 160
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=56.82 E-value=54 Score=33.17 Aligned_cols=107 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred ccccCceEEeecChHHHHHHHHHHH-HCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----hHHHHhcccCCE
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKMAA-QNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----SAVAYTMDEVDM 286 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~A~-~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----sav~~~m~~vd~ 286 (396)
+...+.+||..|.++-|-.-|.+.. ++| .+|+++..++.. .+ .. ...++.. ...| ..+..++.++|.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~---~~-~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE---HM-SE-DMFCHEF-HLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc---cc-cc-ccccceE-EECCCCCHHHHHHHHhCCCE
Confidence 5567889999999887766554443 334 567766533210 00 00 0011221 2223 234445678898
Q ss_pred EEEcceeEe------ecCC---eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 287 VFVGADGVV------ESGG---IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 287 VlvGAd~V~------~NG~---v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
||--|-.+- .+-. -.|-.||..++-+|+.+++.-+|.+.+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 876553221 1110 136779999999999998755554433
No 161
>PRK14364 Maf-like protein; Provisional
Probab=56.64 E-value=33 Score=31.80 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCeeEEE---EeCCCCCch-hHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEe-ecCCeeccccHHHHH--
Q 016064 239 KKLFRVL---CTEGRPDRS-GLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVV-ESGGIINMMGTYQIA-- 310 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~e-G~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~-~NG~v~nkiGT~~lA-- 310 (396)
|-.|+|+ +.|+.+..+ -..++..|+..+- -.+.+ .-+.+++|||.|. -||.++.|-.+..-|
T Consensus 16 g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA----------~~v~~~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA~~ 85 (181)
T PRK14364 16 GLNFEIYSPDIDESVHEGELVHQYVERLAREKA----------QAVLNIFPDSVIIAADTSLGLDGQIIGKPDSKQHAFD 85 (181)
T ss_pred CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEEECCEEecCCCCHHHHHH
Confidence 8889988 445443332 4566777776441 11122 2378999999966 599999999998766
Q ss_pred HHhhhCCCcE
Q 016064 311 LVAHSMNKPV 320 (396)
Q Consensus 311 l~Ak~~~vPv 320 (396)
++-+-.|...
T Consensus 86 ~L~~lsG~~h 95 (181)
T PRK14364 86 IWKQLSGRWH 95 (181)
T ss_pred HHHHhCCCCe
Confidence 3444455543
No 162
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=56.10 E-value=1.6e+02 Score=27.99 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccCceEEe-ecChHHHHHHHH-HHHHCCCeeEEEEeC------------
Q 016064 184 RSRLIERAEKFG-EISYKARKIIAMLSQDFIFDGCTILV-HGFSRVVMEVLK-MAAQNKKLFRVLCTE------------ 248 (396)
Q Consensus 184 k~~Lie~i~~f~-e~~~~a~~~Ia~~a~~~I~dg~~ILT-~~~S~~V~~~L~-~A~~~gk~f~ViV~E------------ 248 (396)
++.+.+..+.+. +.+.++.+.|.+. .|.++++ .|+|+.|-+-+. +...-| +.+|++-
T Consensus 13 ~~~l~~~~~~~~~~~~~~a~~~i~~~------~gkv~V~G~GkSG~Igkk~Aa~L~s~G--~~a~fv~p~ea~hgdlg~i 84 (202)
T COG0794 13 AEALLELAERLDDEDFVRAVELILEC------KGKVFVTGVGKSGLIGKKFAARLASTG--TPAFFVGPAEALHGDLGMI 84 (202)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc------CCcEEEEcCChhHHHHHHHHHHHHccC--CceEEecCchhccCCccCC
Confidence 344445555555 5666777777653 4554444 778998776553 222223 4444332
Q ss_pred ---------CCCCchh--HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 249 ---------GRPDRSG--LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 249 ---------srP~~eG--~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
|..+... ..++..+++.|+++.-|+-..=+.+-+..|.|+.
T Consensus 85 ~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 85 TPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred CCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 2222111 2447888899998877764333333455666665
No 163
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=55.94 E-value=54 Score=31.70 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=50.2
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEee
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~ 296 (396)
.|..+|.++.+-+.+.++..+...+++. +++..|...... .+.|+++ ..| +..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~~--~~d--l~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVAI--TDD--LEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCccc--cCC--HHHhccCCCEEEECC-----
Confidence 5777787444444344444434457766 566655432211 3334432 222 334456677776443
Q ss_pred cCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 297 SGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 297 NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
...+...++..|-++|+||++.
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 5556688999999999999965
No 164
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=55.83 E-value=42 Score=33.51 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=65.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEee
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~ 296 (396)
+.-+.+=...-+...+.+|.+.|.+.-|+++|.=|...=.++.+++.+.| +.+|=-+.-+.+.+..-++=+=...++.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 45555666677788888999989999999999999998888888898888 5666666666666664333221255565
Q ss_pred cC--CeeccccHHHH
Q 016064 297 SG--GIINMMGTYQI 309 (396)
Q Consensus 297 NG--~v~nkiGT~~l 309 (396)
-| ++++|.||+.-
T Consensus 145 ~G~IGiVSrSGTLTy 159 (293)
T COG0074 145 PGNIGIVSRSGTLTY 159 (293)
T ss_pred CCceEEEecCcchHH
Confidence 56 46888887553
No 165
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=55.83 E-value=2.2e+02 Score=28.68 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred hHHHHhcccCCEEEEcce----eEeecCCeeccc----cHHHHHHHhhhCCCcEEEec
Q 016064 275 SAVAYTMDEVDMVFVGAD----GVVESGGIINMM----GTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 275 sav~~~m~~vd~VlvGAd----~V~~NG~v~nki----GT~~lAl~Ak~~~vPvyV~a 324 (396)
.++-.++.+--.+|+..+ .+..||.+.|-- +=...+++|...+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 455566666666777766 344555554432 25667788898887665543
No 166
>PRK09028 cystathionine beta-lyase; Provisional
Probab=55.75 E-value=1.3e+02 Score=31.21 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=55.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHH-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLA-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.++|-|.+..+..++....+.|. +|++.+ |.+.| ..+. ..|...|+++.++.. ..+...+ ++..+|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 567776766666666655555554 566664 34434 3444 356778999988642 3455555 445445542
Q ss_pred ceeEeecCCeeccccH----HHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGT----YQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT----~~lAl~Ak~~~vPvyV 322 (396)
..-|..|. ..++-+||+++++++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23344443 4567778889987765
No 167
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=55.69 E-value=77 Score=29.46 Aligned_cols=69 Identities=25% Similarity=0.431 Sum_probs=40.0
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEEc----------chHHHHhc--ccC
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLLI----------DSAVAYTM--DEV 284 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI~----------Dsav~~~m--~~v 284 (396)
.||.-|+++....++....+.+....|. |+-.+|..++. ....+.|||+..+. |..+...+ .++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 4666666777776666655544445555 33455655443 44466799998755 22333444 257
Q ss_pred CEEEE
Q 016064 285 DMVFV 289 (396)
Q Consensus 285 d~Vlv 289 (396)
|.+++
T Consensus 81 D~iv~ 85 (190)
T TIGR00639 81 DLVVL 85 (190)
T ss_pred CEEEE
Confidence 76665
No 168
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=55.66 E-value=1.5e+02 Score=30.32 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=50.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvG 290 (396)
..|++-|.+..+...+......|. +|++.. |.+.|. .+ ...+...|+.+..+... .+...+ ++..+|++-
T Consensus 76 ~av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le 151 (391)
T TIGR01328 76 AAVATSSGMGAIAATLLTILKAGD--HLISDE--CLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE 151 (391)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEec--CcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE
Confidence 356655555555555544444444 466543 444332 22 44466789888887643 232233 333344321
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.-.-..|.+.. --.++-+|++++++++|
T Consensus 152 -~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 -TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112343332 23577778999998887
No 169
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=55.34 E-value=33 Score=31.73 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=48.8
Q ss_pred eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCee----ccccHHHHHHHhhhC
Q 016064 241 LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGII----NMMGTYQIALVAHSM 316 (396)
Q Consensus 241 ~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~----nkiGT~~lAl~Ak~~ 316 (396)
++-|.+.+.-+.-....+.+.|.+.|+++..+..... .-++++|.++++-- .+... ...+-...-.-+-..
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~ 76 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEE 76 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHC
Confidence 3567777777666666778889999998776665432 23567887777531 11111 112222222223347
Q ss_pred CCcEEEeccccc
Q 016064 317 NKPVYVAAESYK 328 (396)
Q Consensus 317 ~vPvyV~aes~K 328 (396)
++|++-+|--+-
T Consensus 77 ~~pilGIC~G~Q 88 (200)
T PRK13527 77 GLPILGTCAGLI 88 (200)
T ss_pred CCeEEEECHHHH
Confidence 899998774443
No 170
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=55.33 E-value=13 Score=36.31 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=23.1
Q ss_pred hcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 280 TMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 280 ~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+-+++|.++++.|....+ +...+...+.++++|+|...+.
T Consensus 181 l~~~~da~~~~~~~~~~~-------~~~~i~~~~~~~~iPv~~~~~~ 220 (294)
T PF04392_consen 181 LAEKVDALYLLPDNLVDS-------NFEAILQLANEAKIPVFGSSDF 220 (294)
T ss_dssp HCTT-SEEEE-S-HHHHH-------THHHHHHHCCCTT--EEESSHH
T ss_pred hhccCCEEEEECCcchHh-------HHHHHHHHHHhcCCCEEECCHH
Confidence 346789888887664332 2222777889999999986643
No 171
>PLN02214 cinnamoyl-CoA reductase
Probab=55.12 E-value=93 Score=30.93 Aligned_cols=108 Identities=20% Similarity=0.123 Sum_probs=57.7
Q ss_pred cCceEEeecChHHHHHHHH-HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhcccCCEEE
Q 016064 215 DGCTILVHGFSRVVMEVLK-MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTMDEVDMVF 288 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~-~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m~~vd~Vl 288 (396)
.+.+||..|.++-+-..|. .+.++|- +|+++...+..........+...+-.++++ .| ..+..+++.+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 4567888888877655443 3445454 555443222211111122332211134443 22 34556678888887
Q ss_pred EcceeEeecC---CeeccccHHHHHHHhhhCCCcEEEec
Q 016064 289 VGADGVVESG---GIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 289 vGAd~V~~NG---~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
--|-....+- --.|-.||..+.-+|+.+++.-+|..
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7663322110 01366799999999998887644433
No 172
>PRK06108 aspartate aminotransferase; Provisional
Probab=55.11 E-value=1.5e+02 Score=29.44 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=51.2
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-----------hHHHHhc
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-----------SAVAYTM 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-----------sav~~~m 281 (396)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+.. ..+...|+++..++. ..+...+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPGD--EVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 3445677777777766555554443343 45553 34443332 334567888776643 1222223
Q ss_pred -ccCCEEEEcceeEeecCCeeccccH-------HHHHHHhhhCCCcEEE
Q 016064 282 -DEVDMVFVGADGVVESGGIINMMGT-------YQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 -~~vd~VlvGAd~V~~NG~v~nkiGT-------~~lAl~Ak~~~vPvyV 322 (396)
+++.++++. ..-|..|+ ..++-+|+++++.+++
T Consensus 156 ~~~~~~i~l~--------~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFIN--------SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 233334331 12355664 3467778888887764
No 173
>PRK12320 hypothetical protein; Provisional
Probab=55.02 E-value=36 Score=38.07 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=59.5
Q ss_pred eEEeecChHHHHHHHH-HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE--EcchHHHHhcccCCEEEEcceeE
Q 016064 218 TILVHGFSRVVMEVLK-MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL--LIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~-~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl--I~Dsav~~~m~~vd~VlvGAd~V 294 (396)
+||..|.++-+-.-|. .+.++| .+|++++..+.. +...+++... +.|..+..++.++|.|+--|-..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 5788888776655443 344445 577777654321 1112322211 23444555667888888766432
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
..+..-.|-.||.+++-+|++.+++++.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22222368899999999999999987776644
No 174
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=55.00 E-value=1.6e+02 Score=26.38 Aligned_cols=46 Identities=7% Similarity=-0.017 Sum_probs=34.0
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
+.-|....+=.+.++.+++.|+++..|++..-+.+-+.+|.+|.-.
T Consensus 108 iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 108 ISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 4444444555677999999999999999887677777788877643
No 175
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=54.88 E-value=1.8e+02 Score=26.90 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=29.1
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
+.-|.-..+-..+++.+.+.|+++..|+-..-+.+-+.+|.+|.
T Consensus 118 iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~ 161 (192)
T PRK00414 118 ISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIR 161 (192)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 33333333345668888899999999886554555567888775
No 176
>PRK06836 aspartate aminotransferase; Provisional
Probab=54.88 E-value=1.5e+02 Score=29.92 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=54.7
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---------HHHHhc-c
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---------AVAYTM-D 282 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---------av~~~m-~ 282 (396)
+....+++|.|.+..+..++....+.| -.|++.+ |.+.+.. ..+...|+++..++.. .+...+ +
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 445567777776666555554443333 3555543 6665543 3345679888777531 222222 3
Q ss_pred cCCEEEEcceeEeecCCeeccccHHHHHHHhhh------CCCcEEE
Q 016064 283 EVDMVFVGADGVVESGGIINMMGTYQIALVAHS------MNKPVYV 322 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~------~~vPvyV 322 (396)
++.+|++. ..-...|.++...--..++-+|+. |++++++
T Consensus 168 ~~~~v~~~-~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 168 KTKAVIIN-SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 44555442 233334555544444556666776 6766654
No 177
>PRK13937 phosphoheptose isomerase; Provisional
Probab=54.82 E-value=1.7e+02 Score=26.73 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
.+.++.+.+.|+++..|+...-+.+.+.+|.+|.-
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 45588888899999999887666666777877753
No 178
>PRK10116 universal stress protein UspC; Provisional
Probab=54.78 E-value=1.3e+02 Score=25.27 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=26.9
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.++|+|++|.+.--. ..+.|+ ...-+.++.++||+|+
T Consensus 101 ~~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 101 HHFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred hCCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 489999999986422 444453 3456688999999997
No 179
>CHL00194 ycf39 Ycf39; Provisional
Probab=54.63 E-value=88 Score=30.60 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=60.5
Q ss_pred eEEeecChHHHHHHHH-HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE--cc-hHHHHhcccCCEEEEccee
Q 016064 218 TILVHGFSRVVMEVLK-MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL--ID-SAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~-~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI--~D-sav~~~m~~vd~VlvGAd~ 293 (396)
+||..|-++.+-.-|. .+.++| ++|.++--.+. . +..|...|+++... .| ..+...+..+|.|+--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~----~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLR----K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChH----H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5888898887766443 444445 46665532221 1 23444557655432 23 4566678889988864432
Q ss_pred EeecC---CeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 294 VVESG---GIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 294 V~~NG---~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
...+. .-+|..|+..+.-+|++.++.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 21111 1235678999999999999876665444
No 180
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.60 E-value=1.3e+02 Score=27.97 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=64.1
Q ss_pred HHHHhhccccCceEEeecChHHHHHHHHHHHHCCCe-eEEE---EeC-C---CC-------CchhH----HHHHHHHhCC
Q 016064 206 AMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKL-FRVL---CTE-G---RP-------DRSGL----RLANELAKLD 266 (396)
Q Consensus 206 a~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~-f~Vi---V~E-s---rP-------~~eG~----~la~~L~~~G 266 (396)
+..+.+.|.+ .+|+..|.++.--.+++.....|-. +.++ .+| + |- ..-|+ .+++.|.+.+
T Consensus 10 G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 10 GDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred CHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 3445555555 6888889988766777777777743 5444 122 1 11 01131 2355666654
Q ss_pred --CCEEEEcc------hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 267 --VPVKLLID------SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 267 --I~vtlI~D------sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
++++.+.. .....+.+++|.|+...|. ..--..+.-.|+++++|++.+.
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEE
Confidence 55555432 2244566888988766542 2223456677999999998864
No 181
>PRK05939 hypothetical protein; Provisional
Probab=54.55 E-value=1.4e+02 Score=30.75 Aligned_cols=94 Identities=18% Similarity=0.111 Sum_probs=54.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHHHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEcc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVGA 291 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvGA 291 (396)
..|++-+....+..+|....+.|. +|++.+ +.+-+ ..+...+...|++++++.- ..+...+ ++...|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 456666556666666655554454 566654 33333 2344567788999988753 2344444 34444444
Q ss_pred eeEeecCCeeccccH----HHHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMGT----YQIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiGT----~~lAl~Ak~~~vPvyV 322 (396)
+ .+-|..|. ..++-+|++++++++|
T Consensus 138 e------sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 E------TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred E------CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 23344443 3467788999988877
No 182
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=54.23 E-value=52 Score=25.03 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=33.5
Q ss_pred HHHHHHHCCC-eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc
Q 016064 231 VLKMAAQNKK-LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM 281 (396)
Q Consensus 231 ~L~~A~~~gk-~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m 281 (396)
.+.+|.+++. -.+||+.+..-...-..+.+.+.+.|+++..+++.-+..+.
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 3455556554 56688888844444567888899999999999988766654
No 183
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=53.70 E-value=1e+02 Score=30.68 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=52.6
Q ss_pred cccCceEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc-ccCCEEEEc
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m-~~vd~VlvG 290 (396)
+...++++|.|.+..+..++... ...|. +|++ + .|.+.+...+. ...|+++..+.+ ...+- .++.+
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~~--~~~g~~~~~~~~--~~~l~~~~~~~---- 151 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPGD--VVVI-P-ELAYPTYEVGA--RLAGATVVRADS--LTELGPQRPAL---- 151 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcccHHHHH--HhcCCEEEecCC--hhhCCcccceE----
Confidence 44567888988888766544333 23343 4444 4 36666555433 345887777654 11111 23333
Q ss_pred ceeEeecCCeeccccH-------HHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGT-------YQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT-------~~lAl~Ak~~~vPvyV 322 (396)
|+-+ ..-|..|+ -.++-+|+++++.+++
T Consensus 152 ---v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 152 ---IWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred ---EEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3333 34566673 3677778899987664
No 184
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=53.65 E-value=21 Score=30.23 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCEEEEcchH--HHHhc--ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 256 LRLANELAKLDVPVKLLIDSA--VAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsa--v~~~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
++++.+|.+.|.+|..+.... ...+. .++.+|++..| +.--....-..-.+-.+.+++||+++++..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 456788888888888877644 33333 67889999888 111111111222234456999999999865
No 185
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=53.53 E-value=2.2e+02 Score=27.65 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=53.2
Q ss_pred CceEEeecChHHHHHHHHHHHH------------CCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------h
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQ------------NKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------S 275 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~------------~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------s 275 (396)
...+.|.|.+....-.+..+.. .+....|++.+ +...... +.+...|+++..++. .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~--~~~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVE--KAAAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHH--HHHHHHhcCeEEeeeCCCCCcCHH
Confidence 4688888887776655554432 12233444443 3322222 222233777777651 2
Q ss_pred HHHHhccc------CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 276 AVAYTMDE------VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 276 av~~~m~~------vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+...+.+ -.++++....-...|.+ .. -..++-+|++++++++|
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~-~~--~~~i~~~~~~~~~~l~v 183 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAI-DP--LEEIADLAEKYDLWLHV 183 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCC-CC--HHHHHHHHHHhCCeEEE
Confidence 23333433 33445444444455554 22 36688889999999887
No 186
>PRK07050 cystathionine beta-lyase; Provisional
Probab=53.35 E-value=2.3e+02 Score=29.12 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=51.0
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-HH-HHHHhCCCCEEEEcc---hHHHHhcc-cCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-LA-NELAKLDVPVKLLID---SAVAYTMD-EVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-la-~~L~~~GI~vtlI~D---sav~~~m~-~vd~VlvG 290 (396)
.+++|-|.+..+..++....+.| -+|++.+ |.+.+.. +. ..+...|+.++.+.. ..+...+. +..+|++-
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le 157 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVKAG--DDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE 157 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhCCC--CEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 45555555555555554444334 3666644 4444422 33 345667998888742 34555553 33333322
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. .+.-.....=-..++-+|+++++++++
T Consensus 158 --~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 --A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred --C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 1 111112222234567788999988876
No 187
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=53.31 E-value=1.1e+02 Score=29.29 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=62.6
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||..|......+=+....+.|-+++|+-.+-.|..+ .|.+.| .++++.-.--..-+..+++|+...|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATd-- 94 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATD-- 94 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCC--
Confidence 4679999999998877666666778888888766544432 244443 2455443222233466777777655
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
++.=...++-.|++.+++|.++..
T Consensus 95 -------D~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 95 -------DEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEcCC
Confidence 222335678889999999998764
No 188
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.44 E-value=48 Score=31.57 Aligned_cols=101 Identities=23% Similarity=0.084 Sum_probs=59.9
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE--EEcc-hHHHHhcccC-CEEEEcceeE
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVK--LLID-SAVAYTMDEV-DMVFVGADGV 294 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt--lI~D-sav~~~m~~v-d~VlvGAd~V 294 (396)
||+.|.++-|-.-|.....+. ..+|+.+...+....... .++... -+.| ..+...+..+ |.|+--|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 777788877766665544422 456665554332211111 122111 1223 4555666777 8887765555
Q ss_pred eecCC---------eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 295 VESGG---------IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 295 ~~NG~---------v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
...+. -.|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 43333 589999999999999988777766554
No 189
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=52.39 E-value=1.6e+02 Score=30.39 Aligned_cols=93 Identities=24% Similarity=0.243 Sum_probs=51.9
Q ss_pred cCceEEeecChH---------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCC----------------E
Q 016064 215 DGCTILVHGFSR---------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVP----------------V 269 (396)
Q Consensus 215 dg~~ILT~~~S~---------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~----------------v 269 (396)
+..+|+..+.|+ .+...+....++ ..+.+++.= .|...-..+.+.+.+.|++ +
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 281 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAI-VPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTL 281 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEe-CCCCCHHHHHHHHHhcCceecCCccccchhhccCce
Confidence 345788888887 233333333322 356655432 1222223455555555654 3
Q ss_pred EEEcc-hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 270 KLLID-SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 270 tlI~D-sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.++.. ..+..+|..+|+||. +.||.+ .=+-.+++|++++-
T Consensus 282 ~v~~~~~~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 282 EVLLGRGAFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred EEEechHhHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 33322 235677888887654 467765 44667899999875
No 190
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=52.29 E-value=75 Score=29.74 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=43.0
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEE-eCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc--ccC
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLC-TEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM--DEV 284 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV-~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m--~~v 284 (396)
.||.-|+++....++....+.+....|.+ +-.+|...+ .....+.|||+..+.. ..+...+ -++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 46666667777777766554444455553 334454443 3445677999988652 2333334 367
Q ss_pred CEEEE-cceeEee
Q 016064 285 DMVFV-GADGVVE 296 (396)
Q Consensus 285 d~Vlv-GAd~V~~ 296 (396)
|.+++ |-..++.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 87666 4444443
No 191
>PRK12452 cardiolipin synthetase; Reviewed
Probab=52.15 E-value=93 Score=33.39 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccccCceEEe--ecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHH-----HHHHhCCCC
Q 016064 196 EISYKARKIIAMLSQDFIFDGCTILV--HGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLA-----NELAKLDVP 268 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg~~ILT--~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la-----~~L~~~GI~ 268 (396)
+.+..+.-.....|.+.| .|.| +.....+...|+.|+++|.++++++.+ +|...+...+ .+|.+.|++
T Consensus 343 ~~i~~~~l~~I~~A~~~I----~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv~ 417 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSI----WIATPYFIPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGAS 417 (509)
T ss_pred HHHHHHHHHHHHHhhhEE----EEECCccCCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCCE
Q ss_pred EEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHH
Q 016064 269 VKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQI 309 (396)
Q Consensus 269 vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~l 309 (396)
+...... ++=+..+.-||. ..-+||.++
T Consensus 418 I~~y~~~------------~lHaK~~ivD~~-~a~vGS~Nl 445 (509)
T PRK12452 418 IYSYKDG------------FMHAKIVLVDDK-IATIGTANM 445 (509)
T ss_pred EEEecCC------------CeeeeEEEECCC-EEEEeCccc
No 192
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=52.10 E-value=58 Score=28.85 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCCchhHHHHHHHHhCCCCEEEEcch--HHHHhcccCCEEEEcc
Q 016064 249 GRPDRSGLRLANELAKLDVPVKLLIDS--AVAYTMDEVDMVFVGA 291 (396)
Q Consensus 249 srP~~eG~~la~~L~~~GI~vtlI~Ds--av~~~m~~vd~VlvGA 291 (396)
+|-..-|+.|+..|.+.|..|+...-. .+...++++|.|+...
T Consensus 35 Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 35 GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 444555777777787778777776511 2455678888887653
No 193
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=52.06 E-value=17 Score=37.68 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=31.8
Q ss_pred HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 277 VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 277 v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
+-..+.++|.||.|-=++ .. ....--....+|-+|+.++|||+++|.+....
T Consensus 278 l~~~l~~aDlVITGEG~~-D~-Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERLEDADLVITGEGRL-DA-QTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHCCC-SEEEE--CEC-ST-TTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHhcCCCEEEECcccc-cc-ccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 556789999999997442 22 22222345667888999999999999876543
No 194
>PRK14361 Maf-like protein; Provisional
Probab=51.87 E-value=71 Score=29.76 Aligned_cols=75 Identities=28% Similarity=0.246 Sum_probs=48.0
Q ss_pred CCeeEEE---EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-ecCCeeccccHHHHH--HH
Q 016064 239 KKLFRVL---CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-ESGGIINMMGTYQIA--LV 312 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~NG~v~nkiGT~~lA--l~ 312 (396)
|-.|.++ +.|+.+...-..++..|++.+-. ++.. +.-+.+++|||.|. -||.++.|-.+..-| ++
T Consensus 18 g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~-------~v~~--~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA~~~L 88 (187)
T PRK14361 18 GVPFQVVVSGEAEDSTETDPARLAAELALLKAR-------AVAR--LHPDAVVIAADTVVALGGVLLAKPADEAENEAFL 88 (187)
T ss_pred CCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHH--hCCCCEEEEeCeEEEECCEEecCCCCHHHHHHHH
Confidence 8889987 45554433345667777765410 1111 12367999999977 599999999998766 34
Q ss_pred hhhCCCcEEE
Q 016064 313 AHSMNKPVYV 322 (396)
Q Consensus 313 Ak~~~vPvyV 322 (396)
-.-.|.+.-|
T Consensus 89 ~~lsG~~h~V 98 (187)
T PRK14361 89 RVLSGRTHQV 98 (187)
T ss_pred HHhCCCceEE
Confidence 4445554443
No 195
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=51.67 E-value=99 Score=29.63 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=55.3
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHH----------Hhc-cc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVA----------YTM-DE 283 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~----------~~m-~~ 283 (396)
....++|.|.+..+..++..+...| -+|++.. |...+. ...+...|+.+..++...-+ ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~~--~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVPD--PTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEcC--CCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 4467888777777777766654333 3455543 444333 34445567776666543211 111 35
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
+..|++-. .-...|.+...---..++-+|++++++++|=
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 55666543 2233444433222234456789999998873
No 196
>PRK08064 cystathionine beta-lyase; Provisional
Probab=51.44 E-value=2.1e+02 Score=29.28 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=51.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHH-HHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRL-ANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~l-a~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvG 290 (396)
..|++-+.+..+...|. +.+.|. +|++. .|.+.| ..+ ...+...|+++..+... .+...+ ++..+|++-
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~ 145 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVE 145 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 35555444555555553 454454 56664 344443 223 45567789999988642 333344 345455442
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.---..|.+. . -..++-+|++++++|+|
T Consensus 146 -~p~NptG~~~-d--l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 146 -TPSNPLLKVT-D--IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred -CCCCCCcEec-c--HHHHHHHHHHcCCEEEE
Confidence 1111223332 2 23567788999987766
No 197
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.39 E-value=2.2e+02 Score=29.65 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-H-HHHHHhCCCCEEEEcc---hHHHHhcc-cCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-L-ANELAKLDVPVKLLID---SAVAYTMD-EVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-l-a~~L~~~GI~vtlI~D---sav~~~m~-~vd~VlvG 290 (396)
..+++-+.+..+..+|....+.|. +|++.. +.+.|.. + ...+...|+.++++.- ..+...+. +...|++
T Consensus 80 ~al~~~SG~~Ai~~al~all~pGd--~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v- 154 (427)
T PRK05994 80 AALAVASGHAAQFLVFHTLLQPGD--EFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI- 154 (427)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 355555555556655555544443 555543 4444432 2 3446778999888752 23444443 4444554
Q ss_pred ceeEee-cCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVE-SGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+.+.. .|.+. . -..++-+|++++++++|
T Consensus 155 -esp~NptG~v~-d--l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 -ESIANPGGTVT-D--IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred -ECCCCCCCeec-C--HHHHHHHHHHcCCEEEE
Confidence 23322 23333 2 24677889999998887
No 198
>PRK06234 methionine gamma-lyase; Provisional
Probab=51.31 E-value=2.1e+02 Score=29.36 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=52.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvG 290 (396)
+.|+|-|.+..+..++....+.|. +|++.. |.+.+. .+ ...+...|+++.++... .+...+ ++..+|++.
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 466666666666655655444454 566554 544332 22 34567789999887632 333334 344444432
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhC--CCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSM--NKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~--~vPvyV 322 (396)
.---..|.+.. --.++-+|+++ +++++|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112343332 34677778886 666654
No 199
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=51.26 E-value=2.3e+02 Score=28.33 Aligned_cols=99 Identities=20% Similarity=0.131 Sum_probs=48.3
Q ss_pred ceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHH--hCCCCEEEEcc--------hHHHHhc-ccC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELA--KLDVPVKLLID--------SAVAYTM-DEV 284 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~--~~GI~vtlI~D--------sav~~~m-~~v 284 (396)
.+++|.+.+..++..+..+... ++.-+|++.+ |.+.+...+..+. ..|.++..++- ..+...+ +++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~--~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVPD--SAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEcC--ccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4555544443444444444332 2334566543 3333323222222 33566665542 2233333 344
Q ss_pred CEEEEcceeEeecCCeeccccH-HHHHHHhhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGT-YQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT-~~lAl~Ak~~~vPvyV 322 (396)
..|++-. .-..|.+ ..- ..++-+|+++++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4455543 2334444 244 5677889999998887
No 200
>PRK06225 aspartate aminotransferase; Provisional
Probab=51.25 E-value=1.4e+02 Score=29.91 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=52.8
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-h----------HHHHhcc
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-S----------AVAYTMD 282 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-s----------av~~~m~ 282 (396)
....+++|.|.+..+..++......|. +|++.+ |.+... ...+...|..+..++. . .+...+.
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLII--DNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcch--HHHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445688888888876666655543343 455444 554332 2344567777776652 1 1222222
Q ss_pred -cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..|++- .--...|.++++-=-..++-.|+++++++++
T Consensus 156 ~~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 156 ENTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CCceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEE
Confidence 33232222 1111223333322234466778999998876
No 201
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=51.14 E-value=1.4e+02 Score=29.87 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHHHhhhCCCcEEE
Q 016064 307 YQIALVAHSMNKPVYV 322 (396)
Q Consensus 307 ~~lAl~Ak~~~vPvyV 322 (396)
..++-+|++|++++++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4577889999987766
No 202
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=51.07 E-value=1.2e+02 Score=30.20 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=55.6
Q ss_pred cccCceEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc-ccCCEEEEc
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m-~~vd~VlvG 290 (396)
+...++++|.|.+..+..++... .+.|. .|++ + .|.+-+.... +...|.++..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 45567888998888776655443 23343 4544 3 5666666543 34568777777541 1111 23333333
Q ss_pred ceeEeecCCeeccccHH-------HHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTY-------QIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~-------~lAl~Ak~~~vPvyV 322 (396)
+ ..-|..|+. .++-+|+++++++++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 2 366777753 477788999998875
No 203
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=50.79 E-value=75 Score=33.23 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=59.2
Q ss_pred cCceEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEccee
Q 016064 215 DGCTILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~ 293 (396)
...+||..|.++-|-.-|.. ..++| .+|++++.........+. .+.. .-.+.++.....-..+.++|.||--|-.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~ 194 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACP 194 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECcee
Confidence 45789999998877665544 33434 577776643211111111 1111 1234444322222234578877776632
Q ss_pred EeecCC--------eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 294 VVESGG--------IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 294 V~~NG~--------v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
...... -.|-.||..+.-+|+.+++.|+.+..+
T Consensus 195 ~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 195 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred ccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 211111 167889999999999999877665443
No 204
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=50.53 E-value=2.6e+02 Score=27.76 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=49.6
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---------HH-HHhccc
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---------AV-AYTMDE 283 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---------av-~~~m~~ 283 (396)
....+++|.|-+..+..++. +...| .|++. .|.+.+.. ..+...|.++..++.. .+ ..+-++
T Consensus 71 ~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 142 (356)
T PRK08056 71 PASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYR--RALQQVGCEIRRYSLREADGWQLTDAILEALTPD 142 (356)
T ss_pred ChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHH--HHHHHcCCeEEEEecccccCCCccHHHHHhccCC
Confidence 44456777666665555544 44434 34443 36654433 2345668877776421 11 112245
Q ss_pred CCEEEEcceeEeecCCeeccccH-------HHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGT-------YQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT-------~~lAl~Ak~~~vPvyV 322 (396)
+.+|++. ..-|..|. ..++-.|+++++++++
T Consensus 143 ~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 143 LDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 5555552 23455553 4466678888887765
No 205
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=50.45 E-value=1.7e+02 Score=29.55 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=51.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc-ccCC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM-DEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m-~~vd 285 (396)
.+++|.|-+..+..++......|....|++. .|.+.+.... ....|+++..++.. .+...+ +++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4667777777766666555544544344443 5777665543 34567766665421 111111 3444
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
.+++- .-=-+-|.++.+-=-..++-.|+++++.++
T Consensus 168 ~i~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 168 LLFVC-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred EEEEe-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 45442 111111333333334667778888887554
No 206
>PLN02187 rooty/superroot1
Probab=50.34 E-value=2.1e+02 Score=29.95 Aligned_cols=103 Identities=13% Similarity=0.068 Sum_probs=54.8
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m- 281 (396)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+... .+...|.++..++. ..+-..+
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 456678888887777666665444334 3455443 66555433 23456777765532 1222222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..++++.-=. -..|.++++-=-..++-.|+++++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 233344433211 2334444444445677788888877764
No 207
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=50.17 E-value=1.1e+02 Score=29.06 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=41.9
Q ss_pred eEEeecChHHHHHHHHHHHHCCC-eeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEEc----------chHHHHhcc--c
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKK-LFRVL-CTEGRPDRSGLRLANELAKLDVPVKLLI----------DSAVAYTMD--E 283 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI~----------Dsav~~~m~--~ 283 (396)
.||.-|+.+..+.++ .+.++|. +.+|. |.=++|...+.+.|+ +.|||+..+. +..+...+. +
T Consensus 3 ~vl~Sg~Gsn~~al~-~~~~~~~l~~~i~~visn~~~~~~~~~A~---~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIH-DACLDGRVNGDVVVVVTNKPGCGGAEYAR---ENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHH-HHHHcCCCCeEEEEEEEeCCCChHHHHHH---HhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 455555555555544 5555554 44544 555678887766554 4599997654 233434443 5
Q ss_pred CCEEEE-cceeE
Q 016064 284 VDMVFV-GADGV 294 (396)
Q Consensus 284 vd~Vlv-GAd~V 294 (396)
+|.+++ |--.+
T Consensus 79 ~Dliv~agy~~i 90 (207)
T PLN02331 79 VDFVLLAGYLKL 90 (207)
T ss_pred CCEEEEeCcchh
Confidence 887776 44443
No 208
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=49.97 E-value=2.5e+02 Score=28.62 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE---EeC-C---CCC-----chh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL---CTE-G---RPD-----RSG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi---V~E-s---rP~-----~eG----~~la~~L~~~G- 266 (396)
++..+.+.+.+ .+||..|-.+.=-.+++.....| +++.++ .+| | |-. .-| ..+++.|.+.+
T Consensus 18 ~g~~~q~~L~~-~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 18 IGQQGQQSLFD-AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred cCHHHHHHHhC-CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 44455555554 68888888776555555555556 345555 222 2 111 112 23466777653
Q ss_pred -CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 -VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 -I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+. ...+..+++.+|.|+.+.|.+ ..-+.+.-+|+.+++|++..
T Consensus 97 ~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred CcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 5555442 223345678999999998753 23456788899999998764
No 209
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=49.69 E-value=1.9e+02 Score=29.18 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=58.4
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHh----------CCCCEEEEc--c-hHHHHhc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAK----------LDVPVKLLI--D-SAVAYTM 281 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~----------~GI~vtlI~--D-sav~~~m 281 (396)
+.+++|.|.|..++..++.+...|+ -+|+..|. .+.|..+ +..+.. .+.++..++ | ..+-..+
T Consensus 104 ~~v~~~~sgsea~~~al~~~~~~g~-~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (398)
T PRK03244 104 GRVFFCNSGAEANEAAFKLARLTGR-TKIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV 180 (398)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHCC-CeEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh
Confidence 3688888888889988887776565 35665654 3444433 222211 122344443 3 2333444
Q ss_pred -ccCCEEEEcceeEeec-CCeecccc-HHHHHHHhhhCCCcEEE
Q 016064 282 -DEVDMVFVGADGVVES-GGIINMMG-TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 -~~vd~VlvGAd~V~~N-G~v~nkiG-T~~lAl~Ak~~~vPvyV 322 (396)
+++..|++ +.+... |.+....+ =..+.-+|+++++.+++
T Consensus 181 ~~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 181 DDDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred cCCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45555665 445444 44444555 44677889999998876
No 210
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=49.67 E-value=74 Score=31.91 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=57.9
Q ss_pred hhccc--cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEE
Q 016064 210 QDFIF--DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMV 287 (396)
Q Consensus 210 ~~~I~--dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~V 287 (396)
.+++. +..+|..+|.......-++....-...-+|+|. +|-...-.+++.++.+.|+++....|. ..+++++|.|
T Consensus 120 a~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav~~aDiV 196 (325)
T TIGR02371 120 AKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDP--REAVEGCDIL 196 (325)
T ss_pred HHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCH--HHHhccCCEE
Confidence 34452 346777777766555444322221222344444 443333557788888889888776554 3456899999
Q ss_pred EEcc---eeE-----eecCCeeccccHHH
Q 016064 288 FVGA---DGV-----VESGGIINMMGTYQ 308 (396)
Q Consensus 288 lvGA---d~V-----~~NG~v~nkiGT~~ 308 (396)
+... +-+ +..|..++-+|++.
T Consensus 197 itaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 197 VTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 9865 333 35788888888753
No 211
>PRK07324 transaminase; Validated
Probab=49.36 E-value=1.5e+02 Score=29.80 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=57.5
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-c
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM-D 282 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m-~ 282 (396)
....+++|.|.+..+..++......|. +|++. .|...+.. ..+...|.++..++- .++...+ +
T Consensus 79 ~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~ 152 (373)
T PRK07324 79 KPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVRP 152 (373)
T ss_pred ChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCCC
Confidence 445678888887776666655444343 45553 46554433 234456877776652 1233333 3
Q ss_pred cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..|++. .-=-..|.++++.--..++-+|+++++.+++
T Consensus 153 ~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 153 NTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44444433 2223446666655557788889999986655
No 212
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=49.31 E-value=1.1e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=34.9
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
+.-++...+-.+.++.+++.|+++..|+++.-..+-+.+|.+|.-.
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3334444556677889999999999999887777778888887644
No 213
>PRK04425 Maf-like protein; Reviewed
Probab=49.21 E-value=1.4e+02 Score=27.98 Aligned_cols=89 Identities=18% Similarity=0.057 Sum_probs=54.0
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCC-chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-ec
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPD-RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-ES 297 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~-~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~N 297 (396)
|.|..=..+|..+ |-.|+|+ +.|+... ..-..++.+|++.+.. ++.. ..-+.+++|||.|. -|
T Consensus 11 S~SprR~elL~~~---g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~--~~~~~lvI~aDTvV~~~ 78 (196)
T PRK04425 11 TSSVFRREQMERL---GIAFQAASPDFDETPMLGESAPQTALRLAEGKAR-------SLTG--RFPEALIVGADQVAWCD 78 (196)
T ss_pred CCCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHh--hCCCCEEEEeCeEEEEC
Confidence 3343333455443 8889988 4454322 2345677777765421 1111 12367999999977 59
Q ss_pred CCeeccccHHHHH--HHhhhCCCcEEEe
Q 016064 298 GGIINMMGTYQIA--LVAHSMNKPVYVA 323 (396)
Q Consensus 298 G~v~nkiGT~~lA--l~Ak~~~vPvyV~ 323 (396)
|.++.|-.+..-| ++-+-.|....|.
T Consensus 79 g~ilgKP~~~eeA~~~L~~lsg~~h~v~ 106 (196)
T PRK04425 79 GRQWGKPMNLANAQKMLMHLSGREIEFY 106 (196)
T ss_pred CEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 9999999998766 4445566655443
No 214
>PRK14012 cysteine desulfurase; Provisional
Probab=49.04 E-value=3e+02 Score=27.85 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred ceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhH-HHHHHHHhCCCCEEEEcc--------hHHHHhcccCC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGL-RLANELAKLDVPVKLLID--------SAVAYTMDEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~-~la~~L~~~GI~vtlI~D--------sav~~~m~~vd 285 (396)
.+++|-|.+..+..++..+.+ .++.-+|++.+ +.+.+. ..++.+...|+++..+.. ..+...+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 466665555554444433321 12223566543 233222 224556667988887742 12333343323
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++++-...=...| .+..+ -.++-+|++++++++|
T Consensus 146 ~lv~~~~~~n~tG-~~~~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIG-VIQDI--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCcc-chhhH--HHHHHHHHHcCCEEEE
Confidence 3333222212223 33333 4677889999999887
No 215
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=49.02 E-value=2.1e+02 Score=28.81 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=54.8
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---------HHHHhcc---
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---------AVAYTMD--- 282 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---------av~~~m~--- 282 (396)
+..+++|-|.+..+..++......|. +|++. .|.+.|... .+...|+++..++.. .+...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEP--IVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 35678887777776666655443333 45544 366666543 334568877776532 1222222
Q ss_pred -cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..+++- .---..|.+++..--..++-+|+++++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 24444442 0001224444444445677788999988876
No 216
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.77 E-value=2.5e+02 Score=27.45 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=64.0
Q ss_pred ceEEeecC---hHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE-EcchH----HHHhccc-CCEE
Q 016064 217 CTILVHGF---SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL-LIDSA----VAYTMDE-VDMV 287 (396)
Q Consensus 217 ~~ILT~~~---S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl-I~Dsa----v~~~m~~-vd~V 287 (396)
-++|||.| +.-+++|+..+.+.|-. -|+|. .-|..|...+...+.+.|++... ++-++ +..+.+. -+++
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-Gviip-DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIP-DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEEC-CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 47888886 44688999999987742 34554 45667888999999999997665 55444 2222222 2333
Q ss_pred E-EcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 288 F-VGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 288 l-vGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
- ++--++.....-...-....+..+.+..++|++|-.
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGf 207 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGF 207 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEc
Confidence 2 232222221112233344466677777799998843
No 217
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=48.76 E-value=63 Score=28.98 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=15.9
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCC
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGR 250 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Esr 250 (396)
|-||-....+..+|....++...++|+|++..
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~ 34 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDA 34 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECC
Confidence 34444444555555555443344566555543
No 218
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=48.75 E-value=1e+02 Score=31.59 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCEEEEcch--------HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhh----CCCcEEEe
Q 016064 256 LRLANELAKLDVPVKLLIDS--------AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHS----MNKPVYVA 323 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Ds--------av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~----~~vPvyV~ 323 (396)
.+.++.|.+.||+|++|.-. .+....++.+.|+ +++++....-.|+...+.++.. ...|+.-+
T Consensus 244 l~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rl 318 (356)
T PLN02683 244 LKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERI 318 (356)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEe
Confidence 34455666667777766522 2334456677764 4556666666899999888887 35677765
Q ss_pred c
Q 016064 324 A 324 (396)
Q Consensus 324 a 324 (396)
+
T Consensus 319 g 319 (356)
T PLN02683 319 A 319 (356)
T ss_pred c
Confidence 5
No 219
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=48.65 E-value=1.1e+02 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=23.6
Q ss_pred eccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 301 INMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 301 ~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
+|-.||..++-+|+.++++|+.+...+=|
T Consensus 80 ~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 80 LNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 68889999999999999987766655544
No 220
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=48.62 E-value=2.3e+02 Score=28.36 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=54.5
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhC----------CCCEEEEcch--------
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKL----------DVPVKLLIDS-------- 275 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~----------GI~vtlI~Ds-------- 275 (396)
...+++|.|.|..+...++.+..-..+-+|++.+ |.+.|... +..+... +.++..++..
T Consensus 96 ~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~--~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (413)
T cd00610 96 LDKVFFVNSGTEAVEAALKLARAYTGRKKIISFE--GAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAE 173 (413)
T ss_pred CCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEEC--CCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhh
Confidence 3457777777777888777664322233566665 33444333 2222211 2345555433
Q ss_pred ------HHHHhccc----CCEEEEcceeEeecCC-eecccc-HHHHHHHhhhCCCcEEE
Q 016064 276 ------AVAYTMDE----VDMVFVGADGVVESGG-IINMMG-TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 276 ------av~~~m~~----vd~VlvGAd~V~~NG~-v~nkiG-T~~lAl~Ak~~~vPvyV 322 (396)
.+-..+.+ +-.|++ +.+...+| +....+ -..++-+|+++++++++
T Consensus 174 ~~~d~~~l~~~l~~~~~~~~~vi~--~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 174 LADDLEALEEALEEHPEEVAAVIV--EPIQGEGGVIVPPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEE--ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333433 223333 44666633 343333 56677889999998875
No 221
>PRK08912 hypothetical protein; Provisional
Probab=48.60 E-value=2.6e+02 Score=28.02 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=50.3
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---------hHHHHhc-ccCCE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---------SAVAYTM-DEVDM 286 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---------sav~~~m-~~vd~ 286 (396)
++++|.|.+..+..++......|. +|++.+ |.+.+... .+...|.++..++- ..+-..+ +++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~gd--~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPGD--EVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC--EEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 788898888877655554433343 555543 66555443 34566777665542 2222222 34444
Q ss_pred EEEcceeEeecCCeeccccHH-------HHHHHhhhCCCcEEE
Q 016064 287 VFVGADGVVESGGIINMMGTY-------QIALVAHSMNKPVYV 322 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~-------~lAl~Ak~~~vPvyV 322 (396)
|++. ..-|..|+. .++-+|+++++.+++
T Consensus 163 v~l~--------~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 163 VLLN--------NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred EEEe--------CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 4432 234555543 366778888876553
No 222
>PRK07681 aspartate aminotransferase; Provisional
Probab=48.49 E-value=1.7e+02 Score=29.63 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=53.0
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc-ccC
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM-DEV 284 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m-~~v 284 (396)
..+++|.|.+..+..++....+.| -+|++. .|.+.+... .+...|+++..++.. .+...+ +++
T Consensus 94 ~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 167 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYET--GIQMAGATSYYMPLKKENDFLPDLELIPEEIADKA 167 (399)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHH--HHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc
Confidence 467777777776655554443334 355544 366655543 244568877766521 111111 344
Q ss_pred CEEEEc-ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 285 DMVFVG-ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvG-Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..|++. .+- +.|.++++---..++-+|+++++.+++
T Consensus 168 k~v~l~~P~N--PTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 168 KMMILNFPGN--PVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred eEEEEeCCCC--CcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 454442 111 225555544456778888999986653
No 223
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=48.47 E-value=43 Score=37.33 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=35.3
Q ss_pred ecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh--HHHHHHHHhCCCCEEEEc
Q 016064 222 HGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG--LRLANELAKLDVPVKLLI 273 (396)
Q Consensus 222 ~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG--~~la~~L~~~GI~vtlI~ 273 (396)
.+..+-+...|..|+++||.++|+|-=-.=..|+ ...++.|.++|+.|.|-.
T Consensus 367 ~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 367 TSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred ecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 3433455677888888999999886522222233 355899999999998833
No 224
>PRK09191 two-component response regulator; Provisional
Probab=48.45 E-value=1.5e+02 Score=27.50 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHC---CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE-EcchH--HHHhc-ccCCEEEEcceeEeecC
Q 016064 226 RVVMEVLKMAAQN---KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL-LIDSA--VAYTM-DEVDMVFVGADGVVESG 298 (396)
Q Consensus 226 ~~V~~~L~~A~~~---gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl-I~Dsa--v~~~m-~~vd~VlvGAd~V~~NG 298 (396)
++|..-+.+|.+. ....+|++++..|.. ...+...|...|+.+.. ..+.. ...+. ...|.|++..+ +.+|
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~-~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~ 195 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPII-AMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG 195 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHH-HHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC
Confidence 4566666555543 334567777766543 23456777788888773 44433 22222 35888888764 2221
Q ss_pred CeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 299 GIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 299 ~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
.-|.-.+..+.+..++|++++++
T Consensus 196 ----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 12333344444444899999876
No 225
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=48.40 E-value=2.7e+02 Score=27.06 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=46.6
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhccc-----CCEE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMDE-----VDMV 287 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~~-----vd~V 287 (396)
.+.|++.+.+.....++..+.+.|. +|++. .|.+.+... .+...|+++..+.. ..+-..+.. .-+|
T Consensus 77 ~~~i~~~~G~~~~~~~l~~~~~~gd--~v~~~--~~~~~~~~~--~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v 150 (360)
T TIGR00858 77 EAALLFSSGYLANVGVISALVGKGD--LILSD--ALNHASLID--GCRLSGARVRRYRHNDVEHLERLLEKNRGERRKLI 150 (360)
T ss_pred CCEEEECchHHHHHHHHHHhCCCCC--EEEEE--ccccHHHHH--HHHhcCCceEEecCCCHHHHHHHHHHcccCCCeEE
Confidence 3455555556555555544433232 44443 344433332 23456777776642 223333432 2233
Q ss_pred EEcceeEeecCCeecccc----HHHHHHHhhhCCCcEEE
Q 016064 288 FVGADGVVESGGIINMMG----TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiG----T~~lAl~Ak~~~vPvyV 322 (396)
+++ .+.|..| -..++-+|+++++++++
T Consensus 151 ~~~--------~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 151 VTD--------GVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred EEe--------CCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 332 2334444 35577788999987766
No 226
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=48.26 E-value=15 Score=37.54 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=31.0
Q ss_pred cChHHHHHHHHHHHHCCCeeEEEEeCCCCC-chh--HHHHHHHHhCCCCEEEEcc
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVLCTEGRPD-RSG--LRLANELAKLDVPVKLLID 274 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~-~eG--~~la~~L~~~GI~vtlI~D 274 (396)
+.-|-+...|.+|+++||...|+| |=+-. -|- ...|++|.++|+.|.|-..
T Consensus 47 a~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~~ 100 (352)
T PF13090_consen 47 ASNSPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGVP 100 (352)
T ss_dssp -TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--T
T ss_pred CCCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCCC
Confidence 334446667778888999988874 54332 222 2459999999999988543
No 227
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=48.20 E-value=78 Score=30.00 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=60.3
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||.+|.+++..+=++...+.|-+..|+-.|..| ++.....+.+| ..+-+.--......++.|++..|-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~-----el~~~~~~~~i--~~~~~~~~~~~~~~~~lviaAt~d- 82 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEP-----ELKALIEEGKI--KWIEREFDAEDLDDAFLVIAATDD- 82 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccH-----HHHHHHHhcCc--chhhcccChhhhcCceEEEEeCCC-
Confidence 5789999999998777666666778888888776633 33233333332 222222222223447777766543
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
.----.++-+|+.+++||.|+-..
T Consensus 83 --------~~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 83 --------EELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred --------HHHHHHHHHHHHHhCCceeccCCc
Confidence 223356889999999999997543
No 228
>PRK02948 cysteine desulfurase; Provisional
Probab=48.12 E-value=2.9e+02 Score=27.48 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHC--CCeeEEEEeCCCCCchh-HHHHHHHHhCCCCEEEEcch
Q 016064 199 YKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQN--KKLFRVLCTEGRPDRSG-LRLANELAKLDVPVKLLIDS 275 (396)
Q Consensus 199 ~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~--gk~f~ViV~EsrP~~eG-~~la~~L~~~GI~vtlI~Ds 275 (396)
..+++.|++..- ..+..+++|-|-+.....++..+... +..-+|++.+ +..-+ ....+.+...|+++..++..
T Consensus 46 ~~~r~~la~~~g--~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~ 121 (381)
T PRK02948 46 QVCRKTFAEMIG--GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVD 121 (381)
T ss_pred HHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeC
Confidence 445556655321 13345666655555544444443321 2223455433 22222 23345566789888887621
Q ss_pred --------HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 276 --------AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 276 --------av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+...++.-.++++=...-...|.+.. + ..++-+|++++++|+|
T Consensus 122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 122 KSGLIRLVDLERAITPDTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 122233222222222222223343333 2 2477788889988776
No 229
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=47.98 E-value=1.7e+02 Score=29.99 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=60.9
Q ss_pred CceEEeecChHHHHHHHHHHHHCC------CeeEEEEeCCCCCchhHHH-HHHHHhC--------CC--CEEEEc--c-h
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNK------KLFRVLCTEGRPDRSGLRL-ANELAKL--------DV--PVKLLI--D-S 275 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~g------k~f~ViV~EsrP~~eG~~l-a~~L~~~--------GI--~vtlI~--D-s 275 (396)
+.+.++-|.|..++..|+.|..-. .+-+|+..+.. +.|.-+ +..+... ++ ++..++ | .
T Consensus 97 ~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~--yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T PRK12381 97 DRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNA--FHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN 174 (406)
T ss_pred CeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCC--cCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence 578888888999999998875431 23456665543 455544 3233221 11 122232 2 2
Q ss_pred HHHHhc-ccCCEEEEcceeEeecCCeec--cccHHHHHHHhhhCCCcEEE
Q 016064 276 AVAYTM-DEVDMVFVGADGVVESGGIIN--MMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 276 av~~~m-~~vd~VlvGAd~V~~NG~v~n--kiGT~~lAl~Ak~~~vPvyV 322 (396)
++...+ +++-.|++ +-|..+|+++- +-==..+.-+|++|++.+++
T Consensus 175 ~l~~~l~~~~aavii--EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~ 222 (406)
T PRK12381 175 SASALIDDQTCAVIV--EPIQGEGGVIPADKAFLQGLRELCDRHNALLIF 222 (406)
T ss_pred HHHHhccCCeeEEEE--eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344444 35556666 67899988764 33334567789999998864
No 230
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=47.86 E-value=35 Score=28.12 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=54.2
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||..|.+....+-++...+.|-+..|+-.+. ...+ .. +++.... ....+..+++|+...+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~--i~~~~~~-~~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GL--IQLIRRE-FEEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TS--CEEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hH--HHHHhhh-HHHHHhhheEEEecCCC-
Confidence 47789999999988888888877787777765544 1111 12 2233332 22346677777765432
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
..-.-.++..|++.++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2334568888999999999864
No 231
>PRK08361 aspartate aminotransferase; Provisional
Probab=47.84 E-value=2.1e+02 Score=28.74 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=51.9
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m- 281 (396)
+....+++|.|.+..+..++....+.|. +|++.+ |.+.+.. ..+...|+++..++. ..+-..+
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g~--~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEGD--EVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 3445688887777666655554433343 566554 5554432 334456777766541 1122222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++..|++. .---..|.++..-=-..++-+|+++++.+++
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 334444432 1112234444432224566778888886654
No 232
>PRK06460 hypothetical protein; Provisional
Probab=47.78 E-value=2.8e+02 Score=28.20 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=31.8
Q ss_pred HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEcceeEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 260 NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVGADGVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 260 ~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvGAd~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..+...|+++..+.. ..+..+. ++...|++ +... ..|.+... -.++-+|++++++++|
T Consensus 103 ~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l--~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 103 DYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV--ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE--ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 445566777777642 1222222 34556665 2222 24544443 2477788999987765
No 233
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=47.04 E-value=3.3e+02 Score=27.75 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcccc-CceEEeecChHHHHHHHHHHH--HCCCeeEEEEeCCCCCchhH-HHHHHH-HhCCCCEEEE
Q 016064 198 SYKARKIIAMLSQDFIFD-GCTILVHGFSRVVMEVLKMAA--QNKKLFRVLCTEGRPDRSGL-RLANEL-AKLDVPVKLL 272 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~d-g~~ILT~~~S~~V~~~L~~A~--~~gk~f~ViV~EsrP~~eG~-~la~~L-~~~GI~vtlI 272 (396)
...+++.|+++--. .+ .++++|.|-+..+..++.... .-++.-+|++.+. ...+. ...+.+ ...|+++..+
T Consensus 78 ~~~~r~~la~~~~~--~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~a~~~g~~v~~v 153 (424)
T PLN02855 78 YELARKKVAAFINA--STSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVA--EHHSNIVPWQLVAQKTGAVLKFV 153 (424)
T ss_pred HHHHHHHHHHHcCC--CCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCC--ccHHHHHHHHHHHHHcCCEEEEE
Confidence 34455666653211 22 457777665555554443210 1122235665542 22222 222333 4568888877
Q ss_pred cc--------hHHHHhc-ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 273 ID--------SAVAYTM-DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 273 ~D--------sav~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+. ..+...+ ++.++|++. ..-...|.+.. -..++-+|++++++|+|
T Consensus 154 ~~~~~~~~~~~~l~~~i~~~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~viv 208 (424)
T PLN02855 154 GLTPDEVLDVEQLKELLSEKTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLV 208 (424)
T ss_pred ecCCCCCcCHHHHHHHhccCceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 52 1233333 344445443 22233454443 23577788999987776
No 234
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=47.03 E-value=87 Score=29.12 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=57.6
Q ss_pred cCceEEeecChHHHHHHH-HHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhc-------
Q 016064 215 DGCTILVHGFSRVVMEVL-KMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTM------- 281 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L-~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m------- 281 (396)
.|.+||..|.++-+-..+ +.+.++| .+|+++..+ ..+...+...+.+.|.++..+ .| ..+..++
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~-~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRD-PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCC-HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 467888888777654444 4444445 577776543 334455666777667655443 22 2333333
Q ss_pred ccCCEEEEcceeEeecCCe-------------eccccHHHHHHHhhhC----CCcEEEeccc
Q 016064 282 DEVDMVFVGADGVVESGGI-------------INMMGTYQIALVAHSM----NKPVYVAAES 326 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v-------------~nkiGT~~lAl~Ak~~----~vPvyV~aes 326 (396)
+.+|.||..|-. ...+.. +|-.|++.+.-++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGM-QFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCC-CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 346766665422 111111 4556777777666532 4455555443
No 235
>PRK05967 cystathionine beta-lyase; Provisional
Probab=46.92 E-value=2.4e+02 Score=29.30 Aligned_cols=98 Identities=23% Similarity=0.154 Sum_probs=57.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-HH-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-LA-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-la-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.|+|-|.+..+..++....+.|. +|++. .|.+.|.. +. ..+...|++|+++.. .++...+ ++..+|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 477887766666666655555554 56665 45665644 34 456778999999854 3355555 344444443
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.=+ | -+....==..++-+|++++++++|
T Consensus 157 sPs---N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 APG---S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCC---C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 211 1 122222234677788999987766
No 236
>PRK07683 aminotransferase A; Validated
Probab=46.82 E-value=2.5e+02 Score=28.23 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=51.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---------HHHHhcccCCEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---------AVAYTMDEVDMV 287 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---------av~~~m~~vd~V 287 (396)
++++|.|.+..+..++....+.|. +|++ ..|.+.+...+ +...|.++.+++.. .+...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPI--IRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHH--HHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 688888877776666555444443 4554 35666554443 33468888777532 122223222232
Q ss_pred EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 288 FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++=..---..|.++.+.==..++-+|+++++++++
T Consensus 165 i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 22111111223333332235577788888887664
No 237
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.72 E-value=1.4e+02 Score=30.53 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCEEEEc-------ch-HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhC----CCcEEEec
Q 016064 257 RLANELAKLDVPVKLLI-------DS-AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSM----NKPVYVAA 324 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~-------Ds-av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~----~vPvyV~a 324 (396)
+.++.|.+.||++++|. |. .+...+++.+.|++ ++++....-.|+...+.++.+. .+|+.-++
T Consensus 250 eAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~ 324 (355)
T PTZ00182 250 KAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVC 324 (355)
T ss_pred HHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeC
Confidence 33444555555555543 21 34445567777754 5666666778888888888775 67887766
Q ss_pred cccccc
Q 016064 325 ESYKFA 330 (396)
Q Consensus 325 es~Kf~ 330 (396)
-.-.|.
T Consensus 325 ~~d~~~ 330 (355)
T PTZ00182 325 GADTPF 330 (355)
T ss_pred CCCccC
Confidence 544444
No 238
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=46.50 E-value=33 Score=33.43 Aligned_cols=98 Identities=23% Similarity=0.204 Sum_probs=59.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGV 294 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V 294 (396)
++||..|.|+.+-..|.++.++ +.++|+.+ +|+...- ....++..++. +-|.||--|-..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl----------------~d~~~~~~~~~~~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDL----------------TDPEAVAKLLEAFKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-T----------------TSHHHHHHHHHHH--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCC----------------CCHHHHHHHHHHhCCCeEeccceee
Confidence 3689999999998888887764 56788877 5442211 01122333332 345555543111
Q ss_pred e--------ecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 295 V--------ESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 295 ~--------~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
- ..-..+|-.|+..+|-+|+.++++++-++..+=|+..
T Consensus 63 ~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 63 NVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp -HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred cHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 0 0123477899999999999999999998888878654
No 239
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=46.31 E-value=2.3e+02 Score=27.75 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=53.1
Q ss_pred CceEEeecChHH---HHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhcccCCEEEEc
Q 016064 216 GCTILVHGFSRV---VMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTMDEVDMVFVG 290 (396)
Q Consensus 216 g~~ILT~~~S~~---V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m~~vd~VlvG 290 (396)
..+|+.+|.+.. ....+.+|.++ .+...+++.-++... ..+.+.+. .|+.|.+..- ..+..+|..+|.+++.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346788887653 23344344332 222233433333222 34445555 7887554432 3577889999999863
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
+ |+ ...+-|-.+|+|+++...
T Consensus 260 ~-------------g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A-------------GA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C-------------CH-HHHHHHHHhCCCEEEecC
Confidence 2 22 334466788999998764
No 240
>PRK08618 ornithine cyclodeaminase; Validated
Probab=46.03 E-value=1.7e+02 Score=29.17 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=53.8
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEcchHHHHhcccCCEEEEcce-
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLIDSAVAYTMDEVDMVFVGAD- 292 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~Dsav~~~m~~vd~VlvGAd- 292 (396)
+..+|+.+|........+.........-+|.|. +|-.....+++.++.+ .|+++....|. ..+++++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSA--DEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCH--HHHHhcCCEEEEccCC
Confidence 567899999888776666443332222234455 4433446778888865 47877766552 344588999887431
Q ss_pred ------eEeecCCeeccccHH
Q 016064 293 ------GVVESGGIINMMGTY 307 (396)
Q Consensus 293 ------~V~~NG~v~nkiGT~ 307 (396)
.-+..|..++-+|++
T Consensus 203 ~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 203 KTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCcchHHhcCCCcEEEecCCC
Confidence 122455666666654
No 241
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=45.94 E-value=2.4e+02 Score=28.93 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHHHHHH-hCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLANELA-KLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la~~L~-~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.++|.|.+..+..++....+.|. +|++.+ |.+.| ..+...+. ..|+++.++.. ..+...+ ++..+|++.
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~GD--~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPGD--LLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 466666666666555554443343 565553 55655 44545544 34568877631 2333334 455555552
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.---..|.+.. -..++-+|++++++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11112233332 24677788889887765
No 242
>PRK00032 Maf-like protein; Reviewed
Probab=45.90 E-value=1.1e+02 Score=28.66 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=52.5
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCC-chhHHHHHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEe-
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPD-RSGLRLANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVV- 295 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~-~eG~~la~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~- 295 (396)
|.|..=..+|..+ |-.|+++ +.|+... ..-..++.+|++.+ +-.+.. .-+.+++|||.|.
T Consensus 8 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~~vI~aDTvV~ 74 (190)
T PRK00032 8 SGSPRRRELLTQL---GVPFEVLVPGIEEQRQPGESAQQYVERLARDK----------AQAGVALAPQDLPVLGADTIVV 74 (190)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhcCCCCEEEEeCeEEE
Confidence 3343333444433 8889988 4454322 23456777777643 111112 2367999999976
Q ss_pred ecCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 296 ESGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 296 ~NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
-||.++.|-.+..-| ++-+-.|.+..|
T Consensus 75 ~~g~IlgKP~~~eeA~~~L~~lsG~~h~v 103 (190)
T PRK00032 75 LDGEVLEKPRDAADAAAMLRALSGRTHQV 103 (190)
T ss_pred ECCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 599999999998766 344445555444
No 243
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=45.77 E-value=2.8e+02 Score=27.98 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=51.1
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcch---HHHHhc-ccCCEEEEcc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLIDS---AVAYTM-DEVDMVFVGA 291 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~Ds---av~~~m-~~vd~VlvGA 291 (396)
.|++-|.+..+..++ .+.+.|. +|++.+ |.+.|. .+ ...+...|+++..+... .+...+ ++..+|++-
T Consensus 70 ~~~~~sG~~ai~~~~-~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQLVM-SLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHHHH-HHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 466666555554433 4444453 566543 445443 33 44566789999887632 333334 345555542
Q ss_pred eeEeecCCeeccccH----HHHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMGT----YQIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiGT----~~lAl~Ak~~~vPvyV 322 (396)
..-|..|+ ..++-+|++++++++|
T Consensus 144 -------~P~NP~~~~~dl~~I~~la~~~g~~lIv 171 (366)
T PRK08247 144 -------TPTNPLMQETDIAAIAKIAKKHGLLLIV 171 (366)
T ss_pred -------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 11244443 4477788999987765
No 244
>PRK07550 hypothetical protein; Provisional
Probab=45.74 E-value=2.3e+02 Score=28.39 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=53.2
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m- 281 (396)
+....+++|.|-+..+..++....+.|. +|++ ++ |.+-+... .+...|+++..+... .+-..+
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv-~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAGD--EVIL-PL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCCC--EEEE-cC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 4456678887766665544444333343 4544 43 66655433 345678877665531 122222
Q ss_pred ccCCEEEEc-ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVG-ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvG-Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++...|++- .. -..|.+++.-=-..++-.|+++++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 233343332 11 1224444443355677888999987765
No 245
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=45.72 E-value=1.3e+02 Score=32.16 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=65.2
Q ss_pred HHHhhccccCceEEeecC--hHH----HHHHHHHHHH---CC--CeeEEEE-eCCCC-----------------CchhHH
Q 016064 207 MLSQDFIFDGCTILVHGF--SRV----VMEVLKMAAQ---NK--KLFRVLC-TEGRP-----------------DRSGLR 257 (396)
Q Consensus 207 ~~a~~~I~dg~~ILT~~~--S~~----V~~~L~~A~~---~g--k~f~ViV-~EsrP-----------------~~eG~~ 257 (396)
+.|+.+|+||++|..-+. .+. +.++.+++.+ .| +.++++. ....| ++-|.
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp- 84 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDP- 84 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCH-
Confidence 456778999999988765 232 2223333322 11 3556553 21111 11111
Q ss_pred HHHHHHhCC-CCEEEEcchHHHHhcc-----cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 258 LANELAKLD-VPVKLLIDSAVAYTMD-----EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 258 la~~L~~~G-I~vtlI~Dsav~~~m~-----~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
..+++.+.| +.+.-..-+.+...++ ++|.+++-+...-++|.+.=-........+++. .+.|+|-+
T Consensus 85 ~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~a-Ak~VIvEV 156 (485)
T TIGR03458 85 TLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLEL-ADKVIVEV 156 (485)
T ss_pred HHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHh-CCEEEEEE
Confidence 235555666 5666666677777662 689999999888888877544443333333333 44555544
No 246
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.70 E-value=1.3e+02 Score=31.94 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=53.5
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEccee
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~ 293 (396)
..|.+|+.+|...+=+..++.++..| .+|++.|.+|. +. ..|.+.|+.+....+ . ...+..+|.|+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~~-~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp-- 78 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----AL-RPHAERGVATVSTSD-A-VQQIADYALVVTSP-- 78 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----HH-HHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC--
Confidence 45788899888766444554455556 47888887653 22 346777885532222 1 22346677776643
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++-- +.+.-..|++.++|++-
T Consensus 79 -----Gi~~---~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----GFRP---TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----CCCC---CCHHHHHHHHCCCcEee
Confidence 2221 34566777888888874
No 247
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=45.68 E-value=2.5e+02 Score=28.67 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=51.6
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHHHHH-HhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLANEL-AKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la~~L-~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
.+++|-|.+..+..++....+.|. +|++ ..|.+.| ..+...+ ...|+++.++.. ..+...+ ++..+|++.
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 456666666655555555444443 4544 3356654 4444454 444688887632 2333444 344445442
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.---..|.+.. -..++-+|++++++++|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11123344443 24677788889876655
No 248
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=45.67 E-value=2.9e+02 Score=26.76 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=48.9
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhcc---cCCE
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTMD---EVDM 286 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m~---~vd~ 286 (396)
+++|-|.|..+..++......|. +|++.+. +.+ |..+.......|+++..+.. ..+-..+. ++..
T Consensus 53 i~~~~~gt~~l~~~~~~~~~~~~--~vi~~~~-~~~-~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~ 128 (355)
T TIGR03301 53 VLLQGSGTFAVEATIGSLVPRDG--KLLVLIN-GAY-GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITH 128 (355)
T ss_pred EEEeCCcHHHHHHHHHhccCCCC--eEEEECC-Cch-hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceE
Confidence 34555666666666655443322 4554432 222 33344445567988887752 22333332 2222
Q ss_pred EEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 287 VFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
|++ ...=..+|.+ .. -..++-+|++++++++|=
T Consensus 129 v~~-~~~~~~~G~~-~~--~~~i~~l~~~~~~~livD 161 (355)
T TIGR03301 129 VAT-VHHETTTGIL-NP--LEAIAKVARSHGAVLIVD 161 (355)
T ss_pred EEE-EecCCcccch-hH--HHHHHHHHHHcCCEEEEE
Confidence 321 1111123333 23 246778889999887773
No 249
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=45.55 E-value=1.3e+02 Score=25.74 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=56.8
Q ss_pred EEeecChHHHHHHHHHHHHCCC-eeEEE----EeCC---C-----CCchh----HHHHHHHHhCC--CCEEEEcch----
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKK-LFRVL----CTEG---R-----PDRSG----LRLANELAKLD--VPVKLLIDS---- 275 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk-~f~Vi----V~Es---r-----P~~eG----~~la~~L~~~G--I~vtlI~Ds---- 275 (396)
|+..|-++.=-.+++.....|. ++.++ |.++ | +..-| ..+++.|.+.+ ++++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~ 81 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISED 81 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChh
Confidence 5666766655555666566664 34444 1111 1 11113 23355555543 555555432
Q ss_pred HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 276 AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 276 av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
.....+++.|.|+.+.|.. --...+.-.|+.+++|++.+.-
T Consensus 82 ~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 82 NLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2235678899998887752 2366788889999999998763
No 250
>PRK00148 Maf-like protein; Reviewed
Probab=45.37 E-value=1e+02 Score=28.81 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCeeEEE---EeCCCCCc-hhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEee-cCCeeccccHHHHH--
Q 016064 239 KKLFRVL---CTEGRPDR-SGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVVE-SGGIINMMGTYQIA-- 310 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~-eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~~-NG~v~nkiGT~~lA-- 310 (396)
|-.|+++ +-|+.+.. .-..++.+|++.+ +-.+.+ .-+.+++|||.|.. ||.++.|-.+..=|
T Consensus 20 g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~vI~aDTvV~~~g~Il~KP~~~eeA~~ 89 (194)
T PRK00148 20 GIPPLVVVSHVDEDAIAASSPSELVQALARAK----------AEAVAENAPDAVVLGCDSMLLIDGRLLGKPHTPEEAIE 89 (194)
T ss_pred CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCEEEEeCcEEEECCEEecCCCCHHHHHH
Confidence 8889988 44544332 2455677776543 111122 24679999999765 99999999998766
Q ss_pred HHhhhCCCcEEE
Q 016064 311 LVAHSMNKPVYV 322 (396)
Q Consensus 311 l~Ak~~~vPvyV 322 (396)
++-+-.|.+..|
T Consensus 90 ~L~~lsG~~h~v 101 (194)
T PRK00148 90 RWQQMSGRTGEL 101 (194)
T ss_pred HHHHhCCCCcEE
Confidence 444445654444
No 251
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=45.27 E-value=39 Score=29.36 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred EEeCCCCC-----chhHHHHHHHHhCCCCE-EE-EcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCC
Q 016064 245 LCTEGRPD-----RSGLRLANELAKLDVPV-KL-LIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMN 317 (396)
Q Consensus 245 iV~EsrP~-----~eG~~la~~L~~~GI~v-tl-I~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~ 317 (396)
++.-+.|+ .+|.++|+.+.+.|.++ .+ ..+.+|....+.. .+.+. .+-=+.....++..++
T Consensus 5 iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~~ 72 (128)
T PRK00207 5 IAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEHG 72 (128)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhcC
Confidence 45566777 56788899998888763 22 3334444443322 11111 1112355667788899
Q ss_pred CcEEEeccccc
Q 016064 318 KPVYVAAESYK 328 (396)
Q Consensus 318 vPvyV~aes~K 328 (396)
+|+|||..+.+
T Consensus 73 v~l~vC~~~a~ 83 (128)
T PRK00207 73 VALNVCVAAAL 83 (128)
T ss_pred CEEEEeHHHHH
Confidence 99999987654
No 252
>PRK15005 universal stress protein F; Provisional
Probab=45.16 E-value=74 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=24.0
Q ss_pred ccCCEEEEcceeEeecCCeec-cccHHHHHHHhhhCCCcEEEe
Q 016064 282 DEVDMVFVGADGVVESGGIIN-MMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~n-kiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.++|+|++|+.. . ++.. -.|+-. .-+.++..+||+|+
T Consensus 106 ~~~DLIV~Gs~~---~-~~~~~llGS~a-~~vl~~a~cpVlvV 143 (144)
T PRK15005 106 IPADMIIIASHR---P-DITTYLLGSNA-AAVVRHAECSVLVV 143 (144)
T ss_pred cCCCEEEEeCCC---C-CchheeecchH-HHHHHhCCCCEEEe
Confidence 378999999863 2 3332 246643 44467788999886
No 253
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=45.08 E-value=2.2e+02 Score=27.50 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=46.3
Q ss_pred ccccCceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCC----chhHHHHHHHHhC-CCCEEE-----EcchHHH-H
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPD----RSGLRLANELAKL-DVPVKL-----LIDSAVA-Y 279 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~----~eG~~la~~L~~~-GI~vtl-----I~Dsav~-~ 279 (396)
+|++|+ ++-+|+++|+..+....... .+..+|+-+-+... .+.-.++..|++. |-++.+ +.++.-. .
T Consensus 49 ~l~~~~-~iGv~wG~Tl~~~~~~l~~~~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~g~~~~~l~aP~~~~s~~~~~ 127 (255)
T PF04198_consen 49 LLKDGD-VIGVGWGRTLYAVANHLPPKSLPNVTVVPLIGGVGNSNSYQANEIARRLAEKLGGKYYFLPAPAFVDSPELRD 127 (255)
T ss_dssp H--TTE-EEEE-TSHHHHHHHHTS--SSSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHHTSEEE---SBSB-SSHHHHH
T ss_pred hCCCCC-EEEEcchHHHHHHHHhcCccCCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHhCCcEEEEeCCccCCCHHHHH
Confidence 667777 66679999999988876553 45567764433222 4455666666542 433333 3233222 1
Q ss_pred h-c------------ccCCEEEEcceeEee
Q 016064 280 T-M------------DEVDMVFVGADGVVE 296 (396)
Q Consensus 280 ~-m------------~~vd~VlvGAd~V~~ 296 (396)
. + +++|.+|+|.-.+..
T Consensus 128 ~l~~~~~i~~~l~~~~~~dial~giG~~~~ 157 (255)
T PF04198_consen 128 ALLAEPSIREVLDLARKADIALVGIGSPSS 157 (255)
T ss_dssp HHHTSHHHHHHHHHHCT-SEEEEEEEEHHH
T ss_pred HHHhChHHHHHHHHHHhCCEEEEecCCCCC
Confidence 1 1 789999999866666
No 254
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=44.96 E-value=2.2e+02 Score=28.16 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=58.8
Q ss_pred cCceEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-c----hHHHHhcccCCEEE
Q 016064 215 DGCTILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-D----SAVAYTMDEVDMVF 288 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-D----sav~~~m~~vd~Vl 288 (396)
.+.+||..|.++-+-.-|.+ ..++| .+|+++...+ .....+...+.. +-.++++. | ..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 46788988988876654444 33444 5677654332 223333333432 33344432 2 34555677889888
Q ss_pred EcceeEeecC-----Ce-----ec-----cccHHHHHHHhhhCC-CcEEEeccc
Q 016064 289 VGADGVVESG-----GI-----IN-----MMGTYQIALVAHSMN-KPVYVAAES 326 (396)
Q Consensus 289 vGAd~V~~NG-----~v-----~n-----kiGT~~lAl~Ak~~~-vPvyV~aes 326 (396)
--|-..-.+. .. .| -.||..+.-+|+.++ +.-+|...|
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 7764321111 00 12 268999888887664 555554444
No 255
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=44.92 E-value=1.2e+02 Score=28.53 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=48.6
Q ss_pred EEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchH-----HHHhcccCCEEEEc-ceeEeecCCeeccccH-HHHHHHhhh
Q 016064 243 RVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSA-----VAYTMDEVDMVFVG-ADGVVESGGIINMMGT-YQIALVAHS 315 (396)
Q Consensus 243 ~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa-----v~~~m~~vd~VlvG-Ad~V~~NG~v~nkiGT-~~lAl~Ak~ 315 (396)
+|+|.+..+.+.+ .+...|.+.|+.+.++.-.. ....+.+.|.+|++ -. |+. .+.+. ..+.--|..
T Consensus 2 ~ilv~d~~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp-----~~~-~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 2 RILVVDNYDSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP-----GTP-ERAGASIDMVRACAA 74 (214)
T ss_pred eEEEEECCCcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC-----CCh-hhcchHHHHHHHHHh
Confidence 6788888876555 46788999999998877543 22235678888773 21 221 22232 234444556
Q ss_pred CCCcEEEeccc
Q 016064 316 MNKPVYVAAES 326 (396)
Q Consensus 316 ~~vPvyV~aes 326 (396)
.++|++-+|=-
T Consensus 75 ~~~PiLGIC~G 85 (214)
T PRK07765 75 AGTPLLGVCLG 85 (214)
T ss_pred CCCCEEEEccC
Confidence 78999987743
No 256
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=44.74 E-value=2.2e+02 Score=26.34 Aligned_cols=110 Identities=20% Similarity=0.269 Sum_probs=65.4
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-CCCCch--------h----HHHHHHHHhC--
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-GRPDRS--------G----LRLANELAKL-- 265 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-srP~~e--------G----~~la~~L~~~-- 265 (396)
++..+++.|.+ .+|+..|-.+.--.+++.+...|- ++.++ .+| +.=..| | ..+++.|.+.
T Consensus 11 ~g~~~q~kl~~-~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 11 IGEEGQQRLLN-SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCHHHHHHhcC-CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 34444555544 688888988876667777676674 45554 111 110000 2 2345666654
Q ss_pred CCCEEEEcc----hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 266 DVPVKLLID----SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 266 GI~vtlI~D----sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.++++.+.. ..+..+++++|.||...|..- --..+.-.|+.+++|++...
T Consensus 90 ~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 90 DIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355554432 234456789999988876532 12457778899999998755
No 257
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=44.65 E-value=1e+02 Score=29.07 Aligned_cols=94 Identities=27% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccccCceEEe-ecChHHHHHHHHHHHHCCCeeEEEEeCCCCCc------hhHHHHHHHHhCC-CCEEEEc
Q 016064 202 RKIIAMLSQDFIFDGCTILV-HGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDR------SGLRLANELAKLD-VPVKLLI 273 (396)
Q Consensus 202 ~~~Ia~~a~~~I~dg~~ILT-~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~------eG~~la~~L~~~G-I~vtlI~ 273 (396)
++.|+.++++.|.||++|-. +|-...+..+|.+ ++.+.+. +|+--.. .|.... .|...| +++++.+
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~lGiGiP~~va~~l~~----~~~l~l~-~E~G~~g~~p~p~~~~~~~-~l~~~g~~~~~~~~ 76 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIGIPTLVANYLPE----GIEVFLQ-SENGILGMGPAPEPGEEDP-DLINAGKQPVTLLP 76 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEeecHHHHHHHHHhc----CCeEEEE-EeCceecCccCCCCCCcCH-HHHhCCCCceeecc
Confidence 67899999999999986653 4433334444422 4544443 4532211 011111 344443 3433333
Q ss_pred -----chH-HHHhc--ccCCEEEEcceeEeecCCee
Q 016064 274 -----DSA-VAYTM--DEVDMVFVGADGVVESGGII 301 (396)
Q Consensus 274 -----Dsa-v~~~m--~~vd~VlvGAd~V~~NG~v~ 301 (396)
|+. ...++ ..+|..++||==|-..|.+-
T Consensus 77 g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 77 GASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred CcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 222 22222 56888899988777777654
No 258
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=44.64 E-value=1.9e+02 Score=26.81 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=62.5
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-CCCCc--------hh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-GRPDR--------SG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-srP~~--------eG----~~la~~L~~~G- 266 (396)
++..+.+.|.+ .+|+..|.++.-..+++.....|- ++.++ .+| +.-.. -| ..+++.|.+.+
T Consensus 11 ~G~e~Q~~L~~-s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp 89 (197)
T cd01492 11 WGLEAQKRLRS-ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP 89 (197)
T ss_pred hCHHHHHHHHh-CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC
Confidence 34445555554 577778888876777777777784 35544 111 11111 12 23466677665
Q ss_pred -CCEEEEcc---hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 267 -VPVKLLID---SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 267 -I~vtlI~D---sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+.++.+.. ...-.+++++|.|+...|.. ---..+.-.|+++++|++.+.
T Consensus 90 ~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~---------~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 90 RVKVSVDTDDISEKPEEFFSQFDVVVATELSR---------AELVKINELCRKLGVKFYATG 142 (197)
T ss_pred CCEEEEEecCccccHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 33333321 11234568889888765431 123456678899999996644
No 259
>PRK00078 Maf-like protein; Reviewed
Probab=44.47 E-value=1.1e+02 Score=28.55 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHCCCeeEEE---EeCCCCC--chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-ec
Q 016064 224 FSRVVMEVLKMAAQNKKLFRVL---CTEGRPD--RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-ES 297 (396)
Q Consensus 224 ~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~--~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~N 297 (396)
.|..=..+|+.+ |-.|+|+ +-|+.+. ..-..++.+|++.+-. +++.-+..-+.+++|||.|. -|
T Consensus 8 ~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~-------~v~~~~~~~~~lvI~aDTvV~~~ 77 (192)
T PRK00078 8 ASERRQELLKRI---LEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKAR-------SVSKKLDQESSIVIGCDTIVAFN 77 (192)
T ss_pred CCHHHHHHHHhC---CCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhcCCCCCEEEEeCeEEEEC
Confidence 333333455443 8899988 4455422 2346678887764410 12221212346999999977 59
Q ss_pred CCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 298 GGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 298 G~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
|.++.|-.+..=| ++-+-.|....|
T Consensus 78 g~ilgKP~~~eeA~~~L~~lsG~~h~V 104 (192)
T PRK00078 78 GKVLGKPKDEEDAFEMLKALSGNEHEV 104 (192)
T ss_pred CEEeCCCCCHHHHHHHHHHHCCCcEEE
Confidence 9999999998766 444555655544
No 260
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=44.39 E-value=2.2e+02 Score=25.58 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=59.1
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCC--CCchhHHHHHHHHhCCCCEEEEc-c----hHHHHhc-------ccC
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGR--PDRSGLRLANELAKLDVPVKLLI-D----SAVAYTM-------DEV 284 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Esr--P~~eG~~la~~L~~~GI~vtlI~-D----sav~~~m-------~~v 284 (396)
++|=|..+.-..+.+...+++ .-+|+++-.+ |..+..++.++|.+.|..|.++. | .++..++ +.+
T Consensus 4 litGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i 82 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPI 82 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-E
T ss_pred EEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCc
Confidence 344344444444555555555 3456655544 45566788999999999999875 3 2344444 356
Q ss_pred CEEEEcceeEeecCCeecc-------------ccHHHHHHHhhhCCCcEEEecccc
Q 016064 285 DMVFVGADGVVESGGIINM-------------MGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nk-------------iGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+-||-+|- +..++.+.++ .|+..+.-+.......|+|+..|.
T Consensus 83 ~gVih~ag-~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSi 137 (181)
T PF08659_consen 83 DGVIHAAG-VLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSI 137 (181)
T ss_dssp EEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEH
T ss_pred ceeeeeee-eecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECCh
Confidence 67777664 4566766663 356666666666788888876553
No 261
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=44.37 E-value=2.7e+02 Score=28.52 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=49.2
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-H-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEcce
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-A-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVGAD 292 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvGAd 292 (396)
+++.+.+..+...+....+.|. +|++.+ |.+.|... . ..+...|++++.+.. ..+...+ ++...|++. .
T Consensus 84 ~~~~sG~~Ai~~~l~~~l~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~le-s 158 (398)
T PRK07504 84 RATASGMAAVTAAILCQVKAGD--HVVAAR--ALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLE-S 158 (398)
T ss_pred eEecCHHHHHHHHHHHHhCCCC--EEEEcC--CchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE-C
Confidence 3444444444444443333343 566543 55655543 2 234567888887742 2333334 344444432 1
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-.-..|.+.. -..++-+|++++++++|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 1222344443 35677788999988776
No 262
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=44.28 E-value=1.3e+02 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHhCCCCEEE--EcchHHHHhc--ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 260 NELAKLDVPVKL--LIDSAVAYTM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 260 ~~L~~~GI~vtl--I~Dsav~~~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+.+.+.|+++.+ ...+.+...+ ...|.+++|.+.-+.- ..+--.+..+++||.+.-
T Consensus 23 ~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~---------~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 23 EYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYF---------KQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred HHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHH---------HHHHHHhhhcCCCEEEeC
Confidence 445567777665 3334444433 4689999997654321 113334556899998854
No 263
>PRK10537 voltage-gated potassium channel; Provisional
Probab=44.25 E-value=2.9e+02 Score=28.65 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=55.7
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc-----ccCCEEEEc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM-----DEVDMVFVG 290 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m-----~~vd~VlvG 290 (396)
.+.|+..|+++.-..+.+...++|..+.| .|... .++..+.|.++..- |.+=...+ ++++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvV--Id~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTV--IVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEE--EECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 56788889998878777777666654443 34321 13344567776443 33322333 577777765
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCC--cEEEecccc
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNK--PVYVAAESY 327 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~v--PvyV~aes~ 327 (396)
.+ +..-+..+++.||+.+. ++++.+...
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 43 24455678899998764 455555443
No 264
>PRK11263 cardiolipin synthase 2; Provisional
Probab=44.23 E-value=76 Score=33.14 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHCCCeeEEEEeC-CCCCchhHHHHHHHHhCCCCEEEEcc
Q 016064 225 SRVVMEVLKMAAQNKKLFRVLCTE-GRPDRSGLRLANELAKLDVPVKLLID 274 (396)
Q Consensus 225 S~~V~~~L~~A~~~gk~f~ViV~E-srP~~eG~~la~~L~~~GI~vtlI~D 274 (396)
+..+...|.+|+++|.+++|++.. +.+ .....+.++|.+.||+|.+...
T Consensus 47 g~~l~~aL~~aa~rGV~Vril~D~~gs~-~~~~~~~~~L~~aGv~v~~~~p 96 (411)
T PRK11263 47 GKQLHAALLAAAQRGVKVEVLVDGYGSP-DLSDEFVNELTAAGVRFRYFDP 96 (411)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCC-CCCHHHHHHHHHCCeEEEEeCC
Confidence 456788888888889888887643 222 2356778999999999986643
No 265
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=44.12 E-value=2.2e+02 Score=27.53 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=51.4
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHH-HHHhCCCCEEEEcc-------hHHHHhcc---
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLAN-ELAKLDVPVKLLID-------SAVAYTMD--- 282 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~-~L~~~GI~vtlI~D-------sav~~~m~--- 282 (396)
.+.+.++|.|.|.....++.... ++.-+|++.+ |...+...+. ...-.|+++..++. ..+...+.
T Consensus 46 g~~~~~~~~~gt~a~~~~~~~l~--~~gd~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~ 121 (338)
T cd06502 46 GKEAALFVPSGTAANQLALAAHT--QPGGSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRD 121 (338)
T ss_pred CCCeEEEecCchHHHHHHHHHhc--CCCCeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccC
Confidence 35578888777765554554433 3334566554 3322211111 11126877766642 23333433
Q ss_pred -----cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -----EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -----~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+..+|++- .....|+++...--..++-+|++++++++|
T Consensus 122 ~~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 122 DIHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CCcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 23334432 222235555333334577788889988876
No 266
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=44.02 E-value=1.6e+02 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=26.4
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.++|+|++|+..- |.+-...-+...--++++..+||+|+
T Consensus 101 ~~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 101 HNADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TTCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred ccceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 6899999999882 22332333444455567888999986
No 267
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=44.01 E-value=81 Score=28.91 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecC-CeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESG-GIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG-~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
..+++.|++.|++++++.+.. -+++.|.|+++--.....- ......|....-.-+...++|++-+|--+-
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 12 RSVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 466899999999999988643 2567888888531100000 001123444444444557999998774433
No 268
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=43.86 E-value=1.4e+02 Score=27.48 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=26.8
Q ss_pred cccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 281 MDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 281 m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
.++-|.+|+ |..+| +.--+..++-.||++|+|++.++..
T Consensus 109 ~~~~Dv~I~----iS~SG---~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 109 GREGDVLLG----ISTSG---NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356677765 33344 2334567788899999999998854
No 269
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=43.80 E-value=1.7e+02 Score=28.35 Aligned_cols=91 Identities=21% Similarity=0.201 Sum_probs=48.3
Q ss_pred CceEEeecChHHHH---HHHHHHHHC--CCeeEE-EEeCCCCCchhHHHHHHHHhCCCC-EEEEcchHHHHhcccCCEEE
Q 016064 216 GCTILVHGFSRVVM---EVLKMAAQN--KKLFRV-LCTEGRPDRSGLRLANELAKLDVP-VKLLIDSAVAYTMDEVDMVF 288 (396)
Q Consensus 216 g~~ILT~~~S~~V~---~~L~~A~~~--gk~f~V-iV~EsrP~~eG~~la~~L~~~GI~-vtlI~Dsav~~~m~~vd~Vl 288 (396)
..+|+..|.+.-.. ..+..|.+. .+..++ ++....+. ..+-+.+.+.|+. +......-+..+|..+|.++
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~---~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v 255 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDL---EKVKNVYQELGIEAIVTFIDENMAAAYAAADLVI 255 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchH---HHHHHHHhhCCceEEecCcccCHHHHHHhCCEEE
Confidence 34788887654422 233334321 122333 33332222 3444555666763 22222325778899999888
Q ss_pred EcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 289 VGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 289 vGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.- .|+ ...+=|-..|+|++++
T Consensus 256 ~~-------------~g~-~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 256 SR-------------AGA-STVAELAAAGVPAILI 276 (348)
T ss_pred EC-------------CCh-hHHHHHHHcCCCEEEe
Confidence 52 232 2444677789999986
No 270
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=43.76 E-value=1.2e+02 Score=28.07 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=45.1
Q ss_pred EEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccc-cHHHHHHHhhhCCCcEE
Q 016064 243 RVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMM-GTYQIALVAHSMNKPVY 321 (396)
Q Consensus 243 ~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nki-GT~~lAl~Ak~~~vPvy 321 (396)
+|.|++-.-.+. ..+++.|.+.|.++.++.+. .-+.++|.++++--... +...... +......-+.+.++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 455554332222 57789999999998888653 23468888887531000 0011111 11222233446789999
Q ss_pred Eecccccc
Q 016064 322 VAAESYKF 329 (396)
Q Consensus 322 V~aes~Kf 329 (396)
-+|--+-+
T Consensus 76 gIC~G~q~ 83 (200)
T PRK13143 76 GICLGMQL 83 (200)
T ss_pred EECHHHHH
Confidence 98865544
No 271
>PRK05957 aspartate aminotransferase; Provisional
Probab=43.71 E-value=3.1e+02 Score=27.63 Aligned_cols=93 Identities=8% Similarity=0.067 Sum_probs=51.7
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch--------HHHHhc-ccCCE
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS--------AVAYTM-DEVDM 286 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds--------av~~~m-~~vd~ 286 (396)
..+++|.|.+..+..++....+.|. +|++. .|...+... .+...|+++.+++.. .+-..+ ++...
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEM--AITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHH--HHHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 4577777776666555544433343 45543 476655543 234678887776432 222223 23444
Q ss_pred EEEcceeEeecCCeeccccH-------HHHHHHhhhCCCcEEE
Q 016064 287 VFVGADGVVESGGIINMMGT-------YQIALVAHSMNKPVYV 322 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT-------~~lAl~Ak~~~vPvyV 322 (396)
|++- ..-|..|+ ..++-+|+++++.+++
T Consensus 164 v~~~--------~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVTI--------SPNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEe--------CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 4332 13466664 4477788999987765
No 272
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=43.70 E-value=1.3e+02 Score=29.05 Aligned_cols=96 Identities=24% Similarity=0.242 Sum_probs=59.2
Q ss_pred hhccccCceE---EeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCE
Q 016064 210 QDFIFDGCTI---LVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDM 286 (396)
Q Consensus 210 ~~~I~dg~~I---LT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~ 286 (396)
.++++.++.| --+|+=.-+.+.|+ -+|.|++-|-.|..-- . -..+|.....+++++|.
T Consensus 107 l~li~~~d~IkmI~~fg~m~p~v~~l~------ek~~v~~~er~~~~pk---------r----~t~~d~~e~~iLP~~Dv 167 (250)
T COG2014 107 LDLIQRDDKIKMIAEFGNMPPVVRTLK------EKFEVYVFERNPKLPK---------R----GTLSDTLEYQILPEVDV 167 (250)
T ss_pred HHHHcCCCceeEEEecCCCChHHHHhh------hheEEEEeccCccCcc---------c----ccccchhhhhhcccccE
Confidence 3466777644 44555333444443 3799999988776421 1 24677778888999999
Q ss_pred EEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 287 VFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
+++.|.++.. ||.-.-+.=....+=|+.+.++--..|.
T Consensus 168 ii~SaStlvN--------~T~d~~Ld~ak~ak~vvl~GPTa~l~pe 205 (250)
T COG2014 168 IIASASTLVN--------GTLDMILDRAKKAKLVVLTGPTAQLLPE 205 (250)
T ss_pred EEEechhhhc--------CcHHHHHhhhccCcEEEEeCCCcccchh
Confidence 9999877543 4555544333444455556666555543
No 273
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.59 E-value=45 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=20.1
Q ss_pred cccCceEEeecChH---HHHHHHHHHHHCCC
Q 016064 213 IFDGCTILVHGFSR---VVMEVLKMAAQNKK 240 (396)
Q Consensus 213 I~dg~~ILT~~~S~---~V~~~L~~A~~~gk 240 (396)
+++||+++.+|.|+ .+.+.++.|+++|-
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~ 131 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGM 131 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 78999999998766 58888889987663
No 274
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=43.58 E-value=1.4e+02 Score=31.69 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=48.4
Q ss_pred chhHHHHHHHHhCCCCEEEEcchH--------HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhh----CCCcE
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSA--------VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHS----MNKPV 320 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsa--------v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~----~~vPv 320 (396)
.+..+.++.|.+.||++++|.... +-...++...|+ ++++|....-.|+...+.++.+ ...|+
T Consensus 353 ~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv 427 (464)
T PRK11892 353 TYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPV 427 (464)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCe
Confidence 334455677777888888876433 334456777764 4667777777999999999886 36788
Q ss_pred EEecccccc
Q 016064 321 YVAAESYKF 329 (396)
Q Consensus 321 yV~aes~Kf 329 (396)
.-++-...|
T Consensus 428 ~ri~~~d~~ 436 (464)
T PRK11892 428 LRVTGKDVP 436 (464)
T ss_pred EEeccCCcc
Confidence 776644333
No 275
>PRK04694 Maf-like protein; Reviewed
Probab=43.54 E-value=1.1e+02 Score=28.66 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=47.3
Q ss_pred CCeeEEE---EeCCCCCch-hHHHHHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeEee-cCCeeccccHHHHH-
Q 016064 239 KKLFRVL---CTEGRPDRS-GLRLANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGVVE-SGGIINMMGTYQIA- 310 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~e-G~~la~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V~~-NG~v~nkiGT~~lA- 310 (396)
|-.|.|+ +.|+....+ -..++.+|+..+-. ++..-+. .-+.+++|||.|.. ||.++.|-.+..=|
T Consensus 19 g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aDTvv~~~g~ilgKP~~~~eA~ 91 (190)
T PRK04694 19 DVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSDTEVVLGERVFGKPVDVDDAI 91 (190)
T ss_pred CCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCeEEEECCEEecCCCCHHHHH
Confidence 8889988 345433322 35667777654311 1111111 24689999999774 99999999998766
Q ss_pred -HHhhhCCCcEEE
Q 016064 311 -LVAHSMNKPVYV 322 (396)
Q Consensus 311 -l~Ak~~~vPvyV 322 (396)
++-+-.|....|
T Consensus 92 ~~L~~lsG~~h~V 104 (190)
T PRK04694 92 AMLRALSGRTHQV 104 (190)
T ss_pred HHHHHhCCCceEE
Confidence 444445554433
No 276
>PRK06348 aspartate aminotransferase; Provisional
Probab=43.50 E-value=2.3e+02 Score=28.49 Aligned_cols=103 Identities=9% Similarity=0.042 Sum_probs=53.3
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc---c-------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI---D-------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~---D-------sav~~~m- 281 (396)
+....+++|.|.+..+..++......|. +|++. .|.+.+...+- ...|..+..++ + ..+-..+
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQI--EMVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHH--HHcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4555688888887776666655544443 55553 37766655433 33465555543 1 2232333
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+...|++. .-=-+.|.+++.-==..++-+|+++++.+++
T Consensus 161 ~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 161 SKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 345555542 1111223333333235567778888876654
No 277
>PRK06141 ornithine cyclodeaminase; Validated
Probab=43.46 E-value=1.8e+02 Score=28.93 Aligned_cols=91 Identities=19% Similarity=0.287 Sum_probs=55.3
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcce-
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD- 292 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd- 292 (396)
.+..+|+.+|....-...++.......-.+|+|. +|......+++.++.+.|+++....+ ....+.++|.|+....
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~-~Rs~~~a~~~a~~~~~~g~~~~~~~~--~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVW-GRDPAKAEALAAELRAQGFDAEVVTD--LEAAVRQADIISCATLS 199 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEE-cCCHHHHHHHHHHHHhcCCceEEeCC--HHHHHhcCCEEEEeeCC
Confidence 3567999999877666555433332223445555 45445567888888877877665433 3345688998866332
Q ss_pred --eE-----eecCCeeccccHH
Q 016064 293 --GV-----VESGGIINMMGTY 307 (396)
Q Consensus 293 --~V-----~~NG~v~nkiGT~ 307 (396)
-| +..|.+++-+|++
T Consensus 200 ~~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 200 TEPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCCEecHHHcCCCCEEEeeCCC
Confidence 22 2456677777765
No 278
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=43.42 E-value=68 Score=29.58 Aligned_cols=81 Identities=21% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCeeEEE---EeCCCCCch-hHHHHHHHHhCCCCEEEEcchHHHHhccc-C-CEEEEcceeEe-ecCCee
Q 016064 229 MEVLKMAAQNKKLFRVL---CTEGRPDRS-GLRLANELAKLDVPVKLLIDSAVAYTMDE-V-DMVFVGADGVV-ESGGII 301 (396)
Q Consensus 229 ~~~L~~A~~~gk~f~Vi---V~EsrP~~e-G~~la~~L~~~GI~vtlI~Dsav~~~m~~-v-d~VlvGAd~V~-~NG~v~ 301 (396)
.++|+.+ |-.|+++ +.|+.+..+ -..++..|+..+ +-.+.++ - +.+++|||.|. -||.++
T Consensus 11 ~elL~~~---g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~liI~aDtvv~~~g~il 77 (180)
T cd00555 11 RELLEQL---GIPFEVVPSDIDETPIKGESPEDYVLRLAEAK----------AEAVAARLPPDALVIGADTVVVLDGRIL 77 (180)
T ss_pred HHHHHhC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCCEEEEecEEEEECCEEE
Confidence 3345443 7889988 556554433 456677777654 1122222 2 67999999976 599999
Q ss_pred ccccHHHHHH--HhhhCCCcEEE
Q 016064 302 NMMGTYQIAL--VAHSMNKPVYV 322 (396)
Q Consensus 302 nkiGT~~lAl--~Ak~~~vPvyV 322 (396)
.|-.+..-|. +-.-.|.+.-|
T Consensus 78 ~KP~~~~eA~~~L~~lsg~~h~v 100 (180)
T cd00555 78 GKPKDREEAREMLKRLSGRTHEV 100 (180)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEE
Confidence 9999987763 33445554443
No 279
>PRK13566 anthranilate synthase; Provisional
Probab=43.26 E-value=88 Score=35.21 Aligned_cols=80 Identities=16% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc--ccCCEEEE-cceeEeecCCeeccccHHHHHHHhhh
Q 016064 239 KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM--DEVDMVFV-GADGVVESGGIINMMGTYQIALVAHS 315 (396)
Q Consensus 239 gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m--~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~Ak~ 315 (396)
|+..+|.|++-...+ -..+++.|.+.|.+|+++....-...+ .+.|.||+ |-- |+ .+..+...+--.|..
T Consensus 524 ~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~~ 596 (720)
T PRK13566 524 GEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAALA 596 (720)
T ss_pred CCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHHH
Confidence 456688888876544 457799999999999998865322222 46787776 211 11 223344455555567
Q ss_pred CCCcEEEecc
Q 016064 316 MNKPVYVAAE 325 (396)
Q Consensus 316 ~~vPvyV~ae 325 (396)
.++|++-+|=
T Consensus 597 ~~iPILGICl 606 (720)
T PRK13566 597 RNLPIFGVCL 606 (720)
T ss_pred CCCcEEEEeh
Confidence 7999997773
No 280
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=43.15 E-value=2.5e+02 Score=28.35 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m- 281 (396)
+....+++|.|.+..+..++....+.|. +|++. .|.+.... ..+...|+.+..++. ..+-..+
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3444577777777665555544433343 55554 36554332 344566877766531 1222222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..+|++.. -=-..|.++.+-=-..++-.|+++++.+++
T Consensus 167 ~~~~~v~~~~-p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVNN-PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEcC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344444421 111223333322234567778888887764
No 281
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.02 E-value=4.1e+02 Score=27.68 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=51.3
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC--CCCEEEE--cc-hHHHHhcc--cCCEE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL--DVPVKLL--ID-SAVAYTMD--EVDMV 287 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~--GI~vtlI--~D-sav~~~m~--~vd~V 287 (396)
.|.++..++.+..+..+-+-..+-|-....+++...+..--.++...|.+. +.++.++ .| ..+...++ +.|.+
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 578888888887766655555555776655555443332223333444442 2333332 34 22222332 34443
Q ss_pred EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 288 FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
| |+..-..+|++.++|++.++
T Consensus 382 i----------------G~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 I----------------GNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred E----------------ECccHHHHHHHhCCCEEEee
Confidence 2 33334578999999998766
No 282
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=42.94 E-value=2.6e+02 Score=27.65 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=53.6
Q ss_pred ccC-ceEEeecChHHHHHHHHHHHHCCC-eeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc
Q 016064 214 FDG-CTILVHGFSRVVMEVLKMAAQNKK-LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM 281 (396)
Q Consensus 214 ~dg-~~ILT~~~S~~V~~~L~~A~~~gk-~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m 281 (396)
..+ .+|+|.|-+..+..++......|. .-+|++. .|.+.+...+ +...|+++..++.. .+-..+
T Consensus 58 ~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 133 (350)
T TIGR03537 58 DPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG--TPGYPVYERG--ALFAGGEPTAVKLKKEDGFLLRLEKVEKSI 133 (350)
T ss_pred CCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEc--CCCCcchHHH--HHhcCCEEEEcccCcccCCccCHHHHHHhh
Confidence 344 688888888877666654443331 2355543 4776655543 34578777766432 112222
Q ss_pred c-cCCEEEEcceeEeecCCeecccc-------HHHHHHHhhhCCCcEEE
Q 016064 282 D-EVDMVFVGADGVVESGGIINMMG-------TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~-~vd~VlvGAd~V~~NG~v~nkiG-------T~~lAl~Ak~~~vPvyV 322 (396)
. +...+++ + ..-|..| -..++-.|+++++.+++
T Consensus 134 ~~~~~~i~i-------~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 134 LEETKIVWI-------N-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhccEEEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 2 2222222 1 1347777 34566778889987765
No 283
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.81 E-value=41 Score=35.11 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=45.1
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcc--cCCEEEEcceeE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMD--EVDMVFVGADGV 294 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~--~vd~VlvGAd~V 294 (396)
..||.+|.++-=-.+...+++.+..-+|++. |++.|....... ..+++....-.++..+.+ ++|.|+.|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~~---pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKVF---PGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEEE---CCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 6899999988766666666676766788885 555453321000 112222222244444443 599999998775
Q ss_pred eec
Q 016064 295 VES 297 (396)
Q Consensus 295 ~~N 297 (396)
+..
T Consensus 80 l~~ 82 (426)
T PRK13789 80 LVA 82 (426)
T ss_pred HHH
Confidence 544
No 284
>PRK06767 methionine gamma-lyase; Provisional
Probab=42.53 E-value=2.9e+02 Score=28.12 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=49.2
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHHHH-HHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLANE-LAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la~~-L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.|++-+.+..+..+|....+.|. +|++.. |.+.+. .+... +...|+++..+.- ..+-..+ ++..+|++.
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~Gd--~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAGD--HIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 456655555555544444443343 566543 433332 23333 3456888776631 2333333 344455542
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.---..|.+.. -..++-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112343333 25677888999988876
No 285
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=42.53 E-value=3.4e+02 Score=26.68 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.+.++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 111 ~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 111 LALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 355888999999999999988778878899988654
No 286
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=42.48 E-value=49 Score=29.96 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH
Q 016064 192 EKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL 258 (396)
Q Consensus 192 ~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l 258 (396)
+.|.++..+.++.+.+...++-.+|..|.-+|-|.--..+|..+ .-+.++-.+|+|..|..+|+-+
T Consensus 44 ~~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~-g~~~~~I~~vvD~np~K~G~~~ 109 (160)
T PF08484_consen 44 ENFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYF-GLDNDLIDYVVDDNPLKQGKYL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHH-T--TTTS--EEES-GGGTTEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHh-CCCcceeEEEEeCChhhcCccc
Confidence 45556666666666666666667899999999887655566554 2233445667888899999764
No 287
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=42.42 E-value=1.3e+02 Score=27.71 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=52.7
Q ss_pred ceEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc----c-hHHHH-------hccc
Q 016064 217 CTILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI----D-SAVAY-------TMDE 283 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~----D-sav~~-------~m~~ 283 (396)
.+||..|.++.+-..|.+. .++| .+|+++..++ .....+..++...+-++..+. | .++.. .++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGE-AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4677777766654444333 3334 3677775543 234455556655554554332 2 22211 2355
Q ss_pred CCEEEEcceeEeecCCe-------------eccccHHHHHHHh----hhCCCcEEEec
Q 016064 284 VDMVFVGADGVVESGGI-------------INMMGTYQIALVA----HSMNKPVYVAA 324 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v-------------~nkiGT~~lAl~A----k~~~vPvyV~a 324 (396)
+|.|+..|-.. ..+.. .|-.|+..+.-.+ +..++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 78777766322 11111 3666777666555 44555555444
No 288
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=42.37 E-value=1.9e+02 Score=30.41 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=53.6
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.+.+||.+|.+.....+.+...++|. .+|+| =+|-.--..+||++|. ..+++-.-+...+..+|.||.+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~-~~i~I-aNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV-KKITI-ANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISST 246 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC-CEEEE-EcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEec
Confidence 46789999999988888888876553 34443 4777777778888876 56666677888899999999875
No 289
>PRK14368 Maf-like protein; Provisional
Probab=42.34 E-value=1e+02 Score=28.80 Aligned_cols=87 Identities=22% Similarity=0.153 Sum_probs=52.5
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCCc-hhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEe-e
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPDR-SGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVV-E 296 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~~-eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~-~ 296 (396)
|.|..=..+|+.+ |-.|+|+ +.|+.+.. .-..++..|++.+ +-.+.. .-+.+++|||.|. -
T Consensus 11 S~SprR~eLL~~~---g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~vI~aDTvV~~ 77 (193)
T PRK14368 11 SASPRRSELLASA---GIEFDVVPADIPEEPLPGEEPVDHVLRLAREK----------ARAAAALAEGRFFIGADTIVVC 77 (193)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCEEEEeCcEEEE
Confidence 4444334455443 8889988 44544332 2456677776543 111121 2378999999976 5
Q ss_pred cCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 297 SGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 297 NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
||.++.|-.+..=| ++-.-.|.+.-|
T Consensus 78 ~g~ilgKP~~~~eA~~~L~~lsG~~h~v 105 (193)
T PRK14368 78 DGEIMGKPKDEADAVRMLKKLSGVPHEV 105 (193)
T ss_pred CCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 99999999998766 334444554433
No 290
>PRK14367 Maf-like protein; Provisional
Probab=42.31 E-value=1.3e+02 Score=28.32 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=48.2
Q ss_pred CCeeEEE---EeCCCCCc-hhHHHHHHHHhCCCCEEEEcchHHHHhc-----ccCCEEEEcceeEe-ecCCeeccccHHH
Q 016064 239 KKLFRVL---CTEGRPDR-SGLRLANELAKLDVPVKLLIDSAVAYTM-----DEVDMVFVGADGVV-ESGGIINMMGTYQ 308 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~-eG~~la~~L~~~GI~vtlI~Dsav~~~m-----~~vd~VlvGAd~V~-~NG~v~nkiGT~~ 308 (396)
|-.|.|+ +.|+.+.. .-..++.+|++.+-. ++...+ ..-+.+++|||.|. -||.++.|-.+..
T Consensus 21 Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~~~~~vI~aDTvV~~dg~IlgKP~~~e 93 (202)
T PRK14367 21 GYRVVKLPAGIDETVKAGETPARYVQRMAEEKNR-------TALTLFCETNGTMPDFPLITADTCVVSDGIILGKPRSQA 93 (202)
T ss_pred CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccccccCCCCEEEEeCcEEEECCEEecCCCCHH
Confidence 8889987 44553332 245667777655421 122211 12467999999976 6999999999987
Q ss_pred HH--HHhhhCCCcEEE
Q 016064 309 IA--LVAHSMNKPVYV 322 (396)
Q Consensus 309 lA--l~Ak~~~vPvyV 322 (396)
=| ++..-.|.+.-|
T Consensus 94 eA~~~L~~lsG~~h~V 109 (202)
T PRK14367 94 EAIEFLNRLSGKQHTV 109 (202)
T ss_pred HHHHHHHHhCCCCeEE
Confidence 66 444555655544
No 291
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.19 E-value=1.9e+02 Score=23.55 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=56.3
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc--ccCCEEEEcceeE
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM--DEVDMVFVGADGV 294 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m--~~vd~VlvGAd~V 294 (396)
.|..+|.++.-...+..+.+.+..+++. |.+..|.. ......+.|++ ...| .-.++ .++|.|++..-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~----~~~~~~~~~~~--~~~~--~~~ll~~~~~D~V~I~tp~- 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER----AEAFAEKYGIP--VYTD--LEELLADEDVDAVIIATPP- 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH----HHHHHHHTTSE--EESS--HHHHHHHTTESEEEEESSG-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH----HHHHHHHhccc--chhH--HHHHHHhhcCCEEEEecCC-
Confidence 4667787776666776777666778877 66665432 22224566887 4444 33334 489999987533
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
---+.++..|-..|++|++
T Consensus 73 ---------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 73 ---------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp ---------GGHHHHHHHHHHTTSEEEE
T ss_pred ---------cchHHHHHHHHHcCCEEEE
Confidence 2256777888889997776
No 292
>PRK04056 Maf-like protein; Reviewed
Probab=42.15 E-value=1.5e+02 Score=27.41 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=48.4
Q ss_pred CCeeEEE---EeCCCCCc-hhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-ecCCeeccccHHHHH--H
Q 016064 239 KKLFRVL---CTEGRPDR-SGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-ESGGIINMMGTYQIA--L 311 (396)
Q Consensus 239 gk~f~Vi---V~EsrP~~-eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~NG~v~nkiGT~~lA--l 311 (396)
|-.|+|+ +.|+.+.. .-..++..|++.+- -++..-+++ +.+++|||.|. -||.++.|-.+..=| +
T Consensus 19 g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka-------~~v~~~~~~-~~~vI~aDTvV~~~g~ilgKP~~~~eA~~~ 90 (180)
T PRK04056 19 GIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL-------EQFLKKYGN-ECNLLVADSVVSCGNKILRKAKDKEEAREM 90 (180)
T ss_pred CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhCCC-CCEEEEeCEEEEECCEEecCCCCHHHHHHH
Confidence 8889988 44554433 34567777776541 112222221 36999999977 699999999988766 4
Q ss_pred HhhhCCCcEEEe
Q 016064 312 VAHSMNKPVYVA 323 (396)
Q Consensus 312 ~Ak~~~vPvyV~ 323 (396)
+-.-.|.+..|.
T Consensus 91 L~~lsg~~h~V~ 102 (180)
T PRK04056 91 LKLQSGNEISVL 102 (180)
T ss_pred HHHHCCCcEEEE
Confidence 444456555543
No 293
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=42.14 E-value=2.3e+02 Score=30.03 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhccc--cCceEEeecChHHHHHHHHHHHH---CCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE
Q 016064 198 SYKARKIIAMLSQDFIF--DGCTILVHGFSRVVMEVLKMAAQ---NKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL 272 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~--dg~~ILT~~~S~~V~~~L~~A~~---~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI 272 (396)
++.+++.+++ +|. +.|+|.|-+-+....-+|+.-.. .+.+-+|+-+...-.+- ..-.+.|.+.|+.|+++
T Consensus 87 ~E~aR~~VAk----lInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v-~~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 87 VEAAREQVAK----LINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCV-LDSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHHH----HhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcch-hHHHHHHHhcCeEEEEe
Confidence 4567777765 564 34677777776666666655332 12222566555432221 12367899999999999
Q ss_pred cchHHHHhc-------ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 273 IDSAVAYTM-------DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 273 ~Dsav~~~m-------~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+-..-+... =+-+-.+++.+.|..-=++++.+ --+..+|++.+|.|.+
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 865322222 12355666777766655555544 3477799999996655
No 294
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=42.06 E-value=1.2e+02 Score=28.71 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHC---CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCee
Q 016064 225 SRVVMEVLKMAAQN---KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGII 301 (396)
Q Consensus 225 S~~V~~~L~~A~~~---gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~ 301 (396)
+.....++..|++- +.++-|=|+=+. +|.+..+.|.+.||+|.....-++...+-- .-.||+-|...=+-+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~A---a~AGA~yvsP~vgR~ 133 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLA---AKAGATYVSPFVGRI 133 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHH---HHcCCCEEEEecChH
Confidence 44556666555432 222222133332 899999999999998765544333222210 111455544433332
Q ss_pred cccc---HH---HHHHHhhhCCCcEEEeccccc
Q 016064 302 NMMG---TY---QIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 302 nkiG---T~---~lAl~Ak~~~vPvyV~aes~K 328 (396)
...| -. .+.-+++.++.|.=|++.++|
T Consensus 134 ~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 134 DDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred hhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 2233 22 334455677888877777776
No 295
>PRK05973 replicative DNA helicase; Provisional
Probab=42.06 E-value=1.1e+02 Score=29.65 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=62.5
Q ss_pred ccccCceEEeecChH-----HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE-----EEc---ch-HH
Q 016064 212 FIFDGCTILVHGFSR-----VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVK-----LLI---DS-AV 277 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~-----~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt-----lI~---Ds-av 277 (396)
=+..|+.++..|.++ ....++..+.++|.+.-.+-.|..|. ++..++.+.|++.. ++. |. ..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~----~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~ 135 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQ----DVRDRLRALGADRAQFADLFEFDTSDAICA 135 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHH----HHHHHHHHcCCChHHhccceEeecCCCCCH
Confidence 346788888888755 36667887777776554455565543 45555666666421 111 11 12
Q ss_pred HHhc------ccCCEEEEcceeEeecCCeeccccH--HHHHHHhhhCCCcEEEecccccc
Q 016064 278 AYTM------DEVDMVFVGADGVVESGGIINMMGT--YQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 278 ~~~m------~~vd~VlvGAd~V~~NG~v~nkiGT--~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
.+++ .+.+.||+=.=..+..+.--...+. ..+-..||++++|++++++...-
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 2222 1456666522111111100011222 33667899999999999976554
No 296
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=42.00 E-value=2.1e+02 Score=27.76 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=49.0
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeC-CCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTE-GRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~E-srP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
.|..+|.++-.-+.+.++..+...+++. +++ ..|...|+.++......+..+....|-.. +...+|.|+.-+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~--l~~~~DvVIdfT---- 76 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEA--VETDPDVLIDFT---- 76 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHH--hcCCCCEEEECC----
Confidence 5677774333333333333334567766 455 33433344433221111122333444221 234567666532
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+.......+..|-++|+|+++....
T Consensus 77 ------~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 77 ------TPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred ------ChHHHHHHHHHHHHCCCCEEEECCC
Confidence 4556677778888888888776543
No 297
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=41.82 E-value=1e+02 Score=32.70 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=56.3
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
|..|+.+|...+=+.+.+..++.| .+|++.|.+|.-++.... .+...||++..-...- .....+|.|++.-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SP---- 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSP---- 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEECC----
Confidence 677888776544333343344445 688888999988655544 6777888776654332 3345666666533
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
|+ -.+.++...|++.++|++
T Consensus 78 ---Gi---~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 78 ---GI---PPTHPLVEAAKAAGIEII 97 (448)
T ss_pred ---CC---CCCCHHHHHHHHcCCcEE
Confidence 33 234456777778888865
No 298
>PRK07340 ornithine cyclodeaminase; Validated
Probab=41.74 E-value=1.8e+02 Score=28.90 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=52.6
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc---
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA--- 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA--- 291 (396)
+..+|+.+|........+..+......-+|+|. +|-...-.+++.++.+.|+++. . ++ ...++.++|.|+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~-~r~~~~a~~~a~~~~~~~~~~~-~-~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVR-GRTAASAAAFCAHARALGPTAE-P-LD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHHHHhcCCeeE-E-CC-HHHHhhcCCEEEEccCCC
Confidence 567899888877666655554332222245555 4433445678888887777766 2 22 333457889887622
Q ss_pred eeE----eecCCeeccccHH
Q 016064 292 DGV----VESGGIINMMGTY 307 (396)
Q Consensus 292 d~V----~~NG~v~nkiGT~ 307 (396)
+-+ +.-|..+|-+|++
T Consensus 200 ~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CceeCccCCCCCEEEecCCC
Confidence 112 3556666767654
No 299
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=41.67 E-value=2.1e+02 Score=28.44 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc--c-hHHHHhccc----CCEEEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI--D-SAVAYTMDE----VDMVFV 289 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~--D-sav~~~m~~----vd~Vlv 289 (396)
+.|++.+.+.....++..+...|. .|++ + .|.+.+...+. .-.|+++..+. | ..+-..+.+ -+++++
T Consensus 95 ~~i~~~sG~~a~~~a~~~~~~~gd--~vi~-~-~~~~~~~~~~~--~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 95 AALVFQSGFNTNQGVLSALLRKGD--IVLS-D-ELNHASIIDGL--RLTKATKKIYKHADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred cEEEECcHHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHHH--HhcCCceEEeCCCCHHHHHHHHHhhccCCCeEEE
Confidence 444444446655555554443343 4443 3 35555443332 33566654442 2 223333321 133333
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
...+....|.+.. -..++-+|++|++++++
T Consensus 169 -~~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 169 -TDGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred -EecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 2223333233333 25577889999987776
No 300
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=41.62 E-value=3.3e+02 Score=26.28 Aligned_cols=95 Identities=20% Similarity=0.140 Sum_probs=49.9
Q ss_pred ceE-EeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------------hHHHHhc
Q 016064 217 CTI-LVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------------SAVAYTM 281 (396)
Q Consensus 217 ~~I-LT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------------sav~~~m 281 (396)
.++ +|-|.+.....++..+.+.| -+|++. +|...+.. ..+...|+.+.++.- ..+...+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~g--d~Vlv~--~~~h~s~~--~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGPG--DKILID--RNCHKSVI--NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCCC--CEEEEe--CCchHHHH--HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 46554444555554443333 355554 44443332 334446766655521 1233333
Q ss_pred ---ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 ---DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ---~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++..|++... ...|.+.. -..++-+|++++++++|
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~liv 188 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLV 188 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEE
Confidence 24566666532 23455543 35688889999999988
No 301
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=41.50 E-value=1.1e+02 Score=30.32 Aligned_cols=108 Identities=13% Similarity=0.007 Sum_probs=60.2
Q ss_pred cCceEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHh---CCC-CEEEEc----c-hHHHHhcccC
Q 016064 215 DGCTILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAK---LDV-PVKLLI----D-SAVAYTMDEV 284 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~---~GI-~vtlI~----D-sav~~~m~~v 284 (396)
.+.+||..|.++-+-.-|.+ ..++| .+|++++..+......+...... ..+ .+.++. | ..+..+++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 45688888988876554433 33334 57887765543222222211111 111 122222 3 3566677889
Q ss_pred CEEEEcceeEeec---C-----CeeccccHHHHHHHhhhCCCc-EEEec
Q 016064 285 DMVFVGADGVVES---G-----GIINMMGTYQIALVAHSMNKP-VYVAA 324 (396)
Q Consensus 285 d~VlvGAd~V~~N---G-----~v~nkiGT~~lAl~Ak~~~vP-vyV~a 324 (396)
|.||=-|-..... . .-.|-.||..+.-+|++++++ |+.+.
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 9888766432111 1 125678999999999999875 54443
No 302
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=41.46 E-value=2.9e+02 Score=26.45 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=63.0
Q ss_pred HhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE---EeC-CCCCch--------h----HHHHHHHHhC--CCCE
Q 016064 209 SQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL---CTE-GRPDRS--------G----LRLANELAKL--DVPV 269 (396)
Q Consensus 209 a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi---V~E-srP~~e--------G----~~la~~L~~~--GI~v 269 (396)
+.+.|.+ .+|+..|-.+.=-.+++.....| +++.++ .+| +.-..| | ..+++.|.+. .+++
T Consensus 18 ~q~~L~~-~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i 96 (240)
T TIGR02355 18 GQEALKA-SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI 96 (240)
T ss_pred HHHHHhC-CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE
Confidence 3444444 67888888776444555555556 344444 122 111111 2 2335667665 4555
Q ss_pred EEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 270 KLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 270 tlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+.+. ...+..+++++|.|+.+.|.... .+.+.-+|.++++|++..+
T Consensus 97 ~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~---------r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 97 NPINAKLDDAELAALIAEHDIVVDCTDNVEV---------RNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred EEEeccCCHHHHHHHhhcCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 5554 12355677899999988877432 4667788999999999743
No 303
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=41.42 E-value=2.4e+02 Score=28.41 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=52.8
Q ss_pred ceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHH-HhcccC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVA-YTMDEV 284 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~-~~m~~v 284 (396)
.+++|.|.+..+..++...... |..-.|+|. .|.+.+...+ +...|+++..++.. ++. .+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 5777877777766666554443 223455554 6777665543 34457777666521 121 112344
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.++++- .-=-+-|.++.+-=-..++-+|+++++.+++
T Consensus 168 k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 168 QLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred EEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 455442 1111223333333345667778888886653
No 304
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=41.41 E-value=78 Score=30.73 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHhcccCCEEEEcceeEeecCCeecc-ccHHHHHHHhhhCCCcEEEecccc
Q 016064 276 AVAYTMDEVDMVFVGADGVVESGGIINM-MGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 276 av~~~m~~vd~VlvGAd~V~~NG~v~nk-iGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
.+...++++|.||+|...++.+..-... .--..+..+|+..++|+++.+-+.
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~gi 109 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGI 109 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4555678999999999888876432111 111235677889999999987653
No 305
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=41.39 E-value=1.5e+02 Score=29.43 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCC------c--------hh----HHHHHHHHhCC--C
Q 016064 208 LSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPD------R--------SG----LRLANELAKLD--V 267 (396)
Q Consensus 208 ~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~------~--------eG----~~la~~L~~~G--I 267 (396)
.+.+.+. +.+||..|-++.=..+++.....|-+ ++.+.|..+. . -| ...++.|++.+ +
T Consensus 12 eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V 89 (286)
T cd01491 12 EAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYV 89 (286)
T ss_pred HHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCC
Confidence 3344443 46888889988877777777777753 3333443321 0 02 23356677664 6
Q ss_pred CEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 268 PVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 268 ~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+++.....-....+.+.|.|+...+.+-. -..+.-+|+.+++||+.+.
T Consensus 90 ~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 90 PVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred EEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 66666544223456889988877653211 1235567889999998854
No 306
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=41.07 E-value=4e+02 Score=27.00 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCC------Cch----------h----HHHHHHHHh
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRP------DRS----------G----LRLANELAK 264 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP------~~e----------G----~~la~~L~~ 264 (396)
++..+.+.|.+ .+|+..|-.+.=-.++....+.|.. ++.++|... ..| | ..+++.|.+
T Consensus 14 ~G~~~Q~~L~~-~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 14 IGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred cCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 45556666655 5777778776544444444555753 344344321 000 2 122455664
Q ss_pred CC--CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 265 LD--VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 265 ~G--I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.+ +.++.+. ...+..+++++|.|+.+.|.. .--+.+.-+|..+++|++.++
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 43 5554443 234456688999999998743 234577888999999998643
No 307
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.06 E-value=1.2e+02 Score=24.80 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=32.1
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--hHHHHhcccCCEEEEcce
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--SAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--sav~~~m~~vd~VlvGAd 292 (396)
.||+.|.|+.....+... .+-+.|.+.|+++.+..- +.+.....++|.++.+.+
T Consensus 4 kILvvCgsG~~TS~m~~~---------------------ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAE---------------------EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHH---------------------HHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 588888887655555221 122455667777665542 233334467888888764
No 308
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=41.03 E-value=1e+02 Score=32.44 Aligned_cols=95 Identities=15% Similarity=0.281 Sum_probs=63.2
Q ss_pred HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch-------------HHHHh---cccCCEEEEcc
Q 016064 228 VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS-------------AVAYT---MDEVDMVFVGA 291 (396)
Q Consensus 228 V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-------------av~~~---m~~vd~VlvGA 291 (396)
++.+....+++..+..+|++--.|.. .....+.+.+.|+.++.=++. ++|-+ .+-.|.+|||
T Consensus 247 ~l~~~~~l~~~~~~~llIlVPRHpER-f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG- 324 (419)
T COG1519 247 ILDAHQALKKQFPNLLLILVPRHPER-FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVG- 324 (419)
T ss_pred HHHHHHHHHhhCCCceEEEecCChhh-HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEEC-
Confidence 55555555555666778877777764 445566677777665544333 23332 3667777777
Q ss_pred eeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccccccc
Q 016064 292 DGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARL 332 (396)
Q Consensus 292 d~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~ 332 (396)
|++++ +|-.++-- +..+++||+.=--+++|.+.
T Consensus 325 ------GSlv~-~GGHN~LE-pa~~~~pvi~Gp~~~Nf~ei 357 (419)
T COG1519 325 ------GSLVP-IGGHNPLE-PAAFGTPVIFGPYTFNFSDI 357 (419)
T ss_pred ------CcccC-CCCCChhh-HHHcCCCEEeCCccccHHHH
Confidence 88888 88888754 55689999987777888764
No 309
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=40.97 E-value=1e+02 Score=28.01 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=35.1
Q ss_pred eEEeecChHHHHHHHHHHHHCC---CeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNK---KLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~g---k~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~ 273 (396)
+|-||.....+.++|....++. ..++|+|++..+..+-..+.+++.+....+.++.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 4555666666777777766553 3678887776666555566666665544566664
No 310
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=40.93 E-value=92 Score=26.05 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=39.0
Q ss_pred ccccCceEEeecChHH---HHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEEcchH
Q 016064 212 FIFDGCTILVHGFSRV---VMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLLIDSA 276 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~---V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa 276 (396)
.+..+|.++.+|+|+. +...++.|+++|- +++ ++... .+++.-.+.|+.+..+++..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~--~iI~IT~~~------~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGA--KIVAITSGG------KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--EEEEEeCCc------hHHHHHHHcCCcEEECCCCC
Confidence 5678899999998764 6777778877664 444 44321 36665556788888888754
No 311
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=40.65 E-value=2.5e+02 Score=29.00 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=62.9
Q ss_pred HHHHHHHhhcc--ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh---CCCCEEEEcch-H
Q 016064 203 KIIAMLSQDFI--FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK---LDVPVKLLIDS-A 276 (396)
Q Consensus 203 ~~Ia~~a~~~I--~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~---~GI~vtlI~Ds-a 276 (396)
+.+++.-+.+| +.++++.|-+-|..+.++|..|.+....-+|||.|+.-.-.+.-+|.-|.+ .|.++..+..- +
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~ 158 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRA 158 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHH
Confidence 45666666777 468899999999999999998887655568999998887777777665543 34566554443 4
Q ss_pred HHHhcccCCEEEEcceeEeecCC
Q 016064 277 VAYTMDEVDMVFVGADGVVESGG 299 (396)
Q Consensus 277 v~~~m~~vd~VlvGAd~V~~NG~ 299 (396)
+..+...=..|++=.+.=+..|.
T Consensus 159 ~~~~~~dd~AvV~L~~V~y~TGq 181 (407)
T COG3844 159 LEEAITDDVAVVLLSHVNYKTGQ 181 (407)
T ss_pred HHHhhccceEEEEeccccccccc
Confidence 44444333333333333333343
No 312
>PRK14852 hypothetical protein; Provisional
Probab=40.62 E-value=3.6e+02 Score=31.62 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE---EeC-C---CCC--ch---h----HHHHHHHHhC
Q 016064 203 KIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL---CTE-G---RPD--RS---G----LRLANELAKL 265 (396)
Q Consensus 203 ~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi---V~E-s---rP~--~e---G----~~la~~L~~~ 265 (396)
..|+..+++.|++ .+|+..|-+++=-.+++.....| .+++++ ++| | |.. .+ | ..+++.|.+.
T Consensus 320 ~lig~e~Q~kL~~-srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I 398 (989)
T PRK14852 320 GLVDYAGQRRLLR-SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV 398 (989)
T ss_pred hhcCHHHHHHHhc-CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH
Confidence 3456666667665 68888898876555555555556 445555 333 2 211 11 2 2346667755
Q ss_pred C--CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 266 D--VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 266 G--I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
+ ++++.+. ...+..+++.+|.||-+.|.+..+ +--+... .|..++|||+-++.
T Consensus 399 NP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~------~rr~l~~-~c~~~~IP~I~ag~ 457 (989)
T PRK14852 399 NPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALD------IRRRLFN-RALELGIPVITAGP 457 (989)
T ss_pred CCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHH------HHHHHHH-HHHHcCCCEEEeec
Confidence 4 6666663 345666789999999888764221 1222333 36889999997553
No 313
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=40.56 E-value=96 Score=32.05 Aligned_cols=49 Identities=22% Similarity=0.452 Sum_probs=40.3
Q ss_pred cchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 273 IDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 273 ~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+-.++.+++..=+. .-|+++.-|.|..-+|+-.-.-++++|++|+.|..
T Consensus 171 ~PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaG 219 (364)
T PRK15062 171 VPPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAG 219 (364)
T ss_pred cHHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEec
Confidence 34567777754443 66888888999999999999999999999999865
No 314
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.23 E-value=1.3e+02 Score=27.71 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=52.5
Q ss_pred CceEEeecChHHHHHH-HHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhc-------c
Q 016064 216 GCTILVHGFSRVVMEV-LKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTM-------D 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~-L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m-------~ 282 (396)
|.++|+.|.++-+-.- .+...++| .+|++.-.|.......+++++.+.|-.+.++ .| ..+..++ +
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4577777777655443 33444444 4566555555555667777787766554443 33 2233333 3
Q ss_pred cCCEEEEcceeEeecCCe-------------eccccHHHHHHHhhh
Q 016064 283 EVDMVFVGADGVVESGGI-------------INMMGTYQIALVAHS 315 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v-------------~nkiGT~~lAl~Ak~ 315 (396)
.+|.|+-.|- ....+.. +|..|+..++-++..
T Consensus 82 ~id~vi~~ag-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAA-SGVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4666666541 1111111 566788887766653
No 315
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=39.99 E-value=94 Score=29.25 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=50.0
Q ss_pred EEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeec
Q 016064 219 ILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVES 297 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~N 297 (396)
||..|.++.+-..|.+ +.++| .+|+++...+....... ..+ +..+.+......+.++|.|+--|-....+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG--HEVTILTRSPPAGANTK-----WEG--YKPWAPLAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC--CEEEEEeCCCCCCCccc-----cee--eecccccchhhhcCCCCEEEECCCCCccc
Confidence 4556666655443433 33445 56776554443221110 011 11111122334457788888665433222
Q ss_pred CCe----------eccccHHHHHHHhhhCCC-c-EEEecc
Q 016064 298 GGI----------INMMGTYQIALVAHSMNK-P-VYVAAE 325 (396)
Q Consensus 298 G~v----------~nkiGT~~lAl~Ak~~~v-P-vyV~ae 325 (396)
|.. .|-.||..+.-+|+++++ + +++.+.
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 221 367789999999999987 3 444333
No 316
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.90 E-value=1.6e+02 Score=25.35 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=42.7
Q ss_pred eEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhc------ccCC-EEEE
Q 016064 218 TILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTM------DEVD-MVFV 289 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m------~~vd-~Vlv 289 (396)
+|.||.....+.+.|....++ .+.|+|+|++.....+..+.++++....+-+........+..+ .+.| .+++
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~l 82 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALATGDIIGFL 82 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCCCEEEEe
Confidence 345566666677777766554 3457888777554444455555554431222222222222222 2344 3445
Q ss_pred cceeEeecCCeec
Q 016064 290 GADGVVESGGIIN 302 (396)
Q Consensus 290 GAd~V~~NG~v~n 302 (396)
-+|.++..+.+..
T Consensus 83 d~D~~~~~~~~~~ 95 (202)
T cd06433 83 NSDDTLLPGALLA 95 (202)
T ss_pred CCCcccCchHHHH
Confidence 6666666544433
No 317
>PRK15029 arginine decarboxylase; Provisional
Probab=39.88 E-value=1.3e+02 Score=34.23 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=52.3
Q ss_pred EEEEeCCCCCc-------hhHHHHHHHHhCCCCEEEEcchHH--HHhcc--cCCEEEEcceeEeecCCeeccccHHHHHH
Q 016064 243 RVLCTEGRPDR-------SGLRLANELAKLDVPVKLLIDSAV--AYTMD--EVDMVFVGADGVVESGGIINMMGTYQIAL 311 (396)
Q Consensus 243 ~ViV~EsrP~~-------eG~~la~~L~~~GI~vtlI~Dsav--~~~m~--~vd~VlvGAd~V~~NG~v~nkiGT~~lAl 311 (396)
+|+++|..+.. -...+...|.+.|..|....+..- ..+-. +.|+||+ |.-+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57777777642 355668899999999998886433 33323 5899998 45566655222 11122222
Q ss_pred Hhh-hCCCcEEEeccccc
Q 016064 312 VAH-SMNKPVYVAAESYK 328 (396)
Q Consensus 312 ~Ak-~~~vPvyV~aes~K 328 (396)
+-+ ..++||++++..-+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 222 35899999987664
No 318
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=39.78 E-value=2.7e+02 Score=28.22 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=55.0
Q ss_pred hccccCceEEeecChHHHHHHHHHHHHC-CCeeEEEEeCCCCC-----chh----HHHHHHHHhC--CCCEEEEcchH-H
Q 016064 211 DFIFDGCTILVHGFSRVVMEVLKMAAQN-KKLFRVLCTEGRPD-----RSG----LRLANELAKL--DVPVKLLIDSA-V 277 (396)
Q Consensus 211 ~~I~dg~~ILT~~~S~~V~~~L~~A~~~-gk~f~ViV~EsrP~-----~eG----~~la~~L~~~--GI~vtlI~Dsa-v 277 (396)
+.|++|+ ++-.|+++|+..+....... .+..+|+.+=+... ..- .+||+.+... -+++-++.++. .
T Consensus 110 ~~l~~gd-vigV~wGrTv~a~~~~l~~~~~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~~~~~~l~aP~~~~s~e~ 188 (321)
T COG2390 110 SLLKPGD-VIGVGWGRTLSAVVDNLPPAPLRDVKVVQLTGGVGHADGSYNANTIALRLAEKLGAESYLLPAPLVASSPEL 188 (321)
T ss_pred HhCCCCC-EEEEeccHHHHHHHHhcCcCccCCeEEEECCCCCCCCccccCHHHHHHHHHHHhCCcEEeeecCccCCCHHH
Confidence 3678898 77889999999998776543 45577775544433 111 2444444433 24444455542 2
Q ss_pred HHhc-------------ccCCEEEEcceeEeecCC
Q 016064 278 AYTM-------------DEVDMVFVGADGVVESGG 299 (396)
Q Consensus 278 ~~~m-------------~~vd~VlvGAd~V~~NG~ 299 (396)
...| +++|+.|+|.=.+.++..
T Consensus 189 r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~ 223 (321)
T COG2390 189 REALLQEPSVREVLDLARSADLALVGIGSLSANST 223 (321)
T ss_pred HHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccch
Confidence 2222 689999999977777654
No 319
>PRK10637 cysG siroheme synthase; Provisional
Probab=39.75 E-value=1.3e+02 Score=31.75 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=62.7
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||.+|......+=++...+.|-+++|+-.|=.|. + ++|.+.| .++++...--...+..+++||...|-=
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~-----~-~~l~~~~-~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ-----F-TAWADAG-MLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH-----H-HHHHhCC-CEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 57899999999987776666666687788774332221 1 3455544 466666554445567788877775432
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
--| ..++-.|+..+++|.++-.
T Consensus 84 ~~n---------~~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 84 AVN---------QRVSEAAEARRIFCNVVDA 105 (457)
T ss_pred HHh---------HHHHHHHHHcCcEEEECCC
Confidence 222 4678889999999988753
No 320
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=39.73 E-value=1.9e+02 Score=29.48 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=46.7
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEcce
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVGAD 292 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvGAd 292 (396)
+++-+.+..+..++....+.|. +|++. .|.+.|. .+ ...+...|+++..+.- ..+-..+ ++..+|++..
T Consensus 80 i~~~sG~~Ai~~~l~all~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~- 154 (388)
T PRK07811 80 RAFSSGMAATDCLLRAVLRPGD--HIVIP--NDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVET- 154 (388)
T ss_pred EEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEEC-
Confidence 4443444444444444433343 56653 3555543 33 3344556888777642 2233333 3444444321
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-.-..|.+ .--..++-+|++++++++|
T Consensus 155 p~NPtg~~---~dl~~I~~la~~~gi~lIv 181 (388)
T PRK07811 155 PTNPLLSI---TDIAALAELAHDAGAKVVV 181 (388)
T ss_pred CCCCccee---cCHHHHHHHHHHcCCEEEE
Confidence 00111222 2334677788999988877
No 321
>PRK06207 aspartate aminotransferase; Provisional
Probab=39.73 E-value=3.6e+02 Score=27.43 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=49.7
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-------------hHHHHhc-
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-------------SAVAYTM- 281 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-------------sav~~~m- 281 (396)
..+++|.|.+..+..++....+.| -+|++. .|.+.+.. ..+...|.++..++. ..+...+
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 568888887777665555444334 345543 36665543 333445665544431 1222222
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+++.+|++-.=. -+.|.++..-==..++-+|+++++.+++
T Consensus 177 ~~~k~v~l~~P~-NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 177 AGVRVFLFSNPN-NPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred hcCeEEEECCCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334444442110 2223333322223467778888887664
No 322
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=39.70 E-value=2.1e+02 Score=28.74 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=59.4
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEE-cchHHHH-hcccCCEEEEccee
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLL-IDSAVAY-TMDEVDMVFVGADG 293 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI-~Dsav~~-~m~~vd~VlvGAd~ 293 (396)
-.|..+|....-...+....+ .+.+++. +++..|...|...+++ .|+++++- .|..+.. -.+++|.|++.+-
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~-~~~velvAVvdid~es~gla~A~~---~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~- 79 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILR-SEHLEPGAMVGIDPESDGLARARR---LGVATSAEGIDGLLAMPEFDDIDIVFDATS- 79 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhc-CCCcEEEEEEeCChhhHHHHHHHH---cCCCcccCCHHHHHhCcCCCCCCEEEECCC-
Confidence 467777843333333444433 4567766 6777777677776664 58877642 1222210 1267999988651
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
.--....+..+..+|+.|+...+.+
T Consensus 80 ---------a~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 80 ---------AGAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred ---------HHHHHHHHHHHHHcCCeEEECCccc
Confidence 1234667888888999998887776
No 323
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=39.58 E-value=5.4e+02 Score=28.70 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=70.4
Q ss_pred cCceEEeecChHHHHHHHHHHHHCC-CeeEEEEeCCCCCchh-----HHHHHHHHhCCCCEEEEcc---hHHHHhcccCC
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNK-KLFRVLCTEGRPDRSG-----LRLANELAKLDVPVKLLID---SAVAYTMDEVD 285 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~ViV~EsrP~~eG-----~~la~~L~~~GI~vtlI~D---sav~~~m~~vd 285 (396)
...+|+..|-.+....++....+.| .+|+.++.+.-+.+-+ .++|++ ...+|++..+.+ ..+-.+++..|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 4679999999888888888888888 6799998887766544 233444 234788888874 45556678899
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.||.-+|-- +.-....+-..|...|+|++-
T Consensus 207 iVi~vsDdy-------~~~~Lr~lN~acvkegk~~IP 236 (637)
T TIGR03693 207 WVLYVSDNG-------DIDDLHALHAFCKEEGKGFIP 236 (637)
T ss_pred EEEEECCCC-------ChHHHHHHHHHHHHcCCCeEE
Confidence 998877632 222466677788888955553
No 324
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.55 E-value=1e+02 Score=25.28 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHhCCCCEEEEcch--HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 259 ANELAKLDVPVKLLIDS--AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 259 a~~L~~~GI~vtlI~Ds--av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
-+.+.+.|+++++..-+ .+.-.+.+.|.|+++.+.-+.= ..+--.+...++||.++-
T Consensus 20 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~---------~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 20 KKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYML---------DEVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHH---------HHHHHHhccCCCcEEEcC
Confidence 35567778877665544 3444678899999987653321 112222455789998754
No 325
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=39.54 E-value=2.3e+02 Score=27.14 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=65.4
Q ss_pred HHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE----EeCC---CCC-----chh----HHHHHHHHhCC--CC
Q 016064 208 LSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL----CTEG---RPD-----RSG----LRLANELAKLD--VP 268 (396)
Q Consensus 208 ~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi----V~Es---rP~-----~eG----~~la~~L~~~G--I~ 268 (396)
.+.+.|++ ..|+..|-+++=-.+.+...+.|. ++.++ |.++ |-. .-| ..+++.|.+.+ +.
T Consensus 4 e~~~~L~~-~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~ 82 (231)
T cd00755 4 EGLEKLRN-AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECE 82 (231)
T ss_pred HHHHHHhC-CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcE
Confidence 34455544 578888888765555555556664 45554 2222 111 012 34467777664 45
Q ss_pred EEEEc-----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc-cccc
Q 016064 269 VKLLI-----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY-KFAR 331 (396)
Q Consensus 269 vtlI~-----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~-Kf~~ 331 (396)
++.+. ++.-..+-.+.|.|+...|.+-. ...+.-.|+++++||+.+...- |+++
T Consensus 83 V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~---------k~~L~~~c~~~~ip~I~s~g~g~~~dp 142 (231)
T cd00755 83 VDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRA---------KVALIAYCRKRKIPVISSMGAGGKLDP 142 (231)
T ss_pred EEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHhCCCEEEEeCCcCCCCC
Confidence 55444 23323333578988888776432 2456677899999999865443 4443
No 326
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=39.36 E-value=3e+02 Score=29.02 Aligned_cols=110 Identities=15% Similarity=0.076 Sum_probs=64.2
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE----EeCCCCC--------chhH----HHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL----CTEGRPD--------RSGL----RLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi----V~EsrP~--------~eG~----~la~~L~~~G- 266 (396)
.+..|++.|.+ ..||..|.+++-..+++.....|. +|.++ |.++.=. .-|+ .+++.|.+.+
T Consensus 10 wG~~gQ~~L~~-s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp 88 (425)
T cd01493 10 WGEHGQAALES-AHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNP 88 (425)
T ss_pred hHHHHHHHHhh-CeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCC
Confidence 45566666654 577778988888888888888785 46655 2222111 0132 3355566654
Q ss_pred -CCEEEEcchH------HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 267 -VPVKLLIDSA------VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 267 -I~vtlI~Dsa------v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+.++.+..+- ...+..+.|.||...+. ..=-..+.-.|+++++|++.+.
T Consensus 89 ~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~---------~~~~~~L~~~c~~~~iPlI~~~ 144 (425)
T cd01493 89 DVNGSAVEESPEALLDNDPSFFSQFTVVIATNLP---------ESTLLRLADVLWSANIPLLYVR 144 (425)
T ss_pred CCEEEEEecccchhhhhHHHHhcCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEe
Confidence 5555554321 23456788888754321 1111335667889999998754
No 327
>PRK08223 hypothetical protein; Validated
Probab=39.23 E-value=4.1e+02 Score=26.57 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=62.6
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-C---CCCc-----hh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-G---RPDR-----SG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-s---rP~~-----eG----~~la~~L~~~G- 266 (396)
|+..+++.|++ .+|+..|-.+.=-.+++.....|- ++.++ ++| | |-.. -| ..+++.|.+.+
T Consensus 17 iG~e~Q~kL~~-s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP 95 (287)
T PRK08223 17 ITPTEQQRLRN-SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP 95 (287)
T ss_pred cCHHHHHHHhc-CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC
Confidence 55556666665 577777876653444444444463 45544 222 1 2111 12 23456676554
Q ss_pred -CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 -VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 -I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+. ...+..+++++|.|+=+.|.. +----+.+.-+|+.+++|++.+
T Consensus 96 ~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~-------~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 96 ELEIRAFPEGIGKENADAFLDGVDVYVDGLDFF-------EFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred CCEEEEEecccCccCHHHHHhCCCEEEECCCCC-------cHHHHHHHHHHHHHcCCCEEEE
Confidence 5554443 223455678899887665542 1112477778899999999875
No 328
>PRK15456 universal stress protein UspG; Provisional
Probab=39.07 E-value=1.1e+02 Score=25.83 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.++|++++|+.+- ..+.. -+||-.-.+ .++.++||+|+
T Consensus 104 ~~~DLIVmG~~g~-~~~~~--llGS~a~~v-~~~a~~pVLvV 141 (142)
T PRK15456 104 LGADVVVIGSRNP-SISTH--LLGSNASSV-IRHANLPVLVV 141 (142)
T ss_pred cCCCEEEEcCCCC-Cccce--ecCccHHHH-HHcCCCCEEEe
Confidence 3789999999862 22222 257765554 67788999986
No 329
>PRK10481 hypothetical protein; Provisional
Probab=39.05 E-value=3.6e+02 Score=25.92 Aligned_cols=85 Identities=18% Similarity=0.098 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch-------HHHHhcccCCEEEEcceeEeecCCeec
Q 016064 230 EVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS-------AVAYTMDEVDMVFVGADGVVESGGIIN 302 (396)
Q Consensus 230 ~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-------av~~~m~~vd~VlvGAd~V~~NG~v~n 302 (396)
.-+..|...|++|-|++... .++.+..++..+.|+++.+...+ .+...-++.. --|||.|+-++.=++
T Consensus 120 ~~lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~--~~gaD~Ivl~C~G~~ 194 (224)
T PRK10481 120 PPLVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELL--DQGADVIVLDCLGYH 194 (224)
T ss_pred HHHHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhh--cCCCCEEEEeCCCcC
Confidence 33445566688999997643 34556678888889998876622 1211111111 135555555544443
Q ss_pred cccHHHHHHHhhhCCCcEEE
Q 016064 303 MMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 303 kiGT~~lAl~Ak~~~vPvyV 322 (396)
. -..+.+.+..++||+-
T Consensus 195 ~---~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 195 Q---RHRDLLQKALDVPVLL 211 (224)
T ss_pred H---HHHHHHHHHHCcCEEc
Confidence 3 4477888999999974
No 330
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=38.92 E-value=1.7e+02 Score=29.73 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=46.2
Q ss_pred CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEE--------------EEcc--hHHHHhcccCCEEEEcceeEeecCCeec
Q 016064 239 KKLFRVLCTEGRPDRSGLRLANELAKLDVPVK--------------LLID--SAVAYTMDEVDMVFVGADGVVESGGIIN 302 (396)
Q Consensus 239 gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vt--------------lI~D--sav~~~m~~vd~VlvGAd~V~~NG~v~n 302 (396)
..+++++++-..|.. ..++.+.+.+.|+... ++.| ..+..++..+|.+++|..- .+.|
T Consensus 260 ~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~---- 333 (425)
T PRK05749 260 FPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRG---- 333 (425)
T ss_pred CCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCC----
Confidence 456777766444432 2456666777888532 2222 4577888999998886432 1222
Q ss_pred cccHHHHHHHhhhCCCcEEEec
Q 016064 303 MMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 303 kiGT~~lAl~Ak~~~vPvyV~a 324 (396)
|. ..+=|-.+|+||++.-
T Consensus 334 --g~--~~lEAma~G~PVI~g~ 351 (425)
T PRK05749 334 --GH--NPLEPAAFGVPVISGP 351 (425)
T ss_pred --CC--CHHHHHHhCCCEEECC
Confidence 21 1366778899999743
No 331
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=38.82 E-value=3.2e+02 Score=28.10 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=52.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-HHHH-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-LRLA-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-~~la-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
.+++|.|.+..+..++....+.|. +|++. .|.+.| ..+. ..+...|+.++++.. ..+...+ ++.++|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~Gd--~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPDD--LIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 466666655555555544444343 45543 466655 3443 334456888888752 2333334 455556554
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. ---..|.++.. ..++-+|++++++|+|
T Consensus 146 s-P~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 T-PSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred C-CCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 1 11223444432 3577788999887665
No 332
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=38.79 E-value=4.1e+02 Score=26.49 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=46.0
Q ss_pred ceEEeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhH--HHHHHHHhCCCCEEEEcch---------HHHHhccc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGL--RLANELAKLDVPVKLLIDS---------AVAYTMDE 283 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~--~la~~L~~~GI~vtlI~Ds---------av~~~m~~ 283 (396)
.+++| +++......+..+.. -++.-+|++.+ |..-+. .+.......|+++.++.-. .+...+..
T Consensus 79 ~v~~~-~~~t~~l~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 155 (397)
T TIGR01976 79 EVVFG-ANATSLTFLLSRAISRRWGPGDEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP 155 (397)
T ss_pred eEEEe-CCHHHHHHHHHHHHHhcCCCCCEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC
Confidence 34444 444444343333331 12334677654 332222 1223345678888776421 22223332
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-+++++-...-...|.+.. --.++-+|+++++.++|
T Consensus 156 ~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 191 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVV 191 (397)
T ss_pred CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 2233332222233444332 34577788888887766
No 333
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=38.70 E-value=2.4e+02 Score=26.99 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHhhccccCceEEeecCh--HHHHHHHHHHHHCC-CeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccC
Q 016064 208 LSQDFIFDGCTILVHGFS--RVVMEVLKMAAQNK-KLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEV 284 (396)
Q Consensus 208 ~a~~~I~dg~~ILT~~~S--~~V~~~L~~A~~~g-k~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~v 284 (396)
.+..+|+||++|..=|+. +.=..++....++| |.++++-........| ...|...| .+
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G----------------~V 71 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAG----------------QV 71 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCC----------------CE
Confidence 345689999999987753 44455555555555 6688885432211112 23344444 23
Q ss_pred CEEEEcc---------eeEeecCCe---eccccHHHHHHHhhhCCCcEEEe
Q 016064 285 DMVFVGA---------DGVVESGGI---INMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 285 d~VlvGA---------d~V~~NG~v---~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
.+++.|- .....+|.+ .-..||..-.+-|-..|+|++..
T Consensus 72 kr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 72 RKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred eEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 3333320 011112222 23679999999999999998764
No 334
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=38.63 E-value=3.5e+02 Score=27.37 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=50.4
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEE--------------EEcchHHHHhcc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVK--------------LLIDSAVAYTMD 282 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vt--------------lI~Dsav~~~m~ 282 (396)
+|...|+ +.+-+.+.++..+...+++. +.++.|. ....++++ .|.++. +........++.
T Consensus 3 kVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~-~~~~la~~---~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 3 KVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPD-YEARVAVE---KGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred EEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChH-HHHHHHHh---cCCCccccCccccccccCCceEEcCChhHhhc
Confidence 5677788 44444444554445678877 6665542 12233332 343311 111111223335
Q ss_pred cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 283 EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
++|.|+..+ ..--+...+..+..+|++|+.-++...
T Consensus 78 ~vDVVIdaT----------~~~~~~e~a~~~~~aGk~VI~~~~~~~ 113 (341)
T PRK04207 78 KADIVVDAT----------PGGVGAKNKELYEKAGVKAIFQGGEKA 113 (341)
T ss_pred cCCEEEECC----------CchhhHHHHHHHHHCCCEEEEcCCCCC
Confidence 666666543 222345566677778999999887644
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.62 E-value=2.2e+02 Score=29.50 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH---HHhcccCCEEEEcc
Q 016064 234 MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV---AYTMDEVDMVFVGA 291 (396)
Q Consensus 234 ~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav---~~~m~~vd~VlvGA 291 (396)
.+.++| .+|.+.|.++...=..+...|.+.|+.+..-.+... .....+.|.|+++.
T Consensus 18 ~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 18 LLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred HHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 344445 578889987765433445668888988765433321 13457788888844
No 336
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=38.01 E-value=2.2e+02 Score=28.59 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCCEEEEc-------ch-HHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhC
Q 016064 257 RLANELAKLDVPVKLLI-------DS-AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSM 316 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~-------Ds-av~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~ 316 (396)
+.++.|.+.||++++|. |. .+...+++...|+ +++++....-.|......++.+.
T Consensus 218 eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~ 280 (327)
T PRK09212 218 EAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEA 280 (327)
T ss_pred HHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhC
Confidence 33455555666666554 22 3455567777776 46667777777888888887763
No 337
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=38.01 E-value=2.9e+02 Score=28.34 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=66.4
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCC-CeeEEE----EeCCCCCch--------h----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK-KLFRVL----CTEGRPDRS--------G----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~Vi----V~EsrP~~e--------G----~~la~~L~~~G- 266 (396)
++.-+.+.+.+ .+|+..|-+++--.+++.....| +++.++ |.+|.-..| | ..+++.|.+.+
T Consensus 31 ~g~~~q~~l~~-~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np 109 (370)
T PRK05600 31 FGIEQQERLHN-ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP 109 (370)
T ss_pred hCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC
Confidence 44444555554 57888898887666666666667 455555 222221111 2 23466676653
Q ss_pred -CCEEEEcc----hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 -VPVKLLID----SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 -I~vtlI~D----sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+.. ..+..+++++|.|+-+.|..-. -+.+.-+|..+++|++-.
T Consensus 110 ~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~---------r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 110 DIRVNALRERLTAENAVELLNGVDLVLDGSDSFAT---------KFLVADAAEITGTPLVWG 162 (370)
T ss_pred CCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 55555542 2344567899999988887432 456667789999998754
No 338
>PLN02509 cystathionine beta-lyase
Probab=37.97 E-value=2.8e+02 Score=29.42 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=48.9
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHH-HHHHhCCCCEEEEcch---HHHHhcc-cCCEEEEcc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLA-NELAKLDVPVKLLIDS---AVAYTMD-EVDMVFVGA 291 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la-~~L~~~GI~vtlI~Ds---av~~~m~-~vd~VlvGA 291 (396)
.|++-|....+ ..+..+.+.|. +|++ +.|.+.|. .+. ..+...|+.+..+... .+...+. +..+|++-
T Consensus 151 ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~le- 224 (464)
T PLN02509 151 AFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLE- 224 (464)
T ss_pred EEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEE-
Confidence 44444433333 33444444454 5665 34566553 333 4467789988876432 2223332 33333331
Q ss_pred eeEeecCCeeccccHH----HHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMGTY----QIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiGT~----~lAl~Ak~~~vPvyV 322 (396)
...|..|.. .++-+|++++++++|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 244555543 366778999998877
No 339
>PRK07505 hypothetical protein; Provisional
Probab=37.96 E-value=4.4e+02 Score=26.63 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=55.1
Q ss_pred ceEEeecChHHHHHHHHHHHH---CCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEc--c-hHHHHhcccCCEEEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQ---NKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLI--D-SAVAYTMDEVDMVFV 289 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~---~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~--D-sav~~~m~~vd~Vlv 289 (396)
+.+++.+.+..++.+|+-+.. .+.+-.|++.+. ...|.-. ...+...+.++..++ | ..+...+..-++.++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 677666777777777765442 112334555543 1223211 123333455666654 2 234444432234444
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
=.+.+...|++.. -..+.-+|+++++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 4567778887776 35677788999876654
No 340
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=37.89 E-value=3.5e+02 Score=27.52 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 266 DVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 266 GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+..+..+.+. +..+|..+|.++.-+ ||..+ =|-.+|+|++++-
T Consensus 251 ~~~v~~~~~~-~~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~y 293 (385)
T TIGR00215 251 DLQLHLIDGD-ARKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVGY 293 (385)
T ss_pred CCcEEEECch-HHHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEEE
Confidence 4566655553 456888999888765 66654 5677899999973
No 341
>PRK08960 hypothetical protein; Provisional
Probab=37.86 E-value=2.6e+02 Score=28.10 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=49.1
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-h---------HHHHhcc
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-S---------AVAYTMD 282 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-s---------av~~~m~ 282 (396)
+..+.+++|.|-+..+..++......| -+|++. .|.+.+..... ...|..+..++. . .+-..+.
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFL--RLVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHH--HhcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 455678888888877666554443333 355543 36555544322 234555554431 1 1111122
Q ss_pred -cCCEEEEcceeEeecCCeeccccHH-------HHHHHhhhCCCcEEE
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTY-------QIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~-------~lAl~Ak~~~vPvyV 322 (396)
+..++++ .| .-|..|+. .++-+|+++++.+++
T Consensus 164 ~~~~~i~i------~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 164 ADTVGALV------AS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred ccceEEEE------EC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3333332 22 23566653 566678888876654
No 342
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.82 E-value=1.5e+02 Score=30.85 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred cCceEEeecChHHHHHH-HHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEccee
Q 016064 215 DGCTILVHGFSRVVMEV-LKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~-L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~ 293 (396)
++..|+.+|-..+=... .+.+.+.| .+|++.|.++.. . ..+|.+.||.+.+ .. .. ..+..+|.|+++.--
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~---~-~~~l~~~gi~~~~-~~-~~-~~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESA---V-TQRLLELGAIIFI-GH-DA-ENIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCCh---H-HHHHHHCCCEEeC-CC-CH-HHCCCCCEEEECCCC
Confidence 45567777765543442 22233334 678889988763 2 3458888987765 22 11 234578888776421
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-. +.+.-..|++.++|++-
T Consensus 77 -~~---------~~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 77 -PD---------DNPELVAARELGIPVVR 95 (461)
T ss_pred -CC---------CCHHHHHHHHCCCcEEe
Confidence 11 22344555666666654
No 343
>PRK02478 Maf-like protein; Reviewed
Probab=37.78 E-value=2.2e+02 Score=26.74 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCC-------CchhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcc
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRP-------DRSGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGA 291 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP-------~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGA 291 (396)
|.|..=..+|..+ |-.|.|+ +-|+.. ......++..|++.+- -.+.. .-+.+++||
T Consensus 9 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~ivI~a 75 (199)
T PRK02478 9 SKSPFRRALLENA---GLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKA----------IDVSERFPGALVIGC 75 (199)
T ss_pred CCCHHHHHHHHHC---CCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHH----------HHHHHHCCCCEEEEe
Confidence 3343333455443 8889988 345421 2335677788776541 11111 236799999
Q ss_pred eeEe-ecCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 292 DGVV-ESGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~-~NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
|.|. -||.++.|-.+..-| ++-+-.|.+..|
T Consensus 76 DTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V 109 (199)
T PRK02478 76 DQTMSLGDEVFHKPKDMEEARRHLQKLSGKTHQL 109 (199)
T ss_pred CeEEEECCEEecCCCCHHHHHHHHHHhcCCCcEE
Confidence 9976 699999999998766 344445554443
No 344
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.76 E-value=1.8e+02 Score=22.33 Aligned_cols=52 Identities=21% Similarity=0.131 Sum_probs=31.8
Q ss_pred EEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCC----ch-hHHHHHHHHhCCCCEE
Q 016064 219 ILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPD----RS-GLRLANELAKLDVPVK 270 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~----~e-G~~la~~L~~~GI~vt 270 (396)
|+.+|.+-+-..+-..+.+.|++..++....++. .+ ...+.+.|.+.||++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 5677777766666666666677666655555544 11 3344667888876543
No 345
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=37.76 E-value=4e+02 Score=26.51 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=57.2
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEE-EeCCCCCchhHHHHHHHHhCCCCEEEE-cchHHHHhcccCCEEEEcceeEe
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVL-CTEGRPDRSGLRLANELAKLDVPVKLL-IDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~Vi-V~EsrP~~eG~~la~~L~~~GI~vtlI-~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
.|..+|....-...+....+ .+.+++. |.+..|...|..+++ +.|+++++- .+..+ -.+++|.|++.+-.
T Consensus 3 rVAIIG~G~IG~~h~~~ll~-~~~~elvaV~d~d~es~~la~A~---~~Gi~~~~~~~e~ll--~~~dIDaV~iaTp~-- 74 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR-SEHLEMVAMVGIDPESDGLARAR---ELGVKTSAEGVDGLL--ANPDIDIVFDATSA-- 74 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh-CCCcEEEEEEeCCcccHHHHHHH---HCCCCEEECCHHHHh--cCCCCCEEEECCCc--
Confidence 35555643322233344443 4567766 667777776765554 468887652 12211 12689999987521
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
--....+..|.++|++|+...+..
T Consensus 75 --------~~H~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 --------KAHARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred --------HHHHHHHHHHHHcCCEEEECCccc
Confidence 123678888999999999888776
No 346
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=37.71 E-value=1.9e+02 Score=25.25 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHCCCeeEEEEeCCCCCc--hhHHHHHHHHhC---CCCEEEEcch
Q 016064 225 SRVVMEVLKMAAQNKKLFRVLCTEGRPDR--SGLRLANELAKL---DVPVKLLIDS 275 (396)
Q Consensus 225 S~~V~~~L~~A~~~gk~f~ViV~EsrP~~--eG~~la~~L~~~---GI~vtlI~Ds 275 (396)
+..+...|..|.++|.+++|++....-.. ........|.+. ||++..+...
T Consensus 52 ~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 107 (176)
T cd00138 52 GPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRALLDIGVRVFLIRTD 107 (176)
T ss_pred chHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHhhcCceEEEEEcCC
Confidence 55788889899888999998877654333 334556777765 7877766543
No 347
>PRK00648 Maf-like protein; Reviewed
Probab=37.54 E-value=2.6e+02 Score=26.00 Aligned_cols=89 Identities=22% Similarity=0.182 Sum_probs=52.9
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE-E---eCCC-CCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-e
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL-C---TEGR-PDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-E 296 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi-V---~Esr-P~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~ 296 (396)
|.|..=..+|+.+ |-.|+|+ . -|+. +...-..++..|+..+-. ++..-+ .=+.+++|||.|. -
T Consensus 9 S~SprR~elL~~~---g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~-------~v~~~~-~~~~~VI~aDTvV~~ 77 (191)
T PRK00648 9 SSSPRRKEILEGF---RIPFEVVPSPFVEESYPYSLDPEEITLELARLKAE-------AVRSDL-FPDELIITADTIVWY 77 (191)
T ss_pred CCCHHHHHHHHHC---CCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhh-CCCCEEEEeCeEEEE
Confidence 3344434455443 8889988 3 2332 223345677777765410 111111 2367999999976 5
Q ss_pred cCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 297 SGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 297 NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
||.++.|-.+..-| ++.+-.|....|
T Consensus 78 ~g~ilgKP~~~~eA~~~L~~lsG~~h~v 105 (191)
T PRK00648 78 DGKVLGKPKDEEEAVEMLRTLSGKTHEV 105 (191)
T ss_pred CCEEeCCCCCHHHHHHHHHHhCCCCeEE
Confidence 99999999998766 444555655544
No 348
>PLN02242 methionine gamma-lyase
Probab=37.44 E-value=2.6e+02 Score=29.09 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=51.3
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHH-HHHHh-CCCCEEEEc--c-hHHHHhccc--CCEEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLA-NELAK-LDVPVKLLI--D-SAVAYTMDE--VDMVF 288 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la-~~L~~-~GI~vtlI~--D-sav~~~m~~--vd~Vl 288 (396)
..++|-|.+..+..+|....+.|. +|++.+ |.+.|. .+. ..+.+ .|++++.+. | ..+...+.. ...|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 456666666666666655554454 555443 555443 333 23333 788887664 2 344444543 33333
Q ss_pred EcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 289 VGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 289 vGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+- .---..|.+.. -..++-+|++++++++|
T Consensus 169 le-sp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FE-SISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred Ee-cCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 32 11112333331 23667788999988876
No 349
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.37 E-value=5e+02 Score=27.03 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=55.2
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~~vd~VlvGA 291 (396)
.|.+++.++.+..+..+.+-..+-|-...++++.+.+..--..+.+.+.+.+.++.++.+ ..+...+++. ++
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577888888877765555555555766655566554443233344445666666665554 3344444332 22
Q ss_pred eeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 292 DGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 292 d~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
|-++.| ..-..+|++.++|++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333222 223577899999998665
No 350
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=37.32 E-value=5.2e+02 Score=27.27 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=73.4
Q ss_pred CCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHH
Q 016064 153 TTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVL 232 (396)
Q Consensus 153 Pt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L 232 (396)
|.++.+.+. +.|.+.+.+.+..+. .+.+ .++-....+.+.+....++ .|.++..+|.+..+.++-
T Consensus 257 ~~P~G~~~T-~~~l~~ia~~~g~~~------~e~i-------~~er~~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~ 321 (454)
T cd01973 257 PTPIGIKNT-DAFLQNIKELTGKPI------PESL-------VRERGIAIDALADLAHMFF-ANKKVAIFGHPDLVIGLA 321 (454)
T ss_pred CCCcChHHH-HHHHHHHHHHHCCCC------CHHH-------HHHHHHHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHH
Confidence 456777664 556666665543111 1111 1111223344444333333 578888888887666555
Q ss_pred HHHHHCCCeeEEEEeCC-CCCchhHHHHHHHHh-CCCCEEEEcchHHH---Hhccc----CCEEEEcceeEeecCCeecc
Q 016064 233 KMAAQNKKLFRVLCTEG-RPDRSGLRLANELAK-LDVPVKLLIDSAVA---YTMDE----VDMVFVGADGVVESGGIINM 303 (396)
Q Consensus 233 ~~A~~~gk~f~ViV~Es-rP~~eG~~la~~L~~-~GI~vtlI~Dsav~---~~m~~----vd~VlvGAd~V~~NG~v~nk 303 (396)
+-..+-|-...+.++-+ .+..+.....++|.+ .+..+.++.+.-.. ..+++ +|++|-+.
T Consensus 322 ~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s------------ 389 (454)
T cd01973 322 EFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHS------------ 389 (454)
T ss_pred HHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECC------------
Confidence 54455687766655544 455555555556632 34333334432222 23322 45554322
Q ss_pred ccHHHHHHHhhhCCCcEEEec
Q 016064 304 MGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 304 iGT~~lAl~Ak~~~vPvyV~a 324 (396)
.-.-+|++.++|++.+.
T Consensus 390 ----~~~~~A~~~gip~~~~g 406 (454)
T cd01973 390 ----KGRYIAIDNNIPMVRVG 406 (454)
T ss_pred ----ccHHHHHHcCCCEEEec
Confidence 22457889999998764
No 351
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=37.29 E-value=70 Score=26.93 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=60.8
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CCCCEEEEcchHHHHhcccCCEEEEcceeEee
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LDVPVKLLIDSAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~ 296 (396)
+|...|-++.+-.-|.+...+...+++..+-++....|..+...... .++.---+.+ .-....+++|.||+..+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dvvf~a~~~--- 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPEELSDVDVVFLALPH--- 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGHHHTTESEEEE-SCH---
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cchhHhhcCCEEEecCch---
Confidence 36677766666555555554477788774444434667777655542 2232222222 222333899999987432
Q ss_pred cCCeeccccHHHHHHHhhhCCCcEEEeccccccccccc
Q 016064 297 SGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYP 334 (396)
Q Consensus 297 NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p 334 (396)
--+..++-.+...|++|+=++..|.+.+..|
T Consensus 77 -------~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~ 107 (121)
T PF01118_consen 77 -------GASKELAPKLLKAGIKVIDLSGDFRLDDDVP 107 (121)
T ss_dssp -------HHHHHHHHHHHHTTSEEEESSSTTTTSTTSE
T ss_pred -------hHHHHHHHHHhhCCcEEEeCCHHHhCCCCCC
Confidence 1123344444667888888888888877544
No 352
>PLN00175 aminotransferase family protein; Provisional
Probab=37.24 E-value=4.5e+02 Score=26.90 Aligned_cols=99 Identities=8% Similarity=0.074 Sum_probs=50.8
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---------hHHHHhc-ccCCE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---------SAVAYTM-DEVDM 286 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---------sav~~~m-~~vd~ 286 (396)
.+++|.|.+..+..++......| -+|++.+ |.+.+.. ..+...|.++..++- ..+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYE--ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHH--HHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 47777777776655554443334 3566654 6665544 334456877776642 1222222 34444
Q ss_pred EEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 287 VFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 287 VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
|++. .-=-+.|.++++-=-..++-+|+++++.+++
T Consensus 191 i~i~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 191 ILIN-TPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred EEec-CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 4432 1112233333333233577788888875553
No 353
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=37.08 E-value=3.4e+02 Score=27.18 Aligned_cols=98 Identities=4% Similarity=-0.086 Sum_probs=48.6
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HH-HHhcccCC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AV-AYTMDEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av-~~~m~~vd 285 (396)
.+++|.|.+..+..++......|. +|+| ++ |.+.+... .+...|.++..++.. .+ ..+.++.+
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~~-P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-LD-PGYPSHAG--GVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQAR 167 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-cC-CCCcchHH--HHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccce
Confidence 466777777766555544333343 4444 33 66655543 234467777666432 11 11113333
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
++++.- -=-+.|.++..-=-..++-+|+++++.++
T Consensus 168 ~i~l~~-p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 168 LMVLSY-PHNPTTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred EEEEeC-CCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 333321 00122444444334567778888886654
No 354
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=36.87 E-value=1.6e+02 Score=28.50 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=47.8
Q ss_pred EeecChHHHHHHHHHHHHC-CCe-eE--EEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 220 LVHGFSRVVMEVLKMAAQN-KKL-FR--VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 220 LT~~~S~~V~~~L~~A~~~-gk~-f~--ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
++.-++......++++.++ |-+ ++ ||+.-+-|.+|-..=.+.|++ +|||+|=
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 4455667666666665443 433 32 777777788765554444443 2555543
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
+-|.+.|.+|++.++||.+++-
T Consensus 183 --------Ms~~pEa~~A~~~gi~~~~i~~ 204 (245)
T PRK09136 183 --------MTGMPEAALARELGLPYACLAL 204 (245)
T ss_pred --------CcHHHHHHHHHHcCCCEEEEEE
Confidence 4578899999999999998874
No 355
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.85 E-value=1.7e+02 Score=32.07 Aligned_cols=115 Identities=23% Similarity=0.189 Sum_probs=72.8
Q ss_pred cCceEEeecChHHHHHHH-HHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC-C-CC-EEEEcc----hHHHHhccc--C
Q 016064 215 DGCTILVHGFSRVVMEVL-KMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL-D-VP-VKLLID----SAVAYTMDE--V 284 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L-~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~-G-I~-vtlI~D----sav~~~m~~--v 284 (396)
.|.+||.-|..+++-.-| ++-.+.+ .-++++. ++-.+.=..+-.+|.+. + .+ ..+|.| ..+-.+|.. +
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~-p~~i~l~-~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFN-PKEIILF-SRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEe-cCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 478999988877654433 3333322 2234444 34444445667888874 2 22 334443 456778876 9
Q ss_pred CEEEEccee----Eee----cCCeeccccHHHHHHHhhhCCCcEEEecccccccc
Q 016064 285 DMVFVGADG----VVE----SGGIINMMGTYQIALVAHSMNKPVYVAAESYKFAR 331 (396)
Q Consensus 285 d~VlvGAd~----V~~----NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~ 331 (396)
|.|+=.|-- .++ -|=--|-.||.++|-+|.+++|.-+|+-.|.|-..
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~ 381 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVN 381 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccC
Confidence 999876521 000 11123678999999999999999999999999765
No 356
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=36.83 E-value=1.2e+02 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=19.9
Q ss_pred eccccHHHHHHHhhhCCCcEEEeccc
Q 016064 301 INMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 301 ~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
.|..||..++-+|+..++.|+.++..
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 35678999999998888887766544
No 357
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=36.81 E-value=1.9e+02 Score=26.12 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=42.3
Q ss_pred CceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-c----hHHHHh-------cc
Q 016064 216 GCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-D----SAVAYT-------MD 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-D----sav~~~-------m~ 282 (396)
+.+||..|.|+.+-. +.+.+.++| .+|+++-.++...-..+..++...|-.+..+. | .++..+ ++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456777777665544 444555545 46766655555444455666766666655543 2 222222 24
Q ss_pred cCCEEEEcce
Q 016064 283 EVDMVFVGAD 292 (396)
Q Consensus 283 ~vd~VlvGAd 292 (396)
++|.|+..|-
T Consensus 83 ~id~vi~~ag 92 (248)
T PRK05557 83 GVDILVNNAG 92 (248)
T ss_pred CCCEEEECCC
Confidence 6788887763
No 358
>PRK08363 alanine aminotransferase; Validated
Probab=36.81 E-value=2.9e+02 Score=27.90 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=48.1
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-c-c--------hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-I-D--------SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~-D--------sav~~~m- 281 (396)
+....+++|.|.+..+..++....+.| -+|++.+ |.+.+... .+...|..+..+ + | ..+-..+
T Consensus 91 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~~--p~y~~~~~--~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 164 (398)
T PRK08363 91 ITPDDVRVTAAVTEALQLIFGALLDPG--DEILIPG--PSYPPYTG--LVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT 164 (398)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEcC--CCCcchHH--HHHHcCCEEEEeccccccCCcCCHHHHHhhCC
Confidence 344567788777766665554443334 3555543 55555443 223345544333 1 1 1111122
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++...|++. .-=-..|.++++.=-..++-.|+++++.+++
T Consensus 165 ~~~~~v~l~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 165 EKTKAIAVI-NPNNPTGALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred cceEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 233344432 1111223333322234566678888877764
No 359
>PRK14362 Maf-like protein; Provisional
Probab=36.72 E-value=2.9e+02 Score=26.19 Aligned_cols=87 Identities=18% Similarity=0.108 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCC--CCchhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEe-
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGR--PDRSGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVV- 295 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~Esr--P~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~- 295 (396)
|.|..=..+|+.+ |-.|+|+ +.|.. +...-..++.+|++.+- -.+.. .-+.+++|||.|.
T Consensus 18 S~SprR~eLL~~~---g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA----------~~v~~~~~~~~VI~ADTvV~ 84 (207)
T PRK14362 18 SGSPRRREFLEQM---GLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKA----------RAVAADHAGRLVIAADTVVA 84 (207)
T ss_pred CCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEE
Confidence 4444334455443 8889988 44522 22234567777776431 11111 2367999999976
Q ss_pred ecCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 296 ESGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 296 ~NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
-||.++.|-.+..=| ++-+-.|....|
T Consensus 85 ~~g~ilgKP~~~eeA~~~L~~lsG~~H~V 113 (207)
T PRK14362 85 LDGMILGKPADRADALSMLRRLAGRTHEV 113 (207)
T ss_pred eCCEEcCCCCCHHHHHHHHHHhCCCceEE
Confidence 599999999998766 444555655544
No 360
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.53 E-value=2e+02 Score=29.76 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=49.7
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh--CCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAK--LDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~--~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
+.+-+|+.+|..++=..+.+.+++.| ++|.+.|.++.. ....+|.+ .|+++.+-... ...+.++|.|++..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~--~~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD--CELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC--hHHhcCCCEEEECC
Confidence 44457777776554333333344445 578888877643 23345766 37776653211 12246789888876
Q ss_pred eeEeecCCeeccccHHHHHHHhhhCCCcEE
Q 016064 292 DGVVESGGIINMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 292 d~V~~NG~v~nkiGT~~lAl~Ak~~~vPvy 321 (396)
+|-.+ .+.-..|++.++|++
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 54433 233444455555554
No 361
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=36.49 E-value=95 Score=31.17 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=45.2
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhcc--cCCEEEEcceeE
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTMD--EVDMVFVGADGV 294 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m~--~vd~VlvGAd~V 294 (396)
+||..|.+..-..+++.|.+. .++|++++..|..-|..+|.+ -+...+ .| .++..+.+ ++|.|+.+.+.+
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad~----~~~~~~-~d~~~l~~~~~~~~id~v~~~~e~v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHR----SYVINM-LDGDALRAVIEREKPDYIVPEIEAI 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCce----EEEcCC-CCHHHHHHHHHHhCCCEEEeccCcc
Confidence 478889887777777777764 468898888887766655421 111111 23 23444444 699998887765
Q ss_pred e
Q 016064 295 V 295 (396)
Q Consensus 295 ~ 295 (396)
.
T Consensus 74 ~ 74 (380)
T TIGR01142 74 A 74 (380)
T ss_pred C
Confidence 4
No 362
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=36.47 E-value=17 Score=35.48 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHhCCCCEEEEc----chHHHHhcccCCEE-EEcceeEee-cCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 252 DRSGLRLANELAKLDVPVKLLI----DSAVAYTMDEVDMV-FVGADGVVE-SGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 252 ~~eG~~la~~L~~~GI~vtlI~----Dsav~~~m~~vd~V-lvGAd~V~~-NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
..-|.++...|.+.|+++..+. +.....+.+-++.+ -.++|.|.+ -||.++.++= .+|.+.++||+++.-
T Consensus 32 ~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K----~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 32 KAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAK----YAAFELGIPFISVPT 107 (250)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHH----HHHHHHT--EEEEES
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHH----HHHHhcCCCEEEecc
Confidence 3457788888888888887553 22222222111111 123333333 3666666655 457788999998763
No 363
>PRK12743 oxidoreductase; Provisional
Probab=36.38 E-value=2.3e+02 Score=26.43 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=45.5
Q ss_pred CceEEeecChHHHHHH-HHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-c----hHHHHhc-------c
Q 016064 216 GCTILVHGFSRVVMEV-LKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-D----SAVAYTM-------D 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~-L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-D----sav~~~m-------~ 282 (396)
+.+||..|.|+-+-.. .+...+.| .+|+++..++.....++..++...|-.+.++. | .++-.++ +
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4567777777665443 34444444 57887777776667777888888776665542 2 2222222 4
Q ss_pred cCCEEEEcc
Q 016064 283 EVDMVFVGA 291 (396)
Q Consensus 283 ~vd~VlvGA 291 (396)
++|.+|..|
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 678887765
No 364
>PRK09411 carbamate kinase; Reviewed
Probab=36.37 E-value=1.2e+02 Score=30.46 Aligned_cols=66 Identities=21% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCC----CeeEEEEeCCCCCchhHHHHHHHHhCCCC
Q 016064 198 SYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK----KLFRVLCTEGRPDRSGLRLANELAKLDVP 268 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~g----k~f~ViV~EsrP~~eG~~la~~L~~~GI~ 268 (396)
...+.+.|++ ++.+..+|+||||..-|-.++....... -.+.|.+.+|. +.=|..|.++|...|++
T Consensus 29 v~~~a~~ia~----l~~~~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 29 IASAVPALAR----LARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHHHHHH----HHHcCCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 3445555555 4445689999999999987665532211 22445555553 34478889999988864
No 365
>PRK08175 aminotransferase; Validated
Probab=36.32 E-value=3.6e+02 Score=27.15 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=53.3
Q ss_pred cccC-ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch-------HHHHhcc--
Q 016064 213 IFDG-CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS-------AVAYTMD-- 282 (396)
Q Consensus 213 I~dg-~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-------av~~~m~-- 282 (396)
+..+ .+|+|.|.+..+..++....+.|. +|++. +|.+.+..... ...|.++..++.. .+...++
T Consensus 88 ~~~~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 88 IDPESEAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred CCCCCcEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhc
Confidence 3334 578887777766555544443343 45443 56665544432 3467777766421 1222222
Q ss_pred --cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 --EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 --~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..|++. .-=-..|.+++.-=-..++-+|+++++++++
T Consensus 162 ~~~~~~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 162 YPKPKMMILG-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred cCCceEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 34444442 0001224444333336788889999997765
No 366
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.21 E-value=1.9e+02 Score=25.89 Aligned_cols=90 Identities=11% Similarity=0.206 Sum_probs=50.3
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||..|.+....+-++...+.|-...|+ + |.. ..+|.+.+ .+++....=-..-+..+|.|+...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-Ccc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999998887777777667766666 2 332 12222222 22232221111124556666654332
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.-+| ..++..|+. +.||.++.
T Consensus 81 ----~e~N----~~i~~~a~~-~~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHD-FQWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHH-CCcEEECC
Confidence 2233 567777877 46887654
No 367
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=36.14 E-value=1.5e+02 Score=28.33 Aligned_cols=99 Identities=19% Similarity=0.102 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHC---CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHh----cccCCEEEEcceeEeec
Q 016064 225 SRVVMEVLKMAAQN---KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYT----MDEVDMVFVGADGVVES 297 (396)
Q Consensus 225 S~~V~~~L~~A~~~---gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~----m~~vd~VlvGAd~V~~N 297 (396)
+...++++.+|++- +.++-|=|.=+ .+|.+.++.|.+.||+|.....-++... ...++.|=....++-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T---~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVT---AEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 44566777776542 44443334434 3899999999999999876655444333 34555554444454444
Q ss_pred CCeeccccHHHHH---HHhhhCCCcEEEeccccccc
Q 016064 298 GGIINMMGTYQIA---LVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 298 G~v~nkiGT~~lA---l~Ak~~~vPvyV~aes~Kf~ 330 (396)
|. -|-..+. -+-+.++.+.=+++.|+|=.
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r~~ 170 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFKTP 170 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecCCH
Confidence 32 2322222 22234677788888887743
No 368
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.99 E-value=78 Score=24.81 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHHhCCCCEEEEcch--HHHHhcccCCEEEEccee
Q 016064 260 NELAKLDVPVKLLIDS--AVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 260 ~~L~~~GI~vtlI~Ds--av~~~m~~vd~VlvGAd~ 293 (396)
+.+.+.|++++...-. .......++|.++++.+-
T Consensus 22 ~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i 57 (90)
T PF02302_consen 22 KALKELGIEVEVSAGSILEVEEIADDADLILLTPQI 57 (90)
T ss_dssp HHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESS
T ss_pred HHHHhccCceEEEEecccccccccCCCcEEEEcCcc
Confidence 4455666666555443 445556779999988764
No 369
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=35.94 E-value=2.6e+02 Score=27.78 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=47.9
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCee-EEEEeCCCCCchhHHHHHHHHhC-CCCEEEEcchHHHHhcccCCEEEE---
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLF-RVLCTEGRPDRSGLRLANELAKL-DVPVKLLIDSAVAYTMDEVDMVFV--- 289 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f-~ViV~EsrP~~eG~~la~~L~~~-GI~vtlI~Dsav~~~m~~vd~Vlv--- 289 (396)
|-.++..+|.......-+..+.. -+.+ +|.|- +|-...-.+++.++.+. |+++....+ .......+|.|+.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~-v~~i~~v~v~-~r~~~~a~~f~~~~~~~~~~~v~~~~~--~~eav~~aDIV~taT~ 191 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMAS-VYNPKRIRVY-SRNFDHARAFAERFSKEFGVDIRPVDN--AEAALRDADTITSITN 191 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHh-cCCCCEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEecC
Confidence 33455555554444333332222 2222 33343 44444456778888875 888887644 4455688998876
Q ss_pred cceeEe-----ecCCeeccccHH
Q 016064 290 GADGVV-----ESGGIINMMGTY 307 (396)
Q Consensus 290 GAd~V~-----~NG~v~nkiGT~ 307 (396)
..+-++ .-|.-+|-+|++
T Consensus 192 s~~P~~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 192 SDTPIFNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred CCCcEecHHHcCCCceEEecCCC
Confidence 223332 335556666654
No 370
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=35.88 E-value=2.3e+02 Score=23.27 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.3
Q ss_pred EeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 246 CTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 246 V~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
+.-++-..+-.++++.+.+.|+++..|++..-..+-+-+|.++.-
T Consensus 67 iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~ 111 (139)
T cd05013 67 ISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLV 111 (139)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEc
Confidence 443333344567788999999999999987655555667777754
No 371
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=35.61 E-value=2.7e+02 Score=25.52 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHCCCeeEEEEeCCCCC---chhHHHHHHHHhCCCCEEEEcc----hHHHHhcccCCEEEEcceeEee
Q 016064 224 FSRVVMEVLKMAAQNKKLFRVLCTEGRPD---RSGLRLANELAKLDVPVKLLID----SAVAYTMDEVDMVFVGADGVVE 296 (396)
Q Consensus 224 ~S~~V~~~L~~A~~~gk~f~ViV~EsrP~---~eG~~la~~L~~~GI~vtlI~D----sav~~~m~~vd~VlvGAd~V~~ 296 (396)
....+.+.|.+|.+++-..=|+.++| |+ ..+..+.+.|.+..+||....+ |+-.++.--+|.+++.-.+.+.
T Consensus 14 ~~~~l~~~l~~a~~~~~~~ivl~ins-pGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG 92 (178)
T cd07021 14 LAAFVERALKEAKEEGADAVVLDIDT-PGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIG 92 (178)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEC-cCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEe
Confidence 34557888888887664444444444 44 5678889999999999866554 2223344678888887666666
Q ss_pred cCCeec
Q 016064 297 SGGIIN 302 (396)
Q Consensus 297 NG~v~n 302 (396)
.-+++.
T Consensus 93 ~~~~v~ 98 (178)
T cd07021 93 AAEPIP 98 (178)
T ss_pred cCeeEc
Confidence 544543
No 372
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=35.57 E-value=2.3e+02 Score=26.33 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=51.4
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
.|..||..|.+......++...+.|.++.|+ . |.. ...+ ..+.+.| .+++....--...+..+|.|+...+.=
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI--s--~~~-~~~l-~~l~~~~-~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVI--S--PEL-TENL-VKLVEEG-KIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEE--c--CCC-CHHH-HHHHhCC-CEEEEecCCChhhcCCceEEEEcCCCH
Confidence 5789999999998887777777767544444 3 222 1122 2344433 245544322233456677766654322
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
- +| ..++..|+. +++|.++.
T Consensus 82 e-----lN----~~i~~~a~~-~~lvn~~d 101 (202)
T PRK06718 82 R-----VN----EQVKEDLPE-NALFNVIT 101 (202)
T ss_pred H-----HH----HHHHHHHHh-CCcEEECC
Confidence 2 22 345556643 67776643
No 373
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.46 E-value=63 Score=29.73 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeec-CCeeccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVES-GGIINMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~N-G~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
..+++.|+..|++|+++.+.. -+.++|.+|++--.-... .....+.|-.....-+...++|++-+|--+-+
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~~---~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Ql 84 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDPE---EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQL 84 (199)
T ss_pred HHHHHHHHHCCCcEEEEcChH---HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHH
Confidence 466889999999999886532 246788887742100000 00012234333333334679999987755443
No 374
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.37 E-value=1.8e+02 Score=29.43 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=40.0
Q ss_pred eEEeecC-hHHHHHHHHHHHHCCCeeEEEEeCCCCCchh--HHHHHHHHhCCCCEEEEcchH
Q 016064 218 TILVHGF-SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG--LRLANELAKLDVPVKLLIDSA 276 (396)
Q Consensus 218 ~ILT~~~-S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG--~~la~~L~~~GI~vtlI~Dsa 276 (396)
+|.|++. ...+...++.|++.|....+.+..+...... .++++.+.+.|.++.+|.|++
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 4666664 3467778888888787666666655433222 345777888899999999875
No 375
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=35.18 E-value=1.2e+02 Score=27.15 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=46.4
Q ss_pred cCceEEeec--ChHHHHHHHHHHHHCCCeeEEEEeCC--CCCc-hhHHHHH-HHHhCCCCEEEEcchHHHHhcccCCEEE
Q 016064 215 DGCTILVHG--FSRVVMEVLKMAAQNKKLFRVLCTEG--RPDR-SGLRLAN-ELAKLDVPVKLLIDSAVAYTMDEVDMVF 288 (396)
Q Consensus 215 dg~~ILT~~--~S~~V~~~L~~A~~~gk~f~ViV~Es--rP~~-eG~~la~-~L~~~GI~vtlI~Dsav~~~m~~vd~Vl 288 (396)
+|.+|.-.| +++++..++.-+.+-|-.+.++..++ -|.. +-...++ ...+.|-++++..| +...++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~--~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDD--IEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESS--HHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeC--HHHhcCCCCEEE
Confidence 466777777 47888888877777788877777766 2331 1222233 34455877777744 556677777765
Q ss_pred E
Q 016064 289 V 289 (396)
Q Consensus 289 v 289 (396)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 376
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=35.15 E-value=2e+02 Score=28.34 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=60.1
Q ss_pred cCceEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE----cc-hHHHHhcccCCEEE
Q 016064 215 DGCTILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL----ID-SAVAYTMDEVDMVF 288 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI----~D-sav~~~m~~vd~Vl 288 (396)
.|.+||..|.++.+-.-|.+ ..++|...+|++....+.. ...+...+... .++++ .| ..+..++.++|.||
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~~~~~~~--~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-QWEMQQKFPAP--CLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-HHHHHHHhCCC--cEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 36788888988876554433 3444433567766543322 12233333222 33332 22 44566678888887
Q ss_pred EcceeEe-e--cCC-----eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 289 VGADGVV-E--SGG-----IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 289 vGAd~V~-~--NG~-----v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
--|-... . +.. -.|-.||..+.-+|+..+++-+|...+
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 6552210 0 000 145679999999999988765554444
No 377
>PLN00203 glutamyl-tRNA reductase
Probab=35.13 E-value=4.5e+02 Score=28.47 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=45.4
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
+.+|+.+|....-..+++.+...|- -+|+|.. |.......++.++. |..+.+++-......+.++|.||...
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEcc
Confidence 6799999998877777777665552 2455554 33233344444442 55555555455666778999988754
No 378
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=35.13 E-value=5.9e+02 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016064 179 DFNSARSRLIERAEKFGEISYKARKIIAMLSQ 210 (396)
Q Consensus 179 ~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~ 210 (396)
.|-..|+.|++..+.|+..+..-..+|...-.
T Consensus 183 ~Fl~yKd~Li~YL~~Fv~~L~r~~~~I~~~l~ 214 (486)
T PF09660_consen 183 AFLAYKDALIDYLRRFVQDLQRRAPRIAAALR 214 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999888877778876543
No 379
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=34.90 E-value=5.2e+02 Score=26.56 Aligned_cols=136 Identities=21% Similarity=0.341 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecC----hHHHHHHHHHHHHCCCeeEEEEeCCCCCch-hHHH
Q 016064 184 RSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGF----SRVVMEVLKMAAQNKKLFRVLCTEGRPDRS-GLRL 258 (396)
Q Consensus 184 k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~----S~~V~~~L~~A~~~gk~f~ViV~EsrP~~e-G~~l 258 (396)
++.++..++.|.. .|.+++..+|.+ -|..|+.+.+ ++++...+.+|..+ .+-|++.|+.=..+ -..|
T Consensus 168 ~~VllaA~DTFRA---aAiEQL~~w~er---~gv~vI~~~~G~DpAaVafDAi~~Akar--~~DvvliDTAGRLhnk~nL 239 (340)
T COG0552 168 KSVLLAAGDTFRA---AAIEQLEVWGER---LGVPVISGKEGADPAAVAFDAIQAAKAR--GIDVVLIDTAGRLHNKKNL 239 (340)
T ss_pred CeEEEEecchHHH---HHHHHHHHHHHH---hCCeEEccCCCCCcHHHHHHHHHHHHHc--CCCEEEEeCcccccCchhH
Confidence 3445555666644 355666666654 2555555332 44678888888764 46677777654433 2455
Q ss_pred HHHHHhC------CCC-----EEEEcchHHHHh-c---------ccCCEEEE-cceeEeecCCeeccccHHHHHHHhhhC
Q 016064 259 ANELAKL------DVP-----VKLLIDSAVAYT-M---------DEVDMVFV-GADGVVESGGIINMMGTYQIALVAHSM 316 (396)
Q Consensus 259 a~~L~~~------GI~-----vtlI~Dsav~~~-m---------~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~Ak~~ 316 (396)
..+|.+- -++ +-++.|+..|.- + -.+|-+++ =.|+ .+-||++ --+++.+
T Consensus 240 M~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDg-tAKGG~i--------l~I~~~l 310 (340)
T COG0552 240 MDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDG-TAKGGII--------LSIAYEL 310 (340)
T ss_pred HHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEeccc-CCCccee--------eeHHHHh
Confidence 6677642 233 555557665542 2 12343333 3442 2223322 2358899
Q ss_pred CCcEEEecccccccccccCC
Q 016064 317 NKPVYVAAESYKFARLYPLD 336 (396)
Q Consensus 317 ~vPvyV~aes~Kf~~~~p~~ 336 (396)
++|++.++=--+.++..|++
T Consensus 311 ~~PI~fiGvGE~~~DL~~Fd 330 (340)
T COG0552 311 GIPIKFIGVGEGYDDLRPFD 330 (340)
T ss_pred CCCEEEEeCCCChhhccccC
Confidence 99999887655655554544
No 380
>PLN02735 carbamoyl-phosphate synthase
Probab=34.83 E-value=2.5e+02 Score=33.27 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=57.5
Q ss_pred cCceEEeecC--hHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc---c---hHHHHhc-ccCC
Q 016064 215 DGCTILVHGF--SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI---D---SAVAYTM-DEVD 285 (396)
Q Consensus 215 dg~~ILT~~~--S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~---D---sav~~~m-~~vd 285 (396)
.|.++++.+. -.-+..+.+...+ ..|+++.+++ .++.|.+.||+|+.+. + ..+-.+. +++|
T Consensus 972 ~g~vliSv~d~~K~~~~~~a~~L~~--lG~~i~aT~G--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~ 1041 (1102)
T PLN02735 972 SGTVFISLNDLTKPHLVPIARGFLE--LGFRIVSTSG--------TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQ 1041 (1102)
T ss_pred CCeEEEEEecCCchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeE
Confidence 3455666654 2233444444443 3477776653 5688889999987763 1 2222222 6789
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+||--. +|.-.-..-.|.+-.+|=.++||++--.
T Consensus 1042 ~vin~~-----~~~~~~~~d~~~iRr~a~~~~ip~~t~~ 1075 (1102)
T PLN02735 1042 LMVITS-----SGDALDQKDGRQLRRMALAYKVPIITTV 1075 (1102)
T ss_pred EEEECC-----CCccccccccHHHHHHHHHcCCCEEecH
Confidence 988532 3432223456889999999999998533
No 381
>PRK05942 aspartate aminotransferase; Provisional
Probab=34.71 E-value=3.8e+02 Score=27.01 Aligned_cols=99 Identities=7% Similarity=-0.028 Sum_probs=51.0
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc-ccCC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM-DEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m-~~vd 285 (396)
.+++|.|.+..+..++....+.|. +|++. .|.+.+...+ +...|+++..++.. .+-..+ +++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 466677777766655554444343 45544 4666654432 23468777666321 111111 3455
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+++. .-=-..|.++.+-=-..++-.|+++++.+++
T Consensus 173 ~i~l~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 173 ILYFN-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred EEEEc-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 55543 1112334444444344677778899886654
No 382
>PRK13936 phosphoheptose isomerase; Provisional
Probab=34.70 E-value=3.7e+02 Score=24.77 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=27.7
Q ss_pred HhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 279 YTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 279 ~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
..++.-|.+|+ |...|. .-=+..++-.||+.|+|++.++..
T Consensus 107 ~~~~~~Dv~i~----iS~sG~---t~~~~~~~~~ak~~g~~iI~IT~~ 147 (197)
T PRK13936 107 ALGQPGDVLLA----ISTSGN---SANVIQAIQAAHEREMHVVALTGR 147 (197)
T ss_pred HhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCeEEEEECC
Confidence 34566777775 333443 222566788999999999998853
No 383
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.63 E-value=1.3e+02 Score=23.64 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=41.8
Q ss_pred EEeCCCCCchhHHHHHHHHhCCC-CEEEEcchHHHH-hc--ccCCEEEEcceeEeecCCeeccccHHHHHHHhhh-CCCc
Q 016064 245 LCTEGRPDRSGLRLANELAKLDV-PVKLLIDSAVAY-TM--DEVDMVFVGADGVVESGGIINMMGTYQIALVAHS-MNKP 319 (396)
Q Consensus 245 iV~EsrP~~eG~~la~~L~~~GI-~vtlI~Dsav~~-~m--~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~-~~vP 319 (396)
+|+|..|.. -..+.+.|...|+ .|....+..-+. .+ ...|.++++. ..-..-|-..+..+.+. .++|
T Consensus 2 livd~~~~~-~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~-------~~~~~~~~~~~~~i~~~~~~~~ 73 (112)
T PF00072_consen 2 LIVDDDPEI-RELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDL-------ELPDGDGLELLEQIRQINPSIP 73 (112)
T ss_dssp EEEESSHHH-HHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEES-------SSSSSBHHHHHHHHHHHTTTSE
T ss_pred EEEECCHHH-HHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEe-------eecccccccccccccccccccc
Confidence 344444432 2233455556777 666666543322 22 3466676663 33344565556655554 4899
Q ss_pred EEEeccccc
Q 016064 320 VYVAAESYK 328 (396)
Q Consensus 320 vyV~aes~K 328 (396)
+++++....
T Consensus 74 ii~~t~~~~ 82 (112)
T PF00072_consen 74 IIVVTDEDD 82 (112)
T ss_dssp EEEEESSTS
T ss_pred EEEecCCCC
Confidence 999885543
No 384
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=34.58 E-value=1.8e+02 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHhhh-CCCcEEEe
Q 016064 306 TYQIALVAHS-MNKPVYVA 323 (396)
Q Consensus 306 T~~lAl~Ak~-~~vPvyV~ 323 (396)
-..+|++|++ +|+|-+++
T Consensus 80 N~i~~~la~~~~gv~~via 98 (225)
T COG0569 80 NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 3567777755 89997765
No 385
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=34.49 E-value=4.1e+02 Score=27.08 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=52.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
..|++-+.+..+..++ .+.+.|. +|++. .|.+.|. .+ ...+...|++++.+.. ..+...+ ++..+|++-
T Consensus 67 ~al~~~SG~~Al~~~l-~~l~pGd--~Vi~~--~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~le 141 (380)
T PRK06176 67 KGFAFASGLAGIHAVF-SLFQSGD--HVLLG--DDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLE 141 (380)
T ss_pred CEEEECCHHHHHHHHH-HHcCCCC--EEEEc--CCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEE
Confidence 3555555555555444 4444443 56654 3444443 33 4456778999887642 2344444 355556652
Q ss_pred ceeEe-ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVV-ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~-~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
... ..|.+.. --.++-+|++++++++|
T Consensus 142 --sP~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 142 --TPSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred --CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 111 1232222 33688889999998877
No 386
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=34.48 E-value=99 Score=32.59 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=45.3
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCC-C-EEEEcchHHHHhc--ccCCEEEEcce
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDV-P-VKLLIDSAVAYTM--DEVDMVFVGAD 292 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI-~-vtlI~Dsav~~~m--~~vd~VlvGAd 292 (396)
.+||..+++.....+++.+++.|...-++..+..+...+.++|.+.-..|- + -.|....++-.+. .++|.|+-|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 479999999999999999998776544444443333344444432111110 1 1122223444444 46888887764
Q ss_pred eEeec
Q 016064 293 GVVES 297 (396)
Q Consensus 293 ~V~~N 297 (396)
...+|
T Consensus 83 ~lse~ 87 (472)
T PRK07178 83 FLSEN 87 (472)
T ss_pred CcccC
Confidence 34444
No 387
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=34.37 E-value=2.3e+02 Score=24.03 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=59.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC----CC-CCch----h----HHHHHHHHhC--CCCEEEEcchH-
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE----GR-PDRS----G----LRLANELAKL--DVPVKLLIDSA- 276 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E----sr-P~~e----G----~~la~~L~~~--GI~vtlI~Dsa- 276 (396)
.+|+..|-+++=-.+++.....|- ++.++ ++| .| +... | ..+++.|.+. +++++.++..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 478888887765556665555574 56665 222 22 2211 2 3446666665 56777765433
Q ss_pred ---HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 277 ---VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 277 ---v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
...+++.+|.||...|..- -...+.-.|+.+++|++.+.
T Consensus 83 ~~~~~~~~~~~d~vi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 83 EENIEELLKDYDIVIDCVDSLA---------ARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHTSSEEEEESSSHH---------HHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccCCCEEEEecCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 4455688998887665422 24467778999999998765
No 388
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=34.34 E-value=5.3e+02 Score=26.56 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=49.9
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HHH-HHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RLA-NELAKLDVPVKLLID---SAVAYTM-DEVDMVFVG 290 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~la-~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvG 290 (396)
+.|+|-+.+..+..++....+.|. +|++ ..|.+.|. .+. ..+...|+++..+.. ..+...+ ++..+|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 356666656555444444444444 4554 34655552 233 334566888887752 2343444 344444442
Q ss_pred ceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 291 Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.---..|.+.. -..++-+|++++++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 11122333321 23567778999988776
No 389
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=34.26 E-value=1.3e+02 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCCEEEEcchHHH----HhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 257 RLANELAKLDVPVKLLIDSAVA----YTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~Dsav~----~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
.++..|...|+++....|.... ..+.+=|.+|+-. -.|..- -+..++-.||++|+|+++++...
T Consensus 157 ~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS----~sG~t~---~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 157 DVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVS----HSGRTS---DVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred HHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEe----CCCCCH---HHHHHHHHHHHCCCeEEEEeCCC
Confidence 4455666677777777775433 2356677776532 224332 26678889999999999998653
No 390
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.20 E-value=3e+02 Score=28.26 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=41.1
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhccc-CCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDE-VDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~-vd~VlvGA 291 (396)
.|.+|+..|.++.=....+.+++.| .+|++.|..+.. ....+.+|.+.|+++..-.+.. .+..+ .|.|+.++
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~-~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFS-ENPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCcc-chhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECC
Confidence 3667888887774344444444445 478888765532 2234567888898765433222 12333 67666654
No 391
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=34.19 E-value=3.6e+02 Score=27.85 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=65.4
Q ss_pred CceEEeecChHHH-HHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEE-cc----hHHHHhcccCCEEE
Q 016064 216 GCTILVHGFSRVV-MEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLL-ID----SAVAYTMDEVDMVF 288 (396)
Q Consensus 216 g~~ILT~~~S~~V-~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI-~D----sav~~~m~~vd~Vl 288 (396)
+.++|..|.|+-+ +.++....+++...++.+.+-.|... .+ +.......-.++++ .| ..+......+ .|+
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~--~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQS--NLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccc--ccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 5678888887755 44555556666678999999888621 11 11111123345555 22 3344444556 344
Q ss_pred EcceeEee----c----CCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 289 VGADGVVE----S----GGIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 289 vGAd~V~~----N----G~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
.-|.+... | =.-+|--||..+--+|+..+|+.+|-+.+.-
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~ 128 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAY 128 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCce
Confidence 33322222 1 0236789999999999999999998776643
No 392
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=34.12 E-value=4.6e+02 Score=26.55 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=50.7
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCC-eeEEEEeCCCCCchhHH--HHHHHHhCCCCE----EEEc-ch-------HHHH
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKK-LFRVLCTEGRPDRSGLR--LANELAKLDVPV----KLLI-DS-------AVAY 279 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~ViV~EsrP~~eG~~--la~~L~~~GI~v----tlI~-Ds-------av~~ 279 (396)
.+++++|-|.|..+..++....+.+. .-.|++. . ..+-... +...+...|+++ ..+. +. .+..
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~-~-~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~ 163 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLE-A-KAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILD 163 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEec-C-CCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHH
Confidence 45688887777666655554333332 2234433 2 2222212 223445668876 3332 21 3333
Q ss_pred hcccC--CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 280 TMDEV--DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 280 ~m~~v--d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.+... +.-++-...+....|++.. -..++-+|++++++|+|
T Consensus 164 ~~~~~~~~t~lv~~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 164 TIEKNGDDIAVILLSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHHhcCCCeEEEEEeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 34211 1112223334443344444 34477889999998877
No 393
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.03 E-value=5.5e+02 Score=26.55 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=51.0
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH---HHhccc--CCEEEE
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV---AYTMDE--VDMVFV 289 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav---~~~m~~--vd~Vlv 289 (396)
.|..|+.++....+..+.+-+.+.|-....+++.+.-.....++...+...+++...+.+.-. ...+++ .|.+|-
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig 377 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIG 377 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEE
Confidence 577888888877666655555555766555555433222234443333335555444443223 333433 555432
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+ ..-.-+|++.++|++.++
T Consensus 378 ~----------------~~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 378 N----------------SHGRYLARDLGIPLVRVG 396 (428)
T ss_pred C----------------chhHHHHHhcCCCEEEec
Confidence 2 223467888999998655
No 394
>PLN02427 UDP-apiose/xylose synthase
Probab=34.01 E-value=1.8e+02 Score=29.26 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=58.2
Q ss_pred ceEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCC-----CCEEEE----cc-hHHHHhcccCC
Q 016064 217 CTILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLD-----VPVKLL----ID-SAVAYTMDEVD 285 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~G-----I~vtlI----~D-sav~~~m~~vd 285 (396)
.+||..|.++-+-.-|.+. .++| ..+|+++..++.. ...|...+ -.++++ .| ..+..+++.+|
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~-----~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDK-----IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchh-----hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 4788889888776655443 3332 3577777543321 12222211 123333 22 34566778899
Q ss_pred EEEEcceeEeecC--------CeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 286 MVFVGADGVVESG--------GIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 286 ~VlvGAd~V~~NG--------~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
.||=-|-.+.... --.|-.||..+.-+|++.++.|+.+..
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS 136 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 136 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 8886553221111 125778999999999888876665543
No 395
>PRK08462 biotin carboxylase; Validated
Probab=33.97 E-value=96 Score=32.14 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=45.7
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCc--hhHHHHHHHHhCCCCE---EEEcchHHHHhc--ccCCEEEE
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDR--SGLRLANELAKLDVPV---KLLIDSAVAYTM--DEVDMVFV 289 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~--eG~~la~~L~~~GI~v---tlI~Dsav~~~m--~~vd~Vlv 289 (396)
.+||..+++.....+++.|++.|- +|+++-+.+.. .+..+|-+....|-.. .|+.-.++-.+. .++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGK--EAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 589999999999999999998774 45655444433 3444433221111110 222112233322 57889998
Q ss_pred cceeEeecC
Q 016064 290 GADGVVESG 298 (396)
Q Consensus 290 GAd~V~~NG 298 (396)
|.+.+.+|+
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876444443
No 396
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=33.92 E-value=1.5e+02 Score=29.45 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=16.0
Q ss_pred CeeccccH----HHHHHHhhhCCCcEEE
Q 016064 299 GIINMMGT----YQIALVAHSMNKPVYV 322 (396)
Q Consensus 299 ~v~nkiGT----~~lAl~Ak~~~vPvyV 322 (396)
.+.|..|+ ..++-+|+++++++++
T Consensus 182 ~v~~~~G~~~~~~~l~~la~~~~~~li~ 209 (397)
T PRK06939 182 GVFSMDGDIAPLPEICDLADKYDALVMV 209 (397)
T ss_pred cCcCCCCCcCCHHHHHHHHHHhCCEEEE
Confidence 34455443 3567788999998864
No 397
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=33.75 E-value=1.4e+02 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch
Q 016064 229 MEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS 275 (396)
Q Consensus 229 ~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds 275 (396)
..+++...++....+++..+...+. |..+-.-+....=+..++.|+
T Consensus 42 ~~~~~~~~~~~~~i~~~~~~~n~G~-~~a~n~g~~~a~gd~i~~lD~ 87 (224)
T cd06442 42 AEIVRELAKEYPRVRLIVRPGKRGL-GSAYIEGFKAARGDVIVVMDA 87 (224)
T ss_pred HHHHHHHHHhCCceEEEecCCCCCh-HHHHHHHHHHcCCCEEEEEEC
Confidence 3344443333344444444443332 333323333322255555543
No 398
>PLN02591 tryptophan synthase
Probab=33.60 E-value=4.3e+02 Score=25.74 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred ceEEeecC---hHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE-EcchH----HHHhcccCC-EE
Q 016064 217 CTILVHGF---SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL-LIDSA----VAYTMDEVD-MV 287 (396)
Q Consensus 217 ~~ILT~~~---S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl-I~Dsa----v~~~m~~vd-~V 287 (396)
-++|||-| ..-+.+|+..+.+.|-. -|++.+ -|..|...+...+.+.||+... ++.+. +..+....+ ++
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipD-LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPD-LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCC-CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 36888877 44688999999987742 455554 5778889999999999997554 42333 334444432 32
Q ss_pred -EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 288 -FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 288 -lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
++|--+|.....-...--...+..+-++.++|++|=.
T Consensus 159 Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGF 196 (250)
T PLN02591 159 YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGF 196 (250)
T ss_pred EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeC
Confidence 2232223221111111123336666667799998844
No 399
>PRK01839 Maf-like protein; Reviewed
Probab=33.52 E-value=1.2e+02 Score=28.66 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=50.2
Q ss_pred ecChHHHHH-HHHHHHHCCCeeEEE---EeCCC-------CCchhHHHHHHHHhCCCCEEEEcchHHHHhc---ccCCEE
Q 016064 222 HGFSRVVME-VLKMAAQNKKLFRVL---CTEGR-------PDRSGLRLANELAKLDVPVKLLIDSAVAYTM---DEVDMV 287 (396)
Q Consensus 222 ~~~S~~V~~-~L~~A~~~gk~f~Vi---V~Esr-------P~~eG~~la~~L~~~GI~vtlI~Dsav~~~m---~~vd~V 287 (396)
.+.+|--++ +|+. .|-.|+|+ +.|.. +...-..++..|++.+-. ++..-+ ..-+.+
T Consensus 14 LAS~SprR~elL~~---~gi~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~-------~v~~~l~~~~~~~~l 83 (209)
T PRK01839 14 LASQSPRRQELLQQ---LGVRFELLLPRPDEDAEALEAELPGEAPDDYVQRVCVAKAE-------AARARLVARGLPAAP 83 (209)
T ss_pred EeCCCHHHHHHHHH---CCCCeEEeCCCCCcCccccccCCCCCCHHHHHHHHHHHHHH-------HHHHhhccccCCCCE
Confidence 344444444 4433 38889988 44531 122234566666654310 111111 123668
Q ss_pred EEcceeEe-ecCCeeccccHHHHH--HHhhhCCCcE
Q 016064 288 FVGADGVV-ESGGIINMMGTYQIA--LVAHSMNKPV 320 (396)
Q Consensus 288 lvGAd~V~-~NG~v~nkiGT~~lA--l~Ak~~~vPv 320 (396)
++|||.|. -||.++.|-.+..=| ++..-.|.+.
T Consensus 84 vI~aDTvV~~~g~IlgKP~~~eeA~~~L~~lsg~~h 119 (209)
T PRK01839 84 VLVADTTVTIDGAILGKPADAADALAMLTRLAGRTH 119 (209)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 99999966 599999999998766 3444445443
No 400
>PRK08636 aspartate aminotransferase; Provisional
Probab=33.52 E-value=4.5e+02 Score=26.56 Aligned_cols=99 Identities=7% Similarity=-0.059 Sum_probs=56.0
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---h-----------HHHHhc-
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---S-----------AVAYTM- 281 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---s-----------av~~~m- 281 (396)
.+++|.|.+..+..++....+.|. +|+| + .|.+.+...+.. ..|.++..++. . .+...+
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 588898888876666654433343 4444 4 377777665433 46777766531 1 122222
Q ss_pred ---ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 ---DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ---~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.++..+++-- -=-+.|.++..-==..++-+|+++++.+++
T Consensus 171 ~~~~~~~~i~~~~-P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVNF-PHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEeC-CCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 2344444421 013345566555556788889999988775
No 401
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=33.48 E-value=4.9e+02 Score=28.40 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHH----CC-CeeEEEEe-CCCC-------------------Cchh
Q 016064 201 ARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQ----NK-KLFRVLCT-EGRP-------------------DRSG 255 (396)
Q Consensus 201 a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~----~g-k~f~ViV~-EsrP-------------------~~eG 255 (396)
..+.+...-...|++||+|..=|+-.-.-.+|.++.. ++ +.++++.. -++| ..++
T Consensus 26 ~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~ 105 (543)
T TIGR01110 26 PTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQS 105 (543)
T ss_pred eHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcch
Confidence 3455666667799999999999887766666665332 22 45776654 3444 2345
Q ss_pred HHHHHHHHhCCCCEEEEc--c--hHHHHhc--ccCCEEEEcceeEeecCCeeccccH-----HHHHHHhhhCCCcEEEec
Q 016064 256 LRLANELAKLDVPVKLLI--D--SAVAYTM--DEVDMVFVGADGVVESGGIINMMGT-----YQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~--D--sav~~~m--~~vd~VlvGAd~V~~NG~v~nkiGT-----~~lAl~Ak~~~vPvyV~a 324 (396)
.++++.. +.| .+.+++ - +.++.++ -+.|.+++=+...-.+|.+. .|+ ..++.+|+..+--|+|-+
T Consensus 106 ~R~~~av-~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s--lG~s~~~~~aaaeAAk~~agiVIVEV 181 (543)
T TIGR01110 106 LRIAQLL-EDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY--TGPNTEDTPAIVEATAFRDGIVIAQV 181 (543)
T ss_pred HHHHHHH-HcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE--ecCcccchHHHHHhhhhcCCEEEEEE
Confidence 5665544 445 344444 3 3344433 46899999988888999884 455 456666675555566644
Q ss_pred c
Q 016064 325 E 325 (396)
Q Consensus 325 e 325 (396)
+
T Consensus 182 N 182 (543)
T TIGR01110 182 N 182 (543)
T ss_pred C
Confidence 3
No 402
>PRK07682 hypothetical protein; Validated
Probab=33.44 E-value=4.9e+02 Score=25.85 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=47.8
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-ccC
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM-DEV 284 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m-~~v 284 (396)
+++++|.|.+..+..++....+.|. +|++. .|.+.+... .+...|..+..++. .++-..+ +++
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 155 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPGD--EVLIV--EPSFVSYAP--LVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKT 155 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEeecCCccCCCCCHHHHHhhcCccc
Confidence 3688888777766655544433343 45543 355544333 23334665554431 1222222 234
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..|++- .---.-|.++++---..++-+|+++++.+++
T Consensus 156 ~~v~~~-~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 192 (378)
T PRK07682 156 KAILLC-SPNNPTGAVLNKSELEEIAVIVEKHDLIVLS 192 (378)
T ss_pred EEEEEE-CCCCCcCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 344331 1111223333333233566778888876654
No 403
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=33.43 E-value=5.8e+02 Score=26.62 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=64.6
Q ss_pred CceEEeecC-hHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhcc---c
Q 016064 216 GCTILVHGF-SRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTMD---E 283 (396)
Q Consensus 216 g~~ILT~~~-S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m~---~ 283 (396)
+++++..|. +..++..+....+.| -+|+|+... .-|.+++.-+...|.+|..+.- ..+...+. .
T Consensus 56 ~~~~ll~gsGt~amEAav~sl~~pg--dkVLv~~nG--~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~ 131 (383)
T COG0075 56 GDVVLLSGSGTLAMEAAVASLVEPG--DKVLVVVNG--KFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD 131 (383)
T ss_pred CcEEEEcCCcHHHHHHHHHhccCCC--CeEEEEeCC--hHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC
Confidence 355554443 445777777776544 467766654 4488999999999999888753 35555554 3
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++.|.+ .++=.+ -|++|.+.. +|-+||.|+.=++|
T Consensus 132 ~~~V~~-vH~ETS-TGvlnpl~~--I~~~~k~~g~l~iV 166 (383)
T COG0075 132 IKAVAV-VHNETS-TGVLNPLKE--IAKAAKEHGALLIV 166 (383)
T ss_pred ccEEEE-EeccCc-ccccCcHHH--HHHHHHHcCCEEEE
Confidence 444433 333334 468887654 88899999888887
No 404
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=33.37 E-value=2.2e+02 Score=29.67 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=40.8
Q ss_pred CchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 252 DRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 252 ~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
.+||.++.+.|... ++.-+|++|--+=++ |++++..+.+.++|++-+..
T Consensus 65 tceg~~~l~~l~~~----------------~~~gcv~lGP~CtYa---------t~~~~~~~~~~~~P~ISaGs 113 (380)
T cd06369 65 TCEGVELLKKLSVT----------------GRLGCVLLGPSCTYA---------TFQMVDDEFNLSLPIISAGS 113 (380)
T ss_pred cchHHHHHHHHHhc----------------CccCcEEEcCcccee---------hhhhhhhhhcCCCceEeccc
Confidence 47899999999753 477889999888776 78999999999999998654
No 405
>PRK07049 methionine gamma-lyase; Validated
Probab=33.34 E-value=5.7e+02 Score=26.58 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=34.1
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH--HHHHHhCCCCEEEEcc
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL--ANELAKLDVPVKLLID 274 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l--a~~L~~~GI~vtlI~D 274 (396)
.+.|+|-|.+..+..++....+.|. +|++. .|.+.|... ...|...|+++..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 4678887777776666655555564 45543 366666544 3446778998555543
No 406
>PRK07671 cystathionine beta-lyase; Provisional
Probab=33.28 E-value=5.3e+02 Score=26.20 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH-HH-HHHHHhCCCCEEEEcc---hHHHHhc-ccCCEEEEcc
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL-RL-ANELAKLDVPVKLLID---SAVAYTM-DEVDMVFVGA 291 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~-~l-a~~L~~~GI~vtlI~D---sav~~~m-~~vd~VlvGA 291 (396)
.+++-+.+..+..+ ..+.+.|. +|++.. |.+.|. .+ ++.+...|++++.+.. ..+...+ ++..+|++-
T Consensus 68 ~~~~~sG~aai~~~-~~~l~~Gd--~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le- 141 (377)
T PRK07671 68 GFAFGSGMAAITAV-MMLFSSGD--HVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE- 141 (377)
T ss_pred eEEeCCHHHHHHHH-HHHhCCCC--EEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE-
Confidence 34443334433333 34444454 566544 555432 33 5556778999888763 2333334 344455541
Q ss_pred eeEeecCCeecccc----HHHHHHHhhhCCCcEEE
Q 016064 292 DGVVESGGIINMMG----TYQIALVAHSMNKPVYV 322 (396)
Q Consensus 292 d~V~~NG~v~nkiG----T~~lAl~Ak~~~vPvyV 322 (396)
..-|..| -..++-+|++++++++|
T Consensus 142 -------~P~NPtg~~~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 142 -------TPTNPLLKITDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred -------CCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 1123333 33577788999988776
No 407
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=33.28 E-value=92 Score=30.35 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=28.2
Q ss_pred chhHHHHHHHHhCCCCEEEEcchH-HHH---hcccCCEEEEcceeEe
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSA-VAY---TMDEVDMVFVGADGVV 295 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsa-v~~---~m~~vd~VlvGAd~V~ 295 (396)
..|+.+++.|.+.|+++.++.... ... -+.+.|.|+.-++..+
T Consensus 19 ~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 19 RSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 457777888888888877775322 111 1356899998887664
No 408
>PRK00884 Maf-like protein; Reviewed
Probab=33.20 E-value=2.3e+02 Score=26.51 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=52.3
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCCch-hHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe-ec
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPDRS-GLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV-ES 297 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~~e-G~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~-~N 297 (396)
|.|..=..+|..+ |-.|.|+ +.|+.+..+ -..++..|+..+-. ++.. ..-+.+++|||.|. -|
T Consensus 8 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~--~~~~~~VI~aDTvV~~~ 75 (194)
T PRK00884 8 STSPYRRALLEKL---QLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQ-------SLAS--RYPDHLIIGSDQVCVLD 75 (194)
T ss_pred CCCHHHHHHHHHC---CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHh--hCCCCEEEEeCeEEEEC
Confidence 3343333445443 8889988 345433322 35667777654311 1111 12367999999976 59
Q ss_pred CCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 298 GGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 298 G~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
|.++.|-.+..=| ++-+-.|....|
T Consensus 76 g~ilgKP~~~eeA~~~L~~lsG~~h~V 102 (194)
T PRK00884 76 GEITGKPLTEENARAQLRKASGNIVTF 102 (194)
T ss_pred CEEecCCCCHHHHHHHHHHHCCCceEE
Confidence 9999999998766 444555655444
No 409
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=33.19 E-value=4.9e+02 Score=25.73 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=49.1
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhcc---
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTMD--- 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m~--- 282 (396)
..+++|.|.+..+..++....+.|. +|++. +|..-+.. ..+...|+++..++.. .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~gd--~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKGD--WVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 3566776666555555544433333 45553 23322222 3356678888776421 2222232
Q ss_pred -----cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 -----EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 -----~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..|++.. .=...|. +.. -..++-+|++++++++|
T Consensus 134 ~~~~~~~~lv~l~~-p~n~tG~-~~~--~~~i~~~~~~~~~~viv 174 (361)
T cd06452 134 DEFGKPPALALLTH-VDGNYGN-LHD--AKKIAKVCHEYGVPLLL 174 (361)
T ss_pred hccCCCceEEEEEC-CCCCCee-ecc--HHHHHHHHHHcCCeEEE
Confidence 456666631 1111222 222 23567778999998876
No 410
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=33.10 E-value=2.6e+02 Score=28.96 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=54.0
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc---------c-hHHHHhc-
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI---------D-SAVAYTM- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~---------D-sav~~~m- 281 (396)
+...++++|.|.+..+..++....+.|. +|++. +|.+.+...+.. ..|+.+..+. | ..+...+
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAV--FSGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHH--HcCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 3456788888888877666655443343 55554 466655444333 3466665543 1 2333333
Q ss_pred ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++..++++--= =-..|.++.+-=-..++-+|+++++++++
T Consensus 189 ~~~~~i~i~~P-~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAMVIINP-NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEEEEeCC-CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333333211 12234444433334566778999988765
No 411
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.95 E-value=1.9e+02 Score=29.17 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=48.6
Q ss_pred CceEEeecChH---HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchH-HHHhcccCCEEEEcc
Q 016064 216 GCTILVHGFSR---VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSA-VAYTMDEVDMVFVGA 291 (396)
Q Consensus 216 g~~ILT~~~S~---~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsa-v~~~m~~vd~VlvGA 291 (396)
.++.+|.|.|. ...+++..+.+....++|++--+.|...-. +...+..=+..++-|+. ++-+|+++|+.|..|
T Consensus 159 r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l---~k~~~~~~~i~~~~~~~dma~LMke~d~aI~Aa 235 (318)
T COG3980 159 RDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNL---RKRAEKYPNINLYIDTNDMAELMKEADLAISAA 235 (318)
T ss_pred heEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHH---HHHHhhCCCeeeEecchhHHHHHHhcchheecc
Confidence 46888899876 466777777665668888888777765322 12222233445555544 899999999988765
No 412
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=32.85 E-value=3.5e+02 Score=25.30 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=56.6
Q ss_pred cCceEEeecChH------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCC--EEE---EcchHHHHhccc
Q 016064 215 DGCTILVHGFSR------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVP--VKL---LIDSAVAYTMDE 283 (396)
Q Consensus 215 dg~~ILT~~~S~------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~--vtl---I~Dsav~~~m~~ 283 (396)
+..+|+..|+-. .+..++....+++..++++++-..+......+.....+.|++ |.+ +++..+..++..
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 281 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALAD 281 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhh
Confidence 345777777532 244445454444567787777654443333333222555553 333 344567788899
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+|.+++.... ++ .| ...+=|-.+|+|+++
T Consensus 282 adv~v~ps~~--e~------~~--~~~~Eama~G~PvI~ 310 (375)
T cd03821 282 ADLFVLPSHS--EN------FG--IVVAEALACGTPVVT 310 (375)
T ss_pred CCEEEecccc--CC------CC--cHHHHHHhcCCCEEE
Confidence 9998876543 21 12 234557789999987
No 413
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.84 E-value=5.8e+02 Score=26.45 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=52.7
Q ss_pred cCceEEeecChHHHHHHHHHHHHCC-CeeEEEEeC-CCCCchhHHHHHHHHhCCCCE--E---EEcch----HHHHhcc-
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNK-KLFRVLCTE-GRPDRSGLRLANELAKLDVPV--K---LLIDS----AVAYTMD- 282 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~g-k~f~ViV~E-srP~~eG~~la~~L~~~GI~v--t---lI~Ds----av~~~m~- 282 (396)
.|..++.++....+..++..+.+.| -..-+..+. ..|..++....+++.+.|++. . ++.|. .+..+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 5788888887777666666666667 544433332 334444444445666767632 2 44454 3444453
Q ss_pred -cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 283 -EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 283 -~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
+.|.+|.+.- .... ..|++.|+|++-+
T Consensus 372 ~~pDl~i~~~~-------------~~~~-~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRHG-------------GLFP-DATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcCC-------------CccH-HHHHhcCCCEEec
Confidence 4566554321 1111 2347799999765
No 414
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=32.79 E-value=3.1e+02 Score=27.85 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=60.6
Q ss_pred cCceEEeecChH----HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhcc--cCC
Q 016064 215 DGCTILVHGFSR----VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMD--EVD 285 (396)
Q Consensus 215 dg~~ILT~~~S~----~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~--~vd 285 (396)
.|..|-.|+-|- .+..+++...+++...+|+|+=+. ..|.++++++...++.+.+.+- ..+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 467899999884 355566666666677788766543 3467887766666788888773 24444554 457
Q ss_pred EEEEc-ceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 286 MVFVG-ADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 286 ~VlvG-Ad~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.|++. .| +.. .+...|+..++|++++.
T Consensus 127 ~v~~~~~~-~~~-----------~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETE-LWP-----------NLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecc-hhH-----------HHHHHHHHCCCCEEEEe
Confidence 66542 11 111 23345788999998864
No 415
>PRK06091 membrane protein FdrA; Validated
Probab=32.74 E-value=3.3e+02 Score=29.84 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCC
Q 016064 181 NSARSRLIERAEKFGEISYKA-RK-------IIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPD 252 (396)
Q Consensus 181 ~~~k~~Lie~i~~f~e~~~~a-~~-------~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~ 252 (396)
+++-+.+++.+++|....... .. +-...+.+.+.+.|..+..-....|...+.+|.+.|+. -+++.++-|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~-viI~S~gfg~ 153 (555)
T PRK06091 75 AGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTL 153 (555)
T ss_pred hHHHHHHHHHHHHHhhccccccCCcCCCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCe-EEEEcCCCCH
Confidence 456667777777776432210 01 11223444555668888888888899999999998854 3445554432
Q ss_pred chhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecC--CeeccccHHHHHHH--hhhCCCcE
Q 016064 253 RSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESG--GIINMMGTYQIALV--AHSMNKPV 320 (396)
Q Consensus 253 ~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG--~v~nkiGT~~lAl~--Ak~~~vPv 320 (396)
..=.+|.+..++.|+.+ +-|++..+. ..++..-+. .++.-| ++++..||...+++ +++.++-|
T Consensus 154 ~~E~~L~e~Ar~~Glrv-mGPNCG~~~-i~gl~lsF~---~~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~ 220 (555)
T PRK06091 154 EDEIRLKTRAREKGLLV-MGPDCGTAM-IAGTPLAFA---NVMPEGNIGVIGASGTGIQELCSQIALAGEGI 220 (555)
T ss_pred HHHHHHHHHHHHcCCEE-ECCCChhhh-hcCCccccc---CCCCCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 22234444445666532 455553233 344443332 123456 47999998877765 56677766
No 416
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.66 E-value=1.2e+02 Score=25.28 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 266 DVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 266 GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
|+++....|......+.+-|.+|+ +...|. ..-+..++-.||+.++|+++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~dl~I~----iS~SG~---t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 26 KIPVYVVKDYTLPAFVDRKTLVIA----VSYSGN---TEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCEEEecCccCcCCCCCCCEEEE----EECCCC---CHHHHHHHHHHHHCCCEEEEEeC
Confidence 677777666443333455566654 233342 22355667788999999999885
No 417
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=32.66 E-value=1.2e+02 Score=31.92 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=42.9
Q ss_pred eEEeecChHHHHHHHHHH-HHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHh--cccCCEEEEccee
Q 016064 218 TILVHGFSRVVMEVLKMA-AQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYT--MDEVDMVFVGADG 293 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A-~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~--m~~vd~VlvGAd~ 293 (396)
.||.+|+.+- +..|..+ .+++....|+|.-..|+ ......|. ++++. +| ..+-.+ -.++|+|++|-+.
T Consensus 2 kVLviGsGgR-EHAiA~~la~s~~v~~~~~apgN~G---~a~~~~~~--~~~~~--~~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 2 KVLVIGSGGR-EHALAWKLAQSPLVLYVYVAPGNPG---TALEAYLV--NIEID--TDHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred eEEEEcCCch-HHHHHHHHhcCCceeEEEEeCCCCc---cchhhhhc--cCccc--cCHHHHHHHHHHcCCCEEEECCcH
Confidence 5778877653 2333333 33567788888755554 44323333 33332 23 222222 2679999999999
Q ss_pred EeecC
Q 016064 294 VVESG 298 (396)
Q Consensus 294 V~~NG 298 (396)
-+..|
T Consensus 74 pL~~G 78 (428)
T COG0151 74 PLVAG 78 (428)
T ss_pred HHhhh
Confidence 99987
No 418
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=32.64 E-value=97 Score=34.39 Aligned_cols=51 Identities=22% Similarity=0.150 Sum_probs=33.3
Q ss_pred cChHHHHHHHHHHHHCCCeeEEEEeCCCCCch--hHHHHHHHHhCCCCEEEEc
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRS--GLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~e--G~~la~~L~~~GI~vtlI~ 273 (396)
|.-|-+.+.|.+|+++||...|.|==-.-.-| -...|+.|.++|+.|.|-.
T Consensus 381 ~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 381 SKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 44344555666777889998887532222222 2456999999999988743
No 419
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=32.64 E-value=2.3e+02 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=17.3
Q ss_pred CCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 298 GGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 298 G~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
||.+..++-+..++. ..++|++.+--|
T Consensus 97 GG~v~D~ak~~A~~~--~rg~p~i~VPTT 123 (354)
T cd08199 97 GGVLTDVAGLAASLY--RRGTPYVRIPTT 123 (354)
T ss_pred CcHHHHHHHHHHHHh--cCCCCEEEEcCc
Confidence 667777766655443 238998876654
No 420
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=32.63 E-value=2.4e+02 Score=26.15 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCeeEEEEeCCCCC--chhHHHHHHHHhCCCCEEEEcc-hHHHHhc
Q 016064 227 VVMEVLKMAAQNKKLFRVLCTEGRPD--RSGLRLANELAKLDVPVKLLID-SAVAYTM 281 (396)
Q Consensus 227 ~V~~~L~~A~~~gk~f~ViV~EsrP~--~eG~~la~~L~~~GI~vtlI~D-sav~~~m 281 (396)
-+.+.+.++.++|++. |++.-+-|. .-|..+.+.+.+.|+++++||= |++.+++
T Consensus 59 ~~~~~i~~~~~~g~~V-~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~ 115 (229)
T TIGR01465 59 EIVDIMSDAHREGKLV-VRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAA 115 (229)
T ss_pred HHHHHHHHHHHCCCeE-EEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHH
Confidence 3455555555557643 445578885 4467778899999999999995 4444444
No 421
>PRK05865 hypothetical protein; Provisional
Probab=32.63 E-value=1.2e+02 Score=34.95 Aligned_cols=98 Identities=21% Similarity=0.110 Sum_probs=54.8
Q ss_pred eEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE--Ecc-hHHHHhcccCCEEEEccee
Q 016064 218 TILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL--LID-SAVAYTMDEVDMVFVGADG 293 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl--I~D-sav~~~m~~vd~VlvGAd~ 293 (396)
+||..|.++.+-.-|.+ +.++| .+|+++..++.. . + ..++.... +.| ..+..++.++|.||--|-
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G--~~Vv~l~R~~~~---~----~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa- 70 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG--HEVVGIARHRPD---S----W-PSSADFIAADIRDATAVESAMTGADVVAHCAW- 70 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCchh---h----c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC-
Confidence 57778887766554443 33445 466655433211 0 1 12332221 122 355566788888887662
Q ss_pred EeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 294 VVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 294 V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
......-+|-.||..+.-+|+..+++-+|...+
T Consensus 71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 222223457789999999999888765554433
No 422
>PLN00416 carbonate dehydratase
Probab=32.63 E-value=2.7e+02 Score=27.30 Aligned_cols=20 Identities=0% Similarity=-0.037 Sum_probs=13.3
Q ss_pred HHHHHhhhCCCcEEEecccc
Q 016064 308 QIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 308 ~lAl~Ak~~~vPvyV~aes~ 327 (396)
.+-.+..+.++|.+|+|..+
T Consensus 129 sLEyAv~~L~V~~IVV~GHs 148 (258)
T PLN00416 129 AVEYAVVHLKVENILVIGHS 148 (258)
T ss_pred HHHHHHHHhCCCEEEEecCC
Confidence 34555667788888777554
No 423
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=32.63 E-value=2.4e+02 Score=25.64 Aligned_cols=74 Identities=12% Similarity=0.233 Sum_probs=42.9
Q ss_pred EEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHH-HHhcccCCEEEE-cceeEeecCCeeccccHHHHHHHhh-hCCCc
Q 016064 243 RVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV-AYTMDEVDMVFV-GADGVVESGGIINMMGTYQIALVAH-SMNKP 319 (396)
Q Consensus 243 ~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav-~~~m~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~Ak-~~~vP 319 (396)
+|++++..+-+ +..+++.|.+.|+++.++..... ..-+...|.+|+ |--.. -...+-. ..++.+ ..++|
T Consensus 3 ~iliid~~dsf-~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~------~~~~~~~-~~~i~~~~~~~P 74 (190)
T PRK06895 3 KLLIINNHDSF-TFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDV------PRAYPQL-FAMLERYHQHKS 74 (190)
T ss_pred EEEEEeCCCch-HHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCC------hHHhhHH-HHHHHHhcCCCC
Confidence 67778776654 55589999999999988872111 123456777774 32211 0112221 233322 34899
Q ss_pred EEEec
Q 016064 320 VYVAA 324 (396)
Q Consensus 320 vyV~a 324 (396)
++-+|
T Consensus 75 iLGIC 79 (190)
T PRK06895 75 ILGVC 79 (190)
T ss_pred EEEEc
Confidence 99776
No 424
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=32.59 E-value=56 Score=32.04 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=42.6
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS 275 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds 275 (396)
+..|++|.+.|.+..-..+=..|+.-|-+..|++.++.|.. ....++..|-+|+++...
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPGA 112 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECCC
Confidence 45667888877777666655566667888999999887632 256678889888887653
No 425
>PRK07283 hypothetical protein; Provisional
Probab=32.59 E-value=2.5e+02 Score=23.12 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=39.5
Q ss_pred HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-chHHHHhcccCCEEEEc
Q 016064 234 MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-DSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 234 ~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-Dsav~~~m~~vd~VlvG 290 (396)
+|.++|+-.-|++.+..+...-..+.......+||+.... -..++.++++ +.+++|
T Consensus 28 ~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk-~~~vva 84 (98)
T PRK07283 28 KAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGK-PRKVLA 84 (98)
T ss_pred HHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC-CceEEE
Confidence 3445577777888888777766777777778899986544 3568888888 455554
No 426
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=32.55 E-value=62 Score=34.57 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHHHhCCCCEEEEcchHHHHhc--ccCCEEEEcceeE
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTM--DEVDMVFVGADGV 294 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~GI~vtlI~Dsav~~~m--~~vd~VlvGAd~V 294 (396)
.||..|.++-.-.+...+++..+..+||++.+.+ +-|... +......-+.+.......+..+. .++|.|++|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6888898886665665665554567999886633 334322 22211110111111112333333 4689999998754
Q ss_pred e
Q 016064 295 V 295 (396)
Q Consensus 295 ~ 295 (396)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 3
No 427
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.55 E-value=72 Score=29.50 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEE-cceeEeecCCeeccccHHHHHHHh--hhCCCcEEEecccc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFV-GADGVVESGGIINMMGTYQIALVA--HSMNKPVYVAAESY 327 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~A--k~~~vPvyV~aes~ 327 (396)
+.+.+.|.+.|.++.++.+.. -+.++|.+|+ |-.+....+..+...|- ..++.- ...++|++-+|--+
T Consensus 13 ~~v~~~l~~~g~~~~~~~~~~---~l~~~d~lilPG~g~~~~~~~~l~~~~~-~~~l~~~~~~~~~pvlGiC~G~ 83 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKNPK---DLQKADKLLLPGVGSFKEAMKNLKELGF-IEALKEQVLVQKKPILGICLGM 83 (201)
T ss_pred HHHHHHHHHCCCeEEEECCHH---HHcCCCEEEECCCCchHHHHHHHHHcCc-HHHHHHHHHhCCCcEEEECHhH
Confidence 566788888898888887754 2467888777 43333222223333342 233322 35689999777443
No 428
>PRK06756 flavodoxin; Provisional
Probab=32.39 E-value=99 Score=26.78 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCEEEEcchH--HHHhcccCCEEEEcceeEeecCCeeccccHHHHHHH-hhhCCCcEEEec
Q 016064 258 LANELAKLDVPVKLLIDSA--VAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALV-AHSMNKPVYVAA 324 (396)
Q Consensus 258 la~~L~~~GI~vtlI~Dsa--v~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~-Ak~~~vPvyV~a 324 (396)
+++.|.+.|++|.++.... ...-+.+.|.|++|+ ....+|.+-..+-.+.-.+. .+-.++|+.+.+
T Consensus 22 ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gs-pt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fg 90 (148)
T PRK06756 22 IAGVIRETENEIEVIDIMDSPEASILEQYDGIILGA-YTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFG 90 (148)
T ss_pred HHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEe-CCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 3455666677776553221 124567899999998 44444544322322211111 123578888764
No 429
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.29 E-value=3.8e+02 Score=25.67 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=56.7
Q ss_pred CceEEeecChHHHHHHH-HHHHHCCCeeEEEEeCCCCCchhHHHHHHHHh-CC--CCEEEE----c-chHHHHhcccCCE
Q 016064 216 GCTILVHGFSRVVMEVL-KMAAQNKKLFRVLCTEGRPDRSGLRLANELAK-LD--VPVKLL----I-DSAVAYTMDEVDM 286 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L-~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~-~G--I~vtlI----~-Dsav~~~m~~vd~ 286 (396)
|.+||..|.++-+-..| +++.++|- +|+++.-++...+ .+ ..+.. .+ -.++++ . ...+..+++++|.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 79 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPK-KT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEG 79 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchh-hH-HHHHhccCCCCceEEEeccccCcchHHHHHcCCCE
Confidence 56899999888775544 34445565 4544332222211 11 11211 11 123333 2 2456677888999
Q ss_pred EEEcceeEee---cC--C--eeccccHHHHHHHhhhC-CCcEEEec
Q 016064 287 VFVGADGVVE---SG--G--IINMMGTYQIALVAHSM-NKPVYVAA 324 (396)
Q Consensus 287 VlvGAd~V~~---NG--~--v~nkiGT~~lAl~Ak~~-~vPvyV~a 324 (396)
||--|-.+.. +. . -.|-.||..+.-+|+.. ++.=+|.+
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 80 VFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred EEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 8887644322 11 1 12678999998888776 76544443
No 430
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=32.28 E-value=1.1e+02 Score=27.61 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCEEEEcchHHHHh---cccCCEEEE-cceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 257 RLANELAKLDVPVKLLIDSAVAYT---MDEVDMVFV-GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~Dsav~~~---m~~vd~Vlv-GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
.+++.|.+.|+++.+++...-... ..++|.||+ |...-. .+.+.+...+-+-..++|++-+|=-+
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~------~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHP------EDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCc------ccchhHHHHHHHHhcCCCEEEECHhH
Confidence 467888888999888887544322 367888777 332111 11122222222224579999877443
No 431
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=32.11 E-value=70 Score=31.27 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=29.6
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHH
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLA 259 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la 259 (396)
+||..|.+.-. .+++.+++.|..++|++++..|...|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 56666666554 667777766667999999998887776543
No 432
>PRK02141 Maf-like protein; Reviewed
Probab=32.11 E-value=3.3e+02 Score=25.74 Aligned_cols=90 Identities=26% Similarity=0.183 Sum_probs=54.2
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCCch-hHHHHHHHHhCCCCEEEEcchHHHHhc-ccCCEEEEcceeEe-e
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPDRS-GLRLANELAKLDVPVKLLIDSAVAYTM-DEVDMVFVGADGVV-E 296 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~~e-G~~la~~L~~~GI~vtlI~Dsav~~~m-~~vd~VlvGAd~V~-~ 296 (396)
|.|..=.++|..+ |-.|+|+ +.|+....+ -..++.+|++.+- .+++.-+ ..-+.+++|||.|. -
T Consensus 15 S~SprR~elL~~~---G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA-------~~v~~~l~~~~~~iVI~aDTvV~~ 84 (207)
T PRK02141 15 SSSRYRRELLERL---RLPFDVVSPDIDETPLAGETPAATALRLAAAKA-------RAVAATIDAPPGALVIGSDQVATF 84 (207)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCeEEEE
Confidence 4444434455443 8889988 445433322 4566777776541 1122222 13478999999976 5
Q ss_pred cCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 297 SGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 297 NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
||.++.|-.+..=| ++-+-.|...-|
T Consensus 85 ~g~ilgKP~~~~eA~~mL~~lsG~~H~V 112 (207)
T PRK02141 85 DGLQIGKPGTHERALAQLQAMRGRTVEF 112 (207)
T ss_pred CCEEecCCCCHHHHHHHHHHhCCCceEE
Confidence 99999999998766 444445554433
No 433
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=31.94 E-value=3e+02 Score=27.59 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=62.2
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHH-HHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANE-LAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~-L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
|..+..-....|...|+++.++|-+.-|+++++-+.....++..+ .++.|+ .++=-++++.+-....++..-.....
T Consensus 71 DlAvI~vPa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gi--rviGPNc~Gii~~~~~~~~~~~~~~~ 148 (300)
T PLN00125 71 NASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKT--RLIGPNCPGIIKPGECKIGIMPGYIH 148 (300)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCC--EEECCCCceeecccccceeecCCCCC
Confidence 677777778889999999999888888888887776544444444 344554 44444445444332211111111223
Q ss_pred ecC--CeeccccHHHHHHH--hhhCCCcE
Q 016064 296 ESG--GIINMMGTYQIALV--AHSMNKPV 320 (396)
Q Consensus 296 ~NG--~v~nkiGT~~lAl~--Ak~~~vPv 320 (396)
.-| +++++.|+...+++ +.+.++-|
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~ 177 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQ 177 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCe
Confidence 345 47999998777765 55566665
No 434
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=31.81 E-value=3.1e+02 Score=26.31 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=68.8
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEE----EeCC--CCCc------hhHHHHHHHHhCCCCEEEEcc----------
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVL----CTEG--RPDR------SGLRLANELAKLDVPVKLLID---------- 274 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~Vi----V~Es--rP~~------eG~~la~~L~~~GI~vtlI~D---------- 274 (396)
..||+||.++.+...+++. |...+-. +++. -+.. --.++...|.++|++..-++-
T Consensus 30 ~~VlVHGgg~~i~~~~~~~---gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~~ 106 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAA---GVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLDK 106 (248)
T ss_pred cEEEEeCCCHHHHHHHHHc---CCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECcC
Confidence 5799999999888877654 3221111 1111 0111 123557778888887544432
Q ss_pred --------------hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCc-EEEecc
Q 016064 275 --------------SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKP-VYVAAE 325 (396)
Q Consensus 275 --------------sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vP-vyV~ae 325 (396)
..+-.++..-...++..+++..+|.++|--|-...+.+|+..+.. ++.+++
T Consensus 107 ~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 107 DKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred ccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 223334455566888889988999999999999999999998854 555554
No 435
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=31.62 E-value=4.1e+02 Score=26.47 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=53.1
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCe-----eEEEEeCCCCCchhHHH-HHHHHhC-----C-----CCEEEEc--c-hH
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKL-----FRVLCTEGRPDRSGLRL-ANELAKL-----D-----VPVKLLI--D-SA 276 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~-----f~ViV~EsrP~~eG~~l-a~~L~~~-----G-----I~vtlI~--D-sa 276 (396)
..+++|.|.+..++..++.|...+.+ -+|++.+. .+.|... +..+... + -.+..++ | .+
T Consensus 97 ~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (396)
T PRK02627 97 DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAEN--SFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEA 174 (396)
T ss_pred CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECC--CcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHH
Confidence 46788888888888888866543332 56666653 3445443 2222110 0 1122232 3 23
Q ss_pred HHHhc-ccCCEEEEcceeEeecCCe--eccccHHHHHHHhhhCCCcEEE
Q 016064 277 VAYTM-DEVDMVFVGADGVVESGGI--INMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 277 v~~~m-~~vd~VlvGAd~V~~NG~v--~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+...+ +++..|++-. +..+||+ .++-=-..+.-+|+++++.+++
T Consensus 175 l~~~i~~~~~~vii~p--~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 221 (396)
T PRK02627 175 LKAAITDKTAAVMLEP--IQGEGGVNPADKEYLQALRELCDENGILLIL 221 (396)
T ss_pred HHHhcCCCeEEEEEec--ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 44444 3455566532 3444442 2222234566678999987764
No 436
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.61 E-value=79 Score=29.18 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeec-CCeeccccHHHHHHHhhhCCCcEEEecccccc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVES-GGIINMMGTYQIALVAHSMNKPVYVAAESYKF 329 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~N-G~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf 329 (396)
..+++.|++.|+++.++.+. .-+.+.|.||++--....+ -......|....-.-+...++|++-+|--+-+
T Consensus 13 ~~i~~~l~~~G~~v~~~~~~---~~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Ql 84 (205)
T PRK13141 13 RSVEKALERLGAEAVITSDP---EEILAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQL 84 (205)
T ss_pred HHHHHHHHHCCCeEEEECCH---HHhccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHH
Confidence 67788999999999988654 2356788887753100000 00001123333333344588999988855443
No 437
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=31.59 E-value=2.4e+02 Score=24.07 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=40.1
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
++.+|+..|....-..+.+...+.| ..+|++.+..+. ....+++++...++.+... | ....++++|.|+...
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYL-D--LEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeec-c--hhhccccCCEEEeCc
Confidence 4567888888655444555544444 346777655433 3455566665443333332 2 122367888888754
No 438
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.50 E-value=3.4e+02 Score=31.88 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=62.7
Q ss_pred cCceEEeec--ChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch-----HHHHhc--ccCC
Q 016064 215 DGCTILVHG--FSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS-----AVAYTM--DEVD 285 (396)
Q Consensus 215 dg~~ILT~~--~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-----av~~~m--~~vd 285 (396)
.|.++++.+ .-.-+..+.+...+ ..|+++.+++ .++.|.+.||+|+.+..- .+--++ +++|
T Consensus 937 ~~~~lisv~~~dK~~l~~~a~~l~~--~G~~i~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id 1006 (1066)
T PRK05294 937 SGTVFLSVRDRDKEEVVELAKRLLE--LGFKILATSG--------TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEID 1006 (1066)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHH--cCCEEEEccH--------HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeE
Confidence 455677766 33344555555554 4588887764 578899999998887631 233333 6899
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+||--.. |. -.....|.+=-+|=.++||++--.++
T Consensus 1007 lvIn~~~-----~~-~~~~~g~~iRr~Av~~~ip~~T~~~~ 1041 (1066)
T PRK05294 1007 LVINTPT-----GR-QAIRDGFSIRRAALEYKVPYITTLAG 1041 (1066)
T ss_pred EEEECCC-----Cc-ccccccHHHHHHHHHcCCCEEecHHH
Confidence 9987543 21 12345688999999999999854444
No 439
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.38 E-value=53 Score=27.67 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=18.9
Q ss_pred ccccCceEEeecChHH---HHHHHHHHHHCC
Q 016064 212 FIFDGCTILVHGFSRV---VMEVLKMAAQNK 239 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~---V~~~L~~A~~~g 239 (396)
.+.++|.++.+|.|+. +...++.|+++|
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g 74 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKG 74 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcC
Confidence 5677888888887763 555666666544
No 440
>PRK07777 aminotransferase; Validated
Probab=31.37 E-value=5.4e+02 Score=25.69 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=49.4
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-----------hHHHHhc-ccC
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-----------SAVAYTM-DEV 284 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-----------sav~~~m-~~v 284 (396)
.+++|.|.+..+..++......| -+|++. .|.+.+... .+...|..+..++. ..+-..+ +++
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAA--VIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT 160 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHH--HHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc
Confidence 58888888887766665433323 355553 366655443 33344655444321 1222222 234
Q ss_pred CEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 285 DMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 285 d~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
..|++- .---.-|.++.+---..++-+|+++++.+++
T Consensus 161 ~~v~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 161 RALIVN-SPHNPTGTVLTAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred EEEEEc-CCCCCCCccCCHHHHHHHHHHHHhcCcEEEE
Confidence 344332 1111224444333344567778888887765
No 441
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=31.33 E-value=5.2e+02 Score=25.42 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=48.7
Q ss_pred cCceEEeecChHHHHHHHHHHHH---C-CCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQ---N-KKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID--------SAVAYTMD 282 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~---~-gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m~ 282 (396)
+...++|.|.+......+..+.. . ++.-+|++.+. ..-+ +.+.....|+++..++. ..+...+.
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~--~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPES--AHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCc--chHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 34567777755544443332221 1 22246776653 2222 33445567988877752 12222332
Q ss_pred cCC--EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 283 EVD--MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 283 ~vd--~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
+-+ .|++. .-...|.+ .. --.++-+||+++++++|
T Consensus 152 ~~~~~vv~~~--~~~~tG~~-~~--~~~i~~l~~~~~~~liv 188 (373)
T TIGR03812 152 DNTIGIVGIA--GTTELGQI-DD--IEELSKIALENGIYLHV 188 (373)
T ss_pred hCcEEEEEEC--CCCCCCcc-CC--HHHHHHHHHHcCCeEEE
Confidence 222 22222 12334433 22 24677889999998887
No 442
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=31.11 E-value=88 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=20.7
Q ss_pred eEEeecChHHH---HHHHHHHHHCCCeeEEEEeCCC
Q 016064 218 TILVHGFSRVV---MEVLKMAAQNKKLFRVLCTEGR 250 (396)
Q Consensus 218 ~ILT~~~S~~V---~~~L~~A~~~gk~f~ViV~Esr 250 (396)
.++-.|.|..+ ..+++.+.+.|-..+|+++++.
T Consensus 3 I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 3 ILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 45556666654 3455666666777788887764
No 443
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=31.09 E-value=3.7e+02 Score=28.89 Aligned_cols=77 Identities=23% Similarity=0.176 Sum_probs=46.3
Q ss_pred cccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchh-------------HHH---HHHHHhCCCCEEEE----
Q 016064 213 IFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSG-------------LRL---ANELAKLDVPVKLL---- 272 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG-------------~~l---a~~L~~~GI~vtlI---- 272 (396)
...|+.|+.+|-...=+.+...+.+.|. +|+|.|..|...| ..+ ...+.+.|+++.+-
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4578999999988765555555665564 6888887664432 111 23456778765542
Q ss_pred cchHHHHhcccCCEEEEcc
Q 016064 273 IDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 273 ~Dsav~~~m~~vd~VlvGA 291 (396)
.|-.........|.||+++
T Consensus 212 ~~~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAI 230 (564)
T ss_pred CcCCHHHHHhhCCEEEEee
Confidence 1212233345678888743
No 444
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=31.06 E-value=2.5e+02 Score=27.68 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=57.0
Q ss_pred eEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc---c-hHHHHhcccCCEEEEcce-
Q 016064 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI---D-SAVAYTMDEVDMVFVGAD- 292 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~---D-sav~~~m~~vd~VlvGAd- 292 (396)
+||..|.++-+-..|..+..+...++|+.+.-++. .....+...+++..... | ..+..+++++|.||=-|-
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD----RLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAI 78 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH----HHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECccc
Confidence 68888888877666655443222367887653221 12122222344433211 2 234456678887773221
Q ss_pred eEe----ecCC---eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 293 GVV----ESGG---IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 293 ~V~----~NG~---v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
..- .+-. -.|-.||..+.-+|+..+++|+.+...
T Consensus 79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 111 1111 125679999999999988887766544
No 445
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=30.95 E-value=74 Score=32.15 Aligned_cols=73 Identities=12% Similarity=0.235 Sum_probs=46.9
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc-hHHHHhcc--cCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID-SAVAYTMD--EVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D-sav~~~m~--~vd~VlvGA 291 (396)
...+||..|.+..-..+++.|.+. .++|++++..|..-|..++..... ++ +.| .++..+.+ ++|.|+.+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~~~--~~---~~d~~~l~~~~~~~~id~vi~~~ 83 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRSHV--ID---MLDGDALRAVIEREKPDYIVPEI 83 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhheEE--CC---CCCHHHHHHHHHHhCCCEEEEee
Confidence 345899999887766677776654 468888888888777665432110 11 123 34444554 789888887
Q ss_pred eeE
Q 016064 292 DGV 294 (396)
Q Consensus 292 d~V 294 (396)
+.+
T Consensus 84 e~~ 86 (395)
T PRK09288 84 EAI 86 (395)
T ss_pred CcC
Confidence 654
No 446
>PRK14365 Maf-like protein; Provisional
Probab=30.88 E-value=2.5e+02 Score=26.34 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=51.0
Q ss_pred ecChHHHHHHHHHHHHCCCeeEEE---EeCCCCCc-hhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEe-
Q 016064 222 HGFSRVVMEVLKMAAQNKKLFRVL---CTEGRPDR-SGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVV- 295 (396)
Q Consensus 222 ~~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~~-eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~- 295 (396)
.+.||--++-|.... .|-.|+|+ +.|+.... .-..++.+|+..+- -.+.+ .-+.+++|||.|.
T Consensus 6 LaSsSprR~elL~~~-~g~~f~vi~~~idE~~~~~~~p~~~v~~lA~~KA----------~~v~~~~~~~~vI~aDTvV~ 74 (197)
T PRK14365 6 LASASPRRKELLKQL-IGDNFLVYPSSYEEPPQPGLDPEELLLKHSLEKA----------RDVAKHFDSGIIISADTSVF 74 (197)
T ss_pred EeCCCHHHHHHHhcC-cCcCeEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEE
Confidence 344444444343221 17789888 33433222 23455666654431 11111 1367999999966
Q ss_pred ecCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 296 ESGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 296 ~NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
-||.++.|-.+..=| ++-.-.|.+.-|
T Consensus 75 ~~g~Il~KP~~~~eA~~~L~~lsg~~h~v 103 (197)
T PRK14365 75 CNGEVLGKPASPENAEEMLEKLSGRKFLV 103 (197)
T ss_pred ECCEEecCCCCHHHHHHHHHHHCCCceEE
Confidence 599999999998766 344445555444
No 447
>PRK12414 putative aminotransferase; Provisional
Probab=30.54 E-value=5.6e+02 Score=25.68 Aligned_cols=100 Identities=10% Similarity=0.075 Sum_probs=48.0
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch---------HHHHhc-ccCC
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS---------AVAYTM-DEVD 285 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds---------av~~~m-~~vd 285 (396)
..+++|.|.+..+..++......|. +|++. .|.+.+.... +...|..+..++.. .+-..+ ++..
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 164 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPGD--EVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTR 164 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCCC--EEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCcccE
Confidence 3588887766665555544433343 56653 3655443332 33357666555421 122222 2333
Q ss_pred EEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 286 ~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.|++- .---..|.++++.=-..++-+|+++++++++
T Consensus 165 ~v~i~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 165 MIIVN-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred EEEEc-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 33331 1111123333322234566678889987765
No 448
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=30.52 E-value=4.1e+02 Score=26.92 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=50.2
Q ss_pred ccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhc-c
Q 016064 214 FDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTM-D 282 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m-~ 282 (396)
...++++|-|.+..+..++......|. +|++. +|.+.+... .....|+++..++. ..+-..+ +
T Consensus 95 ~~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 168 (403)
T TIGR01265 95 TADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE 168 (403)
T ss_pred CHHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCc
Confidence 334577777666665555544433343 45544 365544333 33456777766531 1222222 3
Q ss_pred cCCEEEEcceeEeecCCeeccccHH-------HHHHHhhhCCCcEEE
Q 016064 283 EVDMVFVGADGVVESGGIINMMGTY-------QIALVAHSMNKPVYV 322 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v~nkiGT~-------~lAl~Ak~~~vPvyV 322 (396)
+..+|++- |- -|..|+. .++-+|+++++++++
T Consensus 169 ~~~~v~i~------~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 169 KTVAIVVI------NP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CccEEEEe------cC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44444442 21 2556654 466678899988876
No 449
>PLN02686 cinnamoyl-CoA reductase
Probab=30.51 E-value=2.7e+02 Score=28.07 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=61.2
Q ss_pred ccccCceEEeecChHHHHHHHHH-HHHCCCeeEEEEeCCCCCchhHHHHHHHHhC---C---CCEEEE----cc-hHHHH
Q 016064 212 FIFDGCTILVHGFSRVVMEVLKM-AAQNKKLFRVLCTEGRPDRSGLRLANELAKL---D---VPVKLL----ID-SAVAY 279 (396)
Q Consensus 212 ~I~dg~~ILT~~~S~~V~~~L~~-A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~---G---I~vtlI----~D-sav~~ 279 (396)
....+.+||..|.++-+-..|.+ +.++| .+|+++-..+ ..-..+ +.|... + -.+.++ .| ..+..
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G--~~V~~~~r~~-~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~ 124 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHG--YSVRIAVDTQ-EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHE 124 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHH
Confidence 34557899999998876655544 44445 4565432221 111122 233211 1 123332 33 34556
Q ss_pred hcccCCEEEEcceeEeecCC---------eeccccHHHHHHHhhhC-CCcEEEeccc
Q 016064 280 TMDEVDMVFVGADGVVESGG---------IINMMGTYQIALVAHSM-NKPVYVAAES 326 (396)
Q Consensus 280 ~m~~vd~VlvGAd~V~~NG~---------v~nkiGT~~lAl~Ak~~-~vPvyV~aes 326 (396)
++..+|.|+ ..+++..+++ -+|-.||..+.-+|++. +++=+|.+.+
T Consensus 125 ~i~~~d~V~-hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 125 AFDGCAGVF-HTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred HHHhccEEE-ecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 678899887 5666655443 14667899998888875 6775554444
No 450
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=30.48 E-value=1.5e+02 Score=27.25 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=48.5
Q ss_pred ceEEeecChH----HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc---hHHHHhcccC--CEE
Q 016064 217 CTILVHGFSR----VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID---SAVAYTMDEV--DMV 287 (396)
Q Consensus 217 ~~ILT~~~S~----~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D---sav~~~m~~v--d~V 287 (396)
..|-.|+-|- .+..++.+..++....+|+++=+.| .|.++++.+...++.+.|.|. .++..+++.. +.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 7999999884 3455555555555567888776543 478888777556888999874 3445566543 544
Q ss_pred E-EcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 288 F-VGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 288 l-vGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
| ++.| +-. ++-..|+..|+|++.+-.
T Consensus 100 i~~EtE-lWP-----------nll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 100 IWVETE-LWP-----------NLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEES-----H-----------HHHHH-----S-EEEEEE
T ss_pred EEEccc-cCH-----------HHHHHHhhcCCCEEEEee
Confidence 4 4444 334 367778999999998764
No 451
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=30.44 E-value=4.5e+02 Score=26.30 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=49.6
Q ss_pred HHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC--CCC-EEEE---cchHHHHhcccCCEEEEcceeEeecCCee
Q 016064 228 VMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL--DVP-VKLL---IDSAVAYTMDEVDMVFVGADGVVESGGII 301 (396)
Q Consensus 228 V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~--GI~-vtlI---~Dsav~~~m~~vd~VlvGAd~V~~NG~v~ 301 (396)
+...|....+.+. .+++|+-||= .+..+...|.+. +.+ +.+. .++=...+|..+|.|++-+|+|.
T Consensus 170 l~~~l~~~~~~~~-~~~~vttSRR--Tp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvS------ 240 (311)
T PF06258_consen 170 LLDQLAALAAAYG-GSLLVTTSRR--TPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVS------ 240 (311)
T ss_pred HHHHHHHHHHhCC-CeEEEEcCCC--CcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHH------
Confidence 3344444444333 7888888873 333443444332 122 2222 23446667899999999998852
Q ss_pred ccccHHHHHHHhhhCCCcEEEecccc
Q 016064 302 NMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 302 nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+..=|-..|+||||+.-..
T Consensus 241 -------MvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 241 -------MVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred -------HHHHHHHcCCCEEEecCCC
Confidence 3333556789999987554
No 452
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=30.43 E-value=4.1e+02 Score=24.70 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=52.7
Q ss_pred ceEEeecChH------HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCC--EEEEc-chHHHHhcccCCEE
Q 016064 217 CTILVHGFSR------VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVP--VKLLI-DSAVAYTMDEVDMV 287 (396)
Q Consensus 217 ~~ILT~~~S~------~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~--vtlI~-Dsav~~~m~~vd~V 287 (396)
.+|+..|+-. .+...+....+.+..++++++-..+..+-...... .+.|++ +.+.. ..-+..+|..+|.+
T Consensus 194 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~adi~ 272 (365)
T cd03807 194 FLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLAL-KELGLEDKVILLGERSDVPALLNALDVF 272 (365)
T ss_pred eEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHH-HhcCCCceEEEccccccHHHHHHhCCEE
Confidence 4666766532 24444444444466788887755444322222111 245553 33332 34467788999999
Q ss_pred EEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 288 FVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 288 lvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++.... + |.-...+=|-.+|+|+++
T Consensus 273 v~ps~~--e--------~~~~~~~Ea~a~g~PvI~ 297 (365)
T cd03807 273 VLSSLS--E--------GFPNVLLEAMACGLPVVA 297 (365)
T ss_pred EeCCcc--c--------cCCcHHHHHHhcCCCEEE
Confidence 887543 1 222334556678999987
No 453
>PRK09148 aminotransferase; Validated
Probab=30.31 E-value=4.2e+02 Score=26.94 Aligned_cols=102 Identities=7% Similarity=0.021 Sum_probs=55.7
Q ss_pred cccC-ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch-------HHHHhc---
Q 016064 213 IFDG-CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS-------AVAYTM--- 281 (396)
Q Consensus 213 I~dg-~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds-------av~~~m--- 281 (396)
+... .+++|.|.+..+..++......|. +|++ + .|.+.+...+. ...|+++..++.. .+-..+
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~-~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILC-P-NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEE-c-CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 3344 688888888776666554444443 4554 3 47766654432 3468887766521 111222
Q ss_pred -ccCCEEEEcc-eeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 -DEVDMVFVGA-DGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 -~~vd~VlvGA-d~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++...|++-- . -..|.+++.-=-..++-+|+++++.+++
T Consensus 163 ~~~~~~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 163 IPKPIALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred cccceEEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 3444444421 1 1336666554445677788888876554
No 454
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=30.24 E-value=5.4e+02 Score=25.27 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=55.6
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
..+++|.|.+..+..++ .+ ..|. +|++ ++ |.+.+.. ..+...|+++..++...+...+.+.+++++--=. -
T Consensus 65 ~~I~it~Gs~~al~~~~-~~-~~gd--~v~v-~~-P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~-N 135 (330)
T PRK05664 65 PQLLPVAGSQAAIQALP-RL-RAPG--RVGV-LS-PCYAEHA--HAWRRAGHQVRELDEAEVEAALDSLDVLVVVNPN-N 135 (330)
T ss_pred CCEEECcCHHHHHHHHH-Hc-cCCC--EEEE-cC-CChHHHH--HHHHHcCCeEEEechhhHhhhhcCCCEEEEeCCc-C
Confidence 35677766665544332 22 2343 4443 33 6665544 3344668988888766666666666654443211 2
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+.|.+++.-==..++-.|+++++. +|+=|.|
T Consensus 136 PTG~~~s~~~l~~l~~~~~~~~~~-iI~DE~y 166 (330)
T PRK05664 136 PTGRRFDPARLLAWHARLAARGGW-LVVDEAF 166 (330)
T ss_pred CCCCccCHHHHHHHHHHHHhcCCE-EEEECCc
Confidence 335555544444555567777873 3334544
No 455
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=30.18 E-value=3.9e+02 Score=26.13 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCEEEEcchHHH----HhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 257 RLANELAKLDVPVKLLIDSAVA----YTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~Dsav~----~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
.++..|...|++|..+.|.... ..+.+=|++|+- ...|. .--+..++-.||+.|+|++.++..
T Consensus 59 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~i----S~sG~---t~~~~~~~~~ak~~g~~vI~iT~~ 125 (321)
T PRK11543 59 KIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFI----SYSGG---AKELDLIIPRLEDKSIALLAMTGK 125 (321)
T ss_pred HHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEE----eCCCC---cHHHHHHHHHHHHcCCeEEEEECC
Confidence 4556667778888877764222 123556666653 33353 233678888999999999998864
No 456
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.16 E-value=1.2e+02 Score=27.04 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 258 LANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 258 la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
+...|...|++|.++.|.. ...+.+=|.+|+-.. .| ..--+..++-.||+.|+|+++++..
T Consensus 48 ~~~~l~~~g~~~~~~~~~~-~~~~~~~Dv~I~iS~----sG---~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 48 FAMRLMHLGFNVYVVGETT-TPSIKKGDLLIAISG----SG---ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred HHHHHHhCCCeEEEeCCcc-cCCCCCCCEEEEEeC----CC---CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 3445666677777776642 223556677665431 12 2333667778899999999999864
No 457
>PRK12939 short chain dehydrogenase; Provisional
Probab=30.12 E-value=1.8e+02 Score=26.53 Aligned_cols=95 Identities=20% Similarity=0.157 Sum_probs=49.8
Q ss_pred CceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-c----hHHHHhc-------c
Q 016064 216 GCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-D----SAVAYTM-------D 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-D----sav~~~m-------~ 282 (396)
+.+||..|.++.+-. +.+...++| .+|+++. |.......+.+++.+.|-++..+. | .++-.++ +
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFND-GLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEe-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567777777665544 334444445 4677664 333334456677766665554432 2 2232233 4
Q ss_pred cCCEEEEcceeEeecCCe-------------eccccHHHHHHHhh
Q 016064 283 EVDMVFVGADGVVESGGI-------------INMMGTYQIALVAH 314 (396)
Q Consensus 283 ~vd~VlvGAd~V~~NG~v-------------~nkiGT~~lAl~Ak 314 (396)
++|.|+..|-... .+.+ .|-.|+..++-++.
T Consensus 84 ~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 127 (250)
T PRK12939 84 GLDGLVNNAGITN-SKSATELDIDTWDAVMNVNVRGTFLMLRAAL 127 (250)
T ss_pred CCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6777776653221 1111 46677766665553
No 458
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.97 E-value=80 Score=29.18 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=26.5
Q ss_pred eeEEE-EeCCC--C---CchhHHHHHHHHhCCCCE---EEEcchHH
Q 016064 241 LFRVL-CTEGR--P---DRSGLRLANELAKLDVPV---KLLIDSAV 277 (396)
Q Consensus 241 ~f~Vi-V~Esr--P---~~eG~~la~~L~~~GI~v---tlI~Dsav 277 (396)
++.|+ |.++| . ...|..+...|.++|..+ ++|+|...
T Consensus 9 ~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~ 54 (169)
T COG0521 9 RIAVVTVSDRRSTGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKE 54 (169)
T ss_pred eEEEEEEecccccCCccccchhHHHHHHHHcCCccceEEEeCCCHH
Confidence 46666 55665 2 447999999999999765 77888643
No 459
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=29.96 E-value=5.9e+02 Score=25.63 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=55.5
Q ss_pred EEeecChHHHHHHHHHHH--HCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcc----------hHHHHhcc---c
Q 016064 219 ILVHGFSRVVMEVLKMAA--QNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLID----------SAVAYTMD---E 283 (396)
Q Consensus 219 ILT~~~S~~V~~~L~~A~--~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~D----------sav~~~m~---~ 283 (396)
++|.|.+..+..++.... ..|. +|+ +|+ |.+.+...+ +...|.++..++. ..+-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~Vl-v~~-P~y~~~~~~--~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--KVW-VSD-PTWPNHRAI--FEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--eEE-ECC-CCcccHHHH--HHHcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 788888887665553322 3343 344 444 777666543 3346777766541 12222222 2
Q ss_pred CCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 284 VDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-+++++=..-=-+.|.++++-=-..++-+|+++++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 245555443334456666666567888889999987764
No 460
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.83 E-value=3.3e+02 Score=24.82 Aligned_cols=75 Identities=21% Similarity=0.110 Sum_probs=42.2
Q ss_pred ccCceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhc------
Q 016064 214 FDGCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTM------ 281 (396)
Q Consensus 214 ~dg~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m------ 281 (396)
.++.++|..|.|+-+-. +.+.+.++|- +|+++. |+......+.+.+.+.|-++.++ .| ..+..++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW--DLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 34567777787665544 4445555554 677765 44444556667776666555443 33 2333333
Q ss_pred -ccCCEEEEcc
Q 016064 282 -DEVDMVFVGA 291 (396)
Q Consensus 282 -~~vd~VlvGA 291 (396)
+++|.++-.|
T Consensus 81 ~~~id~lv~~a 91 (241)
T PRK07454 81 FGCPDVLINNA 91 (241)
T ss_pred cCCCCEEEECC
Confidence 3578877755
No 461
>PRK08068 transaminase; Reviewed
Probab=29.76 E-value=5.2e+02 Score=25.91 Aligned_cols=103 Identities=9% Similarity=0.045 Sum_probs=53.4
Q ss_pred cccC-ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcch----------HHHHhc
Q 016064 213 IFDG-CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS----------AVAYTM 281 (396)
Q Consensus 213 I~dg-~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Ds----------av~~~m 281 (396)
+..+ ++++|.|.+..+..++....+.|. +|++ + .|.+.+...+ +...|+++..++.. ++-..+
T Consensus 91 ~~~~~~i~it~G~~~~l~~~~~~~~~~gd--~vlv-~-~P~y~~~~~~--~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 164 (389)
T PRK08068 91 LDPETEVAILFGGKAGLVELPQCLMNPGD--TILV-P-DPGYPDYLSG--VALARAQFETMPLIAENNFLPDYTKIPEEV 164 (389)
T ss_pred CCCCccEEEcCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEeecccccCCCCCHHHHHHhc
Confidence 3444 577888877776655544333343 4443 3 3666555443 34567777666532 122222
Q ss_pred -ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 -DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 -~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
.++..|++. .-=-+.|.++.+-=-..++-+|+++++.+++
T Consensus 165 ~~~~~~v~l~-~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 165 AEKAKLMYLN-YPNNPTGAVATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred cccceEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 345555543 1102334444444345677678888875554
No 462
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=29.71 E-value=1.3e+02 Score=27.28 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCEEEEcchHHH-HhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 257 RLANELAKLDVPVKLLIDSAVA-YTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 257 ~la~~L~~~GI~vtlI~Dsav~-~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.+++.|.. |+.|.++.-..+. .-+...|.||+|+- +. .|.....+..+.--....-.++||.+.+
T Consensus 20 ~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGsp-i~-~G~~~~~~~~fl~~~~~~l~~K~v~~F~ 85 (177)
T PRK11104 20 YIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGAS-IR-YGHFHSALYKFVKKHATQLNQMPSAFFS 85 (177)
T ss_pred HHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECc-cc-cCCcCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44555655 7777765543322 23567899999984 33 4556555555544444455678988766
No 463
>PRK09135 pteridine reductase; Provisional
Probab=29.65 E-value=1e+02 Score=28.10 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=53.5
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCC-CCEEE-Ecc----hHHHHhc-------
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLD-VPVKL-LID----SAVAYTM------- 281 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~G-I~vtl-I~D----sav~~~m------- 281 (396)
.+.+||..|.++-+-..+.+...+ +..+|+++..+.......+.+.+.+.+ -.+.. ..| ..+..++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~-~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHA-AGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356788888877665544443321 235788776654444555566665432 12222 222 3344333
Q ss_pred ccCCEEEEcceeEee----cCCe--------eccccHHHHHHHhh
Q 016064 282 DEVDMVFVGADGVVE----SGGI--------INMMGTYQIALVAH 314 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~----NG~v--------~nkiGT~~lAl~Ak 314 (396)
.++|.|+-.|-.... +-.. .|-.|+..+.-++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~ 128 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAA 128 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHH
Confidence 357877776632111 0001 58888888887774
No 464
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=29.48 E-value=3.5e+02 Score=22.88 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHH
Q 016064 118 AIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEI 197 (396)
Q Consensus 118 Ai~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~ 197 (396)
....|.+++++.......++.+..........+..|+.-+..|++..+--++.+.+. ++=|+.+.+.++.|.+.
T Consensus 11 ~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~~ls------~~EK~~~~~~i~~yr~g 84 (117)
T PF08349_consen 11 IYRELGRLVANAGKRPLEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKKKLS------SEEKQHFLDLIEDYREG 84 (117)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHcC
Confidence 455667777776666677788888888888888889999999998877777776552 23377777778777643
No 465
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=29.48 E-value=6.1e+02 Score=25.68 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=50.0
Q ss_pred ceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHH-HHHH-HhCCCCEEEEcc-hHHHHhc-ccCCEEEEcce
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRL-ANEL-AKLDVPVKLLID-SAVAYTM-DEVDMVFVGAD 292 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~l-a~~L-~~~GI~vtlI~D-sav~~~m-~~vd~VlvGAd 292 (396)
..+++-|....+..++ .+.+.|. +|++. ++.+.|..- .... ...|+.+++..| ..+...+ ++..+|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 4555555555555555 4554454 56654 345544432 2332 333676666665 3444444 4444444331
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
-.-..|.+. --..++-+|++++++++|
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEE
Confidence 111112222 345667778999999887
No 466
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=29.47 E-value=1.8e+02 Score=30.10 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=40.0
Q ss_pred EcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 272 LIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 272 I~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
.+-.++.++|..-+ +.-|+++.-|.|..-+|+-.---++++|++|+.|..
T Consensus 176 l~PPa~~~ll~~~~---~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVaG 225 (369)
T TIGR00075 176 LVPPAVEALLENPA---VQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIAG 225 (369)
T ss_pred ccHHHHHHHHcCCC---CCccEEEecCEEEEEeccchhHHHHHHcCCCeEEec
Confidence 34567777774433 334788888999999999999999999999999865
No 467
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=29.39 E-value=1.3e+02 Score=30.13 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccc
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESY 327 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~ 327 (396)
+.|.|..|. .++..+++|+.+|+|++.+++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 567776665 34456778899999999876543
No 468
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.32 E-value=1.8e+02 Score=29.09 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=46.3
Q ss_pred EeecChHHHHHHHHHHHH--CCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-ch-HHHHhcccCCEEEEc
Q 016064 220 LVHGFSRVVMEVLKMAAQ--NKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-DS-AVAYTMDEVDMVFVG 290 (396)
Q Consensus 220 LT~~~S~~V~~~L~~A~~--~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-Ds-av~~~m~~vd~VlvG 290 (396)
+.=|--..|.++|++..- .||+.-|+ +|-..-|+-||..|.+.|..|+... -+ .+..+.+++|.|++.
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~vi---Grs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVI---GRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEE---cCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 344445567777766421 36654443 6667779999999999999999884 11 355667888988764
No 469
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.32 E-value=4.2e+02 Score=26.97 Aligned_cols=110 Identities=21% Similarity=0.246 Sum_probs=64.8
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-C---CCC---------chhHHHHHHHHhC--
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-G---RPD---------RSGLRLANELAKL-- 265 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-s---rP~---------~eG~~la~~L~~~-- 265 (396)
++..+++.+.+ .+|+.+|-++.-..++..+...|. ++.++ .+| + |-. ..-..+++.|.+.
T Consensus 125 ~g~~~q~~l~~-~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 125 VGEEGQRRLLE-ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred cCHHHHHHHhc-CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 44445556644 577888887765556666566674 44444 111 1 110 1123446667654
Q ss_pred CCCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEec
Q 016064 266 DVPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 324 (396)
Q Consensus 266 GI~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~a 324 (396)
+++++.+. ...+..+++++|.||-+.|..-. -+.+.-+|+++++|++.+.
T Consensus 204 ~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 204 DVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35554433 23445567899999988886531 3457778999999998764
No 470
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.32 E-value=1.8e+02 Score=28.91 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=29.5
Q ss_pred ceEEeecChHHHHHHHHHHHHCCC-eeEEEEeC-CCCCchhHHHHHHHHhCCCCEEEEc
Q 016064 217 CTILVHGFSRVVMEVLKMAAQNKK-LFRVLCTE-GRPDRSGLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L~~A~~~gk-~f~ViV~E-srP~~eG~~la~~L~~~GI~vtlI~ 273 (396)
-.||.-|+.+..+.++ .|.+.|. ..+|.++= .+|...+. ..+.|||+.+++
T Consensus 92 i~vl~Sg~g~nl~al~-~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~ 144 (286)
T PRK13011 92 VLIMVSKFDHCLNDLL-YRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFP 144 (286)
T ss_pred EEEEEcCCcccHHHHH-HHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeC
Confidence 3556656555555555 5555554 46666443 36653222 556799998873
No 471
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=29.30 E-value=2.1e+02 Score=27.12 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEc
Q 016064 256 LRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVG 290 (396)
Q Consensus 256 ~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvG 290 (396)
..+++.|.+.|+.+.+++.... .++++|.+++.
T Consensus 15 ~~~~~al~~~G~~~~~i~~~~~--~l~~~d~lilp 47 (227)
T TIGR01737 15 RDTVYALRLLGVDAEIVWYEDG--SLPDYDGVVLP 47 (227)
T ss_pred HHHHHHHHHCCCeEEEEecCCC--CCCCCCEEEEC
Confidence 4568889999999888875432 25788887774
No 472
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=29.23 E-value=2.1e+02 Score=26.42 Aligned_cols=87 Identities=23% Similarity=0.161 Sum_probs=51.9
Q ss_pred cChHHHHHHHHHHHHCCCeeEEE---EeCCCCC-chhHHHHHHHHhCCCCEEEEcchHHHHhcc-cCCEEEEcceeEee-
Q 016064 223 GFSRVVMEVLKMAAQNKKLFRVL---CTEGRPD-RSGLRLANELAKLDVPVKLLIDSAVAYTMD-EVDMVFVGADGVVE- 296 (396)
Q Consensus 223 ~~S~~V~~~L~~A~~~gk~f~Vi---V~EsrP~-~eG~~la~~L~~~GI~vtlI~Dsav~~~m~-~vd~VlvGAd~V~~- 296 (396)
|.|..=..+|+.+ |-.|+|+ +.|+.+. ..-..++..|+..+- -.+.. .-+.+++|||.|..
T Consensus 9 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka----------~~v~~~~~~~~vI~aDTvV~~ 75 (183)
T TIGR00172 9 SQSPRRKELLEEL---GISFEQIVSEFDEKSLKTTSPRELVYRLAKEKA----------QAVAELLADALIIGADTVVIL 75 (183)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEEE
Confidence 3344333455443 8889988 4454322 234566777776441 11111 13569999999766
Q ss_pred cCCeeccccHHHHH--HHhhhCCCcEEE
Q 016064 297 SGGIINMMGTYQIA--LVAHSMNKPVYV 322 (396)
Q Consensus 297 NG~v~nkiGT~~lA--l~Ak~~~vPvyV 322 (396)
||.++.|-.+..=| ++-+-.|....|
T Consensus 76 ~g~ilgKP~~~~eA~~~L~~lsG~~h~V 103 (183)
T TIGR00172 76 DGEIYGKPKDKEEAAEFLRKLSGQEHEV 103 (183)
T ss_pred CCEEecCCCCHHHHHHHHHHhCCCCcEE
Confidence 99999999998766 334445554443
No 473
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=29.22 E-value=1.2e+02 Score=26.76 Aligned_cols=50 Identities=26% Similarity=0.370 Sum_probs=32.7
Q ss_pred ccccCceEEeecCh---HHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhC
Q 016064 212 FIFDGCTILVHGFS---RVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKL 265 (396)
Q Consensus 212 ~I~dg~~ILT~~~S---~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~ 265 (396)
.+.+.++|.|.|+. ......|+.|.+ .-.||++ +-|...|.++.+.|.++
T Consensus 26 ~~~~~~~i~~~g~~i~~~~~ie~i~~~~~---~k~VIIL-TD~D~~Ge~Irk~l~~~ 78 (127)
T COG1658 26 RLGDAGVIITNGSAINSLETIELIKKAQK---YKGVIIL-TDPDRKGERIRKKLKEY 78 (127)
T ss_pred HhcCCceEEEcCCccchHHHHHHHHHhhc---cCCEEEE-eCCCcchHHHHHHHHHH
Confidence 34456788888874 334445555543 3356655 66899999999888764
No 474
>PRK07411 hypothetical protein; Validated
Probab=29.13 E-value=5e+02 Score=26.79 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=64.4
Q ss_pred HHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeC-CCCCch--------h----HHHHHHHHhCC--
Q 016064 206 AMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTE-GRPDRS--------G----LRLANELAKLD-- 266 (396)
Q Consensus 206 a~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~E-srP~~e--------G----~~la~~L~~~G-- 266 (396)
+..+++.|++ .+||..|-++.=-.+++.....|- ++.++ ++| |.-..| | ..+++.|.+.+
T Consensus 29 g~~~q~~L~~-~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~ 107 (390)
T PRK07411 29 GLEGQKRLKA-ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY 107 (390)
T ss_pred CHHHHHHHhc-CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence 3344445544 588888888765555555555573 45555 333 221111 2 23466777654
Q ss_pred CCEEEEcc----hHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 VPVKLLID----SAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 I~vtlI~D----sav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+.. .....+++++|.|+-+.|..- --+.+.-+|...++|++..
T Consensus 108 v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 108 CQVDLYETRLSSENALDILAPYDVVVDGTDNFP---------TRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred CeEEEEecccCHHhHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 56655553 223456789999999988542 2355667788899999854
No 475
>PRK11071 esterase YqiA; Provisional
Probab=29.01 E-value=4.4e+02 Score=23.88 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=46.0
Q ss_pred eEEeecChHHHHH----HHHHHH-HCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcce
Q 016064 218 TILVHGFSRVVME----VLKMAA-QNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD 292 (396)
Q Consensus 218 ~ILT~~~S~~V~~----~L~~A~-~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd 292 (396)
+|+.||+.+.... .+.... +.+..++|++.+-+.. |..++..+.+ +-.....-+.+++|
T Consensus 4 illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~--~~~~~~~l~~------------l~~~~~~~~~~lvG-- 67 (190)
T PRK11071 4 LLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY--PADAAELLES------------LVLEHGGDPLGLVG-- 67 (190)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC--HHHHHHHHHH------------HHHHcCCCCeEEEE--
Confidence 7889997543221 233332 3356799998886643 4444433321 00001122345555
Q ss_pred eEeecCCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 293 GVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 293 ~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
+..|.+....+|..++.+++++++...
T Consensus 68 ---------~S~Gg~~a~~~a~~~~~~~vl~~~~~~ 94 (190)
T PRK11071 68 ---------SSLGGYYATWLSQCFMLPAVVVNPAVR 94 (190)
T ss_pred ---------ECHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 345666666666666667776666544
No 476
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.99 E-value=3.3e+02 Score=24.57 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=41.2
Q ss_pred CceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhc-------c
Q 016064 216 GCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTM-------D 282 (396)
Q Consensus 216 g~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m-------~ 282 (396)
+.+||..|.|+-+-. +.+...++|- +|+++...|. ....+...+.+.|.+++.+ .| .++..++ .
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEE-AAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChh-HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457777787766544 4444455554 4666655443 3445567777777655443 22 2233333 4
Q ss_pred cCCEEEEcce
Q 016064 283 EVDMVFVGAD 292 (396)
Q Consensus 283 ~vd~VlvGAd 292 (396)
.+|.|+..|-
T Consensus 82 ~id~vi~~ag 91 (246)
T PRK05653 82 ALDILVNNAG 91 (246)
T ss_pred CCCEEEECCC
Confidence 5688777663
No 477
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=28.92 E-value=5.9e+02 Score=25.33 Aligned_cols=102 Identities=19% Similarity=0.052 Sum_probs=51.7
Q ss_pred cCceEEeecChHHHHHHHHHHHH----CCCeeEEEEeCC-CCCchhHHHHHHHHhCCCCEEEEcc--------hHHHHhc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQ----NKKLFRVLCTEG-RPDRSGLRLANELAKLDVPVKLLID--------SAVAYTM 281 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~----~gk~f~ViV~Es-rP~~eG~~la~~L~~~GI~vtlI~D--------sav~~~m 281 (396)
..++++|.|-+..+..++..+.. .+..-+|++.+. .|-.. .....+...|+++..++- ..+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~--~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVR--ATCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHH--HHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34577776655555544543321 122235666653 23332 223456678999888752 1233333
Q ss_pred c-cCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 282 D-EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 282 ~-~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
. +...|++. ..=...|.+.. + ..++-+|++++++++|
T Consensus 138 ~~~t~lv~~~-~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSVM-WANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEEE-cccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 33333332 11112333332 2 3577788999998876
No 478
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=28.86 E-value=2.5e+02 Score=29.32 Aligned_cols=71 Identities=7% Similarity=0.147 Sum_probs=46.9
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGA 291 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGA 291 (396)
.|.+||.+|.++.-..+...+...|-. +++|+ +|-...+..++.++.. . ..++-......+.++|.||.+.
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~-~I~V~-nRt~~ra~~La~~~~~--~--~~~~~~~l~~~l~~aDiVI~aT 250 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPK-QIMLA-NRTIEKAQKITSAFRN--A--SAHYLSELPQLIKKADIIIAAV 250 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCC-EEEEE-CCCHHHHHHHHHHhcC--C--eEecHHHHHHHhccCCEEEECc
Confidence 467999999999888888877766632 44444 4433345555555421 2 3444456677889999999865
No 479
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=28.75 E-value=95 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=21.3
Q ss_pred eEEeecChHHH---HHHHHHHHHCCCeeEEEEeCCC
Q 016064 218 TILVHGFSRVV---MEVLKMAAQNKKLFRVLCTEGR 250 (396)
Q Consensus 218 ~ILT~~~S~~V---~~~L~~A~~~gk~f~ViV~Esr 250 (396)
++|-.+.|..+ ..+++.+.+.|-.++|+++++.
T Consensus 4 Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 4 ILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 45555655543 3566666666877888888764
No 480
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=28.69 E-value=3.5e+02 Score=28.73 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccccCceEEe--ecChHHHHHHHHHHHHCCCeeEEEEeCCCCCc----hhHHHHHHHHhCCCCE
Q 016064 196 EISYKARKIIAMLSQDFIFDGCTILV--HGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDR----SGLRLANELAKLDVPV 269 (396)
Q Consensus 196 e~~~~a~~~Ia~~a~~~I~dg~~ILT--~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~----eG~~la~~L~~~GI~v 269 (396)
+.+....-+....|.+.| .|.| +-.+..+...|..|.++|.+.++++.+..-.. .++...++|.+.|+++
T Consensus 317 ~~~~~~~~~~I~~A~~~I----~I~tpYfip~~~i~~aL~~Aa~rGV~Vril~p~~~d~~~~~~~~~~~~~~L~~~Gv~I 392 (483)
T PRK01642 317 ETIHQFLLTAIYSARERL----WITTPYFVPDEDLLAALKTAALRGVDVRIIIPSKNDSLLVFWASRAFFTELLEAGVKI 392 (483)
T ss_pred hHHHHHHHHHHHHhccEE----EEEcCCcCCCHHHHHHHHHHHHcCCEEEEEeCCCCCcHHHHHHHHHHHHHHHHcCCEE
Q ss_pred EEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHH
Q 016064 270 KLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQI 309 (396)
Q Consensus 270 tlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~l 309 (396)
...... ++=|..+.-||.+ .-+||.++
T Consensus 393 ~~y~~~------------~~HaK~~ivD~~~-~~vGS~N~ 419 (483)
T PRK01642 393 YRYEGG------------LLHTKSVLVDDEL-ALVGTVNL 419 (483)
T ss_pred EEeCCC------------ceEeEEEEECCCE-EEeeCCcC
No 481
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=28.67 E-value=5.3e+02 Score=24.71 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=32.5
Q ss_pred hccccCceEEe-ecC---hHHHHHHHHHHHHC-CCeeEEEE--eCC-CCCchhHHHHHH-HHhCCCCEEEEc
Q 016064 211 DFIFDGCTILV-HGF---SRVVMEVLKMAAQN-KKLFRVLC--TEG-RPDRSGLRLANE-LAKLDVPVKLLI 273 (396)
Q Consensus 211 ~~I~dg~~ILT-~~~---S~~V~~~L~~A~~~-gk~f~ViV--~Es-rP~~eG~~la~~-L~~~GI~vtlI~ 273 (396)
.+|.+|+.|+. +|. |.+++.+|....+. +..|+|++ ++. -+... .+.+++ ..+.||++..+.
T Consensus 24 ~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~-~~~~~~~~~~lgI~~~v~~ 94 (258)
T PRK10696 24 NMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFP-EHVLPEYLESLGVPYHIEE 94 (258)
T ss_pred CCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCC-HHHHHHHHHHhCCCEEEEE
Confidence 46788886665 333 33455555554433 33456553 232 22222 234344 467899988764
No 482
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=28.67 E-value=1.1e+02 Score=27.65 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=41.6
Q ss_pred hccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCC----CCchhHHHHHHHHhCCCCEEEEc
Q 016064 211 DFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGR----PDRSGLRLANELAKLDVPVKLLI 273 (396)
Q Consensus 211 ~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~Esr----P~~eG~~la~~L~~~GI~vtlI~ 273 (396)
++|+|-..|+.|+.-++++..| +.+|..-|+.=+++ -...-.++|.+|++.|..++.-+
T Consensus 61 sli~darIVISHaG~GSIL~~~----rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 61 SLIHDARIVISHAGEGSILLLL----RLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred HHhhcceEEEeccCcchHHHHh----hcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 4678888899999988765444 45777776655553 23445677999999988776653
No 483
>PRK09134 short chain dehydrogenase; Provisional
Probab=28.63 E-value=2.1e+02 Score=26.60 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=52.5
Q ss_pred cCceEEeecChHHHHHHHH-HHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc-c----hHHHHhc-------
Q 016064 215 DGCTILVHGFSRVVMEVLK-MAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI-D----SAVAYTM------- 281 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~-~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~-D----sav~~~m------- 281 (396)
.+.++|..|-|+-+-.-|. ...+.| .+|+++..+.......+..++...|-.+..+. | .++..++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG--FDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4567777788776655443 333445 46766555444444566677766666555432 3 2333333
Q ss_pred ccCCEEEEcceeEeecCC-------------eeccccHHHHHHHhhh
Q 016064 282 DEVDMVFVGADGVVESGG-------------IINMMGTYQIALVAHS 315 (396)
Q Consensus 282 ~~vd~VlvGAd~V~~NG~-------------v~nkiGT~~lAl~Ak~ 315 (396)
+++|.||--|-. ...+. -+|-.|++.++-.+..
T Consensus 86 ~~iD~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 131 (258)
T PRK09134 86 GPITLLVNNASL-FEYDSAASFTRASWDRHMATNLRAPFVLAQAFAR 131 (258)
T ss_pred CCCCEEEECCcC-CCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346777665521 11111 1466688777765543
No 484
>PRK06823 ornithine cyclodeaminase; Validated
Probab=28.59 E-value=4.1e+02 Score=26.61 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=52.6
Q ss_pred Hhhcc-c-cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCE
Q 016064 209 SQDFI-F-DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDM 286 (396)
Q Consensus 209 a~~~I-~-dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~ 286 (396)
+.+++ + +-.++..+|.......-++....-...-+|.|- +|-...-..++..+.+.|+++....+ .......+|.
T Consensus 119 a~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~ADI 195 (315)
T PRK06823 119 VARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVW-GRSETALEEYRQYAQALGFAVNTTLD--AAEVAHAANL 195 (315)
T ss_pred HHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhcCCcEEEECC--HHHHhcCCCE
Confidence 34445 2 345666666655444333322221222234444 33333345677778777998876644 3444588998
Q ss_pred EEEc---ceeE-----eecCCeeccccHHH
Q 016064 287 VFVG---ADGV-----VESGGIINMMGTYQ 308 (396)
Q Consensus 287 VlvG---Ad~V-----~~NG~v~nkiGT~~ 308 (396)
|+.. .+-+ +..|..+|-+|++.
T Consensus 196 V~taT~s~~P~~~~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 196 IVTTTPSREPLLQAEDIQPGTHITAVGADS 225 (315)
T ss_pred EEEecCCCCceeCHHHcCCCcEEEecCCCC
Confidence 8762 2222 24688888888753
No 485
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.55 E-value=3.5e+02 Score=24.87 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=37.7
Q ss_pred ceEEeecChHHHHHHH-HHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEE-cc----hHHHHhc-------cc
Q 016064 217 CTILVHGFSRVVMEVL-KMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLL-ID----SAVAYTM-------DE 283 (396)
Q Consensus 217 ~~ILT~~~S~~V~~~L-~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI-~D----sav~~~m-------~~ 283 (396)
.+||..|-|+.+-.-| +...++| .+|+++..++..........+...+.++.++ .| ..+..++ +.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG--FDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC--CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 3566667666554433 3334444 4677665544333344555666555555443 22 2232233 46
Q ss_pred CCEEEEcc
Q 016064 284 VDMVFVGA 291 (396)
Q Consensus 284 vd~VlvGA 291 (396)
+|.|+-.|
T Consensus 81 id~vi~~a 88 (256)
T PRK12745 81 IDCLVNNA 88 (256)
T ss_pred CCEEEECC
Confidence 77777765
No 486
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.55 E-value=2e+02 Score=29.40 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=61.3
Q ss_pred cCceEEeecChHH---HHHHHHHHHHCCC-eeEEEEeCCCCCchhHHHHHHHHhCC-CCEEEEcchHHHHhcccCCEEEE
Q 016064 215 DGCTILVHGFSRV---VMEVLKMAAQNKK-LFRVLCTEGRPDRSGLRLANELAKLD-VPVKLLIDSAVAYTMDEVDMVFV 289 (396)
Q Consensus 215 dg~~ILT~~~S~~---V~~~L~~A~~~gk-~f~ViV~EsrP~~eG~~la~~L~~~G-I~vtlI~Dsav~~~m~~vd~Vlv 289 (396)
+-.+||+.|.|.- +..++..+....+ .+.|+..=+.... .++...+.+.| +.|....|. +..+|..+|.||
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~--~~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLvI- 257 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDL--EELKSAYNELGVVRVLPFIDD-MAALLAAADLVI- 257 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchH--HHHHHHHhhcCcEEEeeHHhh-HHHHHHhccEEE-
Confidence 5679999999874 3445555544333 4777755443322 24455666667 555555555 667788888864
Q ss_pred cceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064 290 GADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYK 328 (396)
Q Consensus 290 GAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K 328 (396)
.|.|..+++-++ ..++|.+.+-..+.
T Consensus 258 ------------sRaGa~Ti~E~~-a~g~P~IliP~p~~ 283 (357)
T COG0707 258 ------------SRAGALTIAELL-ALGVPAILVPYPPG 283 (357)
T ss_pred ------------eCCcccHHHHHH-HhCCCEEEeCCCCC
Confidence 577777777644 46899998765544
No 487
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=28.53 E-value=3.5e+02 Score=27.24 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=18.2
Q ss_pred HHhhcccc-CceEEeecChHHHHHHHHH
Q 016064 208 LSQDFIFD-GCTILVHGFSRVVMEVLKM 234 (396)
Q Consensus 208 ~a~~~I~d-g~~ILT~~~S~~V~~~L~~ 234 (396)
+-++++.. -++|+|||+.-.|-.....
T Consensus 34 ~ia~l~~~g~~vviv~gngpqvG~~~l~ 61 (310)
T TIGR00746 34 QIAKLIKRGYELVITHGNGPQVGNLLLQ 61 (310)
T ss_pred HHHHHHHCCCEEEEEECChHHHHHHHhc
Confidence 33445554 4799999999887665543
No 488
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=28.52 E-value=1.9e+02 Score=29.79 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhH----HHHHHHHhC--CCCEEEEcchH--HHHhcccCCEEEEcceeEe
Q 016064 224 FSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGL----RLANELAKL--DVPVKLLIDSA--VAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 224 ~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~----~la~~L~~~--GI~vtlI~Dsa--v~~~m~~vd~VlvGAd~V~ 295 (396)
+..++..+++.|.+.+...-+-+.++.=.+-|. .+++.+++. .+||.+-.|.+ ...++.-++ .|-.+|+
T Consensus 25 n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~---~GFtSVM 101 (347)
T TIGR01521 25 NMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSVM 101 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEEe
Confidence 455677788777665554433344432222332 345555543 38999999976 333444434 4999999
Q ss_pred ecCCee-----------ccccHHHHHHHhhhCCCcEE
Q 016064 296 ESGGII-----------NMMGTYQIALVAHSMNKPVY 321 (396)
Q Consensus 296 ~NG~v~-----------nkiGT~~lAl~Ak~~~vPvy 321 (396)
-||+-. |-.=|-.++-.|+.+|+.|=
T Consensus 102 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 102 MDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred ecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 999998 88889999999999999873
No 489
>PRK12342 hypothetical protein; Provisional
Probab=28.41 E-value=3e+02 Score=26.89 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=57.7
Q ss_pred ceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCC-CCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeE
Q 016064 217 CTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGR-PDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGV 294 (396)
Q Consensus 217 ~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~Esr-P~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V 294 (396)
-+++|+|..+.-.. ++++|...|-.--|.+.+.. ........|+.|++ ++-. + ..|.||.|-.++
T Consensus 54 Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~-----------~i~~-~-~~DLVl~G~~s~ 120 (254)
T PRK12342 54 IAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAA-----------AIEK-I-GFDLLLFGEGSG 120 (254)
T ss_pred EEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHH-----------HHHH-h-CCCEEEEcCCcc
Confidence 37799998776555 56778887876555555332 11222233555543 1222 1 489999998777
Q ss_pred eecCCeeccccHHHHHHHhhhCCCcEEEeccccccc
Q 016064 295 VESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFA 330 (396)
Q Consensus 295 ~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~ 330 (396)
-.+.+-+ =+++|...+.|++-.+...++.
T Consensus 121 D~~tgqv-------g~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 121 DLYAQQV-------GLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred cCCCCCH-------HHHHHHHhCCCcEeeEEEEEEe
Confidence 6654422 3578899999998766555543
No 490
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=28.40 E-value=3.2e+02 Score=31.35 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016064 133 TMMELEIELKKASDSLKSWDTTS--------ISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKI 204 (396)
Q Consensus 133 t~~eL~~~L~~~~~~L~~aRPt~--------v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~ 204 (396)
.+++|.+.|+.+.+-+...+|.. -.|.|++++++ |+.+.+-.-..+++++-+..+.+|+++..++...-+.
T Consensus 162 d~~~le~NL~~a~~NM~~~~~l~l~~~~~~N~~LVn~~NKLv-YLGrli~av~~SW~~Le~kcl~rI~el~~~L~~elr~ 240 (839)
T PF06070_consen 162 DVQELEENLRAARSNMFWYTPLKLNLDRHENGPLVNAINKLV-YLGRLIVAVSTSWEELEEKCLSRINELCKRLVKELRR 240 (839)
T ss_pred HHHHHHHHHHHHHhccEEEEeeecccccccCccHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888877776655433 33455555433 4444322122457888888888888888777777766
Q ss_pred HHHHHhhcccc--CceEEeecChHHHHHHHH
Q 016064 205 IAMLSQDFIFD--GCTILVHGFSRVVMEVLK 233 (396)
Q Consensus 205 Ia~~a~~~I~d--g~~ILT~~~S~~V~~~L~ 233 (396)
+-.+.+.++.+ .-.| +.-.+.++++.|.
T Consensus 241 ~~~F~~~Y~~niLk~~V-dg~s~~~lL~~L~ 270 (839)
T PF06070_consen 241 NRSFESNYCRNILKHPV-DGESVDSLLEMLT 270 (839)
T ss_pred CCcHHHHHHHHHHhCcC-CcccHHHHHHHHH
Confidence 65554444332 0122 5444555555443
No 491
>PRK12828 short chain dehydrogenase; Provisional
Probab=28.16 E-value=2.8e+02 Score=25.00 Aligned_cols=108 Identities=12% Similarity=-0.022 Sum_probs=55.2
Q ss_pred cCceEEeecChHHHHHHH-HHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEc---chHHHHhc-------cc
Q 016064 215 DGCTILVHGFSRVVMEVL-KMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLI---DSAVAYTM-------DE 283 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L-~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~---Dsav~~~m-------~~ 283 (396)
.|.+||..|-|+.+-..+ +.+.++| .+|+++...|.. ..+...++...+..+.... ...+..++ +.
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAAP-LSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChHh-HHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 367888888877665444 4444444 467777665532 2344455655555433211 12233333 35
Q ss_pred CCEEEEcceeEeecCC-------------eeccccHHHHHHHhh----hCCCcEEEeccc
Q 016064 284 VDMVFVGADGVVESGG-------------IINMMGTYQIALVAH----SMNKPVYVAAES 326 (396)
Q Consensus 284 vd~VlvGAd~V~~NG~-------------v~nkiGT~~lAl~Ak----~~~vPvyV~aes 326 (396)
+|.|+-.|-.. ..+. -.|-.|++.++-++. ..+++.+|...+
T Consensus 83 ~d~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAF-VWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCccc-CcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 77777654322 1111 155667776655442 334555554444
No 492
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=28.08 E-value=2e+02 Score=28.07 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=44.6
Q ss_pred HHHHhhcc-ccCceEEe---ecChHHHHHHHHHHHHCCCeeE--EEEeCCCCCchhHHHHHHHHhCCCCEEEE
Q 016064 206 AMLSQDFI-FDGCTILV---HGFSRVVMEVLKMAAQNKKLFR--VLCTEGRPDRSGLRLANELAKLDVPVKLL 272 (396)
Q Consensus 206 a~~a~~~I-~dg~~ILT---~~~S~~V~~~L~~A~~~gk~f~--ViV~EsrP~~eG~~la~~L~~~GI~vtlI 272 (396)
+-|++-+. .+|..++. +|+..++-+++-.|..+|..+. ++++=+| ...+|+......|||+..-
T Consensus 158 gvH~aal~~~~g~~l~~~EDIGRHNAvDKviG~all~g~~~~~~~l~~SGR---~s~emv~Ka~~aGipvivS 227 (263)
T PRK00724 158 GVHAAALLCPDGELLAVREDVGRHNALDKLIGAALRAGIPLRDGALLVSGR---ASSEMVQKAAMAGIPILVA 227 (263)
T ss_pred ceeEEEEEcCCCCEEEEEecCchhHHHHHHHHHHHHcCCCccCcEEEEeCC---chHHHHHHHHHcCCcEEEE
Confidence 44666655 45655555 5788899999988888776543 5555555 3458888999999987553
No 493
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.06 E-value=2e+02 Score=27.86 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=27.2
Q ss_pred hhHHHHHHHHhCCCCEEEEcch-HHHHh--cccCCEEEEccee
Q 016064 254 SGLRLANELAKLDVPVKLLIDS-AVAYT--MDEVDMVFVGADG 293 (396)
Q Consensus 254 eG~~la~~L~~~GI~vtlI~Ds-av~~~--m~~vd~VlvGAd~ 293 (396)
.|..+.+.|.+.|++|.+|... ..... ..++|.||...++
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g 66 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHG 66 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCC
Confidence 5788899999999998888533 22222 2468888876543
No 494
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.04 E-value=4e+02 Score=27.98 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=47.9
Q ss_pred CceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEe
Q 016064 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVV 295 (396)
Q Consensus 216 g~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~ 295 (396)
|..|+.+|...+=....+-+.+.| .+|++.|.++...-.. ..+|.+ ++...+...+ . -.+..+|.||+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g--~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~-~-~~~~~~d~vV~Sp---- 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL--PAQALTLFCNAVEARE-VGALAD-AALLVETEAS-A-QRLAAFDVVVKSP---- 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC--CEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCC-h-HHccCCCEEEECC----
Confidence 567888776543222333333334 5688889876543222 334655 4433333222 1 2346788877754
Q ss_pred ecCCeeccccHHHHHHHhhhCCCcEEE
Q 016064 296 ESGGIINMMGTYQIALVAHSMNKPVYV 322 (396)
Q Consensus 296 ~NG~v~nkiGT~~lAl~Ak~~~vPvyV 322 (396)
++-- +.+.-..|++.++|++-
T Consensus 78 ---gI~~---~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 78 ---GISP---YRPEALAAAARGTPFIG 98 (468)
T ss_pred ---CCCC---CCHHHHHHHHcCCcEEE
Confidence 2211 23455666777777764
No 495
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=27.99 E-value=4.7e+02 Score=26.94 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=63.6
Q ss_pred HHHHHhhccccCceEEeecChHHHHHHHHHHHHCCC-eeEEE---EeCC----CCCc-----hh----HHHHHHHHhCC-
Q 016064 205 IAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK-LFRVL---CTEG----RPDR-----SG----LRLANELAKLD- 266 (396)
Q Consensus 205 Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk-~f~Vi---V~Es----rP~~-----eG----~~la~~L~~~G- 266 (396)
++..+.+.+.+ .+||..|-.+.=-.+++.....|- ++.++ ++|- |-.. -| ..+++.|.+..
T Consensus 32 ~g~~~q~~L~~-~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 110 (392)
T PRK07878 32 VGVDGQKRLKN-ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINP 110 (392)
T ss_pred cCHHHHHHHhc-CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCC
Confidence 44455556555 578888887765555555555574 34444 2221 1111 12 12355666654
Q ss_pred -CCEEEEc----chHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEe
Q 016064 267 -VPVKLLI----DSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVA 323 (396)
Q Consensus 267 -I~vtlI~----Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ 323 (396)
++++.+. ...+..+++.+|.|+.+.|.+. --+.+.-+|..+++|++..
T Consensus 111 ~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 111 LVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFA---------TRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred CcEEEEEeccCChhHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 5554443 2234456789999998876642 3456778889999997653
No 496
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.99 E-value=3.1e+02 Score=30.13 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=60.1
Q ss_pred cCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHHHhCCCCEEE--Ecc-hH-HHHhcccCCEEEEc
Q 016064 215 DGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKL--LID-SA-VAYTMDEVDMVFVG 290 (396)
Q Consensus 215 dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L~~~GI~vtl--I~D-sa-v~~~m~~vd~VlvG 290 (396)
.+.+||..|.++-+-.-|.++..+....+|+++...+. .....+...+++... +.| .. +..++.++|.||=.
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~----~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHl 389 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD----AISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPL 389 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch----hhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEEC
Confidence 46789999998877666655443222367776653331 111112222333321 122 12 34456789988854
Q ss_pred ceeEeecCC--------eeccccHHHHHHHhhhCCCcEEEeccc
Q 016064 291 ADGVVESGG--------IINMMGTYQIALVAHSMNKPVYVAAES 326 (396)
Q Consensus 291 Ad~V~~NG~--------v~nkiGT~~lAl~Ak~~~vPvyV~aes 326 (396)
|-....... -.|-.||..+.-+|+.++++|+.+..+
T Consensus 390 Aa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~ 433 (660)
T PRK08125 390 VAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTS 433 (660)
T ss_pred ccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcch
Confidence 432111001 146789999999999998887655543
No 497
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=27.98 E-value=2.4e+02 Score=24.42 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=21.9
Q ss_pred eEEeecChHHHHHHHHHHHHC----CCeeEEEEeCCCCCchhHHHHHHHHh
Q 016064 218 TILVHGFSRVVMEVLKMAAQN----KKLFRVLCTEGRPDRSGLRLANELAK 264 (396)
Q Consensus 218 ~ILT~~~S~~V~~~L~~A~~~----gk~f~ViV~EsrP~~eG~~la~~L~~ 264 (396)
+|.||..+..+..+|....+. ...++|+|++.....+....++.+.+
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~ 52 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA 52 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHh
Confidence 345555555544444332211 23456665555444444444555443
No 498
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=27.91 E-value=7e+02 Score=25.89 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhccc---cCceEEeecChHHHHHHHHHH---HHCCCeeEEEEeCCCCCchhHHH-HHHHHhC-CCCE
Q 016064 198 SYKARKIIAMLSQDFIF---DGCTILVHGFSRVVMEVLKMA---AQNKKLFRVLCTEGRPDRSGLRL-ANELAKL-DVPV 269 (396)
Q Consensus 198 ~~~a~~~Ia~~a~~~I~---dg~~ILT~~~S~~V~~~L~~A---~~~gk~f~ViV~EsrP~~eG~~l-a~~L~~~-GI~v 269 (396)
...+++.+++ +|. ..++|+|-+-+..+..+.... .+.| -+|++++-. ..+-.. -.+|++. |..|
T Consensus 68 ~e~aRe~va~----~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~g--deIv~s~~E--H~sn~~pw~~~~~~~Ga~v 139 (405)
T COG0520 68 YEAAREAVAR----FLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG--DEIVVSDLE--HHSNIVPWQELAKRTGAKV 139 (405)
T ss_pred HHHHHHHHHH----HhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCC--CEEEEccCc--chhhHHHHHHHHHhcCcEE
Confidence 4456666665 443 255777777666655555443 2334 577777643 112233 4455554 9999
Q ss_pred EEEcc--h------HHHHhc-ccCCEEEEcceeEeecCCeeccccH----HHHHHHhhhCCCcEEE
Q 016064 270 KLLID--S------AVAYTM-DEVDMVFVGADGVVESGGIINMMGT----YQIALVAHSMNKPVYV 322 (396)
Q Consensus 270 tlI~D--s------av~~~m-~~vd~VlvGAd~V~~NG~v~nkiGT----~~lAl~Ak~~~vPvyV 322 (396)
++++- . .....+ ++...|.+. .+.|..|+ -.++-+||++|..|+|
T Consensus 140 ~~i~~~~~g~~~~~~~~~~i~~~Tklvais--------~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 140 RVIPLDDDGLLDLDALEKLITPKTKLVALS--------HVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred EEEecCCCCCcCHHHHHHhcCCCceEEEEE--------CccccccccchHHHHHHHHHHcCCEEEE
Confidence 99982 1 122233 334445443 34455554 3588999999988877
No 499
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=27.85 E-value=5.3e+02 Score=24.44 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=53.2
Q ss_pred cccCceEEeecChHHHHH-HHHHHHHCCCeeEEEEeCCC---CC-chhHHHHHHHHhCC-CCEEEEcchHH---HHhc--
Q 016064 213 IFDGCTILVHGFSRVVME-VLKMAAQNKKLFRVLCTEGR---PD-RSGLRLANELAKLD-VPVKLLIDSAV---AYTM-- 281 (396)
Q Consensus 213 I~dg~~ILT~~~S~~V~~-~L~~A~~~gk~f~ViV~Esr---P~-~eG~~la~~L~~~G-I~vtlI~Dsav---~~~m-- 281 (396)
...|-+|++ |...-|-. ..+.|.+.| ...|.|+-+. .+ .+-+.+.+++.+.| +=++..+...- ..++
T Consensus 71 ~~~g~~IVS-G~A~GiD~~ah~~al~~~-g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~R 148 (220)
T TIGR00732 71 AKNGVTIVS-GLALGIDGIAHKAALKVN-GRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKR 148 (220)
T ss_pred HhCCCEEEc-CchhhHHHHHHHHHHHcC-CCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHH
Confidence 345666665 44333332 333444433 2333344332 11 23456677777776 44444433221 0111
Q ss_pred -----ccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecc
Q 016064 282 -----DEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAE 325 (396)
Q Consensus 282 -----~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~ae 325 (396)
.-.+.||+ +++| -+.||...|-.|.+.|+|||++-.
T Consensus 149 Nriia~ls~~viv-----ve~~---~~sGtl~ta~~A~~~gr~v~~~pg 189 (220)
T TIGR00732 149 NRIISGLSRAVLV-----VEAP---LKSGALITARYALEQGREVFAYPG 189 (220)
T ss_pred HHHHHHhcCEEEE-----EECC---CCCchHHHHHHHHHhCCcEEEEcC
Confidence 12343332 2223 367999999999999999999743
No 500
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.78 E-value=1.4e+02 Score=31.53 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=41.1
Q ss_pred CceEEeecChH--HHHHHHHHHHHCCCeeEEEEeCCCCCchhHHHHHHH-HhCCC--CEEEEcchHHHHhc-ccCCEEE
Q 016064 216 GCTILVHGFSR--VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANEL-AKLDV--PVKLLIDSAVAYTM-DEVDMVF 288 (396)
Q Consensus 216 g~~ILT~~~S~--~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~la~~L-~~~GI--~vtlI~Dsav~~~m-~~vd~Vl 288 (396)
+.+||..|-.+ .+..+++.+++.+...+||.+|-.|.. ....+.+ ...|. .|++|...+=-.-. .+||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A--~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA--VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH--HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH--HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899988655 455566665666788999999988753 1223333 55554 57777654322222 2566654
Done!