Query 016065
Match_columns 396
No_of_seqs 231 out of 2523
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 1.5E-20 5E-25 181.3 3.8 207 129-362 95-341 (367)
2 1gvn_A Epsilon; postsegregatio 11.6 2.4E+02 0.0083 21.0 3.7 43 342-384 34-76 (90)
3 2lnd_A De novo designed protei 10.9 1.7E+02 0.0058 21.5 2.7 29 246-276 37-65 (112)
4 4a17_U RPL35, 60S ribosomal pr 9.6 2.6E+02 0.0089 22.3 3.6 41 351-395 48-88 (124)
5 2ltm_A NFU1 iron-sulfur cluste 11.8 73 0.0025 24.9 0.0 47 214-260 54-100 (107)
6 3u5e_h 60S ribosomal protein L 7.9 2.8E+02 0.0095 22.0 3.1 41 351-395 44-84 (120)
7 3ivz_A Nitrilase; alpha-beta s 7.9 3.4E+02 0.012 23.8 4.2 28 245-274 19-46 (262)
8 3hkx_A Amidase; alpha-beta-BET 7.5 3.5E+02 0.012 24.1 4.1 27 246-274 39-65 (283)
9 3nku_A DRRA, SIDM; posttransla 6.8 1.3E+02 0.0046 24.4 0.7 51 20-75 12-65 (213)
10 3p8k_A Hydrolase, carbon-nitro 6.5 3.5E+02 0.012 24.1 3.6 27 246-274 39-65 (281)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.79 E-value=1.5e-20 Score=181.32 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhhhceEEEEEeeeecchhhhhhhhhhcCCccchhhcccCCCCCCCeEEEeCCCchhHHHHHhhcc---
Q 016065 129 VVTGRFLSRVMLFVLGFYWITETFRILDVQEKSENEAKNQSKDEDEAKDQDEESGRPGAIISNHVSYLDILYHMSSS--- 205 (396)
Q Consensus 129 ~~~~~~~~r~~l~~~G~~~i~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~iiVsNH~S~lD~l~l~~~~--- 205 (396)
..+++.|.|.++...|. +|.|.... .++ .++.+.++++|++|||+|.+|++++....
T Consensus 95 y~~~~~~ir~li~~~~s---~V~G~e~~--------~~~---------~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~ 154 (367)
T 1iuq_A 95 YIFGQNYIRPLIDFGNS---FVGNLSLF--------KDI---------EEKLQQGHNVVLISNHQTEADPAIISLLLEKT 154 (367)
T ss_dssp HHHHHHHHGGGBCGGGC---EEECHHHH--------HHH---------HHHHHTTCEEEEEECCCCTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhcCC---Eeecchhh--------hhH---------HhhccCCCcEEEEECCccchhHHHHHHHHhhc
Confidence 34556677777776665 35553322 111 22345778999999999999999987776
Q ss_pred ------CceEEeccccccccHH---HHHHHhcCceEEecCCC------CcccccchHHHHHHHHHHHhCCCCCeEEEeeC
Q 016065 206 ------FPSFVAKRSVAKLPLV---GLISKCLGCVYVQRESK------SSDFKGVSGVVTERVREAHRDKSAPMMMLFPE 270 (396)
Q Consensus 206 ------~~~fvak~~l~~~P~~---g~~~~~~g~i~v~R~~~------~~~~k~~~~~i~~~l~~~~~~~~g~~l~IFPE 270 (396)
+..||||+++.+.|+. +.+ +.++||+..|.-. ....+...+++.+. .+.++.+ |..++||||
T Consensus 155 ~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~-~~~Lk~G-G~sI~IFPE 231 (367)
T 1iuq_A 155 NPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKRKANTRSLKEM-ALLLRGG-SQLIWIAPS 231 (367)
T ss_dssp CHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHH-HHHHHHC-CCEEEECTT
T ss_pred ccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhhhHHHHHHHHHH-HHHHHcC-CeEEEEeCC
Confidence 3599999999977766 444 4567888743221 00111112222222 2222222 458999999
Q ss_pred ceecCC----Cc--ccccccccc----c----CCCc--EEEEEEECCCCCCCCccccccchhHHHHHhhccCcEEEEEEc
Q 016065 271 GTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRFSPAWDSISGARHVFFLLCQFVNHIEVTSL 334 (396)
Q Consensus 271 GT~sn~----~~--ll~fk~Gaf----~----~~~p--V~Pv~i~y~~~~~~~~w~~~~~~~~~~~~l~~~~~~v~V~~l 334 (396)
|||+++ +. ..+||+|+| . +++| |+|++|. ++..++|.-..-. .+-......++.|.|.++
T Consensus 232 GTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~imppp~~ve~---~~g~~r~i~~~~V~v~ig 307 (367)
T 1iuq_A 232 GGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPPPSQVEI---EIGEKRVIAFNGAGLSVA 307 (367)
T ss_dssp CSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGSCCC-------------CCCCCBCCEEEEC
T ss_pred CCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-eccccCCcccccc---cccccceeecccEEEEEC
Confidence 999995 34 456999998 3 8999 9999999 6665554210000 000000112468999999
Q ss_pred cccCCCCCC------CCCHHHHHHHHHHHHHHhc
Q 016065 335 PVYHPSQQE------KDDPKLYAENVRRLMASER 362 (396)
Q Consensus 335 ppi~p~~~~------~~~~~~~a~~vr~~ma~~l 362 (396)
|||++++.. ++..+.+++.|++.|++.+
T Consensus 308 ~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y 341 (367)
T 1iuq_A 308 PEISFEEIAATHKNPEEVREAYSKALFDSVAMQY 341 (367)
T ss_dssp CCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999876422 2234468889999998764
No 2
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=11.61 E-value=2.4e+02 Score=20.99 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCccccccchHHHHHHHHHhcCC
Q 016065 342 QEKDDPKLYAENVRRLMASERNLILSDIGLAEKRIYHAALNGN 384 (396)
Q Consensus 342 ~~~~~~~~~a~~vr~~ma~~l~~~~~~~~~~dk~~y~~~~~~~ 384 (396)
.+..|...+.-++-.++..+..+.+-++..+|-+.++++|+..
T Consensus 34 ldk~ds~~l~vnLLnQL~~a~~VnLF~~sl~eL~~v~~YW~~M 76 (90)
T 1gvn_A 34 LNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSM 76 (90)
T ss_dssp CCTTCTTSHHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHH
Confidence 3445566677788888888999999999999999999999864
No 3
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=10.85 E-value=1.7e+02 Score=21.52 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEeeCceecCC
Q 016065 246 SGVVTERVREAHRDKSAPMMMLFPEGTTTNG 276 (396)
Q Consensus 246 ~~~i~~~l~~~~~~~~g~~l~IFPEGT~sn~ 276 (396)
++.+++.++....+ |.|+++|-.|...|+
T Consensus 37 sqdirdiiksmkdn--gkplvvfvngasqnd 65 (112)
T 2lnd_A 37 SQDIRDIIKSMKDN--GKPLVVFVNGASQND 65 (112)
T ss_dssp HHHHHHHHHHHTTC--CSCEEEEECSCCHHH
T ss_pred hhhHHHHHHHHHhc--CCeEEEEecCccccc
Confidence 34566666665544 568999998887664
No 4
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=9.59 E-value=2.6e+02 Score=22.30 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHhcCCCCCCccccccC
Q 016065 351 AENVRRLMASERNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKD 395 (396)
Q Consensus 351 a~~vr~~ma~~l~~~~~~~~~~dk~~y~~~~~~~~~~~~~~~~~~ 395 (396)
...||..||.. .+-+...++..-...|.|+.-+|.||..|.
T Consensus 48 Ir~vRRdIARi----~Tvl~er~~~~lr~~yk~kk~~P~dlr~kk 88 (124)
T 4a17_U 48 IGIVRKAIAKY----LTIINEKRRQAVKDQFKGKSLKPLDIRVKK 88 (124)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSSCCTTTSCCS
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCcccCchH
Confidence 45666777765 233445677788888999999999998763
No 5
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=11.84 E-value=73 Score=24.86 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=32.2
Q ss_pred ccccccHHHHHHHhcCceEEecCCCCcccccchHHHHHHHHHHHhCC
Q 016065 214 SVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDK 260 (396)
Q Consensus 214 ~l~~~P~~g~~~~~~g~i~v~R~~~~~~~k~~~~~i~~~l~~~~~~~ 260 (396)
.++.+|.+..++-..++|-|+|.....+.+.+...+.+.|.+...+|
T Consensus 54 ~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~~~I~~~~~sG 100 (107)
T 2ltm_A 54 QLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASG 100 (107)
Confidence 45677888888888889999983323345666666777777766554
No 6
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=7.95 E-value=2.8e+02 Score=22.00 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHhcCCCCCCccccccC
Q 016065 351 AENVRRLMASERNLILSDIGLAEKRIYHAALNGNNSLPSVLHQKD 395 (396)
Q Consensus 351 a~~vr~~ma~~l~~~~~~~~~~dk~~y~~~~~~~~~~~~~~~~~~ 395 (396)
...||..||.. .+-+...+..+-...|.|+.-+|.||..|.
T Consensus 44 Ir~vRR~IARi----~Tvl~er~~~~lr~~yk~kk~~p~dlr~kk 84 (120)
T 3u5e_h 44 IKTVRKSIACV----LTVINEQQREAVRQLYKGKKYQPKDLRAKK 84 (120)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHTTSSSSCCCTTTSCCS
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCCCCcccCchH
Confidence 34566666664 223344567788888999999999998763
No 7
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=7.92 E-value=3.4e+02 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHhCCCCCeEEEeeCceec
Q 016065 245 VSGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (396)
Q Consensus 245 ~~~~i~~~l~~~~~~~~g~~l~IFPEGT~s 274 (396)
..+.+.+.++++.+.+ .-|++|||-..+
T Consensus 19 N~~~~~~~i~~A~~~g--adlvvfPE~~~~ 46 (262)
T 3ivz_A 19 NYSKAEKLIKEASKQG--AQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEECCTTTTT
T ss_pred HHHHHHHHHHHHHHCC--CCEEEeCCCccc
Confidence 3445556666655543 469999996654
No 8
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=7.46 E-value=3.5e+02 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEeeCceec
Q 016065 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (396)
Q Consensus 246 ~~~i~~~l~~~~~~~~g~~l~IFPEGT~s 274 (396)
.+.+.+.++++.+.+ .-|++|||-..+
T Consensus 39 ~~~~~~~i~~A~~~g--adlvvfPE~~l~ 65 (283)
T 3hkx_A 39 LDLIDDAAARASEQG--AQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECCTTGGG
T ss_pred HHHHHHHHHHHHHCC--CCEEEcCCCccc
Confidence 445556666665543 469999997765
No 9
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=6.81 E-value=1.3e+02 Score=24.40 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCCCccccccHHHHhhccCCce---ecCCCCCCCCCCCCHHHHHHHHHH
Q 016065 20 DDGGSAKDDRPLLKPDAADNIQELEKKFAPYV---RNDVYGTMGRGELPLAEKFLIGIA 75 (396)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---r~d~~~~~~~~~~~~~~~~~~~~~ 75 (396)
+.--+++.++|||++.....-||.+.|.+-.. |.+ -| ...|.||-+.-.+.
T Consensus 12 gslysderdkpllsptaqkkfeeyqnklanlskiiren-eg----nevspwqewenglr 65 (213)
T 3nku_A 12 GSLYSDERDKPLLSPTAQKKFEEYQNKLANLSKIIREN-EG----NEVSPWQEWENGLR 65 (213)
T ss_dssp CCTTSCTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHT-GG----GCSCHHHHHHHHHH
T ss_pred cccccccccCccCChhHHHHHHHHHHHHHhHHHHHHhc-cC----CcCCcHHHHHHHHH
Confidence 33445678999999976655666655554322 222 11 14466666655543
No 10
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=6.53 E-value=3.5e+02 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.136 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEeeCceec
Q 016065 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (396)
Q Consensus 246 ~~~i~~~l~~~~~~~~g~~l~IFPEGT~s 274 (396)
.+.+.+.++++.+. +.-|++|||-..+
T Consensus 39 l~~~~~~i~~A~~~--gadlvvfPE~~l~ 65 (281)
T 3p8k_A 39 ETQITQWFEKNMNA--EVDVVVLPEMWNN 65 (281)
T ss_dssp HHHHHHHHHHHCCT--TCCEEECCSSTTT
T ss_pred HHHHHHHHHHHHhC--CCcEEEcCCCccC
Confidence 34455556555433 4569999997655
Done!