Query 016066
Match_columns 396
No_of_seqs 416 out of 1228
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 07:18:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.4E-39 1.2E-43 301.6 25.2 365 7-392 30-411 (451)
2 3o7q_A L-fucose-proton symport 100.0 7.4E-38 2.5E-42 291.4 29.3 347 7-392 28-409 (438)
3 4gc0_A D-xylose-proton symport 100.0 1.6E-35 5.6E-40 279.7 29.6 367 12-389 19-431 (491)
4 2gfp_A EMRD, multidrug resista 100.0 6.8E-37 2.3E-41 279.1 14.0 341 8-391 3-353 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 2.5E-33 8.6E-38 264.7 28.9 375 5-390 13-448 (491)
6 2cfq_A Lactose permease; trans 100.0 5.4E-32 1.9E-36 250.0 10.8 358 3-391 5-376 (417)
7 2xut_A Proton/peptide symporte 100.0 8.1E-29 2.8E-33 235.7 18.7 380 4-390 11-467 (524)
8 2cfq_A Lactose permease; trans 99.5 1.2E-13 4.2E-18 127.0 11.3 158 27-192 242-404 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.5 2.3E-13 7.8E-18 126.5 12.3 173 5-186 252-432 (451)
10 4aps_A DI-OR tripeptide H+ sym 99.4 1.9E-12 6.4E-17 121.7 16.1 153 238-391 12-173 (491)
11 3o7q_A L-fucose-proton symport 99.4 1.9E-12 6.5E-17 119.8 15.6 143 244-388 31-177 (438)
12 2xut_A Proton/peptide symporte 99.4 4.6E-12 1.6E-16 120.1 15.9 152 238-390 11-174 (524)
13 4gc0_A D-xylose-proton symport 99.3 1.9E-11 6.5E-16 114.8 14.4 145 49-195 313-470 (491)
14 2gfp_A EMRD, multidrug resista 99.3 1.9E-11 6.4E-16 110.7 13.1 145 244-390 5-150 (375)
15 2g9p_A Antimicrobial peptide l 49.7 1.8 6.1E-05 20.2 -1.0 13 68-80 3-15 (26)
16 3d9s_A Aquaporin-5, AQP-5; aqu 23.3 77 0.0026 26.3 4.0 22 167-188 204-225 (266)
17 2b6o_A Aquaporin-0, lens fiber 20.5 72 0.0025 26.4 3.2 24 165-188 199-222 (263)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.4e-39 Score=301.57 Aligned_cols=365 Identities=12% Similarity=0.062 Sum_probs=292.1
Q ss_pred chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016066 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (396)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~ 86 (396)
+..+++..++..++.....+.+|.+ .+++ .+..+.|++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYL--------VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHT--------TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 4455677778888888888998888 4445 666788999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHh----ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016066 87 LSIIPLAILAY----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR 162 (396)
Q Consensus 87 ~~~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 162 (396)
+.+++.+++++ +++ ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+...++|.+++|.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 888 8999999999999 889999999999999999999999999999999999999999987
Q ss_pred Hh----h-hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHH-hhhhc
Q 016066 163 FI----S-TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLK 236 (396)
Q Consensus 163 ~~----~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 236 (396)
.+ + ||+.|++.+++.++..++.++.+||+|++.+.++.-++.++ .+++. + ++++++.+.++. .+...
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~--~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----YPDDY-N--EKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------------CCTHHHHHHTS
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----ccccc-h--hhhhcccccccchHHHHH
Confidence 64 6 99999999998888877777888988765432110000000 00000 0 011111222332 23344
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHHHHHHH
Q 016066 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLSFGLL 314 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~ 314 (396)
++|.++...+..++..........++|.|+++.+|+++.+.+...+...++.+++. ++.+++.||+ ++|+.+..+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHH
Confidence 68888888888888888888899999999999889999999999999999999999 7778999999 99988877776
Q ss_pred HHH-HHHHHHHHhh--hhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhhhhh
Q 016066 315 FGC-VHMFLYSVAW--SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTG 389 (396)
Q Consensus 315 ~~~-i~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~ 389 (396)
+.. ++++++.... +.+... ...+.+++.+...+...++..|.+|+++||+++|+.+...++ |..++|.+.|.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 6666555543 233222 244557777777888899999999999999999999999999 99999999999998
Q ss_pred ccc
Q 016066 390 DCR 392 (396)
Q Consensus 390 ~~~ 392 (396)
...
T Consensus 409 ~~g 411 (451)
T 1pw4_A 409 FFG 411 (451)
T ss_dssp SSC
T ss_pred hcC
Confidence 753
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.4e-38 Score=291.40 Aligned_cols=347 Identities=12% Similarity=0.092 Sum_probs=287.5
Q ss_pred chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016066 7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT 86 (396)
Q Consensus 7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~ 86 (396)
+..++...++..+..+...+.+|.+. ++++.+..+.|++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQ--------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 33456667777777788888888873 3456777899999999999999999999999999999999999999
Q ss_pred HhHHHHHHH---HhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016066 87 LSIIPLAIL---AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF 163 (396)
Q Consensus 87 ~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 163 (396)
+.+++.+++ +++++ ++.++++|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 88899 9999999999999 8999999999999999999999999999999999999999999877
Q ss_pred hh------------------------------hHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccccccccchhhhhhhh
Q 016066 164 IS------------------------------TSAAFQAATAGSIISAVYMRI-FLPESVRDEDLYTPILSSKAEISASC 212 (396)
Q Consensus 164 ~~------------------------------~~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~l~~~~~~~~~~~ 212 (396)
+. ||+.|++.+++..+..++.++ ..||++++++++
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------- 241 (438)
T 3o7q_A 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------- 241 (438)
T ss_dssp HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--------------
T ss_pred HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--------------
Confidence 63 999998887777665554422 234433321100
Q ss_pred hhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHH-hhhhccccccchhhHHHHHHHHHHHH
Q 016066 213 EESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY-LKAKFHFNKNQFADLMVIAGIAGTIS 291 (396)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (396)
+++.+.++..+.+.++|.++...+..++..........++|.| +++.+|+++.+.+...+...++.+++
T Consensus 242 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 242 ----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp ----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 0011122222223467888888888888888888888999999 88888999999999999999999999
Q ss_pred HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHH
Q 016066 292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISG 371 (396)
Q Consensus 292 ~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 371 (396)
. ++.+++.||++||+.+..+..+..++.+++...++.+......+.+++.+...|...++..|.+|++ ++++.++..
T Consensus 312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 312 R-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 9 7778999999999999999999888888888777666555566678888888999999999999966 888988877
Q ss_pred HHHHHHHhhhhhhhhhhhccc
Q 016066 372 ICSFANLVSPLAFSPLTGDCR 392 (396)
Q Consensus 372 ~~~~g~~~~~~~~g~l~~~~~ 392 (396)
.+.+|+.++|.+.|.+.|..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999865
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.6e-35 Score=279.70 Aligned_cols=367 Identities=15% Similarity=0.114 Sum_probs=257.3
Q ss_pred HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHH
Q 016066 12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP 91 (396)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~ 91 (396)
++.++.+++.+++.+.+|.+..+...+...+.+.+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566677778888888877665433334445677788999999999999999999999999999999999999999999
Q ss_pred HHHHHh------------------ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhh
Q 016066 92 LAILAY------------------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGA 153 (396)
Q Consensus 92 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 153 (396)
.+++++ +++ ++.++++|+++|+ +.|...+....+++|+.|+++|++..+..+.....|
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999984 667 9999999999999 999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----c---cccccccchhhhhhhhhh
Q 016066 154 FVCGTISARFI------------STSAAFQAATAGSIISAVYMRIFLPESVRDE----D---LYTPILSSKAEISASCEE 214 (396)
Q Consensus 154 ~~~g~~~~~~~------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~---~~~~l~~~~~~~~~~~~~ 214 (396)
.++++.++... .||..+.+..+..++..+ ..+++||+|+.- + +++.+++...++..+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 99998887653 356666666665555444 457899998631 1 122222222221111111
Q ss_pred hh--hhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHH-HHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHH
Q 016066 215 ST--KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLS-NLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIS 291 (396)
Q Consensus 215 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (396)
.+ +..+++++...... ..+.+..........+. .........+.+.+. +..+.+...........++...++
T Consensus 254 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLL----MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLTF 328 (491)
T ss_dssp HHHHHHHHHHHHHTTHHH----HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHH----HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHHH
Confidence 11 11111111111111 12333333333333333 333334444444444 444777766677777788888888
Q ss_pred HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh----hhHHHH-HHHHHHh-hhhhhhhhhHHHhhccCCccchhH
Q 016066 292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS----SWVPYA-AAVFSIL-SVFSHPCLRTIVSKQVASNEQGKA 365 (396)
Q Consensus 292 ~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~ 365 (396)
. ++.+++.||+|||+.+..+.....++++.+..... .+.... ..+...+ .....|..+.+.+|.+|++.|+++
T Consensus 329 ~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~ 407 (491)
T 4gc0_A 329 T-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 407 (491)
T ss_dssp H-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred H-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence 8 77789999999999999988888888777654322 111222 2222222 334457788999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhh
Q 016066 366 QGCISGICSFANLVSPLAFSPLTG 389 (396)
Q Consensus 366 ~g~~~~~~~~g~~~~~~~~g~l~~ 389 (396)
.|+.+..+++++.+++.+.+.+.+
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~ 431 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDK 431 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877654
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=6.8e-37 Score=279.09 Aligned_cols=341 Identities=11% Similarity=0.067 Sum_probs=278.2
Q ss_pred hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016066 8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL 87 (396)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~ 87 (396)
..++...++..++.+...|.+|.+ .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM--------ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 456778888889999999999988 445677888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---
Q 016066 88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--- 164 (396)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--- 164 (396)
.+++.++.+++++ ++.+++.|++.|+ +.+...+...+++.|++|+|+|+++++..+...++|..++|.+++.+
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999988 9999999999999 88999999999999999999999999999999999999999999876
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHH
Q 016066 165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243 (396)
Q Consensus 165 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (396)
+||+.|++.+++.++..+...+.+||++++++++ ++.++++++.+ ++|.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~----~~~~~~~ 203 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLF----GNSGFNC 203 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHh----cCcchHH
Confidence 8999999988888776665556777765543310 11122334433 4677888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH-HHHHHH-
Q 016066 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF-GCVHMF- 321 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~i~~~- 321 (396)
..+..++..........+.|.|+++.+|+++.+.+.......++.+++. .+.+++.||++++. ..+... ...+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~~--~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLM--WQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 8888888888888888899999998889999999999999999999999 77789999988732 222222 222222
Q ss_pred -HHHHh--hhhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016066 322 -LYSVA--WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC 391 (396)
Q Consensus 322 -~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 391 (396)
..... .+.+... ...+.+++.+...+...++..|..| ++||++.|+.+..+++|..++|.+.|.+.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22221 2333332 3555678888889999999999998 89999999999999999999999999987753
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.5e-33 Score=264.72 Aligned_cols=375 Identities=12% Similarity=0.031 Sum_probs=273.5
Q ss_pred ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhhhH
Q 016066 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTV 83 (396)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~~ 83 (396)
+.++.++...+...++.....+.++.+..+.. .++|++.+..+.|++.+++.++..+++++.|+++|| +|||+++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 45666777888888888888788888877631 134578888999999999999999999999999999 899999999
Q ss_pred HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCccc--chhHHHHHHHhhhhhhHHHHHHH
Q 016066 84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR--RASVFGIFSGIVSGAFVCGTISA 161 (396)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~ 161 (396)
+.++.+++.++++++++ ++.++++|+++|+ +.+...+...++++|++|+++ |+.+++.++...++|..++|.++
T Consensus 91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 8999999999999 889999999999999999988 77788889999999999999998
Q ss_pred HHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc--ccccccchhhhhhhh---------------------hh
Q 016066 162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDL--YTPILSSKAEISASC---------------------EE 214 (396)
Q Consensus 162 ~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~l~~~~~~~~~~~---------------------~~ 214 (396)
+.+ +||+.|++.++..++..+...+..|+..+++++ ++..++.+.+...+. +.
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 246 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL 246 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 875 899999998777766655544443433221110 000000000000000 00
Q ss_pred hhh----------------hhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchh
Q 016066 215 STK----------------KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFA 278 (396)
Q Consensus 215 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 278 (396)
++. ....+++..+..+ .++........+...+....+.....+++.|.++..+.+..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4aps_A 247 PAYINLLTIVAIAIPVFYFAWMISSVKVTSTE----HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS 322 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhcccccHHH----HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence 000 0000000000001 11222344445555556666677778889999988888877788
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH-----HHHHHHHHHHHHHHHhh---------hhhHHH-HHHHHHHhhh
Q 016066 279 DLMVIAGIAGTISQLIMMPVLAPTVGEARLLS-----FGLLFGCVHMFLYSVAW---------SSWVPY-AAAVFSILSV 343 (396)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~-~~~~~~~~~~ 343 (396)
.......+...++. .+.+++.||++||+... .+..+.+++++++.... +.+... ...+.+++.+
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM 401 (491)
T ss_dssp GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 88888899999998 66689999999886544 67777777766665532 222222 3555677788
Q ss_pred hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016066 344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD 390 (396)
Q Consensus 344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (396)
...+...+++.|.+|+++||++.|+.+....+|..++|.+.+.+.+.
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999988765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=5.4e-32 Score=250.00 Aligned_cols=358 Identities=14% Similarity=0.097 Sum_probs=239.0
Q ss_pred ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016066 3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT 82 (396)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~ 82 (396)
|+++++.+....++...+.+...|.+|.+..+ +++.+..+.|++.+.+.++..++++++|+++||+||||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~ 77 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL 77 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-------TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45566677777788888888889999998765 34555667899999999999999999999999999999999
Q ss_pred HHHHHhHHHHH---HHHhccCchhH-HHHHHHHHHHhhhccchhhHHHHHHHhcCCCc--ccchhHHHHHHHhhhhhhHH
Q 016066 83 VPITLSIIPLA---ILAYSRSRNFF-YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP--GRRASVFGIFSGIVSGAFVC 156 (396)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~ 156 (396)
.+..+.++... ...+++. . ..+...+.+.|+ +.+...+.....+.++.++ ++|+...+......++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 78 WIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 98877655321 1122211 1 113345666665 5554444434444444332 45677788888888999999
Q ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016066 157 GTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH 233 (396)
Q Consensus 157 g~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (396)
+|.+++.+ +||+.|++.++..++..+.. +..||+++++++++ ++ + ++++++.+.++..+
T Consensus 154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~---~--------~~~~~~~~~~~~~~ 215 (417)
T 2cfq_A 154 GASIVGIMFTINNQFVFWLGSGCALILAVLL-FFAKTDAPSSATVA------NA---V--------GANHSAFSLKLALE 215 (417)
T ss_dssp HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS-CSSCCCCSCSSCSS------SS---S--------SSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHcCcccccccccc------cc---c--------ccccccccHHHHHH
Confidence 99988875 68999987766644433332 33333221111000 00 0 00011122333333
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---ccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH
Q 016066 234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH---FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS 310 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 310 (396)
.+ ++|.++...+..+.....+.....++|.|+.+.++ .+....+.......+..+++. +..+++.||+|||+.+.
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~l~ 293 (417)
T 2cfq_A 216 LF-RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNALL 293 (417)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHH
T ss_pred Hh-cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHHHH
Confidence 33 46666665555444444455555668888876554 234455777777778888888 77789999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhH-HHHHHHHHHhhhhhhhhhh
Q 016066 311 FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPLT 388 (396)
Q Consensus 311 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~ 388 (396)
.+..+.+++.+.+...++.+.... ..+.+.+.+...+....+..|.+|++.||++++.. +..+.+|+.++|.+.|.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 888888777666655444333332 23334455555666788999999999999999994 8888999999999999998
Q ss_pred hcc
Q 016066 389 GDC 391 (396)
Q Consensus 389 ~~~ 391 (396)
|..
T Consensus 374 ~~~ 376 (417)
T 2cfq_A 374 ESI 376 (417)
T ss_dssp HHS
T ss_pred Hhc
Confidence 854
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=8.1e-29 Score=235.74 Aligned_cols=380 Identities=11% Similarity=0.032 Sum_probs=241.2
Q ss_pred cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhhh
Q 016066 4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLT 82 (396)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~ 82 (396)
++.++.+.+..++..++.....+.++.++.+..+++ .+.+.+..+.|++.+++.++..+++++.|+++||+ |||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 456777888888998888888889998877644311 12337777899999999999999999999999999 9999999
Q ss_pred HHHHHhHHHHHHHHhcc-CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH---HHHhhhhhhHHHH
Q 016066 83 VPITLSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI---FSGIVSGAFVCGT 158 (396)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~ 158 (396)
.+.++.+++.++.++++ + ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+. .+...++|..+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 8 8999999999999 8899999999999999999999876666 8888999999999
Q ss_pred HHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc-----------ccchhhhhhhh--hhh------
Q 016066 159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPI-----------LSSKAEISASC--EES------ 215 (396)
Q Consensus 159 ~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l-----------~~~~~~~~~~~--~~~------ 215 (396)
.+++.+ +||+.|++.+++.++..+...+..|+.++++++++.. ++.+.+.+... ...
T Consensus 166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (524)
T 2xut_A 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSA 245 (524)
T ss_dssp HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhh
Confidence 887754 7999999988877665554433223222111110000 00000000000 000
Q ss_pred -------hh------------hhhhhccCCChhHHh--------hhhcCChhHHHHHHH---HHHHHHhhhhhhhhHHHH
Q 016066 216 -------TK------------KLQVFKRLPSIDDMV--------HLLKSSPTFSQAAIV---AFLSNLADAGLQGSMMYY 265 (396)
Q Consensus 216 -------~~------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 265 (396)
.+ ...+++.+.++++.. +..++++........ ..+....+......++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (524)
T 2xut_A 246 AYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ 325 (524)
T ss_dssp HHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHH
T ss_pred hhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHh
Confidence 00 000000001110000 001112222211111 111222222223333443
Q ss_pred hhhhccccc-cchhhHHHHHHHHHHHHHHHHHHhhh----hhhcc----hhHHHHHHHHHHHHHHHHHHhh---------
Q 016066 266 LKAKFHFNK-NQFADLMVIAGIAGTISQLIMMPVLA----PTVGE----ARLLSFGLLFGCVHMFLYSVAW--------- 327 (396)
Q Consensus 266 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~g~----~~~~~~~~~~~~i~~~~~~~~~--------- 327 (396)
..+ .+.+. ...+.......+..++.. .+.+++. ||.++ ++.+..+..+.+++++++....
T Consensus 326 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 403 (524)
T 2xut_A 326 AND-MVKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSAL 403 (524)
T ss_dssp HHH-SCCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred HHh-cCCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 332 22221 134444444444444444 3333432 33332 3456677777777776665532
Q ss_pred hhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016066 328 SSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD 390 (396)
Q Consensus 328 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (396)
+.+.. ....+.+++.+...+...++..|..|+++||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22222 3355667888888999999999999999999999999999999999999999998873
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.48 E-value=1.2e-13 Score=127.03 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=123.5
Q ss_pred chhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHH
Q 016066 27 AITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYA 106 (396)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
.+|.+..+.. ++.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++.++.++.++ .+.
T Consensus 242 ~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~ 314 (417)
T 2cfq_A 242 QFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALE 314 (417)
T ss_dssp HHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HHH
T ss_pred HHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HHH
Confidence 3566655532 122344556788888888999999999999999999999999988888888877777777 777
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH-HHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHH
Q 016066 107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISA 181 (396)
Q Consensus 107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~ 181 (396)
+++..++.++ +.+...+....++.|.+|++.|+...+. ++....+|..++|.+++.+ +++..|.+.+++.++..
T Consensus 315 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 315 VVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 7788888887 6666667778899999999999999998 4778889999999888865 56778888887777766
Q ss_pred HHHHHhcCCCC
Q 016066 182 VYMRIFLPESV 192 (396)
Q Consensus 182 ~~~~~~~~e~~ 192 (396)
++.++..||++
T Consensus 394 ~~~~~~~~~~~ 404 (417)
T 2cfq_A 394 LISVFTLSGPG 404 (417)
T ss_dssp HHHTTSSCCSC
T ss_pred HHHHhhhcCCC
Confidence 66555556543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=2.3e-13 Score=126.47 Aligned_cols=173 Identities=12% Similarity=0.015 Sum_probs=141.3
Q ss_pred ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc--CCchhhh
Q 016066 5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY--GRKALLT 82 (396)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~~~ 82 (396)
+.++.+.+..++...........+|.+..+ +.+.+..+.+++.+...++..++.++.|+++||+ |||+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 345556677777777777777888888544 3567778899999999999999999999999999 9999998
Q ss_pred HHHHHhH-HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhh-hhHHHHHH
Q 016066 83 VPITLSI-IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG-AFVCGTIS 160 (396)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~ 160 (396)
.+..+.. ++.++..+.++.+ .+.+.+..++.|+ +.+...+....++.|..|+++|++++++.+....+ |..++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8877766 6666666664211 6777888889998 77888888899999999999999999999999999 99999999
Q ss_pred HHHh----hhHHHHHHHHHHHHHHHHHHHH
Q 016066 161 ARFI----STSAAFQAATAGSIISAVYMRI 186 (396)
Q Consensus 161 ~~~~----~~~~~f~~~~~~~~~~~~~~~~ 186 (396)
.+.+ +|+..|++.+++.++..++.++
T Consensus 403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 403 VGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 8875 7889998888887776665544
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.44 E-value=1.9e-12 Score=121.75 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-----ccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHH
Q 016066 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-----FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSF 311 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~ 311 (396)
++.++......++..+.+++...+++.|+++. +|++..+.+++.+...++..+++ ++.|+++|| +|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHH
Confidence 45666777777788888888889999999988 89999999999999999999999 777899999 899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc--chhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016066 312 GLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLT 388 (396)
Q Consensus 312 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (396)
+.++..++.++....++.+...+ .++.+++.+...+...+++.|.+|+++ |+++.++.+....+|..++|.+.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777665555 556688888999999999999999988 778888899999999999999999998
Q ss_pred hcc
Q 016066 389 GDC 391 (396)
Q Consensus 389 ~~~ 391 (396)
+..
T Consensus 171 ~~~ 173 (491)
T 4aps_A 171 EAA 173 (491)
T ss_dssp HHS
T ss_pred hhh
Confidence 753
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=1.9e-12 Score=119.80 Aligned_cols=143 Identities=10% Similarity=-0.018 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016066 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 323 (396)
.....+.............|. +.+.+|.+..+.+++.+...++..++. +..|++.||+|||+.+..+.++.+++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334444444444555555565 456679999999999999999999999 777899999999999999999999998888
Q ss_pred ---HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016066 324 ---SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388 (396)
Q Consensus 324 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 388 (396)
...++.+...+ .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555 566688899999999999999999999999999999999999999999999998
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.40 E-value=4.6e-12 Score=120.11 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc------ccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHH
Q 016066 238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH------FNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLS 310 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~ 310 (396)
++.++...+..++..+.+++...+++.|+.+.+| +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence 3456666777777888888888999999998889 999999999999999999999 7778999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh---HHHHHHHHHHhhhhhhh
Q 016066 311 FGLLFGCVHMFLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC---ISGICSFANLVSPLAFS 385 (396)
Q Consensus 311 ~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~~~~~~~~g 385 (396)
.+.++..++.++..... +.+.... .++.+++.+...+...+++.|.+|+++|+++.+. .+....+|..++|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877 6555544 5566888889999999999999999999877666 88899999999999999
Q ss_pred hhhhc
Q 016066 386 PLTGD 390 (396)
Q Consensus 386 ~l~~~ 390 (396)
.+.+.
T Consensus 170 ~l~~~ 174 (524)
T 2xut_A 170 LLLKN 174 (524)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98875
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.32 E-value=1.9e-11 Score=114.84 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=104.5
Q ss_pred HHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc--cCchhHHHHH-HHHHHHhhhccchhhHH
Q 016066 49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNFFYAYY-VLRTLTAMVCEGSIHCL 125 (396)
Q Consensus 49 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~r~l~G~~~~~~~~~~ 125 (396)
..........+...++.++.+++.||+|||+.++.+.....++.+..+.. ........+. +.-+..+. .....+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 390 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF--AMSWGPV 390 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HTTTTHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--HhHHHHH
Confidence 34455566677888889999999999999999999888888777665432 1111122222 22222222 2334567
Q ss_pred HHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 016066 126 SLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----------STSAAFQAATAGSIISAVYMRIFLPESVRDE 195 (396)
Q Consensus 126 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 195 (396)
...+.+|.+|.+.|++++++......++..+++.+...+ ++...|++.++++++..+..++++||++.+.
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 789999999999999999999998888888876654332 3456788888888888888889999997653
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.30 E-value=1.9e-11 Score=110.72 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016066 244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY 323 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 323 (396)
.....++...........+|.+. +++|.++.+.+...+...+...++. +..|++.||+|||+.+..+..+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 33444455555555566666654 4579999999999999999999999 777899999999999999999999999988
Q ss_pred HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016066 324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD 390 (396)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 390 (396)
...++.+.... .++.+++.+...+...+++.|..|+++|++++++.+....+|..++|.+.+.+.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 88877665555 55568888889999999999999999999999999999999999999999998875
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=49.69 E-value=1.8 Score=20.17 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=10.3
Q ss_pred ccccccccCCchh
Q 016066 68 VGNLSDKYGRKAL 80 (396)
Q Consensus 68 ~G~l~Dr~Grk~~ 80 (396)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5778889999865
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=23.32 E-value=77 Score=26.26 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016066 167 SAAFQAATAGSIISAVYMRIFL 188 (396)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~ 188 (396)
.|.+++.-++..+...+.+.++
T Consensus 204 ~Wvy~vgP~~Ga~la~~~y~~l 225 (266)
T 3d9s_A 204 HWVFWVGPIVGAVLAAILYFYL 225 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeeeehHHHHHHHHHHHHHHHH
Confidence 6777776666655554443333
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=20.51 E-value=72 Score=26.39 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 016066 165 STSAAFQAATAGSIISAVYMRIFL 188 (396)
Q Consensus 165 ~~~~~f~~~~~~~~~~~~~~~~~~ 188 (396)
.+.|.+++.-++..+...+.+..+
T Consensus 199 ~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 199 TNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeHHHHHHHHHHHHHHHHHHHH
Confidence 345777776666655554444333
Done!