RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016065
(396 letters)
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 241 bits (617), Expect = 8e-79
Identities = 89/242 (36%), Positives = 124/242 (51%), Gaps = 35/242 (14%)
Query: 137 RVMLFVLGFYWITETFRILDVQEKSENEAKNQSKDEDEAKDQDEESGRPGAIISNHVSYL 196
RV+LF GFY I + + P I++NH S++
Sbjct: 2 RVLLFAFGFYVIKV-------------------------HGKPDPPEAPRIIVANHTSFI 36
Query: 197 DILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREA 256
D L S FPS VAK+ + KLP +G I + LGC++V R V E ++E
Sbjct: 37 DPLILFSDLFPSIVAKKELGKLPFIGTILRALGCIFVDRSEPKD-----RKKVVEEIKER 91
Query: 257 HRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVILRYPYQRFSPAWDSISGA- 315
D + P +++FPEGTTTNG L+ FK GAF PV PV +RYP +F A+ + SG
Sbjct: 92 ATDPNWPPILIFPEGTTTNGKALIMFKKGAFEPGVPVQPVAIRYPN-KFVDAFWNSSGYS 150
Query: 316 --RHVFFLLCQFVNHIEVTSLPVYHPSQQEKDDPKLYAENVRRLMASERNLILSDIGLAE 373
++F LL Q N +EV LPVY PS +E +DPK +A VR +MA++ L +D +
Sbjct: 151 SLMYLFRLLTQPANVLEVEFLPVYTPS-EEGEDPKEFANRVRLIMANKLGLPATDWTGED 209
Query: 374 KR 375
KR
Sbjct: 210 KR 211
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 99.7 bits (249), Expect = 9e-25
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 183 GRPGAIISNHVSYLDILYHMSSSFP--SFVAKRSVAKLPLVGLISKCLGCVYVQRESKSS 240
P I++NH SYLD L ++ FVAK+ + K+P +G + + LG + + R + S
Sbjct: 23 KGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNGRS 82
Query: 241 DFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFL----ARAPVLPV 296
+ + + E ++E +++FPEGT + LLPFK+GAF A P++PV
Sbjct: 83 AREALREAI-EALKEGES------VVIFPEGTRSRDGELLPFKSGAFRLAKEAGVPIVPV 135
Query: 297 ILRYPYQRFSPAW 309
+ +
Sbjct: 136 AISGTWGSLPKGK 148
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 94.7 bits (236), Expect = 9e-24
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 188 IISNHVSYLDILYHMSSSF-----PSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
+++NH S+LD L + FVAK+ + +PL+G + + LG +++ R +
Sbjct: 3 VVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRKA- 61
Query: 243 KGVSGVVTERVREAHRDKSAPM-MMLFPEGTTTNGDYLLPFKTGAFL----ARAPVLPVI 297
+REA +++FPEGT + LLPFK GA A P++PV
Sbjct: 62 -------RAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVA 114
Query: 298 LRY 300
+R
Sbjct: 115 IRG 117
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 86.2 bits (214), Expect = 1e-20
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 18/127 (14%)
Query: 183 GRPGAIISNHVSYLDILYHMSSSFP------SFVAKRSVAKLPLVGLISKCLGCVYVQRE 236
G P +++NH SYLD L +S P FVAK + LPL+G + + LGC+++ R+
Sbjct: 13 GGPAIVVANHQSYLDPLL-LSLLLPKRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRK 71
Query: 237 SKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAF----LARAP 292
+ + +V E +RE ++++FPEGT + G LLPFK GAF A P
Sbjct: 72 NAKDAANTLEYLV-ELLREGE------LVLIFPEGTRSRGGELLPFKKGAFRLAREAGVP 124
Query: 293 VLPVILR 299
++PV +
Sbjct: 125 IVPVAIS 131
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 82.8 bits (205), Expect = 3e-19
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 176 KDQDEESGRPGAIISNHVSYLDILYHMSSSFP---SFVAKRSVAKLPLVGLISKCLGCVY 232
++ + P +++NH S LD L +S++FP F+AK+ + +P G++ G ++
Sbjct: 8 GPENLPAKSPVLVVANHQSNLDPLT-LSAAFPPPIVFIAKKELKWIPFFGIMLWLTGAIF 66
Query: 233 VQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFL---- 288
+ RE+ + + E + + + FPEGT + G +LPFK GAF
Sbjct: 67 IDRENIRAI-----ATALKAAIEVLKQGRSIGV--FPEGTRSRGRDILPFKKGAFHIAIK 119
Query: 289 ARAPVLPVILR 299
A P+LPV+L
Sbjct: 120 AGVPILPVVLS 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 82.7 bits (204), Expect = 4e-18
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 19/125 (15%)
Query: 188 IISNHVSYLDILYHMSSSFP-----SFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
+++NH S+LD L +S + P FVAK+ + K+PL+G + + LG + V RE+
Sbjct: 68 VVANHQSFLDPLL-LSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRENPD--- 123
Query: 243 KGVSGVVTERVREAHRDKSAPMMMLFPEGTTTN-GDYLLPFKTGAFL----ARAPVLPVI 297
R++ R +++FPEGT + G+ LLPFK GA A P++PV
Sbjct: 124 DETLRAAVARLKAGGR-----SLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVA 178
Query: 298 LRYPY 302
+
Sbjct: 179 IVGAE 183
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 60.6 bits (147), Expect = 4e-10
Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 25/194 (12%)
Query: 182 SGRPGAI-ISNHVSYLD--ILYHMSSSFPSFVAKRSVAKLPLVGLISK----CLGCVYVQ 234
S RP + ++NH S +D +L M+ F + K VG + +GC++
Sbjct: 160 SRRPKQVFVANHTSMIDFIVLEQMTP-FAVIMQKHP----GWVGFLQNTILESVGCIWFN 214
Query: 235 R-ESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPV 293
R E+K + VV +++R+ +D +++FPEGT N +Y + FK GAF V
Sbjct: 215 RTEAKDRE------VVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFELGCTV 268
Query: 294 LPVILRYPYQRFSPAWDS--ISGARHVFFLLCQFVNHIEVTSLPVYHP-SQQEKDDPKLY 350
P+ ++Y W+S S H+ L+ + +V L P + + + P +
Sbjct: 269 CPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYL---EPQTLRPGETPIEF 325
Query: 351 AENVRRLMASERNL 364
AE VR ++A L
Sbjct: 326 AERVRDMIAKRAGL 339
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 56.3 bits (136), Expect = 3e-09
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 185 PGAIISNHVSYLDI--LYHMSSSFPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDF 242
P +SNH S+LDI L+H+ F F++K S+ +P++G G + ++R + S
Sbjct: 51 PAVYVSNHQSFLDIYTLFHLGRPF-KFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQL 109
Query: 243 KGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFL----ARAPVLPVIL 298
+ + +R E + ++ + FPEGT + L FK GAF PV+P+ L
Sbjct: 110 ECL-----KRCMELLKKGAS--VFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVPVVPITL 162
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 54.0 bits (130), Expect = 1e-08
Identities = 39/194 (20%), Positives = 60/194 (30%), Gaps = 36/194 (18%)
Query: 177 DQDEESGRPGAIISNHVSYLD------ILYHMSSSFPSFVAKRSVAKLPLVGLISKCLGC 230
G P +SNH S+ D +L + L ++ G
Sbjct: 19 PPPPPGGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE--ELLERYPFFTRL-GA 75
Query: 231 VYVQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDY-LLPFKTGAF-- 287
V R+S S K + V K ++ +FPEGT T D L FK G
Sbjct: 76 FSVDRDSPRSAAKSLKYVA------RLLSKPGSVVWIFPEGTRTRRDKRPLQFKPGVAHL 129
Query: 288 --LARAPVLPVILRYPYQRFSPAWDSISGARHVFFLLCQFVNHIEVTSLPVYHPSQQEKD 345
A P++PV LRY + + + Y + ++
Sbjct: 130 AEKAGVPIVPVALRYTF----------------ELFEQFPEIFVRIGPPIPYAETALGEE 173
Query: 346 DPKLYAENVRRLMA 359
A + RL+
Sbjct: 174 LAAELANRLTRLLD 187
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 53.9 bits (129), Expect = 3e-08
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 176 KDQDEESGRPGAIISNHVSYLDILYHMSSSFPSFV--AKRSVAKLPLVGLISKCLGCVYV 233
K D ES I+NH + D++ + P V K+S+ +P G + G + +
Sbjct: 57 KPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIPFFGQLYWLTGNLLI 116
Query: 234 QRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAF----LA 289
R +++ ++ VV H K + +FPEGT + G LLPFKTGAF A
Sbjct: 117 DRNNRTKAHGTIAEVVN------HFKKRRISIWMFPEGTRSRGRGLLPFKTGAFHAAIAA 170
Query: 290 RAPVLPV 296
P++PV
Sbjct: 171 GVPIIPV 177
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 48.0 bits (115), Expect = 2e-06
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 207 PSFVAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVT---ERVREAHRDKSAP 263
F+AK + K PL+G + + G + V R + + V EA + A
Sbjct: 54 VRFLAKADLFKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGA- 112
Query: 264 MMMLFPEGTTTNGDYLLPFKTGA 286
+ +FPEG + + LLP K GA
Sbjct: 113 -IGIFPEGGSHDRPRLLPLKAGA 134
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 46.8 bits (112), Expect = 3e-06
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 188 IISNHVSYLDILYHMSSSFPS-------FVAKRSVAKLPLVGLISKCLGCVYVQRESKSS 240
IISNH S +D L + V K S+ PL G + ++++R
Sbjct: 28 IISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIFLKR-KWEK 86
Query: 241 DFKGVSGVVTERVREAHRDKSAPM-MMLFPEGT 272
D +R + +D P +++FPEGT
Sbjct: 87 D-----EKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 43.0 bits (102), Expect = 3e-04
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 189 ISNHVSYLD-ILYHMSSSFP-SFVAKRSVAKLPLVGLISKCLGCVYV-QRESKSSDFKGV 245
+ NHVS++D L +S P FV +RS+ + + K G + + SK S
Sbjct: 446 LGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVIPISSGGSKES----- 500
Query: 246 SGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLA----RAPVLPVILRYP 301
E +R+A D ++ +FPEG T L FK G L P++P +R
Sbjct: 501 ----LEFIRKALDDGE--VVCIFPEGAITRNGQLNEFKRGFELIVKGTDVPIIPFYIR-- 552
Query: 302 YQRFSPAWDSI 312
W SI
Sbjct: 553 -----GLWGSI 558
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 34.8 bits (81), Expect = 0.065
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 188 IISNHVSYLDILYHMSSS-----FPSFVAKRSVAKLPLVGLISKCLGCVYVQRESKS 239
+ISNH S++DIL F K+ + +P +GL L +++R SK+
Sbjct: 91 VISNHQSWVDILVLQYVFNRRIPMLKFFLKQELIWVPFLGLAWWALDFPFMKRYSKA 147
>gnl|CDD|184996 PRK15036, PRK15036, hydroxyisourate hydrolase; Provisional.
Length = 137
Score = 31.1 bits (70), Expect = 0.43
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 256 AHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFL 288
A DK + L+PE T T GDY + FKTG +
Sbjct: 63 AKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 31.4 bits (72), Expect = 0.89
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 140 LFVLGFYWITETFRILDVQEKSEN 163
L +LGFYWIT +F D+ E N
Sbjct: 191 LGILGFYWITGSFEFRDLFEIFNN 214
>gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion
transport and metabolism].
Length = 461
Score = 31.1 bits (71), Expect = 1.1
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 76 MVTLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHMGGWRRSVVVVTGRFL 135
+ +LP+ ++L + +L++ Y + + PN + + +G R ++ G FL
Sbjct: 211 FLAMLPLGILLLLLLLLLLYKLFPPREIKETPNNPVAAKRELKELGPLLRDEKLLLGIFL 270
Query: 136 SRVMLFVLGFYWITETF 152
+L WI
Sbjct: 271 ------LLLLLWIFGKL 281
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 30.7 bits (69), Expect = 1.5
Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 34/124 (27%)
Query: 68 EKFLIGIAMVTLLPIRVVLAMTVLVIYYLICR-------VCTLFSAPNRGEDEQEDYAHM 120
E + GI + ++P+ +++ + L+IY+ + + + TLF++ D+ HM
Sbjct: 35 ESAINGIMLTLIIPMIIIV-ICTLIIYHKVAKHNATSFYLITLFAS---------DFLHM 84
Query: 121 GGW-------RRSVVVVTGRFLSRVMLFV--------LGFYWITETFRILDVQEKSENEA 165
R + + + +LF+ + I T R + + +N+
Sbjct: 85 --LCVFFLTLNREALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK 142
Query: 166 KNQS 169
KN
Sbjct: 143 KNNH 146
>gnl|CDD|220565 pfam10095, DUF2333, Uncharacterized protein conserved in bacteria
(DUF2333). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 337
Score = 30.0 bits (68), Expect = 2.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 112 DEQEDYAHMGGWRRSVVVVTGRFLSRVMLFVLGFYWITE--TFRILDVQEKSENEAKNQS 169
+ G ++V+ +L ++L++LG YW E F DVQ K++ AK
Sbjct: 2 ADGPRTMGEKGILKTVLGALAVYL--LILYLLGIYWSFEPAAF---DVQTKAQEAAKQNQ 56
Query: 170 KD 171
+
Sbjct: 57 QK 58
>gnl|CDD|236260 PRK08411, PRK08411, flagellin; Reviewed.
Length = 572
Score = 30.0 bits (67), Expect = 2.6
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ + K+T ++ DG S K R +L+ D ++EL+
Sbjct: 82 MDEQLKILDTIKTKATQAAQDGQSLK-TRTMLQADINRLMEELD 124
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme,
C-terminal TPP binding domain.
Length = 151
Score = 28.3 bits (64), Expect = 3.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 50 YVRNDVYGTMGRGELPLAEKFLIGIAMVTLLPIRVVLAMT 89
Y+ + GTMG G LP A IG + P R V+A+
Sbjct: 21 YLTSGGLGTMGYG-LPAA----IGAKL--ARPDRPVVAIA 53
>gnl|CDD|215050 PLN00077, PLN00077, photosystem II reaction centre W protein;
Provisional.
Length = 128
Score = 28.1 bits (62), Expect = 4.8
Identities = 16/67 (23%), Positives = 27/67 (40%)
Query: 210 VAKRSVAKLPLVGLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFP 269
A R V LP + S+ + C Y ++ + +D ++G A + P L
Sbjct: 17 AAARPVLGLPQLRARSERVRCSYEKKAANKADVNKLAGASLLVTSAATMAYAHPAFALVD 76
Query: 270 EGTTTNG 276
E +T G
Sbjct: 77 ERMSTEG 83
>gnl|CDD|237146 PRK12584, PRK12584, flagellin A; Reviewed.
Length = 510
Score = 29.1 bits (65), Expect = 5.0
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ ++K+T ++ DG + + R ++ D IQ L+
Sbjct: 82 MDEQLKILDTIKVKATQAAQDGQTT-ESRKAIQSDIVRLIQGLD 124
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter.
This family represents a high-affinity plasma-membrane
choline transporter in C.elegans which is thought to be
rate-limiting for ACh synthesis in cholinergic nerve
terminals.
Length = 327
Score = 28.3 bits (64), Expect = 6.3
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 76 MVTLLPIRVVLAMTVLVIYYLICRVCTLFSAPNRGEDEQEDYAHMGGWRRSVVVVTGRFL 135
+ L+P+ LA+ + +++ V G+ + + G L
Sbjct: 43 SLLLVPLITFLALAAFIALWIVVAVALY----TSGDPKYNNGGCPTG----GEYKYDSKL 94
Query: 136 SRVMLF-VLGFYWITE 150
++++ + G +W +E
Sbjct: 95 IGLLVYLLFGLFWTSE 110
>gnl|CDD|172158 PRK13589, PRK13589, flagellin; Provisional.
Length = 576
Score = 28.5 bits (63), Expect = 7.9
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQELE 44
M+ +LK L++ + K+T ++ DG S K R +L+ D ++EL+
Sbjct: 82 MDEQLKILDTIKTKATQAAQDGQSLK-TRTMLQADINRLMEELD 124
>gnl|CDD|224183 COG1263, PtsG, Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific
[Carbohydrate transport and metabolism].
Length = 393
Score = 28.0 bits (63), Expect = 8.9
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 71 LIGIAMVTLLPIR-------VVLAMTVLVIYYLICRVCTLF---SAPNRGEDEQEDYA 118
LI ++ LP+ V+ + + +YY + P R ++E++ A
Sbjct: 334 LIDFVLIFPLPLLGGNNLLVYVIGLVIAAVYYFVFTFLIGKFNLKTPGREDEEEKSAA 391
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,334,274
Number of extensions: 1981281
Number of successful extensions: 1875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1848
Number of HSP's successfully gapped: 27
Length of query: 396
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 297
Effective length of database: 6,546,556
Effective search space: 1944327132
Effective search space used: 1944327132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)