RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 016065
         (396 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 26/142 (18%)

Query: 181 ESGRPGAIISNHVSYLD------ILYHMSSSFP---SFVAKRSVAKLPLVGLISKCLGCV 231
           + G    +ISNH +  D      +L   +        FVA   V   PL    S     +
Sbjct: 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLI 186

Query: 232 YVQRESKSSDFKGVSGVVT----ERVREAHRDKSAP--MMMLFPEGTTTNGD------YL 279
            V  +    D   ++          ++E          ++ + P G     D      Y 
Sbjct: 187 CVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYP 246

Query: 280 LPFKTG-----AFLARAPVLPV 296
            PF          L +   +P 
Sbjct: 247 APFDASSVDNMRRLIQHSDVPG 268


>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 26.9 bits (60), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 2  ESELKDLNSKQLKSTASSDDGGSAKDDRPLLKPDAADNIQE-LEKK 46
          ++EL  L + +LK       GG+ KD    ++ D  D ++  LE K
Sbjct: 30 DAELTKL-AAELKKKCGC--GGAVKDGVIEIQGDKRDLLKSLLEAK 72


>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
           yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
           4932]}
          Length = 153

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 302 YQRFSPAWDSISGARHVFFLLCQFVNHIEVTSLPVYHPSQQEKDDPKLYAENVRRLMA 359
             R++P +D       +   +    N     S      +   KD    Y + V+  + 
Sbjct: 92  QNRWTPTYD----VASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVE 145


>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead
           seabream (Sparus aurata) [TaxId: 8175]}
          Length = 116

 Score = 25.5 bits (56), Expect = 6.2
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 251 ERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLAR---APVLPVI 297
            ++     D +  +  L  E     G Y + F T A+       P   V 
Sbjct: 34  TQIATGVTDATGEIHNLITEQQFPAGVYRVEFDTKAYWTNQGSTPFHEVA 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,426,136
Number of extensions: 64956
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 7
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)