Query 016068
Match_columns 396
No_of_seqs 221 out of 1584
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 2.6E-53 8.9E-58 408.7 17.9 275 72-396 10-287 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 9.3E-53 3.2E-57 401.1 19.9 273 74-396 3-278 (283)
3 3byp_A CZRB protein; membrane 99.4 3.4E-12 1.2E-16 100.4 9.8 79 317-396 1-84 (94)
4 2zzt_A Putative uncharacterize 99.2 2.8E-11 9.5E-16 97.6 8.3 77 319-396 1-83 (107)
5 3j1z_P YIIP, cation efflux fam 96.8 0.00061 2.1E-08 64.7 3.7 90 77-174 123-212 (306)
6 3h90_A Ferrous-iron efflux pum 96.7 0.00058 2E-08 64.0 2.6 92 75-174 112-203 (283)
7 3cq1_A Putative uncharacterize 73.1 11 0.00037 28.9 6.9 65 328-395 8-81 (103)
8 3lno_A Putative uncharacterize 72.1 9.4 0.00032 29.6 6.4 65 328-395 10-85 (108)
9 1uwd_A Hypothetical protein TM 66.9 14 0.00049 28.2 6.4 65 328-395 8-82 (103)
10 2jsx_A Protein NAPD; TAT, proo 63.5 20 0.0007 27.1 6.5 58 326-393 17-74 (95)
11 2cvi_A 75AA long hypothetical 55.7 21 0.00072 25.7 5.3 58 327-394 14-72 (83)
12 2zbc_A 83AA long hypothetical 51.0 23 0.00078 25.3 4.8 59 327-395 14-73 (83)
13 3rze_A Histamine H1 receptor, 48.5 1.2E+02 0.0041 28.4 11.0 25 177-201 11-35 (452)
14 3dh4_A Sodium/glucose cotransp 46.7 2.3E+02 0.0078 28.1 13.8 26 189-214 503-528 (530)
15 3uon_A Human M2 muscarinic ace 44.7 1.3E+02 0.0046 28.2 10.7 22 180-201 29-50 (467)
16 2rh1_A Beta-2-adrenergic recep 39.7 1.6E+02 0.0054 28.5 10.5 20 182-201 48-67 (500)
17 4dkl_A MU-type opioid receptor 37.9 1.9E+02 0.0066 27.0 10.6 21 181-201 24-44 (464)
18 3vw7_A Proteinase-activated re 36.4 1.7E+02 0.006 27.6 10.1 22 180-201 26-47 (484)
19 3gxs_A Phenylacetate-coenzyme 35.2 1.4E+02 0.0048 22.3 8.6 61 327-389 15-81 (109)
20 2z73_A Rhodopsin; visual pigme 34.5 1.9E+02 0.0066 27.1 10.0 20 182-201 42-61 (448)
21 3eml_A Human adenosine A2A rec 34.5 2E+02 0.0068 27.1 10.1 22 180-201 27-48 (488)
22 2dbb_A Putative HTH-type trans 34.4 98 0.0033 24.7 6.7 59 327-394 81-140 (151)
23 2cg4_A Regulatory protein ASNC 34.0 78 0.0027 25.4 6.0 59 327-394 81-139 (152)
24 2djw_A Probable transcriptiona 32.6 20 0.00068 26.4 1.9 59 327-394 14-72 (92)
25 3lax_A Phenylacetate-coenzyme 32.3 1.5E+02 0.0053 21.9 9.4 61 327-388 15-80 (109)
26 3pbl_A D(3) dopamine receptor, 30.5 2.8E+02 0.0096 26.0 10.5 24 178-201 42-65 (481)
27 2ks9_A Substance-P receptor; w 29.0 3.2E+02 0.011 24.5 10.2 20 182-201 40-59 (364)
28 3sn6_R Lysozyme, beta-2 adrene 28.9 1.8E+02 0.0062 28.1 8.8 22 180-201 188-209 (514)
29 4eiy_A Adenosine receptor A2A/ 28.6 3.2E+02 0.011 25.3 10.3 22 180-201 37-58 (447)
30 2cyy_A Putative HTH-type trans 28.5 1.2E+02 0.004 24.2 6.3 60 325-395 77-137 (151)
31 3odu_A C-X-C chemokine recepto 28.0 2.6E+02 0.0087 26.5 9.7 21 181-201 55-75 (502)
32 4ea3_A Fusion protein of nocic 27.8 3.2E+02 0.011 25.5 10.3 21 181-201 132-152 (434)
33 3rfu_A Copper efflux ATPase; a 27.5 1.3E+02 0.0044 31.5 7.7 32 295-326 117-149 (736)
34 2oar_A Large-conductance mecha 27.3 50 0.0017 27.9 3.6 9 329-337 138-146 (174)
35 1u19_A Rhodopsin; G protein-co 27.2 3.3E+02 0.011 24.1 10.3 20 182-201 46-65 (349)
36 2yy3_A Elongation factor 1-bet 26.4 2E+02 0.0069 21.4 7.1 67 324-394 17-86 (91)
37 2e1c_A Putative HTH-type trans 26.4 1.3E+02 0.0046 24.8 6.3 59 326-395 98-157 (171)
38 3kog_A Putative pore-forming t 25.6 23 0.00077 31.4 1.2 6 209-214 228-233 (256)
39 2pn6_A ST1022, 150AA long hypo 24.5 1.2E+02 0.0041 24.0 5.6 61 325-395 75-136 (150)
40 3i4p_A Transcriptional regulat 22.8 2.4E+02 0.0082 22.7 7.2 59 326-395 77-136 (162)
41 2k8i_A SLYD, peptidyl-prolyl C 21.6 49 0.0017 27.8 2.6 10 210-219 157-166 (171)
42 4amj_A Beta-1 adrenergic recep 21.6 2.4E+02 0.0081 24.5 7.5 22 180-201 17-38 (315)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=2.6e-53 Score=408.72 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=258.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016068 72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV 151 (396)
Q Consensus 72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~ 151 (396)
..++..++++++|++++++|+++|+++||+||+|||+||++|+++.++++++.+.++||+|++|||||+|+|++++++++
T Consensus 10 ~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~ 89 (306)
T 3j1z_P 10 WVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQS 89 (306)
T ss_dssp CSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 016068 152 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEK 231 (396)
Q Consensus 152 ~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~ 231 (396)
++++++++++++|+++++++|++.....+++++++++++.|+.+++++++.
T Consensus 90 ~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------------- 140 (306)
T 3j1z_P 90 AFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRA----------------------------- 140 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHh-----------------------------
Confidence 999999999999999999999877777888999999999999999888754
Q ss_pred hhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016068 232 LCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~ 311 (396)
+++.+|.+++++++|+++|+++|++++++.++.++ +|+|+||++++++++++++.+++++
T Consensus 141 ------------------~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~~--g~~~~Dpi~ai~Ia~~I~~~~~~l~ 200 (306)
T 3j1z_P 141 ------------------LAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQY--GWWWADGLFAVLIACYIGQQAFDLG 200 (306)
T ss_dssp ------------------HTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCCS--SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHHh--CcchhhhHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999998777654 8999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCCC
Q 016068 312 KTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 312 ~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~v 388 (396)
|++...|+|++|++++.++|++.+++.|||.++|++|+|+. |+++++++||++|++++ +|++.+++|++|++++++
T Consensus 201 ~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~-G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~ 279 (306)
T 3j1z_P 201 YRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQA-GKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED 279 (306)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEE-TTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999997 56888999999999997 478999999999999999
Q ss_pred ceeEEeeC
Q 016068 389 YHVTVQIE 396 (396)
Q Consensus 389 ~~vtV~ve 396 (396)
.++|||+|
T Consensus 280 ~~v~Ihve 287 (306)
T 3j1z_P 280 AEVIIHQD 287 (306)
T ss_dssp CEEEECCE
T ss_pred CeEEEEeC
Confidence 99999987
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=9.3e-53 Score=401.08 Aligned_cols=273 Identities=16% Similarity=0.205 Sum_probs=257.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHH
Q 016068 74 AIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQL 153 (396)
Q Consensus 74 ~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~ 153 (396)
+|.+++++++|++++++|+++|+++||.||+|||+||++|+++.++++++.+.++||+|++|||||+|+|++++++++++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhh
Q 016068 154 IWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLC 233 (396)
Q Consensus 154 l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~~~ 233 (396)
++++++++++|+++++++|++...+.++++++++++++|.++++++++.
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~------------------------------- 131 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV------------------------------- 131 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999877777778999999999999999998754
Q ss_pred hhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHHHH
Q 016068 234 AATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKT 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~~~ 313 (396)
+++.+|++++++++|+++|+++|++++++.++. ++ +|+|+||++++++++++++.+++++++
T Consensus 132 ----------------~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~-~~-g~~~~D~i~~i~ia~~i~~~~~~l~~~ 193 (283)
T 3h90_A 132 ----------------VRRTQSQAVRADMLHYQSDVMMNGAILLALGLS-WY-GWHRADALFALGIGIYILYSALRMGYE 193 (283)
T ss_dssp ----------------HHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC-ST-TSCCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999987764 33 899999999999999999999999999
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCCCce
Q 016068 314 IFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHRIYH 390 (396)
Q Consensus 314 ~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~v~~ 390 (396)
+...|+|++|+++..+++++.++++|||.++|++|+|+. |+++++++||+++++++ .|++.+++++.++++++..+
T Consensus 194 s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~-G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 272 (283)
T 3h90_A 194 AVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSD 272 (283)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEE-TTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEE-CCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCe
Confidence 999999999999999999999999999999999999987 56788999999999987 47899999999999998899
Q ss_pred eEEeeC
Q 016068 391 VTVQIE 396 (396)
Q Consensus 391 vtV~ve 396 (396)
+|||+|
T Consensus 273 v~ih~e 278 (283)
T 3h90_A 273 VIIHQD 278 (283)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999987
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.35 E-value=3.4e-12 Score=100.44 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=68.5
Q ss_pred HHhcCCCCcccHHHHHHHHHcc--cCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCCCcee
Q 016068 317 ILMERTPSEINVARLQRDLECI--KGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHRIYHV 391 (396)
Q Consensus 317 ~Ll~~sp~~~~~~~i~~~l~~~--~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~v~~v 391 (396)
.|||++|++++.++|++.++++ +||.++|++|+|+. |+.+++++||.++++++ ++++.+++++.|++.+++.++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~-g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~v 79 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRA-GPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQA 79 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEE-TTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEE-CCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 4899999999999999999999 99999999999997 56799999999999987 378999999999999987799
Q ss_pred EEeeC
Q 016068 392 TVQIE 396 (396)
Q Consensus 392 tV~ve 396 (396)
|||+|
T Consensus 80 tIh~e 84 (94)
T 3byp_A 80 TIHVE 84 (94)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99986
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.22 E-value=2.8e-11 Score=97.62 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=67.3
Q ss_pred hcCCCCcc--cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCC-CceeE
Q 016068 319 MERTPSEI--NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHR-IYHVT 392 (396)
Q Consensus 319 l~~sp~~~--~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~-v~~vt 392 (396)
||++|+++ ..++|++.++++|||.+|+++|+|.. |+.+++++||.++++++ ++++.+++++.|++.++ +.++|
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRV-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECS-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 57888888 99999999999999999999999985 56889999999999987 36899999999999998 99999
Q ss_pred EeeC
Q 016068 393 VQIE 396 (396)
Q Consensus 393 V~ve 396 (396)
||+|
T Consensus 80 IhvE 83 (107)
T 2zzt_A 80 IHVE 83 (107)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=96.83 E-value=0.00061 Score=64.65 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHHHH
Q 016068 77 LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWL 156 (396)
Q Consensus 77 l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l~~ 156 (396)
...+++.|++++....-.+-..+|.++.||+.|...|+++++..+.+...+. ||+.-++++++++.+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~~ 194 (306)
T 3j1z_P 123 SVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIGQ 194 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHHH
T ss_pred hhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHHH
Confidence 3455677777777777778888999999999999999999988887655432 68889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 016068 157 ISGILVYEAVDRIVHKSP 174 (396)
Q Consensus 157 ~~~~l~~esi~~li~~~~ 174 (396)
.++.++++++..+++..+
T Consensus 195 ~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 195 QAFDLGYRSIQALLDREL 212 (306)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 999999999999998653
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.72 E-value=0.00058 Score=64.01 Aligned_cols=92 Identities=24% Similarity=0.210 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHHHHH
Q 016068 75 IKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLI 154 (396)
Q Consensus 75 ~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~~~l 154 (396)
....+++++|.+++....-.|-..+|.++.||+.|...|+++++..+.+...+ .+|+..++++++++.++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 34456778888888777777778899999999999999999988777664332 3588899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 016068 155 WLISGILVYEAVDRIVHKSP 174 (396)
Q Consensus 155 ~~~~~~l~~esi~~li~~~~ 174 (396)
+..++.++.+++..+++..+
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999997653
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=73.08 E-value=11 Score=28.89 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHHHHcc--cC----ccc---eeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 328 VARLQRDLECI--KG----VQT---IHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 328 ~~~i~~~l~~~--~~----V~~---v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
.+++.+.|+++ |+ +.+ |+++.+ .++++.+.+.+..+.---.+.+.+.+++++++..|+..+.|.+
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v---~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l 81 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLGLIYDLVV---EPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTTCEEEEEE---ETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred HHHHHHHHhCCCCCCCCcCchhcCceEEEEE---ECCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 45677777663 32 222 444443 4565444443333222224689999999998777899988875
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=72.14 E-value=9.4 Score=29.62 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=41.3
Q ss_pred HHHHHHHHHcc--cCc----c---ceeeeEEEEeeC-CeEEEEEEEEeCCCCCHHHHHHHHHHHH-HhhCCCceeEEee
Q 016068 328 VARLQRDLECI--KGV----Q---TIHDLHVWAITV-GKLVLSCHVIAEPAVSSSEILDKIRDYC-QKTHRIYHVTVQI 395 (396)
Q Consensus 328 ~~~i~~~l~~~--~~V----~---~v~~l~~~~~~~-~~~~v~v~I~v~~~~~~~~i~~~i~~~l-~~~~~v~~vtV~v 395 (396)
.++|.+.|+++ |+. . -|+++.+ .+ |++.+++.+..+.---...+.+.+++++ ++..|+..+.|.+
T Consensus 10 ~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v---~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l 85 (108)
T 3lno_A 10 ENKLYANLEAVIDPELGVDIVNLGLVYDVTA---DENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNV 85 (108)
T ss_dssp HHHHHHHGGGCEETTTTEEHHHHTCEEEEEE---CTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHcCCCCCCCCCCHHHcCCceEEEE---CCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 45666667664 331 1 2344443 33 6666666555444333568999999999 7778999998876
No 9
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=66.86 E-value=14 Score=28.17 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=40.6
Q ss_pred HHHHHHHHHcc--cC----ccc---eeeeEEEEeeC-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 328 VARLQRDLECI--KG----VQT---IHDLHVWAITV-GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 328 ~~~i~~~l~~~--~~----V~~---v~~l~~~~~~~-~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
.+++.+.|+++ |+ +.+ |+++.+ .+ |++.+.+.+..+.---.+.+.+.+++++++..++..+.|.+
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v---~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQI---DDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEE---CTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEE---cCCCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 45677777664 32 212 455554 33 55555554443333235789999999998777899988875
No 10
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=63.52 E-value=20 Score=27.12 Aligned_cols=58 Identities=16% Similarity=0.344 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEE
Q 016068 326 INVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV 393 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV 393 (396)
...+.+.+.|+++||+ .+ +.-.-..|++++.+. ..+.+++.+.+ +++++..||.++..
T Consensus 17 ~~~~~V~~~L~~ipgv-Ei---~~~~~~~GkiVV~iE-----a~~~~~l~~~i-~~I~~i~GVlst~l 74 (95)
T 2jsx_A 17 ERISDISTQLNAFPGC-EV---AVSDAPSGQLIVVVE-----AEDSETLIQTI-ESVRNVEGVLAVSL 74 (95)
T ss_dssp TSHHHHHHHHTTSTTE-EE---EEEETTTTEEEEEEE-----ESSHHHHHHHH-HHHTTSTTEEEEEE
T ss_pred CCHHHHHHHHHCCCCe-EE---EEecCCCCCEEEEEE-----eCCHHHHHHHH-HHHhcCCCccEEeE
Confidence 3578999999999997 44 332111467766552 23678888877 77988889888765
No 11
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=55.68 E-value=21 Score=25.75 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=37.7
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
..+++.+.+.++|+|..++ .++|+ .+.+.+ .++ +.+++.+-+.+.+.+..||.++...
T Consensus 14 ~~~~~~~~l~~~peV~e~~-----~vtG~~D~ll~v--~~~---d~~~l~~~i~~~l~~~~gV~~~~T~ 72 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAY-----VVYGEYDLIVKV--ETD---TLKDLDQFITEKIRKMPEIQMTSTM 72 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEE-----ECBSSCSEEEEE--EES---SHHHHHHHHHTTGGGCTTEEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEEE-----EEcccCCEEEEE--EEC---CHHHHHHHHHHHhccCCCEeEEEEE
Confidence 3578999999999987665 34443 455544 443 5566655555677777778776654
No 12
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=50.95 E-value=23 Score=25.26 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=37.4
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
..+.+.+.+.+.|+|..++ .++|+ .+.+. +.++ +.+++.+-+.+.+.+..||.++..++
T Consensus 14 ~~~~~~~~l~~~peV~~~~-----~vtG~~d~l~~--v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~i 73 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVH-----VVYGVYDIVVK--VEAD---SMDKLKDFVTNTIRKLPKVRSTLTMI 73 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEE-----ECSSSCSEEEE--EECS---SHHHHHHHHHHTGGGSTTEEEEEEEE
T ss_pred CHHHHHHHHhCCCCeEEEE-----EEeccCCEEEE--EEEC---CHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 3578889999999886665 34443 34444 4443 45566555556777777787766543
No 13
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=48.49 E-value=1.2e+02 Score=28.43 Aligned_cols=25 Identities=4% Similarity=0.084 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhc
Q 016068 177 NGQLMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 177 ~~~~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
......++.++|++.|++..+.+.+
T Consensus 11 ~~~~~~~~~~~gi~gN~~vi~~~~~ 35 (452)
T 3rze_A 11 LVVVLSTICLVTVGLNLLVLYAVRS 35 (452)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667888999999988877654
No 14
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=46.72 E-value=2.3e+02 Score=28.07 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCC
Q 016068 189 FLINIIMVTCIGHDHAHHACGHNHHI 214 (396)
Q Consensus 189 lv~n~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
+++....+.++++-++.+++++|+|+
T Consensus 503 ~~~~~~~y~~f~~~~~~~~~~~~~~~ 528 (530)
T 3dh4_A 503 MIVLAVLYTLFWVLYKSGGSPGHHHH 528 (530)
T ss_dssp HHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccC
Confidence 33344455556666666555555443
No 15
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=44.73 E-value=1.3e+02 Score=28.19 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
...++.++|++.|++..+.+.+
T Consensus 29 ~~~~~~~~g~~gN~lvi~~~~~ 50 (467)
T 3uon_A 29 VAGSLSLVTIIGNILVMVSIKV 50 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHheeeeee
Confidence 3445678889999988877654
No 16
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=39.73 E-value=1.6e+02 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016068 182 FGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 182 ~~i~~~~lv~n~~~~~~~~~ 201 (396)
.++.++|++.|++..+.+.+
T Consensus 48 ~~i~~~gi~gN~lvi~~i~~ 67 (500)
T 2rh1_A 48 SLIVLAIVFGNVLVITAIAK 67 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34567788888887776653
No 17
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=37.89 E-value=1.9e+02 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016068 181 MFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 181 ~~~i~~~~lv~n~~~~~~~~~ 201 (396)
..++.++|++.|++..+.+.+
T Consensus 24 ~~~~~~~gi~gN~lvi~~~~~ 44 (464)
T 4dkl_A 24 YSIVCVVGLFGNFLVMYVIVR 44 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeehhhhh
Confidence 445678889999888777654
No 18
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=36.39 E-value=1.7e+02 Score=27.58 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
...++.++|++.|++..+.+.+
T Consensus 26 ~~~~i~~~~i~gN~lvi~~~~~ 47 (484)
T 3vw7_A 26 VYTGVFVVSLPLNIMAIVVFIL 47 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455778889999887776653
No 19
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=35.24 E-value=1.4e+02 Score=22.34 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=39.2
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCC------CHHHHHHHHHHHHHhhCCCc
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAV------SSSEILDKIRDYCQKTHRIY 389 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~------~~~~i~~~i~~~l~~~~~v~ 389 (396)
....|++.+.++|+|....-+-+.. .++.=.+.+.+++ ++. +.+++.+.+++.+.+.+++.
T Consensus 15 ~P~eIE~~l~~~p~v~~~~~v~v~~-~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 81 (109)
T 3gxs_A 15 FPIQIETILLQFKELGSDYLITLET-AESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEE-ETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHhCCCcCCcEEEEEEc-CCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCc
Confidence 4578899999999987655555543 2333334555566 442 23578888888887666653
No 20
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=34.47 E-value=1.9e+02 Score=27.14 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016068 182 FGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 182 ~~i~~~~lv~n~~~~~~~~~ 201 (396)
.+++++|++.|++..+.+.+
T Consensus 42 ~ii~i~gi~gN~lvi~vi~~ 61 (448)
T 2z73_A 42 GICGIIGCGGNGIVIYLFTK 61 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhhhh
Confidence 45677888899888877654
No 21
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=34.45 E-value=2e+02 Score=27.12 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
..+++.++|++.|++..+.+.+
T Consensus 27 ~~~~i~~~gi~gN~lvi~~~~~ 48 (488)
T 3eml_A 27 VELAIAVLAILGNVLVCWAVWL 48 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhheee
Confidence 3455788999999998877654
No 22
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.36 E-value=98 Score=24.70 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=36.8
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
..+++.+.+.++|+|..++. ++|+ .+++.+ .++ .+.+++.+-+.+.+.+..+|.++...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~-----vtG~~d~~~~v--~~~--~d~~~l~~~~~~~l~~~~gV~~~~t~ 140 (151)
T 2dbb_A 81 DADKVISEISDIEYVKSVEK-----GVGRYNIIVRL--LLP--KDIKDAENLISEFLQRIKNAENVEVI 140 (151)
T ss_dssp HHHHHHHHHTTCTTEEEEEE-----EESSCSEEEEE--EEE--SSHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred CHHHHHHHHHcCCCeEEEeE-----ecCCCCEEEEE--EEc--CCHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 45688888889998876663 2333 344444 441 14555655555777777778776654
No 23
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=34.01 E-value=78 Score=25.37 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
..+.+.+.+.++|+|..++. ++| .+-+-+.+.++ +.+++.+-+.+.+.+..+|.++...
T Consensus 81 ~~~~~~~~l~~~peV~~~~~-----vtG-~~d~~~~v~~~---d~~~l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYY-----TTG-HYSIFIKVMCR---SIDALQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEE-----ESS-SCSEEEEEEES---CHHHHHHHHHHTTTTSTTEEEEEEE
T ss_pred CHHHHHHHHhCCcCeEEEEE-----Eec-ccCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 56889999999998876663 333 33333334444 5566655566777777778776554
No 24
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=32.61 E-value=20 Score=26.41 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=33.7
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEe
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
..+++.+.+.++|+|..++ .++| .+-.-+++.++ +.+++.+-+.+++.+..+|.++...
T Consensus 14 ~~~~~~~~l~~~peV~~~~-----~vtG-~~D~ll~v~~~---d~~~l~~~l~~~l~~~~gV~~~~T~ 72 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVY-----SVTG-PYDLVALVRLK---DVEELDDVVTQGILSLEGVERTETL 72 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEE-----EESS-SSSEEEEEEES---SGGGHHHHCCCCCTTSTTEEEEEEE
T ss_pred CHHHHHHHHhcCCCeEEEE-----Eeec-CCCEEEEEEEC---CHHHHHHHHHHhcccCCCEeEEEEE
Confidence 4688899999999887665 3333 33333444554 3333433333455555667666543
No 25
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=32.29 E-value=1.5e+02 Score=21.94 Aligned_cols=61 Identities=7% Similarity=-0.044 Sum_probs=39.7
Q ss_pred cHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC-----HHHHHHHHHHHHHhhCCC
Q 016068 327 NVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS-----SSEILDKIRDYCQKTHRI 388 (396)
Q Consensus 327 ~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~-----~~~i~~~i~~~l~~~~~v 388 (396)
....|++.+.++|+|....-+-+.. ..+.-...+.+++.+... .+++.+.+++.+...+++
T Consensus 15 ~P~eIE~vl~~~p~v~~~~vv~v~~-~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 15 FPIQIETILLQFKELGSDYLITLET-AESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEEEEE-ETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCcccceEEEEec-cccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 4578889999999987765555544 233444555666666543 245677788888766664
No 26
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=30.54 E-value=2.8e+02 Score=26.01 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhc
Q 016068 178 GQLMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 178 ~~~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
.....++.++|++.|++..+.+.+
T Consensus 42 ~~~~~~~~~~g~~gN~lvi~~~~~ 65 (481)
T 3pbl_A 42 ALSYCALILAIVFGNGLVCMAVLK 65 (481)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhh
Confidence 345567788999999998777654
No 27
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=28.98 E-value=3.2e+02 Score=24.49 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016068 182 FGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 182 ~~i~~~~lv~n~~~~~~~~~ 201 (396)
.++.++|++.|++..+.+.+
T Consensus 40 ~~i~~~gi~gN~lvi~vi~~ 59 (364)
T 2ks9_A 40 TVIVVTSVVGNVVVMWIILA 59 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34567888899887776653
No 28
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=28.89 E-value=1.8e+02 Score=28.10 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
...++.++|++.|++..+.+.+
T Consensus 188 ~~~ii~~~gi~gN~lvi~vi~~ 209 (514)
T 3sn6_R 188 VMSLIVLAIVFGNVLVITAIAK 209 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhheec
Confidence 4456778899999988876653
No 29
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=28.60 E-value=3.2e+02 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
..+++.++|++.|++..+.+.+
T Consensus 37 i~~~i~~~gi~gN~~vl~~~~~ 58 (447)
T 4eiy_A 37 VELAIAVLAILGNVLVCWAVWL 58 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999988877654
No 30
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.54 E-value=1.2e+02 Score=24.24 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 325 EINVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 325 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
+...+.+.+.+.++|+|..++. ++|+ .+++.+ .++ +.+++.+-+ +.+.+..+|.++...+
T Consensus 77 ~~~~~~~~~~l~~~p~V~~~~~-----~tG~~d~~~~v--~~~---d~~~l~~~~-~~l~~~~gV~~~~t~i 137 (151)
T 2cyy_A 77 AGKYSEVASNLAKYPEIVEVYE-----TTGDYDMVVKI--RTK---NSEELNNFL-DLIGSIPGVEGTHTMI 137 (151)
T ss_dssp TTCHHHHHHHHHTCTTEEEEEE-----CSSSSSEEEEE--EES---SHHHHHHHH-HHHHTSTTEEEEEEEE
T ss_pred cccHHHHHHHHhcCCCeeEeeE-----ecCCCCEEEEE--EEC---CHHHHHHHH-HHHhCCCCEeEEEEEE
Confidence 3457899999999998876653 3332 344444 443 455565555 6777777787766543
No 31
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=27.98 E-value=2.6e+02 Score=26.51 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016068 181 MFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 181 ~~~i~~~~lv~n~~~~~~~~~ 201 (396)
..++.++|++.|++..+.+.+
T Consensus 55 ~~~i~~~g~~gN~lvi~~~~~ 75 (502)
T 3odu_A 55 YSIIFLTGIVGNGLVILVMGY 75 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445678889999988877754
No 32
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=27.76 E-value=3.2e+02 Score=25.46 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 016068 181 MFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 181 ~~~i~~~~lv~n~~~~~~~~~ 201 (396)
.+++.++|++.|++..+.+.+
T Consensus 132 ~~~i~~~gi~gN~lvi~~i~~ 152 (434)
T 4ea3_A 132 YLAVCVGGLLGNCLVMYVILR 152 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHeeeeeee
Confidence 345677888999888776654
No 33
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=27.50 E-value=1.3e+02 Score=31.45 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHH-HHHHHhhHHHHHHHHHHHhcCCCCcc
Q 016068 295 CTLIFA-AFALSTTVPMLKTIFVILMERTPSEI 326 (396)
Q Consensus 295 ~siii~-~~i~~~~~~~~~~~~~~Ll~~sp~~~ 326 (396)
..++++ ..+++.+++.++.++..|..+.++-.
T Consensus 117 ~~~~l~~~v~~~~g~~f~~~a~~~l~~~~~~md 149 (736)
T 3rfu_A 117 IQLLLATPVVLWGGWPFFKRGWQSLKTGQLNMF 149 (736)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCChH
Confidence 344444 45578999999999999988776543
No 34
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=27.32 E-value=50 Score=27.86 Aligned_cols=9 Identities=11% Similarity=0.099 Sum_probs=4.7
Q ss_pred HHHHHHHHc
Q 016068 329 ARLQRDLEC 337 (396)
Q Consensus 329 ~~i~~~l~~ 337 (396)
.+|++.+++
T Consensus 138 ~EIRDlLk~ 146 (174)
T 2oar_A 138 TEIRDLLAQ 146 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555544
No 35
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=27.19 E-value=3.3e+02 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016068 182 FGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 182 ~~i~~~~lv~n~~~~~~~~~ 201 (396)
.++.++|++.|++..+.+.+
T Consensus 46 ~~i~~~gi~gN~lvi~~i~~ 65 (349)
T 1u19_A 46 FLLIMLGFPINFLTLYVTVQ 65 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHheEeehhh
Confidence 45677888899887777654
No 36
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=26.41 E-value=2e+02 Score=21.39 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHcc-cCccceeeeEEEEeeCCeEEEEEEEEeCCC-C-CHHHHHHHHHHHHHhhCCCceeEEe
Q 016068 324 SEINVARLQRDLECI-KGVQTIHDLHVWAITVGKLVLSCHVIAEPA-V-SSSEILDKIRDYCQKTHRIYHVTVQ 394 (396)
Q Consensus 324 ~~~~~~~i~~~l~~~-~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~-~-~~~~i~~~i~~~l~~~~~v~~vtV~ 394 (396)
++.+++++++.+++. +.-........-.++.|-..+.+.+.++.+ - ..+++-+.+++ .-+|.++.|.
T Consensus 17 ~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~lee~i~~----~e~VqSvdV~ 86 (91)
T 2yy3_A 17 PDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEVAEKFEE----VENVESAEVE 86 (91)
T ss_dssp TTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHHHHHHHH----STTEEEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHHHHHHhc----CCCceEEEEE
Confidence 356788888888763 555667777777777887778888888875 3 56666555433 2368877763
No 37
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.40 E-value=1.3e+02 Score=24.76 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 326 INVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
...+++.+.+.++|+|..++. ++|+ .+++.+ .++ +.+++.+-+ +.+.+..+|.++...+
T Consensus 98 ~~~~~v~~~l~~~peV~~~~~-----vtG~~d~l~~v--~~~---d~~~l~~~l-~~l~~~~gV~~~~t~i 157 (171)
T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYE-----TTGDYDMVVKI--RTK---NSEELNNFL-DLIGSIPGVEGTHTMI 157 (171)
T ss_dssp TCHHHHHHHHHTSTTEEEEEE-----CSSSSSEEEEE--EES---SHHHHHHHH-HHHHHSTTEEEEEEEE
T ss_pred chHHHHHHHHhcCcCeEEEEE-----eeCCCCEEEEE--EEC---CHHHHHHHH-HHHhcCCCcceEEEEE
Confidence 456889999999998876653 3332 344444 443 455555555 6677777887766543
No 38
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=25.61 E-value=23 Score=31.43 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.4
Q ss_pred CCCCCC
Q 016068 209 GHNHHI 214 (396)
Q Consensus 209 ~~~~~~ 214 (396)
++|+|.
T Consensus 228 ~~h~ha 233 (256)
T 3kog_A 228 PGHGHA 233 (256)
T ss_dssp TTCSSC
T ss_pred CCcccc
Confidence 334443
No 39
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=24.48 E-value=1.2e+02 Score=24.04 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 325 EINVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 325 ~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
+...+++.+.+.+.|+|..++ .++|. .+++. +..+ +.+++.+-+.+.+.+..+|.++...+
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~-----~~tG~~d~~~~--v~~~---d~~~l~~~l~~~l~~~~gV~~~~t~i 136 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVY-----FVLGDNDFIVM--ARYK---TREEFMEKFLERVMSIPEVERTSTQV 136 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEE-----ECSSSCSEEEE--EEES---SHHHHHHHTHHHHTTCTTEEEEEEEE
T ss_pred hhHHHHHHHHHhcCchhhhhh-----hhcCcCCEEEE--EEEC---CHHHHHHHHHHHhccCCCeeEEEEEE
Confidence 456788999999999886655 33332 34444 4443 55666566667787777887766543
No 40
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.79 E-value=2.4e+02 Score=22.75 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHcccCccceeeeEEEEeeCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceeEEee
Q 016068 326 INVARLQRDLECIKGVQTIHDLHVWAITVG-KLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQI 395 (396)
Q Consensus 326 ~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~-~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v~~vtV~v 395 (396)
+..+.+.+.+.++|+|..++. ++|+ .+++.+ .++ +.+++.+-+.+.+.+.. |.++...+
T Consensus 77 ~~~~~~~~~l~~~peV~~~~~-----vtG~~D~~l~v--~~~---d~~~l~~~l~~~l~~~~-V~~~~T~i 136 (162)
T 3i4p_A 77 EWLKRFSEVVSEFPEVVEFYR-----MSGDVDYLLRV--VVP---DIAAYDAFYKRMIAKIE-IRDVSSAF 136 (162)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-----CCSSCSEEEEE--EES---SHHHHHHHHHHHHHHCC-CSEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEeee-----cCCCCCEEEEE--EEC---CHHHHHHHHHHHhhcCC-eeEEEEEE
Confidence 357889999999999876663 3332 354444 443 45566555666666555 77766543
No 41
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=21.61 E-value=49 Score=27.80 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 016068 210 HNHHIGGHVH 219 (396)
Q Consensus 210 ~~~~~~~h~~ 219 (396)
+|+|+|.|+|
T Consensus 157 g~~~~~~~~~ 166 (171)
T 2k8i_A 157 DHHHDHDHDH 166 (171)
T ss_dssp CSSSCSCCCC
T ss_pred CcCCCCcccc
Confidence 3444444433
No 42
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=21.57 E-value=2.4e+02 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 016068 180 LMFGVAAFGFLINIIMVTCIGH 201 (396)
Q Consensus 180 ~~~~i~~~~lv~n~~~~~~~~~ 201 (396)
...++.++|++.|.+..+.+.+
T Consensus 17 ~~~~~~~~gi~gN~lvi~~i~~ 38 (315)
T 4amj_A 17 LMALVVLLIVAGNVLVIAAIGS 38 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHhhh
Confidence 4456778889999988877754
Done!