Query 016069
Match_columns 396
No_of_seqs 188 out of 2434
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3E-45 6.6E-50 351.5 24.3 362 8-394 2-397 (531)
2 PLN02172 flavin-containing mon 100.0 1.1E-38 2.4E-43 302.7 32.0 312 7-394 10-353 (461)
3 COG2072 TrkA Predicted flavopr 100.0 2.7E-36 5.9E-41 285.3 33.0 353 6-374 7-389 (443)
4 TIGR01292 TRX_reduct thioredox 100.0 8E-35 1.7E-39 265.6 28.4 284 8-393 1-300 (300)
5 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.1E-35 2.3E-40 277.9 23.0 302 7-391 4-334 (454)
6 COG0492 TrxB Thioredoxin reduc 100.0 6.3E-34 1.4E-38 254.0 28.3 286 7-395 3-302 (305)
7 PRK10262 thioredoxin reductase 100.0 7.3E-34 1.6E-38 261.0 28.4 289 7-394 6-315 (321)
8 COG1252 Ndh NADH dehydrogenase 100.0 1.2E-34 2.6E-39 264.1 20.4 291 7-394 3-332 (405)
9 PLN02507 glutathione reductase 100.0 4.8E-34 1E-38 275.1 25.2 304 7-392 25-363 (499)
10 PRK05249 soluble pyridine nucl 100.0 6.4E-34 1.4E-38 274.2 24.8 306 7-392 5-335 (461)
11 TIGR01421 gluta_reduc_1 glutat 100.0 6.4E-34 1.4E-38 271.8 24.2 297 7-391 2-327 (450)
12 PRK15317 alkyl hydroperoxide r 100.0 5.6E-33 1.2E-37 269.9 28.7 286 6-394 210-512 (517)
13 KOG1399 Flavin-containing mono 100.0 5.7E-33 1.2E-37 258.5 25.0 309 7-393 6-333 (448)
14 TIGR03140 AhpF alkyl hydropero 100.0 9.9E-33 2.1E-37 267.8 27.7 286 6-394 211-513 (515)
15 TIGR01424 gluta_reduc_2 glutat 100.0 3.4E-33 7.3E-38 267.2 24.0 298 7-391 2-325 (446)
16 PTZ00318 NADH dehydrogenase-li 100.0 1.4E-33 3.1E-38 267.8 21.2 301 6-394 9-348 (424)
17 PRK06116 glutathione reductase 100.0 5.3E-33 1.2E-37 266.6 24.9 297 7-392 4-328 (450)
18 PRK06370 mercuric reductase; V 100.0 6.5E-33 1.4E-37 266.8 24.1 298 7-392 5-334 (463)
19 PRK14694 putative mercuric red 100.0 1.9E-32 4.2E-37 263.5 26.4 304 6-391 5-334 (468)
20 PRK14727 putative mercuric red 100.0 1.8E-32 3.9E-37 264.1 25.6 310 1-392 10-346 (479)
21 PRK06467 dihydrolipoamide dehy 100.0 1.6E-32 3.4E-37 263.8 25.0 304 7-392 4-337 (471)
22 PRK08010 pyridine nucleotide-d 100.0 1E-32 2.2E-37 264.0 23.5 299 7-391 3-316 (441)
23 TIGR02053 MerA mercuric reduct 100.0 7.6E-33 1.6E-37 266.5 22.1 300 8-392 1-329 (463)
24 PRK06416 dihydrolipoamide dehy 100.0 3.1E-32 6.7E-37 262.4 25.0 302 6-392 3-334 (462)
25 TIGR03143 AhpF_homolog putativ 100.0 9.6E-32 2.1E-36 262.7 28.0 285 7-394 4-309 (555)
26 PRK13512 coenzyme A disulfide 100.0 4.5E-32 9.8E-37 258.6 24.9 285 8-392 2-312 (438)
27 PRK07818 dihydrolipoamide dehy 100.0 7.2E-32 1.6E-36 259.6 25.8 307 7-392 4-336 (466)
28 PRK13748 putative mercuric red 100.0 6.1E-32 1.3E-36 266.5 25.8 302 7-391 98-427 (561)
29 PTZ00058 glutathione reductase 100.0 8.5E-32 1.8E-36 260.4 25.5 306 6-392 47-432 (561)
30 TIGR01423 trypano_reduc trypan 100.0 6.1E-32 1.3E-36 258.9 24.0 307 6-391 2-350 (486)
31 PRK07846 mycothione reductase; 100.0 9.1E-32 2E-36 256.9 23.0 297 7-392 1-325 (451)
32 PLN02546 glutathione reductase 100.0 3.5E-32 7.5E-37 263.3 20.1 298 7-391 79-412 (558)
33 PRK07845 flavoprotein disulfid 100.0 2.5E-31 5.3E-36 255.4 25.7 307 8-391 2-336 (466)
34 PRK05976 dihydrolipoamide dehy 100.0 1.9E-31 4.1E-36 257.2 24.4 308 7-392 4-343 (472)
35 PTZ00052 thioredoxin reductase 100.0 7.4E-32 1.6E-36 260.2 21.1 307 7-392 5-341 (499)
36 PRK06115 dihydrolipoamide dehy 100.0 3.7E-31 8E-36 254.1 25.0 303 7-392 3-338 (466)
37 KOG0405 Pyridine nucleotide-di 100.0 2E-31 4.3E-36 229.7 20.5 309 4-392 17-350 (478)
38 TIGR01438 TGR thioredoxin and 100.0 4.3E-31 9.4E-36 253.7 25.1 303 7-391 2-343 (484)
39 PRK06292 dihydrolipoamide dehy 100.0 2.4E-31 5.1E-36 256.3 23.3 301 7-392 3-331 (460)
40 PRK14989 nitrite reductase sub 100.0 1.4E-31 2.9E-36 270.1 22.3 283 7-392 3-310 (847)
41 PRK07251 pyridine nucleotide-d 100.0 1.6E-30 3.4E-35 248.7 26.3 291 7-391 3-315 (438)
42 PRK09564 coenzyme A disulfide 100.0 6.6E-31 1.4E-35 252.3 23.0 287 8-392 1-317 (444)
43 PRK06912 acoL dihydrolipoamide 100.0 1E-30 2.3E-35 250.9 24.0 300 9-391 2-329 (458)
44 PRK06327 dihydrolipoamide dehy 100.0 1.3E-30 2.8E-35 251.2 24.5 308 7-392 4-347 (475)
45 TIGR01350 lipoamide_DH dihydro 100.0 2E-30 4.4E-35 250.0 24.9 302 8-392 2-332 (461)
46 PRK04965 NADH:flavorubredoxin 100.0 1.4E-30 3E-35 244.4 22.1 278 8-392 3-302 (377)
47 PRK12831 putative oxidoreducta 100.0 2.9E-30 6.2E-35 246.7 22.0 279 6-395 139-462 (464)
48 TIGR03169 Nterm_to_SelD pyridi 100.0 1.9E-30 4E-35 242.8 20.3 289 9-394 1-311 (364)
49 TIGR03452 mycothione_red mycot 100.0 3.7E-30 8.1E-35 246.1 22.7 298 7-392 2-328 (452)
50 TIGR01316 gltA glutamate synth 100.0 4.1E-30 8.9E-35 245.4 22.6 273 6-393 132-449 (449)
51 PRK09754 phenylpropionate diox 100.0 2.9E-30 6.3E-35 243.5 20.4 283 7-393 3-310 (396)
52 KOG0404 Thioredoxin reductase 100.0 5.7E-30 1.2E-34 207.7 18.0 285 8-392 9-317 (322)
53 PTZ00153 lipoamide dehydrogena 100.0 3.9E-30 8.5E-35 251.9 20.5 311 7-392 116-495 (659)
54 PRK11749 dihydropyrimidine deh 100.0 5.8E-30 1.3E-34 245.6 21.0 277 6-395 139-453 (457)
55 TIGR02374 nitri_red_nirB nitri 100.0 1.2E-29 2.6E-34 256.4 21.0 279 10-392 1-301 (785)
56 PRK12779 putative bifunctional 100.0 4.7E-29 1E-33 254.0 24.9 277 6-394 305-627 (944)
57 PRK12770 putative glutamate sy 100.0 3.3E-28 7.2E-33 225.9 24.1 288 5-394 16-350 (352)
58 PRK09853 putative selenate red 100.0 1.5E-28 3.3E-33 246.4 23.3 272 6-394 538-842 (1019)
59 PRK12778 putative bifunctional 100.0 2.3E-28 5.1E-33 247.3 22.8 276 6-395 430-751 (752)
60 PF13738 Pyr_redox_3: Pyridine 100.0 9.7E-29 2.1E-33 212.2 13.7 190 11-221 1-202 (203)
61 PRK12814 putative NADPH-depend 100.0 9E-28 2E-32 238.4 22.4 274 7-394 193-501 (652)
62 KOG4716 Thioredoxin reductase 100.0 2.1E-27 4.6E-32 204.2 20.4 325 6-391 18-364 (503)
63 PRK12810 gltD glutamate syntha 100.0 1.4E-27 3.1E-32 229.5 21.3 284 7-394 143-465 (471)
64 TIGR03315 Se_ygfK putative sel 100.0 2.7E-27 5.8E-32 238.7 22.8 271 7-393 537-839 (1012)
65 PRK12775 putative trifunctiona 100.0 2.9E-27 6.3E-32 243.0 22.7 277 7-394 430-755 (1006)
66 PRK12769 putative oxidoreducta 100.0 5E-27 1.1E-31 234.1 22.8 276 6-394 326-652 (654)
67 TIGR01318 gltD_gamma_fam gluta 100.0 7.3E-27 1.6E-31 223.7 22.0 276 6-394 140-466 (467)
68 KOG1336 Monodehydroascorbate/f 100.0 3.6E-27 7.9E-32 213.2 17.8 264 7-374 74-352 (478)
69 KOG2495 NADH-dehydrogenase (ub 99.9 2.3E-26 4.9E-31 204.3 18.3 299 7-392 55-395 (491)
70 PRK12809 putative oxidoreducta 99.9 8.1E-26 1.8E-30 224.5 21.2 277 6-395 309-636 (639)
71 KOG1335 Dihydrolipoamide dehyd 99.9 6.5E-26 1.4E-30 198.2 17.8 313 6-391 38-376 (506)
72 TIGR03385 CoA_CoA_reduc CoA-di 99.9 1.2E-25 2.5E-30 214.7 19.6 274 21-392 1-304 (427)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 2.7E-25 5.8E-30 192.0 17.3 270 6-376 210-493 (520)
74 COG1251 NirB NAD(P)H-nitrite r 99.9 2.4E-25 5.3E-30 210.6 17.3 284 7-393 3-307 (793)
75 PRK13984 putative oxidoreducta 99.9 6.1E-25 1.3E-29 218.0 20.8 275 6-394 282-602 (604)
76 TIGR01317 GOGAT_sm_gam glutama 99.9 2.2E-24 4.8E-29 207.4 22.8 289 7-394 143-479 (485)
77 PRK12771 putative glutamate sy 99.9 1.5E-24 3.2E-29 213.2 21.4 274 6-394 136-444 (564)
78 PF13434 K_oxygenase: L-lysine 99.9 1.1E-25 2.5E-30 205.6 10.8 298 7-330 2-340 (341)
79 PLN02852 ferredoxin-NADP+ redu 99.9 1.6E-23 3.5E-28 198.4 23.4 330 7-394 26-422 (491)
80 TIGR01372 soxA sarcosine oxida 99.9 4E-23 8.6E-28 213.9 26.2 282 7-393 163-471 (985)
81 COG3486 IucD Lysine/ornithine 99.9 3.5E-23 7.6E-28 183.8 20.5 354 7-394 5-415 (436)
82 KOG0399 Glutamate synthase [Am 99.8 4.7E-20 1E-24 179.6 14.8 305 6-391 1784-2117(2142)
83 COG0446 HcaD Uncharacterized N 99.8 3.3E-18 7.2E-23 163.2 18.5 276 10-391 1-309 (415)
84 COG0493 GltD NADPH-dependent g 99.8 8.1E-19 1.8E-23 164.9 12.9 295 7-391 123-448 (457)
85 COG4529 Uncharacterized protei 99.8 9.1E-16 2E-20 140.7 26.5 360 8-390 2-459 (474)
86 KOG1800 Ferredoxin/adrenodoxin 99.7 9.9E-16 2.2E-20 134.8 22.2 161 6-220 19-215 (468)
87 PTZ00188 adrenodoxin reductase 99.7 1.2E-15 2.5E-20 142.8 23.5 43 7-49 39-82 (506)
88 PRK06567 putative bifunctional 99.7 2.1E-16 4.6E-21 157.6 17.4 199 6-238 382-604 (1028)
89 KOG1346 Programmed cell death 99.7 6.6E-17 1.4E-21 143.5 11.8 301 7-394 178-521 (659)
90 PRK09897 hypothetical protein; 99.7 1.7E-15 3.7E-20 145.7 21.6 192 8-220 2-246 (534)
91 KOG2755 Oxidoreductase [Genera 99.6 7.4E-15 1.6E-19 123.0 12.7 292 9-374 1-322 (334)
92 PF07992 Pyr_redox_2: Pyridine 99.6 1.3E-15 2.7E-20 130.5 4.6 121 9-159 1-130 (201)
93 COG2081 Predicted flavoprotein 99.4 4.2E-13 9.1E-18 120.4 10.2 136 7-154 3-172 (408)
94 KOG3851 Sulfide:quinone oxidor 99.4 1.4E-11 3.1E-16 106.4 17.5 289 5-394 37-361 (446)
95 COG1148 HdrA Heterodisulfide r 99.4 8.6E-11 1.9E-15 107.2 20.9 39 7-45 124-162 (622)
96 PF13454 NAD_binding_9: FAD-NA 99.4 1.6E-11 3.5E-16 100.1 12.8 126 11-147 1-155 (156)
97 PF03486 HI0933_like: HI0933-l 99.3 5.8E-12 1.3E-16 117.8 10.8 135 8-153 1-170 (409)
98 PRK05329 anaerobic glycerol-3- 99.3 3.4E-10 7.3E-15 106.4 18.3 34 7-40 2-35 (422)
99 PRK10157 putative oxidoreducta 99.3 1.2E-10 2.6E-15 111.0 15.1 135 1-149 1-164 (428)
100 TIGR02023 BchP-ChlP geranylger 99.3 1.1E-10 2.4E-15 110.3 14.6 135 8-149 1-155 (388)
101 TIGR02032 GG-red-SF geranylger 99.3 5.7E-11 1.2E-15 107.9 12.2 131 8-149 1-148 (295)
102 PRK04176 ribulose-1,5-biphosph 99.2 2.3E-10 4.9E-15 101.0 13.3 138 7-149 25-173 (257)
103 TIGR00292 thiazole biosynthesi 99.2 2.9E-10 6.3E-15 99.9 13.2 136 7-147 21-168 (254)
104 PRK06847 hypothetical protein; 99.2 5.6E-10 1.2E-14 105.1 15.8 133 7-151 4-165 (375)
105 PRK06834 hypothetical protein; 99.2 3.3E-10 7.1E-15 109.6 14.4 131 7-149 3-156 (488)
106 PLN02463 lycopene beta cyclase 99.2 2.9E-10 6.3E-15 108.1 13.5 125 7-149 28-169 (447)
107 COG1635 THI4 Ribulose 1,5-bisp 99.2 2.3E-10 4.9E-15 94.2 10.8 136 7-147 30-176 (262)
108 PRK08244 hypothetical protein; 99.2 5.2E-10 1.1E-14 109.1 15.6 134 7-149 2-159 (493)
109 PRK08013 oxidoreductase; Provi 99.2 3.3E-10 7.1E-15 107.5 13.3 132 7-150 3-169 (400)
110 PF01494 FAD_binding_3: FAD bi 99.2 2E-10 4.3E-15 107.1 11.6 134 8-149 2-172 (356)
111 COG0644 FixC Dehydrogenases (f 99.2 3.1E-10 6.7E-15 107.3 12.9 131 7-148 3-151 (396)
112 PRK06184 hypothetical protein; 99.2 7E-10 1.5E-14 108.4 15.7 134 7-149 3-168 (502)
113 PRK07190 hypothetical protein; 99.2 6.1E-10 1.3E-14 107.7 15.0 135 1-149 1-165 (487)
114 PRK10015 oxidoreductase; Provi 99.2 7.6E-10 1.6E-14 105.5 15.2 135 1-149 1-164 (429)
115 PRK08773 2-octaprenyl-3-methyl 99.2 5.6E-10 1.2E-14 105.7 14.0 136 1-149 1-169 (392)
116 PRK06183 mhpA 3-(3-hydroxyphen 99.2 9.9E-10 2.2E-14 108.1 16.1 137 6-150 9-175 (538)
117 TIGR01790 carotene-cycl lycope 99.2 6.3E-10 1.4E-14 105.2 14.3 129 9-149 1-141 (388)
118 PRK05714 2-octaprenyl-3-methyl 99.1 4.9E-10 1.1E-14 106.6 12.1 132 7-150 2-169 (405)
119 PRK07045 putative monooxygenas 99.1 1.3E-09 2.8E-14 103.1 14.7 134 7-150 5-166 (388)
120 PLN00093 geranylgeranyl diphos 99.1 1.2E-09 2.7E-14 104.3 13.7 139 6-149 38-199 (450)
121 PRK07364 2-octaprenyl-6-methox 99.1 1.5E-09 3.3E-14 103.6 14.5 136 6-150 17-182 (415)
122 PRK07494 2-octaprenyl-6-methox 99.1 9.7E-10 2.1E-14 104.0 12.9 131 7-149 7-167 (388)
123 COG0654 UbiH 2-polyprenyl-6-me 99.1 1.1E-09 2.4E-14 103.3 13.2 131 7-149 2-162 (387)
124 PRK06126 hypothetical protein; 99.1 2.6E-09 5.7E-14 105.5 16.4 139 5-150 5-189 (545)
125 PRK07333 2-octaprenyl-6-methox 99.1 1.1E-09 2.5E-14 104.1 13.4 130 8-149 2-167 (403)
126 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.1E-09 2.4E-14 103.7 12.7 131 7-149 5-169 (391)
127 PRK06185 hypothetical protein; 99.1 1.8E-09 3.8E-14 102.9 13.8 140 1-149 1-169 (407)
128 PRK06753 hypothetical protein; 99.1 1.7E-09 3.6E-14 101.8 13.5 127 8-149 1-152 (373)
129 PRK08132 FAD-dependent oxidore 99.1 3.7E-09 8E-14 104.4 16.3 137 5-150 21-186 (547)
130 PF05834 Lycopene_cycl: Lycope 99.1 1.5E-09 3.3E-14 101.7 12.9 120 9-147 1-140 (374)
131 PF01946 Thi4: Thi4 family; PD 99.1 1.5E-09 3.2E-14 90.0 10.4 135 7-147 17-163 (230)
132 PRK08163 salicylate hydroxylas 99.1 1.3E-09 2.8E-14 103.5 11.7 133 7-151 4-168 (396)
133 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.9E-09 4.2E-14 101.9 12.6 129 9-149 1-163 (385)
134 TIGR02028 ChlP geranylgeranyl 99.0 3.8E-09 8.1E-14 99.9 14.4 137 8-149 1-160 (398)
135 PRK07588 hypothetical protein; 99.0 2.4E-09 5.2E-14 101.4 12.8 132 8-152 1-161 (391)
136 PRK11445 putative oxidoreducta 99.0 3.9E-09 8.4E-14 98.3 13.9 133 7-150 1-158 (351)
137 PRK07236 hypothetical protein; 99.0 4.2E-09 9.1E-14 99.5 14.1 137 1-152 1-157 (386)
138 PRK06617 2-octaprenyl-6-methox 99.0 3.4E-09 7.4E-14 99.6 13.4 130 8-151 2-162 (374)
139 PRK07608 ubiquinone biosynthes 99.0 2.9E-09 6.3E-14 100.7 13.0 131 7-150 5-168 (388)
140 PRK09126 hypothetical protein; 99.0 3.7E-09 8E-14 100.2 13.5 131 7-149 3-167 (392)
141 PLN02697 lycopene epsilon cycl 99.0 5.7E-09 1.2E-13 100.9 14.3 129 7-149 108-248 (529)
142 PRK08243 4-hydroxybenzoate 3-m 99.0 4.8E-09 1E-13 99.3 13.6 135 7-151 2-165 (392)
143 TIGR01989 COQ6 Ubiquinone bios 99.0 3.5E-09 7.6E-14 101.6 12.5 136 8-151 1-185 (437)
144 PRK07538 hypothetical protein; 99.0 3.1E-08 6.8E-13 94.4 18.3 137 8-150 1-166 (413)
145 PRK08849 2-octaprenyl-3-methyl 99.0 5.5E-09 1.2E-13 98.6 12.7 132 7-150 3-168 (384)
146 COG3380 Predicted NAD/FAD-depe 99.0 2.7E-09 5.8E-14 90.7 9.3 123 9-147 3-158 (331)
147 PRK05732 2-octaprenyl-6-methox 99.0 6.2E-09 1.3E-13 98.8 12.9 131 7-149 3-169 (395)
148 TIGR01984 UbiH 2-polyprenyl-6- 99.0 5.1E-09 1.1E-13 98.9 12.3 129 9-149 1-162 (382)
149 PF01266 DAO: FAD dependent ox 99.0 3.2E-09 7E-14 99.1 10.8 59 78-149 144-203 (358)
150 PRK08850 2-octaprenyl-6-methox 99.0 7.3E-09 1.6E-13 98.5 12.7 131 7-149 4-168 (405)
151 KOG2820 FAD-dependent oxidored 99.0 7.5E-09 1.6E-13 90.7 11.5 145 1-155 1-218 (399)
152 TIGR00275 flavoprotein, HI0933 99.0 8.1E-09 1.8E-13 97.6 12.7 129 11-152 1-163 (400)
153 PRK05868 hypothetical protein; 99.0 1.6E-08 3.6E-13 94.8 14.7 131 8-151 2-162 (372)
154 PRK08294 phenol 2-monooxygenas 99.0 2E-08 4.4E-13 100.1 16.0 142 7-150 32-211 (634)
155 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 1.4E-08 3.1E-13 95.8 13.5 136 7-151 2-165 (390)
156 PRK05192 tRNA uridine 5-carbox 98.9 8.4E-09 1.8E-13 100.0 11.8 131 7-149 4-157 (618)
157 PRK06996 hypothetical protein; 98.9 1.5E-08 3.2E-13 96.1 12.5 132 6-147 10-172 (398)
158 PF00070 Pyr_redox: Pyridine n 98.9 3.7E-09 8.1E-14 75.6 6.0 74 188-315 1-80 (80)
159 PRK06475 salicylate hydroxylas 98.9 2.6E-08 5.7E-13 94.5 13.3 135 8-151 3-169 (400)
160 PRK13369 glycerol-3-phosphate 98.9 4.8E-08 1E-12 95.3 14.9 64 79-150 153-216 (502)
161 TIGR03219 salicylate_mono sali 98.9 1.9E-08 4.2E-13 95.9 11.9 129 8-150 1-160 (414)
162 TIGR01377 soxA_mon sarcosine o 98.9 3.3E-08 7.2E-13 93.3 13.2 59 79-150 143-201 (380)
163 PRK11259 solA N-methyltryptoph 98.9 3.3E-08 7.2E-13 93.1 13.1 61 79-152 147-207 (376)
164 PRK12266 glpD glycerol-3-phosp 98.9 6.6E-08 1.4E-12 94.3 15.2 62 81-149 155-216 (508)
165 PF12831 FAD_oxidored: FAD dep 98.9 2.1E-09 4.6E-14 102.5 4.7 131 9-147 1-148 (428)
166 PF00070 Pyr_redox: Pyridine n 98.8 5.9E-08 1.3E-12 69.3 10.7 80 9-125 1-80 (80)
167 PF13450 NAD_binding_8: NAD(P) 98.8 5.4E-09 1.2E-13 71.8 4.9 50 12-61 1-50 (68)
168 PRK11728 hydroxyglutarate oxid 98.8 5.5E-08 1.2E-12 92.1 13.5 58 79-149 147-204 (393)
169 PRK06481 fumarate reductase fl 98.8 1.2E-07 2.7E-12 92.4 15.8 39 6-44 60-98 (506)
170 PLN02661 Putative thiazole syn 98.8 3.4E-08 7.4E-13 89.4 10.4 135 7-147 92-242 (357)
171 PRK11101 glpA sn-glycerol-3-ph 98.8 8.8E-08 1.9E-12 94.2 14.0 35 7-41 6-40 (546)
172 TIGR01813 flavo_cyto_c flavocy 98.8 1.6E-07 3.5E-12 90.3 15.6 135 9-150 1-193 (439)
173 PTZ00383 malate:quinone oxidor 98.8 7.5E-08 1.6E-12 92.8 13.0 63 78-150 208-274 (497)
174 PLN02985 squalene monooxygenas 98.8 1.4E-07 3E-12 91.9 14.9 137 6-150 42-209 (514)
175 COG0579 Predicted dehydrogenas 98.8 2.5E-08 5.4E-13 92.8 9.1 62 78-149 150-211 (429)
176 PF01134 GIDA: Glucose inhibit 98.7 1E-07 2.2E-12 87.7 11.8 127 9-147 1-150 (392)
177 TIGR01789 lycopene_cycl lycope 98.7 8.9E-08 1.9E-12 89.5 11.6 133 9-162 1-149 (370)
178 TIGR03329 Phn_aa_oxid putative 98.7 9.9E-08 2.1E-12 92.2 12.1 60 79-152 181-240 (460)
179 PRK12409 D-amino acid dehydrog 98.7 2.9E-07 6.3E-12 87.8 14.8 63 80-149 196-258 (410)
180 PLN02927 antheraxanthin epoxid 98.7 2.4E-07 5.3E-12 91.5 14.0 131 6-150 80-249 (668)
181 TIGR00136 gidA glucose-inhibit 98.7 2.7E-07 5.9E-12 89.5 14.0 131 8-149 1-154 (617)
182 PRK13339 malate:quinone oxidor 98.7 3.6E-07 7.8E-12 87.8 14.6 34 7-40 6-41 (497)
183 COG1249 Lpd Pyruvate/2-oxoglut 98.7 3.6E-07 7.9E-12 86.6 14.2 106 6-156 172-277 (454)
184 TIGR01373 soxB sarcosine oxida 98.7 2.6E-07 5.6E-12 88.0 13.3 35 6-40 29-65 (407)
185 PRK05976 dihydrolipoamide dehy 98.7 6.3E-07 1.4E-11 87.0 16.0 106 7-155 180-285 (472)
186 PF00890 FAD_binding_2: FAD bi 98.7 2E-07 4.2E-12 89.2 12.3 136 9-150 1-204 (417)
187 PRK01747 mnmC bifunctional tRN 98.7 1.5E-07 3.2E-12 95.1 11.9 59 79-150 406-464 (662)
188 TIGR03364 HpnW_proposed FAD de 98.7 2.2E-07 4.8E-12 87.1 12.3 33 8-40 1-33 (365)
189 PRK08274 tricarballylate dehyd 98.7 7.2E-07 1.6E-11 86.5 15.8 35 7-41 4-38 (466)
190 PLN02464 glycerol-3-phosphate 98.7 4.8E-07 1E-11 90.2 14.5 37 6-42 70-106 (627)
191 TIGR01350 lipoamide_DH dihydro 98.7 1E-06 2.2E-11 85.4 16.5 103 7-154 170-272 (461)
192 COG0029 NadB Aspartate oxidase 98.7 3.8E-07 8.2E-12 84.6 12.6 132 9-149 9-196 (518)
193 PF04820 Trp_halogenase: Trypt 98.6 6.9E-08 1.5E-12 92.5 7.8 59 78-147 151-209 (454)
194 PRK07121 hypothetical protein; 98.6 1.3E-06 2.8E-11 85.3 16.1 38 7-44 20-57 (492)
195 COG0578 GlpA Glycerol-3-phosph 98.6 8.5E-07 1.8E-11 84.5 14.0 61 82-149 165-225 (532)
196 PRK08958 sdhA succinate dehydr 98.6 7.3E-07 1.6E-11 88.4 14.0 43 1-43 1-43 (588)
197 TIGR01320 mal_quin_oxido malat 98.6 8.1E-07 1.8E-11 85.8 13.8 65 79-149 176-240 (483)
198 PRK04965 NADH:flavorubredoxin 98.6 5.9E-07 1.3E-11 84.6 12.6 100 7-152 141-240 (377)
199 KOG2415 Electron transfer flav 98.6 4.3E-07 9.3E-12 82.0 10.6 145 2-148 71-255 (621)
200 PRK08275 putative oxidoreducta 98.6 2.1E-06 4.5E-11 84.8 16.3 145 1-150 3-201 (554)
201 TIGR03378 glycerol3P_GlpB glyc 98.6 1.8E-05 3.8E-10 74.0 21.2 33 8-40 1-33 (419)
202 PRK08401 L-aspartate oxidase; 98.6 8.1E-07 1.8E-11 85.8 12.9 35 8-42 2-36 (466)
203 PRK07251 pyridine nucleotide-d 98.6 1.2E-06 2.6E-11 84.3 14.0 100 7-154 157-256 (438)
204 PRK09078 sdhA succinate dehydr 98.6 2E-06 4.3E-11 85.6 15.9 38 6-43 11-48 (598)
205 PLN00128 Succinate dehydrogena 98.6 1.9E-06 4.2E-11 85.9 15.5 38 7-44 50-87 (635)
206 PTZ00139 Succinate dehydrogena 98.6 2.2E-06 4.8E-11 85.4 15.9 38 7-44 29-66 (617)
207 PRK06416 dihydrolipoamide dehy 98.6 1.7E-06 3.6E-11 83.9 14.7 105 7-155 172-276 (462)
208 PRK07057 sdhA succinate dehydr 98.5 2.4E-06 5.1E-11 84.9 15.9 36 7-42 12-47 (591)
209 PRK07804 L-aspartate oxidase; 98.5 1.3E-06 2.7E-11 86.0 13.5 37 7-43 16-52 (541)
210 KOG1335 Dihydrolipoamide dehyd 98.5 3E-06 6.5E-11 75.9 13.7 157 7-209 211-367 (506)
211 TIGR02053 MerA mercuric reduct 98.5 7.5E-06 1.6E-10 79.3 18.0 105 7-155 166-270 (463)
212 PRK06912 acoL dihydrolipoamide 98.5 2.4E-06 5.1E-11 82.6 14.4 102 7-154 170-271 (458)
213 PRK06263 sdhA succinate dehydr 98.5 2.7E-06 5.9E-11 83.9 15.0 40 1-41 1-40 (543)
214 PRK09754 phenylpropionate diox 98.5 1.1E-06 2.3E-11 83.4 11.7 100 7-153 144-243 (396)
215 PRK07573 sdhA succinate dehydr 98.5 3.2E-06 6.9E-11 84.6 15.5 36 7-42 35-70 (640)
216 PRK00711 D-amino acid dehydrog 98.5 1.4E-06 2.9E-11 83.4 12.5 33 8-40 1-33 (416)
217 PRK05249 soluble pyridine nucl 98.5 1.9E-06 4.1E-11 83.5 13.6 101 7-154 175-275 (461)
218 COG2081 Predicted flavoprotein 98.5 3.8E-07 8.1E-12 82.6 7.9 143 187-330 4-166 (408)
219 TIGR00551 nadB L-aspartate oxi 98.5 3.1E-06 6.8E-11 82.3 15.0 134 7-150 2-190 (488)
220 PRK06854 adenylylsulfate reduc 98.5 2.7E-06 6E-11 84.7 14.8 35 7-41 11-47 (608)
221 PRK06452 sdhA succinate dehydr 98.5 3E-06 6.5E-11 83.8 14.7 37 7-43 5-41 (566)
222 PRK05257 malate:quinone oxidor 98.5 2.5E-06 5.4E-11 82.6 13.8 63 81-149 183-246 (494)
223 PRK08641 sdhA succinate dehydr 98.5 4.7E-06 1E-10 82.7 16.0 37 7-43 3-39 (589)
224 PRK07818 dihydrolipoamide dehy 98.5 2.7E-06 5.8E-11 82.5 13.9 103 7-154 172-276 (466)
225 PF06039 Mqo: Malate:quinone o 98.5 3E-06 6.5E-11 78.5 13.1 67 79-151 179-246 (488)
226 COG0665 DadA Glycine/D-amino a 98.5 1.1E-06 2.4E-11 83.1 10.9 36 7-42 4-39 (387)
227 PTZ00367 squalene epoxidase; P 98.5 1.6E-06 3.6E-11 85.0 12.1 35 6-40 32-66 (567)
228 COG1233 Phytoene dehydrogenase 98.5 2.6E-07 5.6E-12 89.6 6.2 54 7-60 3-56 (487)
229 PRK05945 sdhA succinate dehydr 98.5 1.8E-06 4E-11 85.6 12.3 37 7-43 3-41 (575)
230 COG1231 Monoamine oxidase [Ami 98.5 2.2E-06 4.8E-11 79.0 11.7 43 2-44 2-44 (450)
231 COG0445 GidA Flavin-dependent 98.4 6.1E-07 1.3E-11 84.1 8.0 131 7-148 4-157 (621)
232 PRK06116 glutathione reductase 98.4 3.4E-06 7.5E-11 81.4 13.6 103 7-155 167-269 (450)
233 TIGR01812 sdhA_frdA_Gneg succi 98.4 5.3E-06 1.1E-10 82.4 15.2 35 9-43 1-35 (566)
234 TIGR01424 gluta_reduc_2 glutat 98.4 4.1E-06 8.8E-11 80.7 13.5 101 7-154 166-266 (446)
235 PRK06370 mercuric reductase; V 98.4 5.2E-06 1.1E-10 80.4 14.3 104 7-154 171-274 (463)
236 PRK06175 L-aspartate oxidase; 98.4 2.7E-06 5.9E-11 81.3 12.0 37 7-44 4-40 (433)
237 PRK13977 myosin-cross-reactive 98.4 4.2E-06 9.1E-11 80.8 13.1 40 7-46 22-65 (576)
238 PRK06115 dihydrolipoamide dehy 98.4 6.5E-06 1.4E-10 79.7 14.5 106 7-154 174-279 (466)
239 PRK09231 fumarate reductase fl 98.4 3.8E-06 8.3E-11 83.3 13.1 38 7-44 4-43 (582)
240 PRK12839 hypothetical protein; 98.4 1.5E-05 3.3E-10 78.8 17.1 44 1-44 1-45 (572)
241 PLN02815 L-aspartate oxidase 98.4 5.3E-06 1.1E-10 82.1 13.8 37 7-44 29-65 (594)
242 PRK08255 salicylyl-CoA 5-hydro 98.4 8.7E-07 1.9E-11 90.6 8.4 119 8-150 1-142 (765)
243 PRK06327 dihydrolipoamide dehy 98.4 7.6E-06 1.6E-10 79.5 14.5 106 7-155 183-288 (475)
244 PLN02507 glutathione reductase 98.4 5.7E-06 1.2E-10 80.6 13.7 101 7-154 203-303 (499)
245 PRK14694 putative mercuric red 98.4 5.4E-06 1.2E-10 80.4 13.4 99 7-154 178-276 (468)
246 PRK07846 mycothione reductase; 98.4 5.4E-06 1.2E-10 79.8 13.2 101 7-155 166-266 (451)
247 PRK06069 sdhA succinate dehydr 98.4 5.4E-06 1.2E-10 82.3 13.5 38 7-44 5-45 (577)
248 PRK14727 putative mercuric red 98.4 5.8E-06 1.3E-10 80.3 13.4 99 7-154 188-286 (479)
249 PRK07845 flavoprotein disulfid 98.4 6.4E-06 1.4E-10 79.8 13.6 100 8-154 178-277 (466)
250 PRK07208 hypothetical protein; 98.4 1.1E-06 2.4E-11 85.5 8.4 47 7-53 4-50 (479)
251 TIGR01176 fum_red_Fp fumarate 98.4 6E-06 1.3E-10 81.7 13.6 38 7-44 3-42 (580)
252 PRK07803 sdhA succinate dehydr 98.4 9E-06 2E-10 81.3 14.9 37 7-43 8-44 (626)
253 PRK12842 putative succinate de 98.4 7.5E-06 1.6E-10 81.3 14.2 38 7-44 9-46 (574)
254 TIGR01421 gluta_reduc_1 glutat 98.4 8.3E-06 1.8E-10 78.5 14.1 103 7-154 166-268 (450)
255 PRK08010 pyridine nucleotide-d 98.4 7E-06 1.5E-10 79.0 13.5 100 7-154 158-257 (441)
256 PRK12835 3-ketosteroid-delta-1 98.4 1.6E-05 3.4E-10 78.9 16.3 39 6-44 10-48 (584)
257 PRK08205 sdhA succinate dehydr 98.4 1.4E-05 3E-10 79.5 15.9 36 7-43 5-40 (583)
258 PRK09564 coenzyme A disulfide 98.4 5.4E-06 1.2E-10 80.0 12.6 100 7-153 149-248 (444)
259 PRK07843 3-ketosteroid-delta-1 98.3 2E-05 4.3E-10 77.9 16.6 44 1-44 1-44 (557)
260 KOG2614 Kynurenine 3-monooxyge 98.3 1.1E-06 2.3E-11 79.9 6.9 35 8-42 3-37 (420)
261 PRK12837 3-ketosteroid-delta-1 98.3 1.8E-05 4E-10 77.4 16.0 43 1-44 1-43 (513)
262 KOG0029 Amine oxidase [Seconda 98.3 8.1E-07 1.8E-11 85.4 6.0 39 7-45 15-53 (501)
263 COG1252 Ndh NADH dehydrogenase 98.3 1.8E-06 3.9E-11 80.0 8.0 106 186-334 3-114 (405)
264 TIGR03385 CoA_CoA_reduc CoA-di 98.3 7.4E-06 1.6E-10 78.5 12.5 99 7-153 137-235 (427)
265 TIGR03452 mycothione_red mycot 98.3 9.1E-06 2E-10 78.3 13.0 100 7-154 169-268 (452)
266 PRK08626 fumarate reductase fl 98.3 1.9E-05 4.2E-10 79.2 15.7 37 7-43 5-41 (657)
267 PRK13748 putative mercuric red 98.3 8.1E-06 1.8E-10 81.1 13.0 99 7-154 270-368 (561)
268 PRK06134 putative FAD-binding 98.3 3.1E-05 6.8E-10 76.9 16.9 39 6-44 11-49 (581)
269 PRK06467 dihydrolipoamide dehy 98.3 1.4E-05 3.1E-10 77.4 14.0 104 7-154 174-277 (471)
270 TIGR01811 sdhA_Bsu succinate d 98.3 1.7E-05 3.6E-10 79.0 14.6 33 10-42 1-33 (603)
271 PRK14989 nitrite reductase sub 98.3 6.5E-06 1.4E-10 84.6 12.1 103 7-153 145-247 (847)
272 PRK13512 coenzyme A disulfide 98.3 6.6E-06 1.4E-10 79.0 11.5 97 7-154 148-244 (438)
273 TIGR01438 TGR thioredoxin and 98.3 1.5E-05 3.3E-10 77.3 14.0 103 7-154 180-282 (484)
274 PRK06292 dihydrolipoamide dehy 98.3 1.3E-05 2.7E-10 77.8 13.5 104 7-155 169-272 (460)
275 PRK09077 L-aspartate oxidase; 98.3 1.9E-05 4E-10 77.8 14.8 38 6-44 7-44 (536)
276 PTZ00052 thioredoxin reductase 98.3 1.3E-05 2.8E-10 78.2 13.4 100 7-154 182-281 (499)
277 PRK12845 3-ketosteroid-delta-1 98.3 4.4E-05 9.6E-10 75.3 16.8 38 6-44 15-52 (564)
278 PRK07395 L-aspartate oxidase; 98.3 1E-05 2.2E-10 79.7 12.1 37 7-44 9-45 (553)
279 PTZ00306 NADH-dependent fumara 98.2 1.9E-05 4.2E-10 84.4 14.7 38 7-44 409-446 (1167)
280 PRK08071 L-aspartate oxidase; 98.2 1.6E-05 3.5E-10 77.7 13.1 37 7-44 3-39 (510)
281 PRK12844 3-ketosteroid-delta-1 98.2 4.9E-05 1.1E-09 75.1 16.5 39 6-44 5-43 (557)
282 TIGR01423 trypano_reduc trypan 98.2 1.9E-05 4E-10 76.6 13.2 102 7-154 187-291 (486)
283 TIGR01292 TRX_reduct thioredox 98.2 4.6E-06 9.9E-11 75.9 8.5 106 188-334 2-115 (300)
284 PRK11883 protoporphyrinogen ox 98.2 1.7E-06 3.6E-11 83.7 5.8 46 8-53 1-48 (451)
285 COG0446 HcaD Uncharacterized N 98.2 1.5E-05 3.2E-10 76.0 12.3 101 8-152 137-238 (415)
286 TIGR02374 nitri_red_nirB nitri 98.2 9.4E-06 2E-10 83.3 11.4 102 7-154 140-241 (785)
287 COG2907 Predicted NAD/FAD-bind 98.2 2E-06 4.3E-11 76.1 5.5 44 2-46 3-46 (447)
288 PTZ00058 glutathione reductase 98.2 2.6E-05 5.6E-10 76.6 13.4 104 7-155 237-340 (561)
289 TIGR03169 Nterm_to_SelD pyridi 98.2 3.2E-06 6.8E-11 79.3 6.8 105 188-335 1-111 (364)
290 PTZ00318 NADH dehydrogenase-li 98.2 5.2E-06 1.1E-10 79.4 8.0 107 185-334 9-128 (424)
291 PRK12843 putative FAD-binding 98.2 7.3E-05 1.6E-09 74.3 16.4 39 7-45 16-54 (578)
292 PLN02576 protoporphyrinogen ox 98.2 3.7E-06 8.1E-11 82.3 6.8 42 6-47 11-53 (496)
293 TIGR00562 proto_IX_ox protopor 98.1 3.5E-06 7.6E-11 81.7 6.2 42 7-48 2-47 (462)
294 KOG1298 Squalene monooxygenase 98.1 2.4E-05 5.2E-10 70.3 10.7 136 7-150 45-209 (509)
295 PLN02676 polyamine oxidase 98.1 4.4E-06 9.6E-11 81.0 6.7 49 6-54 25-74 (487)
296 PLN02268 probable polyamine ox 98.1 3.4E-06 7.4E-11 81.1 5.8 40 8-47 1-40 (435)
297 COG1232 HemY Protoporphyrinoge 98.1 3.5E-06 7.5E-11 79.3 5.6 50 8-57 1-52 (444)
298 TIGR02733 desat_CrtD C-3',4' d 98.1 4.3E-06 9.4E-11 81.7 6.6 50 8-57 2-51 (492)
299 PRK10262 thioredoxin reductase 98.1 4.6E-05 1E-09 70.1 12.6 106 7-154 146-251 (321)
300 TIGR02061 aprA adenosine phosp 98.1 5.4E-05 1.2E-09 75.1 13.5 33 9-41 1-37 (614)
301 PTZ00153 lipoamide dehydrogena 98.1 6.3E-05 1.4E-09 75.1 13.8 110 7-155 312-431 (659)
302 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 1.4E-05 3E-10 75.0 8.6 35 9-43 2-36 (433)
303 PRK07233 hypothetical protein; 98.1 4.2E-06 9.2E-11 80.4 5.2 39 9-47 1-39 (434)
304 COG3349 Uncharacterized conser 98.1 4.6E-06 1E-10 78.4 5.1 37 8-44 1-37 (485)
305 PRK07512 L-aspartate oxidase; 98.1 4.5E-05 9.7E-10 74.6 12.2 33 7-41 9-41 (513)
306 KOG2853 Possible oxidoreductas 98.1 4E-05 8.6E-10 67.8 10.2 35 6-40 85-123 (509)
307 TIGR02734 crtI_fam phytoene de 98.0 5.7E-06 1.2E-10 81.1 5.7 38 10-47 1-38 (502)
308 COG1053 SdhA Succinate dehydro 98.0 5.2E-05 1.1E-09 74.2 12.2 39 5-43 4-42 (562)
309 PLN02546 glutathione reductase 98.0 8E-05 1.7E-09 73.2 13.5 102 7-154 252-353 (558)
310 TIGR02730 carot_isom carotene 98.0 7.1E-06 1.5E-10 80.1 6.0 40 8-47 1-40 (493)
311 TIGR02485 CobZ_N-term precorri 98.0 5.5E-05 1.2E-09 72.6 11.8 61 80-149 122-183 (432)
312 TIGR00031 UDP-GALP_mutase UDP- 98.0 6.8E-06 1.5E-10 76.3 5.2 39 8-46 2-40 (377)
313 COG0562 Glf UDP-galactopyranos 98.0 7.6E-06 1.7E-10 71.8 4.9 41 7-47 1-41 (374)
314 PRK13800 putative oxidoreducta 98.0 0.00019 4.1E-09 75.0 16.0 35 7-41 13-47 (897)
315 PLN02568 polyamine oxidase 98.0 1.1E-05 2.3E-10 79.0 6.3 42 7-48 5-51 (539)
316 PF03486 HI0933_like: HI0933-l 98.0 4.2E-06 9.2E-11 78.7 3.3 144 188-332 2-167 (409)
317 KOG1336 Monodehydroascorbate/f 98.0 6.6E-05 1.4E-09 69.6 10.8 107 7-157 213-319 (478)
318 PRK12416 protoporphyrinogen ox 98.0 1.1E-05 2.4E-10 78.3 5.6 41 8-48 2-48 (463)
319 KOG0685 Flavin-containing amin 97.9 1.4E-05 3.1E-10 73.9 5.6 41 7-47 21-62 (498)
320 KOG2311 NAD/FAD-utilizing prot 97.9 5.2E-05 1.1E-09 70.0 8.8 33 6-38 27-59 (679)
321 KOG2404 Fumarate reductase, fl 97.9 0.00013 2.8E-09 64.2 10.3 36 9-44 11-46 (477)
322 TIGR02731 phytoene_desat phyto 97.8 2.1E-05 4.6E-10 76.0 5.2 37 9-45 1-37 (453)
323 TIGR00292 thiazole biosynthesi 97.8 0.00016 3.4E-09 63.8 9.8 34 186-219 21-54 (254)
324 PLN02529 lysine-specific histo 97.8 3.1E-05 6.8E-10 77.8 5.9 41 7-47 160-200 (738)
325 TIGR03140 AhpF alkyl hydropero 97.8 0.00027 5.8E-09 69.4 12.3 101 7-154 352-453 (515)
326 PRK12779 putative bifunctional 97.8 3.7E-05 8E-10 80.0 6.6 101 185-332 305-406 (944)
327 KOG0042 Glycerol-3-phosphate d 97.8 2.8E-05 6.1E-10 72.8 4.9 39 7-45 67-105 (680)
328 PF01134 GIDA: Glucose inhibit 97.8 1.5E-05 3.2E-10 73.7 2.7 138 188-329 1-150 (392)
329 COG2509 Uncharacterized FAD-de 97.7 0.00028 6E-09 65.2 10.6 56 81-147 173-228 (486)
330 PTZ00363 rab-GDP dissociation 97.7 3.5E-05 7.5E-10 73.4 5.0 42 7-48 4-45 (443)
331 PRK05335 tRNA (uracil-5-)-meth 97.7 4.4E-05 9.5E-10 71.4 5.1 35 8-42 3-37 (436)
332 KOG2844 Dimethylglycine dehydr 97.7 0.00021 4.6E-09 68.8 9.5 59 79-149 185-243 (856)
333 KOG2665 Predicted FAD-dependen 97.7 0.00034 7.3E-09 61.5 9.9 38 6-43 47-86 (453)
334 PRK04176 ribulose-1,5-biphosph 97.7 0.00028 6.1E-09 62.4 9.5 190 186-394 25-255 (257)
335 PLN02852 ferredoxin-NADP+ redu 97.7 6.4E-05 1.4E-09 72.3 5.5 35 185-219 25-61 (491)
336 PF13434 K_oxygenase: L-lysine 97.7 0.00055 1.2E-08 63.2 11.3 129 7-146 190-338 (341)
337 TIGR02732 zeta_caro_desat caro 97.6 6E-05 1.3E-09 73.0 5.1 37 9-45 1-37 (474)
338 PLN02328 lysine-specific histo 97.6 7.6E-05 1.6E-09 75.5 5.8 40 7-46 238-277 (808)
339 PRK06847 hypothetical protein; 97.6 0.00013 2.8E-09 68.8 6.8 144 186-334 4-166 (375)
340 PRK12770 putative glutamate sy 97.6 0.00044 9.4E-09 64.5 10.1 33 8-40 173-206 (352)
341 PRK09853 putative selenate red 97.6 0.00016 3.5E-09 74.7 7.6 35 185-219 538-572 (1019)
342 PRK06834 hypothetical protein; 97.6 0.00016 3.4E-09 70.4 7.3 145 186-333 3-158 (488)
343 PLN02487 zeta-carotene desatur 97.6 8.6E-05 1.9E-09 72.9 5.4 41 7-47 75-115 (569)
344 PRK15317 alkyl hydroperoxide r 97.6 0.0011 2.4E-08 65.1 13.2 100 7-154 351-452 (517)
345 PF07992 Pyr_redox_2: Pyridine 97.6 2.5E-05 5.3E-10 66.6 1.3 32 188-219 1-32 (201)
346 PF00732 GMC_oxred_N: GMC oxid 97.6 6.6E-05 1.4E-09 68.2 4.2 34 8-41 1-35 (296)
347 PF13738 Pyr_redox_3: Pyridine 97.6 8E-05 1.7E-09 63.5 4.5 30 190-219 1-31 (203)
348 PRK12834 putative FAD-binding 97.6 9E-05 2E-09 73.3 5.4 38 7-44 4-43 (549)
349 TIGR01316 gltA glutamate synth 97.6 0.00051 1.1E-08 66.2 10.3 103 7-153 272-389 (449)
350 TIGR02462 pyranose_ox pyranose 97.6 8.8E-05 1.9E-09 72.1 5.0 40 8-47 1-40 (544)
351 COG3573 Predicted oxidoreducta 97.6 0.0016 3.5E-08 57.8 12.2 38 7-44 5-44 (552)
352 PLN02463 lycopene beta cyclase 97.5 0.00031 6.8E-09 67.2 8.3 135 187-332 29-170 (447)
353 PLN02612 phytoene desaturase 97.5 0.00014 3.1E-09 72.0 5.8 39 7-45 93-131 (567)
354 PRK05192 tRNA uridine 5-carbox 97.5 0.00025 5.5E-09 69.4 7.2 33 187-219 5-37 (618)
355 PLN02661 Putative thiazole syn 97.5 0.0013 2.9E-08 60.0 11.1 41 179-219 85-126 (357)
356 PLN03000 amine oxidase 97.5 0.00017 3.7E-09 73.2 5.6 42 6-47 183-224 (881)
357 KOG2495 NADH-dehydrogenase (ub 97.4 0.00031 6.6E-09 64.4 6.3 102 8-154 219-334 (491)
358 PF06100 Strep_67kDa_ant: Stre 97.4 0.002 4.4E-08 60.8 11.8 39 8-46 3-45 (500)
359 KOG1276 Protoporphyrinogen oxi 97.4 0.00025 5.3E-09 65.0 5.0 42 7-48 11-54 (491)
360 PTZ00188 adrenodoxin reductase 97.4 0.00027 5.8E-09 67.3 5.5 35 185-219 38-73 (506)
361 TIGR03315 Se_ygfK putative sel 97.4 0.00039 8.4E-09 72.2 6.9 34 186-219 537-570 (1012)
362 COG3075 GlpB Anaerobic glycero 97.4 0.00025 5.4E-09 62.7 4.7 34 7-40 2-35 (421)
363 PRK12831 putative oxidoreducta 97.4 0.0028 6E-08 61.4 12.4 34 7-40 281-314 (464)
364 TIGR01789 lycopene_cycl lycope 97.4 0.00046 1E-08 64.7 6.8 134 189-331 2-138 (370)
365 PRK12778 putative bifunctional 97.4 0.00027 5.9E-09 72.6 5.8 35 185-219 430-464 (752)
366 PLN02976 amine oxidase 97.4 0.00024 5.2E-09 75.0 5.3 43 7-49 693-735 (1713)
367 KOG3855 Monooxygenase involved 97.3 0.0034 7.3E-08 57.5 11.6 33 7-39 36-72 (481)
368 PF13454 NAD_binding_9: FAD-NA 97.3 0.0028 6.1E-08 51.5 10.2 30 190-219 1-35 (156)
369 PLN02172 flavin-containing mon 97.3 0.0011 2.5E-08 63.7 8.8 35 185-219 9-43 (461)
370 PRK05868 hypothetical protein; 97.3 0.00085 1.8E-08 63.1 7.7 34 187-220 2-35 (372)
371 PRK02106 choline dehydrogenase 97.3 0.00032 6.9E-09 69.7 5.0 34 7-40 5-39 (560)
372 TIGR03143 AhpF_homolog putativ 97.3 0.0029 6.3E-08 62.7 11.6 34 7-40 143-176 (555)
373 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00053 1.1E-08 60.7 5.5 35 7-41 3-37 (439)
374 PRK11749 dihydropyrimidine deh 97.2 0.0019 4.2E-08 62.5 10.0 103 7-152 273-388 (457)
375 KOG1399 Flavin-containing mono 97.2 0.0039 8.4E-08 59.3 11.5 34 186-219 6-39 (448)
376 PRK08773 2-octaprenyl-3-methyl 97.2 0.00063 1.4E-08 64.5 6.3 34 186-219 6-39 (392)
377 PRK12775 putative trifunctiona 97.2 0.00049 1.1E-08 72.4 6.0 34 186-219 430-463 (1006)
378 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.00033 7.3E-09 66.2 4.1 143 186-331 2-162 (387)
379 PF05834 Lycopene_cycl: Lycope 97.2 0.0008 1.7E-08 63.3 6.6 133 189-332 2-143 (374)
380 COG1635 THI4 Ribulose 1,5-bisp 97.2 0.002 4.2E-08 54.0 7.9 37 183-219 27-63 (262)
381 PRK08163 salicylate hydroxylas 97.2 0.00065 1.4E-08 64.5 5.9 35 186-220 4-38 (396)
382 COG0445 GidA Flavin-dependent 97.2 0.00052 1.1E-08 65.0 5.0 144 187-331 5-158 (621)
383 PRK09126 hypothetical protein; 97.2 0.00077 1.7E-08 63.9 6.3 34 187-220 4-37 (392)
384 COG2303 BetA Choline dehydroge 97.2 0.00044 9.6E-09 68.0 4.6 39 2-40 2-40 (542)
385 PRK07236 hypothetical protein; 97.1 0.0015 3.3E-08 61.8 8.0 34 186-219 6-39 (386)
386 TIGR00136 gidA glucose-inhibit 97.1 0.0014 3.1E-08 64.2 7.7 32 188-219 2-33 (617)
387 COG2072 TrkA Predicted flavopr 97.1 0.0025 5.4E-08 61.2 9.3 34 186-219 8-42 (443)
388 KOG1346 Programmed cell death 97.1 0.0017 3.7E-08 59.3 7.4 101 7-154 347-452 (659)
389 PRK01438 murD UDP-N-acetylmura 97.1 0.001 2.2E-08 64.9 6.5 35 185-219 15-49 (480)
390 PRK08244 hypothetical protein; 97.1 0.00098 2.1E-08 65.2 6.5 34 187-220 3-36 (493)
391 TIGR01790 carotene-cycl lycope 97.1 0.0017 3.7E-08 61.4 7.9 133 189-331 2-141 (388)
392 PRK06184 hypothetical protein; 97.1 0.0015 3.3E-08 64.0 7.8 35 186-220 3-37 (502)
393 KOG2852 Possible oxidoreductas 97.1 0.0071 1.5E-07 52.8 10.4 38 6-43 9-52 (380)
394 PRK05714 2-octaprenyl-3-methyl 97.1 0.0017 3.6E-08 61.9 7.5 33 187-219 3-35 (405)
395 PRK09897 hypothetical protein; 97.1 0.0063 1.4E-07 59.5 11.4 33 187-219 2-36 (534)
396 PRK06753 hypothetical protein; 97.0 0.0015 3.2E-08 61.5 6.8 33 188-220 2-34 (373)
397 PRK06567 putative bifunctional 97.0 0.0015 3.2E-08 67.1 6.8 36 184-219 381-416 (1028)
398 PRK12814 putative NADPH-depend 97.0 0.033 7.1E-07 56.4 16.5 34 7-40 323-357 (652)
399 PRK12809 putative oxidoreducta 97.0 0.001 2.2E-08 67.0 5.8 35 185-219 309-343 (639)
400 TIGR00275 flavoprotein, HI0933 97.0 0.0017 3.7E-08 61.6 6.8 30 190-219 1-30 (400)
401 KOG0399 Glutamate synthase [Am 97.0 0.0012 2.6E-08 67.3 5.6 101 184-332 1783-1883(2142)
402 TIGR01372 soxA sarcosine oxida 97.0 0.0058 1.3E-07 64.8 11.1 96 7-153 317-413 (985)
403 TIGR02032 GG-red-SF geranylger 96.9 0.0012 2.6E-08 59.7 5.0 32 188-219 2-33 (295)
404 TIGR01317 GOGAT_sm_gam glutama 96.9 0.0012 2.6E-08 64.2 5.3 35 185-219 142-176 (485)
405 PRK07190 hypothetical protein; 96.9 0.0028 6E-08 61.7 7.7 34 187-220 6-39 (487)
406 KOG2960 Protein involved in th 96.9 0.00017 3.6E-09 59.6 -0.6 55 8-62 77-135 (328)
407 PRK07608 ubiquinone biosynthes 96.9 0.0043 9.4E-08 58.7 8.6 34 187-220 6-39 (388)
408 KOG2311 NAD/FAD-utilizing prot 96.9 0.0012 2.7E-08 61.3 4.5 33 187-219 29-61 (679)
409 TIGR01318 gltD_gamma_fam gluta 96.9 0.067 1.4E-06 51.9 16.8 34 7-40 282-316 (467)
410 TIGR01988 Ubi-OHases Ubiquinon 96.9 0.0017 3.6E-08 61.4 5.7 33 188-220 1-33 (385)
411 PRK12810 gltD glutamate syntha 96.9 0.012 2.6E-07 57.2 11.5 111 7-152 281-401 (471)
412 PRK08849 2-octaprenyl-3-methyl 96.9 0.002 4.4E-08 60.9 5.9 33 187-219 4-36 (384)
413 PRK07588 hypothetical protein; 96.9 0.0018 3.9E-08 61.4 5.6 33 188-220 2-34 (391)
414 TIGR03219 salicylate_mono sali 96.8 0.0028 6E-08 60.6 7.0 33 188-220 2-35 (414)
415 PRK07045 putative monooxygenas 96.8 0.003 6.5E-08 59.8 7.1 34 187-220 6-39 (388)
416 PF01266 DAO: FAD dependent ox 96.8 0.002 4.3E-08 60.0 5.4 32 188-219 1-32 (358)
417 PRK10157 putative oxidoreducta 96.8 0.004 8.7E-08 59.7 7.5 33 187-219 6-38 (428)
418 PRK07333 2-octaprenyl-6-methox 96.8 0.0022 4.8E-08 61.0 5.7 51 283-333 113-169 (403)
419 PRK08020 ubiF 2-octaprenyl-3-m 96.8 0.0028 6E-08 60.1 6.2 33 187-219 6-38 (391)
420 PRK01438 murD UDP-N-acetylmura 96.7 0.0064 1.4E-07 59.3 8.3 34 7-40 16-49 (480)
421 PRK12769 putative oxidoreducta 96.7 0.028 6.1E-07 57.0 13.1 33 8-40 469-502 (654)
422 TIGR01470 cysG_Nterm siroheme 96.7 0.0031 6.6E-08 53.7 5.3 36 184-219 7-42 (205)
423 TIGR01810 betA choline dehydro 96.7 0.0016 3.5E-08 64.3 3.9 32 9-40 1-33 (532)
424 KOG2755 Oxidoreductase [Genera 96.6 0.0071 1.5E-07 52.0 6.7 31 189-219 2-34 (334)
425 TIGR03862 flavo_PP4765 unchara 96.6 0.023 5E-07 52.9 10.6 62 79-153 84-145 (376)
426 PF12831 FAD_oxidored: FAD dep 96.6 0.0014 3.1E-08 62.7 2.7 31 189-219 2-32 (428)
427 PLN00093 geranylgeranyl diphos 96.6 0.014 3E-07 56.2 9.4 35 186-220 39-73 (450)
428 PRK08013 oxidoreductase; Provi 96.5 0.0049 1.1E-07 58.6 6.3 34 187-220 4-37 (400)
429 TIGR01984 UbiH 2-polyprenyl-6- 96.5 0.0051 1.1E-07 58.0 6.2 31 189-219 2-33 (382)
430 PLN02785 Protein HOTHEAD 96.5 0.0029 6.3E-08 62.8 4.6 33 7-40 55-87 (587)
431 COG0644 FixC Dehydrogenases (f 96.5 0.0048 1E-07 58.5 5.9 136 187-331 4-152 (396)
432 PRK08850 2-octaprenyl-6-methox 96.5 0.0053 1.1E-07 58.5 6.2 32 187-218 5-36 (405)
433 PRK06183 mhpA 3-(3-hydroxyphen 96.5 0.005 1.1E-07 61.0 6.1 35 186-220 10-44 (538)
434 KOG4254 Phytoene desaturase [C 96.5 0.0027 5.9E-08 58.7 3.7 40 5-44 12-51 (561)
435 PLN02697 lycopene epsilon cycl 96.4 0.0036 7.9E-08 61.1 4.7 132 187-331 109-248 (529)
436 PRK06475 salicylate hydroxylas 96.4 0.0048 1E-07 58.6 5.5 34 187-220 3-36 (400)
437 TIGR02023 BchP-ChlP geranylger 96.4 0.014 3.1E-07 55.2 8.7 31 188-218 2-32 (388)
438 PRK11728 hydroxyglutarate oxid 96.4 0.0087 1.9E-07 56.7 7.2 32 188-219 4-37 (393)
439 PRK07364 2-octaprenyl-6-methox 96.4 0.0072 1.6E-07 57.7 6.4 35 186-220 18-52 (415)
440 KOG3923 D-aspartate oxidase [A 96.4 0.0066 1.4E-07 53.2 5.3 34 7-40 3-43 (342)
441 PF01494 FAD_binding_3: FAD bi 96.3 0.00091 2E-08 62.2 -0.1 33 188-220 3-35 (356)
442 PRK06718 precorrin-2 dehydroge 96.3 0.01 2.2E-07 50.4 6.1 35 184-218 8-42 (202)
443 TIGR02028 ChlP geranylgeranyl 96.3 0.012 2.6E-07 55.8 7.3 32 188-219 2-33 (398)
444 PRK07494 2-octaprenyl-6-methox 96.3 0.0095 2.1E-07 56.3 6.6 34 187-220 8-41 (388)
445 PF04820 Trp_halogenase: Trypt 96.3 0.0068 1.5E-07 58.4 5.5 52 281-332 154-212 (454)
446 COG1251 NirB NAD(P)H-nitrite r 96.3 0.0088 1.9E-07 58.9 6.1 101 8-154 146-246 (793)
447 COG0493 GltD NADPH-dependent g 96.3 0.0052 1.1E-07 58.7 4.5 36 184-219 121-156 (457)
448 PRK12771 putative glutamate sy 96.3 0.0058 1.3E-07 60.8 5.1 36 184-219 135-170 (564)
449 PRK13984 putative oxidoreducta 96.2 0.0057 1.2E-07 61.4 4.9 35 185-219 282-316 (604)
450 PRK10015 oxidoreductase; Provi 96.2 0.0057 1.2E-07 58.6 4.6 33 187-219 6-38 (429)
451 COG0492 TrxB Thioredoxin reduc 96.2 0.06 1.3E-06 48.8 10.8 97 7-153 143-240 (305)
452 PRK06126 hypothetical protein; 96.2 0.013 2.7E-07 58.3 7.2 34 186-219 7-40 (545)
453 PRK06617 2-octaprenyl-6-methox 96.2 0.0094 2E-07 56.1 5.8 32 188-219 3-34 (374)
454 PRK05562 precorrin-2 dehydroge 96.1 0.012 2.5E-07 50.4 5.6 34 185-218 24-57 (223)
455 PF00743 FMO-like: Flavin-bind 96.1 0.0081 1.8E-07 58.9 5.3 34 186-219 1-34 (531)
456 COG3486 IucD Lysine/ornithine 96.1 0.087 1.9E-06 48.6 11.2 53 97-155 292-344 (436)
457 TIGR01989 COQ6 Ubiquinone bios 96.1 0.007 1.5E-07 58.2 4.6 32 188-219 2-37 (437)
458 KOG0405 Pyridine nucleotide-di 96.1 0.032 7E-07 50.1 8.0 105 6-156 188-292 (478)
459 PRK05329 anaerobic glycerol-3- 96.0 0.048 1E-06 51.8 9.8 92 11-147 219-316 (422)
460 COG4529 Uncharacterized protei 96.0 0.022 4.8E-07 53.6 7.2 33 187-219 2-37 (474)
461 KOG3851 Sulfide:quinone oxidor 96.0 0.012 2.7E-07 52.1 4.9 35 302-336 114-150 (446)
462 PRK06185 hypothetical protein; 95.9 0.014 2.9E-07 55.7 5.7 34 186-219 6-39 (407)
463 PRK08132 FAD-dependent oxidore 95.9 0.014 2.9E-07 58.0 5.8 34 186-219 23-56 (547)
464 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.0089 1.9E-07 48.6 3.7 32 9-40 1-32 (157)
465 PLN02927 antheraxanthin epoxid 95.9 0.025 5.4E-07 56.6 7.5 35 185-219 80-114 (668)
466 KOG1238 Glucose dehydrogenase/ 95.9 0.0088 1.9E-07 58.2 4.2 37 6-42 56-93 (623)
467 PRK05732 2-octaprenyl-6-methox 95.8 0.012 2.6E-07 55.7 5.0 32 187-218 4-38 (395)
468 PRK07538 hypothetical protein; 95.8 0.019 4.1E-07 54.9 6.0 33 188-220 2-34 (413)
469 PRK08243 4-hydroxybenzoate 3-m 95.8 0.037 8E-07 52.4 7.9 34 187-220 3-36 (392)
470 PRK08401 L-aspartate oxidase; 95.8 0.098 2.1E-06 50.8 10.9 33 187-219 2-34 (466)
471 PF13450 NAD_binding_8: NAD(P) 95.8 0.0096 2.1E-07 40.7 2.9 29 191-219 1-29 (68)
472 KOG2614 Kynurenine 3-monooxyge 95.7 0.023 5E-07 52.4 5.7 34 186-219 2-35 (420)
473 PRK11445 putative oxidoreducta 95.7 0.013 2.7E-07 54.7 4.2 31 188-219 3-33 (351)
474 PRK08255 salicylyl-CoA 5-hydro 95.6 0.013 2.8E-07 60.5 4.6 33 188-220 2-36 (765)
475 COG0569 TrkA K+ transport syst 95.6 0.017 3.8E-07 49.9 4.6 33 8-40 1-33 (225)
476 PF02737 3HCDH_N: 3-hydroxyacy 95.6 0.018 3.9E-07 48.0 4.3 32 9-40 1-32 (180)
477 PF02558 ApbA: Ketopantoate re 95.5 0.012 2.7E-07 47.4 3.1 72 189-327 1-75 (151)
478 TIGR02360 pbenz_hydroxyl 4-hyd 95.5 0.044 9.6E-07 51.9 7.2 35 186-220 2-36 (390)
479 PF13241 NAD_binding_7: Putati 95.4 0.012 2.5E-07 44.1 2.4 36 184-219 5-40 (103)
480 PRK07066 3-hydroxybutyryl-CoA 95.4 0.028 6.2E-07 51.2 5.3 40 1-40 1-40 (321)
481 PRK06481 fumarate reductase fl 95.4 0.15 3.3E-06 50.0 10.7 33 187-219 62-94 (506)
482 KOG4716 Thioredoxin reductase 95.3 0.057 1.2E-06 48.4 6.7 107 7-155 198-304 (503)
483 PRK14106 murD UDP-N-acetylmura 95.3 0.032 6.8E-07 54.0 5.7 83 183-336 2-85 (450)
484 TIGR03377 glycerol3P_GlpA glyc 95.3 0.14 3.1E-06 50.4 10.4 66 78-149 125-190 (516)
485 PRK06996 hypothetical protein; 95.3 0.0098 2.1E-07 56.5 2.1 33 187-219 12-48 (398)
486 COG1148 HdrA Heterodisulfide r 95.2 0.041 9E-07 51.7 5.8 34 186-219 124-157 (622)
487 PF00996 GDI: GDP dissociation 95.1 0.028 6.1E-07 53.3 4.6 42 7-48 4-45 (438)
488 PRK05335 tRNA (uracil-5-)-meth 95.1 0.021 4.5E-07 53.8 3.7 34 187-220 3-36 (436)
489 PF01593 Amino_oxidase: Flavin 95.0 0.024 5.1E-07 54.2 4.1 42 17-58 1-44 (450)
490 COG3380 Predicted NAD/FAD-depe 95.0 0.086 1.9E-06 45.9 6.7 33 187-219 2-34 (331)
491 COG1893 ApbA Ketopantoate redu 95.0 0.05 1.1E-06 49.5 5.7 32 188-219 2-33 (307)
492 PLN02985 squalene monooxygenas 94.8 0.031 6.7E-07 54.8 4.2 34 186-219 43-76 (514)
493 PF03721 UDPG_MGDP_dh_N: UDP-g 94.8 0.03 6.5E-07 46.8 3.6 33 8-40 1-33 (185)
494 TIGR00137 gid_trmFO tRNA:m(5)U 94.8 0.026 5.7E-07 53.4 3.4 33 188-220 2-34 (433)
495 PRK06249 2-dehydropantoate 2-r 94.8 0.092 2E-06 48.0 6.9 34 186-219 5-38 (313)
496 TIGR00551 nadB L-aspartate oxi 94.7 0.25 5.4E-06 48.3 10.2 31 188-219 4-34 (488)
497 PF13241 NAD_binding_7: Putati 94.7 0.035 7.7E-07 41.5 3.3 34 7-40 7-40 (103)
498 PRK08294 phenol 2-monooxygenas 94.6 0.098 2.1E-06 52.8 7.2 35 186-220 32-67 (634)
499 PRK06249 2-dehydropantoate 2-r 94.5 0.068 1.5E-06 48.9 5.5 34 7-40 5-38 (313)
500 PRK06719 precorrin-2 dehydroge 94.5 0.039 8.4E-07 44.8 3.4 36 183-218 10-45 (157)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3e-45 Score=351.49 Aligned_cols=362 Identities=32% Similarity=0.517 Sum_probs=225.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc---------CCcCceeeccccccccCCCCCCCCCCCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (396)
++|+|||||++||++|+.|.+.|++++++|+.+.+||+|+. ..|+.+.++++..++.+++++++.+.+.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 58999999999999999999999999999999999999974 358999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCC---CCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
++.++.+|++.+++++++..+|+++++|+++++.++ .+.|.|++.+. |.. .+..+|.||+|||.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~---g~~--~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND---GKE--ETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT---TEE--EEEEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC---CeE--EEEEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999988653 36899988653 332 5567999999999999999995
Q ss_pred --CCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH--HH
Q 016069 156 --IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY--LG 231 (396)
Q Consensus 156 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~--~~ 231 (396)
+||++.| .|.++|+.+|.+.+.+++|+|+|||+|.||+|+|.+|+..+++|++..|++.|++|+.... ..
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 9999999 9999999999999999999999999999999999999999999999999999999986421 00
Q ss_pred -----HH----HhhcCChhhHHHHHHHHHHHHh--ccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEcc
Q 016069 232 -----LV----LLRYVPCGGVDTLMVMLSRLVY--GDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLP 300 (396)
Q Consensus 232 -----~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 300 (396)
.+ +.+.+|..+...+. .+... .+...+++. |. .....+.|.+++.+...+..+.|.++.
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~---~~~l~~~~~~~~~gl~-p~------~~~~~~~~~ind~l~~~i~~G~i~vk~ 300 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLL---EKKLNKRFDHENYGLK-PK------HRFFSQHPTINDELPNRIRSGRIKVKP 300 (531)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ccccccccccccccccccccccccc---cccccccccccccccc-cc------ccccccccccccccccccccccccccc
Confidence 11 11112221111111 11110 011223331 11 112245788899999999999999988
Q ss_pred CceeEECCeEEecCCcEE-eCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCc-c--CCCceEEEeccccc--
Q 016069 301 GIESIRGNEVIFENGHSH-HFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHW-K--GKNGLYCVGLSRKG-- 374 (396)
Q Consensus 301 ~v~~~~~~~v~~~~g~~~-~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~vya~Gd~~~~-- 374 (396)
+|.++++++|+++||+++ ++|.||+||||+.+.+++.+ + . ....++.+..- ...+ . ..|++.++|-+...
T Consensus 301 ~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~-~-~-~~~~~~~~~LY-k~vfp~~~~~ptLafIG~~~~~g~ 376 (531)
T PF00743_consen 301 DIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDE-S-L-IKVDDNRVRLY-KHVFPPNLDHPTLAFIGLVQPFGS 376 (531)
T ss_dssp -EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-T-T-T-T-S-SSSSSEE-TTTEETETTSTTEEESS-SBSSS-
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c-c-ccccccccccc-cccccccccccccccccccccccc
Confidence 899999999999999886 79999999999999876544 3 1 21222222110 1112 1 35899999987532
Q ss_pred -ccCchHHHHHHHHHHhhhcC
Q 016069 375 -LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 375 -~~~a~~~a~~~a~~i~~~l~ 394 (396)
...+..||+++|+-+.+...
T Consensus 377 ~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 377 IFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp HHHHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccccccccccccccc
Confidence 23678999999998887654
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.1e-38 Score=302.67 Aligned_cols=312 Identities=23% Similarity=0.397 Sum_probs=241.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccC--------------------CcCceeeccccccccCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQLP 66 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~--------------------~~~~~~~~~~~~~~~~~ 66 (396)
.++|+|||||++||++|+.|.+.|++++++|+.+.+||+|... +|+.++++++...+.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5899999999999999999999999999999999999999642 47788889999888888
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeC
Q 016069 67 HLPFPSS-------YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139 (396)
Q Consensus 67 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d 139 (396)
.++++.. ...|+++.++.+|++++++.+++..+++++++|++++..+ +.|.|++.++.+ .. .+..||
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~--~~--~~~~~d 163 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG--FS--KDEIFD 163 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC--ce--EEEEcC
Confidence 8876542 3568899999999999999999987779999999999865 789999875421 11 356899
Q ss_pred EEEEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 140 ~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.||+|||.++.|++|.++|++.+ .|..+|+..+.....+++++|+|||+|.+|+|+|..|...+.+|++++|++
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999999889999999999999 899999999999888999999999999999999999999999999999976
Q ss_pred ceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEc
Q 016069 220 VHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVL 299 (396)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 299 (396)
... . . . .+ .+...++.+.
T Consensus 238 ~~~-----~-----~-~-------------------------~~--------------------------~~~~~~v~~~ 255 (461)
T PLN02172 238 ESD-----T-----Y-E-------------------------KL--------------------------PVPQNNLWMH 255 (461)
T ss_pred ccc-----c-----c-c-------------------------cC--------------------------cCCCCceEEC
Confidence 210 0 0 0 00 0011223332
Q ss_pred cCceeEEC-CeEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCc-cC-CCceEEEeccccc--
Q 016069 300 PGIESIRG-NEVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHW-KG-KNGLYCVGLSRKG-- 374 (396)
Q Consensus 300 ~~v~~~~~-~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~vya~Gd~~~~-- 374 (396)
..|..+.. +.|+++||+.+++|.||+||||+++++++-. . +.+..+++.+..-....+ .. .|+++++|-....
T Consensus 256 ~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-~-~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~ 333 (461)
T PLN02172 256 SEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLET-N-GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQ 333 (461)
T ss_pred CcccceecCCeEEECCCCCccCCEEEECCcCCccccccCc-c-cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccC
Confidence 22444433 3589999999999999999999999975433 2 222222222211101112 22 4899999987544
Q ss_pred ccCchHHHHHHHHHHhhhcC
Q 016069 375 LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 375 ~~~a~~~a~~~a~~i~~~l~ 394 (396)
...+..||+++|+-+.+++.
T Consensus 334 f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 334 FVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred chhHHHHHHHHHHHHcCCCC
Confidence 33778899999999887664
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=285.26 Aligned_cols=353 Identities=29% Similarity=0.467 Sum_probs=258.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
.++||+|||||++|+++|++|.+.|.. ++++|+...+||+|+.++|+++.++++..++.++..+++ +...+....++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 468999999999999999999999998 999999999999999999999999999999999999987 445677777789
Q ss_pred HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
+|+..+++++++...+.+++.|..++++++++.|+|++.++.. .++.+|+||+|||.++.|++|.++|.+.|
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f-- 157 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT------GELTADFVVVATGHLSEPYIPDFAGLDEF-- 157 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe------eeEecCEEEEeecCCCCCCCCCCCCccCC--
Confidence 9999999999999999999999999999888899999998732 33789999999999999999999999999
Q ss_pred CCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh----HHHHHHhhcCCh
Q 016069 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV----YLGLVLLRYVPC 240 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~----~~~~~~~~~~~~ 240 (396)
.|..+|+.++.+..++++|+|+|||+|.||++++..|++.|++||++.|++.+.+|.... .........++.
T Consensus 158 ----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
T COG2072 158 ----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPA 233 (443)
T ss_pred ----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCcc
Confidence 999999999999999999999999999999999999999999999999999999997652 222222222232
Q ss_pred hhHHHH------------------------HHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCe
Q 016069 241 GGVDTL------------------------MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 296 (396)
Q Consensus 241 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 296 (396)
...... .......+.......++.... .+.+ ....+....+-.+........+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~--~~~~~r~~~~~~~~~~~~~~~~ 310 (443)
T COG2072 234 GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDL-GPDY--APGDGRLVPDGDLFEAGASGDV 310 (443)
T ss_pred ceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhc-CCCC--Cccccccccccchhhhhhhccc
Confidence 211100 011111111111111111000 0000 0001112233345556666777
Q ss_pred EEccC-ceeEECCeEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 297 QVLPG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 297 ~v~~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
.+++. +..+....+...++.+++.|.++.+||+..+.-...........-..............+.|++|.++.....
T Consensus 311 ~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 311 EVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred ceeeccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 77776 6666666777777777999999999999874312222011111111122233323455678999999887654
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=8e-35 Score=265.58 Aligned_cols=284 Identities=24% Similarity=0.336 Sum_probs=210.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (396)
|||+|||||++|+++|..|++.|.+|+|+|+.+ .||.|.... .+..++.+ .......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999876 565443210 00111111 1124556888999
Q ss_pred HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCCC
Q 016069 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSAT 167 (396)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~~ 167 (396)
++.+++++++. ++ ++|++++..+ +.|.+.+.++ .+++||+||+|+| +.|+.|.+||.+.+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~--------~~~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG--------KEYTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC--------CEEEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99888888775 66 8999998865 6787887654 6799999999999 67888888887665
Q ss_pred CCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHH
Q 016069 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLM 247 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 247 (396)
.+...+.+.........+++++|||+|.+|+|++..|.+.+.+|+++.|.+....
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------ 178 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------ 178 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------------------------
Confidence 4444444444343445688999999999999999999999999999999873210
Q ss_pred HHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCC-CeEEccC--ceeEECCe----EEec---CC--
Q 016069 248 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG-QIQVLPG--IESIRGNE----VIFE---NG-- 315 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~~~--v~~~~~~~----v~~~---~g-- 315 (396)
.+...+.+++. +|+++.+ +.+++.+. +.+. +|
T Consensus 179 ------------------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~ 222 (300)
T TIGR01292 179 ------------------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEE 222 (300)
T ss_pred ------------------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCce
Confidence 00112344444 8888876 77776552 4443 23
Q ss_pred cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHHHHHHhh
Q 016069 316 HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINS 391 (396)
Q Consensus 316 ~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~i~~ 391 (396)
.++++|.+|+|+|++|+.. ++. . ....+++|++.++.. +.++.|+||++|||+.. ...|+.||+.+|.+|..
T Consensus 223 ~~i~~D~vi~a~G~~~~~~-~l~-~-~~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 223 EELKVDGVFIAIGHEPNTE-LLK-G-LLELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred EEEEccEEEEeeCCCCChH-HHH-H-hheecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 5789999999999999984 444 3 233567788888744 66899999999999862 44899999999999987
Q ss_pred hc
Q 016069 392 IL 393 (396)
Q Consensus 392 ~l 393 (396)
.+
T Consensus 299 ~~ 300 (300)
T TIGR01292 299 YL 300 (300)
T ss_pred hC
Confidence 64
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.1e-35 Score=277.95 Aligned_cols=302 Identities=19% Similarity=0.275 Sum_probs=216.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccCCcCceeeccccccc-cCCCC----CCCCCCCCCCCH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFC-QLPHL----PFPSSYPMFVSR 80 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~ 80 (396)
.||++|||+||+|..+|.++++.|.+++++|+...+|| +.+..|.|.-.+.-....+ .+... -...... -.+.
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id~ 82 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KIDF 82 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcCH
Confidence 69999999999999999999999999999999976777 4556666654432222211 11111 0000000 1233
Q ss_pred HHHHHHH-----------HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.++.+.. ....+..++++ +.+. .. ..+ .+. |....... .+++++++||||| |
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~v--i~G~-a~---f~~-~~~--v~V~~~~~------~~~~a~~iiIATG--S 145 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDV--IRGE-AR---FVD-PHT--VEVTGEDK------ETITADNIIIATG--S 145 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEE--EEEE-EE---ECC-CCE--EEEcCCCc------eEEEeCEEEEcCC--C
Confidence 3333332 23333334442 2221 11 111 133 44333222 7899999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
+|..|++++.+.. .++.+.+...... -|++++|||+|++|+|+|..+.++|.+||++.|++ .+||.+|.+
T Consensus 146 ~p~~~~~~~~~~~--------~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~e 215 (454)
T COG1249 146 RPRIPPGPGIDGA--------RILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPE 215 (454)
T ss_pred CCcCCCCCCCCCC--------eEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHH
Confidence 9999999888764 3555555444443 39999999999999999999999999999999999 899999888
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~ 307 (396)
++..+ .+.+++.+++++.+ +++++.
T Consensus 216 i~~~~-----------------------------------------------------~~~l~~~gv~i~~~~~v~~~~~ 242 (454)
T COG1249 216 ISKEL-----------------------------------------------------TKQLEKGGVKILLNTKVTAVEK 242 (454)
T ss_pred HHHHH-----------------------------------------------------HHHHHhCCeEEEccceEEEEEe
Confidence 88765 34566678888888 666654
Q ss_pred C----eEEecCCc--EEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc---C
Q 016069 308 N----EVIFENGH--SHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---G 377 (396)
Q Consensus 308 ~----~v~~~~g~--~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 377 (396)
+ .+.+++|+ ++++|.|++|+|++||+..+ ++ ..+..++++|++.+| ..+.|+.|+|||+||++.++. .
T Consensus 243 ~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe-~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~ 320 (454)
T COG1249 243 KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLE-NAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHV 320 (454)
T ss_pred cCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChh-hcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhH
Confidence 3 36777776 78999999999999999866 44 435557888999999 777788999999999987754 8
Q ss_pred chHHHHHHHHHHhh
Q 016069 378 AAADAQNIADHINS 391 (396)
Q Consensus 378 a~~~a~~~a~~i~~ 391 (396)
|.+||+.+|.+|..
T Consensus 321 A~~eg~iaa~~i~g 334 (454)
T COG1249 321 AMAEGRIAAENIAG 334 (454)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999986
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-34 Score=253.96 Aligned_cols=286 Identities=23% Similarity=0.346 Sum_probs=219.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
++||+||||||+||+||..+.+.+++++|++.....||..... ....++| ..+.-.+..++.+.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~-------------~~venyp---g~~~~~~g~~L~~~ 66 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT-------------TDVENYP---GFPGGILGPELMEQ 66 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc-------------eeecCCC---CCccCCchHHHHHH
Confidence 6899999999999999999999999944444444444322211 0111111 11223467888888
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
+.+.+..++... ....|.+++... +.|.|.+.++ ++++++||+||| ..++.|.+|+..++
T Consensus 67 ~~~~a~~~~~~~---~~~~v~~v~~~~--~~F~v~t~~~---------~~~ak~vIiAtG--~~~~~~~~~~e~e~---- 126 (305)
T COG0492 67 MKEQAEKFGVEI---VEDEVEKVELEG--GPFKVKTDKG---------TYEAKAVIIATG--AGARKLGVPGEEEF---- 126 (305)
T ss_pred HHHHHhhcCeEE---EEEEEEEEeecC--ceEEEEECCC---------eEEEeEEEECcC--CcccCCCCCcchhh----
Confidence 888888888774 337788887654 2899999874 499999999999 67777888877788
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHH
Q 016069 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTL 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
.|..+++|..++. .+++++++|||+|.+|+|.|..|...+.+||+++|++.+..
T Consensus 127 --~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra----------------------- 180 (305)
T COG0492 127 --EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA----------------------- 180 (305)
T ss_pred --cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-----------------------
Confidence 8888999999888 78899999999999999999999999999999999994221
Q ss_pred HHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcC-CCeEEccC--ceeEEC---CeEEecCC----c
Q 016069 247 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRG---NEVIFENG----H 316 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~~~--v~~~~~---~~v~~~~g----~ 316 (396)
.+...+.+++ .+|+++.+ +.++.+ +++.+++. .
T Consensus 181 -------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~ 223 (305)
T COG0492 181 -------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEK 223 (305)
T ss_pred -------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceE
Confidence 1111233443 37888877 888887 46777764 2
Q ss_pred EEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHHHHHHhhh
Q 016069 317 SHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSI 392 (396)
Q Consensus 317 ~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~i~~~ 392 (396)
.+++|-++.++|+.|++. ++. . ...++++|+++++.. +.||.|+|||+||++.. +..|..+|..+|.++.+.
T Consensus 224 ~~~~~gvf~~iG~~p~~~-~~~-~-~~~~~~~g~I~v~~~-~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~ 299 (305)
T COG0492 224 ELPVDGVFIAIGHLPNTE-LLK-G-LGVLDENGYIVVDEE-METSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERY 299 (305)
T ss_pred EEEeceEEEecCCCCchH-HHh-h-ccccCCCCcEEcCCC-cccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHH
Confidence 679999999999999994 444 3 344899999998844 88999999999999766 448999999999999887
Q ss_pred cCC
Q 016069 393 LSP 395 (396)
Q Consensus 393 l~~ 395 (396)
+.+
T Consensus 300 l~~ 302 (305)
T COG0492 300 LES 302 (305)
T ss_pred hhh
Confidence 753
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.3e-34 Score=261.02 Aligned_cols=289 Identities=18% Similarity=0.266 Sum_probs=212.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
++||+||||||+|+++|..|++.|.++++||.. ..||.+.... ..+.++. .....+..++.++
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~~ 68 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLLMER 68 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHHHHH
Confidence 689999999999999999999999999999964 5566543210 0111111 1223466788888
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
+...+..++... .. ..|++++... +.|++.... ..+.||+||+||| +.|+.|++||.+.+
T Consensus 69 ~~~~~~~~~~~~--~~-~~v~~v~~~~--~~~~v~~~~---------~~~~~d~vilAtG--~~~~~~~i~g~~~~---- 128 (321)
T PRK10262 69 MHEHATKFETEI--IF-DHINKVDLQN--RPFRLTGDS---------GEYTCDALIIATG--ASARYLGLPSEEAF---- 128 (321)
T ss_pred HHHHHHHCCCEE--Ee-eEEEEEEecC--CeEEEEecC---------CEEEECEEEECCC--CCCCCCCCCCHHHc----
Confidence 888888877653 44 3577777654 677776532 4689999999999 77888999997766
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHH
Q 016069 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTL 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
.+..++.+...+.....+++++|||+|.+|+|+|..|++.+.+|+++.|.+.. +.. ....
T Consensus 129 --~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~--~~~-~~~~--------------- 188 (321)
T PRK10262 129 --KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--RAE-KILI--------------- 188 (321)
T ss_pred --CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc--CCC-HHHH---------------
Confidence 55666666666655567899999999999999999999999999999998732 110 1000
Q ss_pred HHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC-----eEEecCC----
Q 016069 247 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----EVIFENG---- 315 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~-----~v~~~~g---- 315 (396)
..+.+.+++.+|+++.+ +++++.+ ++.++++
T Consensus 189 --------------------------------------~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~ 230 (321)
T PRK10262 189 --------------------------------------KRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSD 230 (321)
T ss_pred --------------------------------------HHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCC
Confidence 11245677889999987 8888765 3556542
Q ss_pred --cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCC----CCccCCCceEEEeccccc----ccCchHHHHHH
Q 016069 316 --HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYP----NHWKGKNGLYCVGLSRKG----LYGAAADAQNI 385 (396)
Q Consensus 316 --~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~ 385 (396)
+++++|.|++++|++||.. ++. . . +..++|++.++.. .+.|+.|+|||+|||+.. +..|+.+|..+
T Consensus 231 ~~~~i~~D~vv~a~G~~p~~~-l~~-~-~-l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~A 306 (321)
T PRK10262 231 NIESLDVAGLFVAIGHSPNTA-IFE-G-Q-LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 306 (321)
T ss_pred eEEEEECCEEEEEeCCccChh-Hhh-c-c-ccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHH
Confidence 3789999999999999995 433 2 2 2234577777641 467899999999999864 34899999999
Q ss_pred HHHHhhhcC
Q 016069 386 ADHINSILS 394 (396)
Q Consensus 386 a~~i~~~l~ 394 (396)
|..|..++.
T Consensus 307 a~~~~~~l~ 315 (321)
T PRK10262 307 ALDAERYLD 315 (321)
T ss_pred HHHHHHHHH
Confidence 999988774
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-34 Score=264.13 Aligned_cols=291 Identities=19% Similarity=0.256 Sum_probs=218.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCC-CCCCCCCCHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFP-SSYPMFVSRAQF 83 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (396)
+++|||||||++|+.+|..|.++- .+|+|||+.+..- ..+.. .-.....+..++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-----------------------~~plL~eva~g~l~~~~i 59 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-----------------------FTPLLYEVATGTLSESEI 59 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-----------------------cchhhhhhhcCCCChhhe
Confidence 579999999999999999999974 8999999987321 01100 011222344555
Q ss_pred HHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016069 84 IEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (396)
Q Consensus 84 ~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~ 162 (396)
..-++..++..+ +. +.+.+|++||.+. +. |.+.++ ..+.||+||+|+| +.+..+.+||..++
T Consensus 60 ~~p~~~~~~~~~~v~---~~~~~V~~ID~~~--k~--V~~~~~--------~~i~YD~LVvalG--s~~~~fgi~G~~E~ 122 (405)
T COG1252 60 AIPLRALLRKSGNVQ---FVQGEVTDIDRDA--KK--VTLADL--------GEISYDYLVVALG--SETNYFGIPGAAEY 122 (405)
T ss_pred eccHHHHhcccCceE---EEEEEEEEEcccC--CE--EEeCCC--------ccccccEEEEecC--CcCCcCCCCCHHHh
Confidence 555666666444 44 7888999999876 44 777764 6799999999999 89999999998877
Q ss_pred ccCCCCCcceeeccC-----CCCCCCC----CCCeEEEEcCCCCHHHHHHHHHhhcC-------------ceEEEEecCc
Q 016069 163 CSSATGTGEVIHSTQ-----YKNGKPY----GGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVIRSPV 220 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~-----~~~~~~~----~~~~i~VvG~G~~g~e~a~~l~~~g~-------------~v~~~~r~~~ 220 (396)
+-.+........... +...... .-..++|+|+|++|+|+|.+|++.-. +|+++++.|
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p- 201 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP- 201 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-
Confidence 422222221111000 0001101 12369999999999999999997632 799999999
Q ss_pred eeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEcc
Q 016069 221 HVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLP 300 (396)
Q Consensus 221 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~ 300 (396)
..||..+...+..+ .+.+++.+|++..
T Consensus 202 ~ILp~~~~~l~~~a-----------------------------------------------------~~~L~~~GV~v~l 228 (405)
T COG1252 202 RILPMFPPKLSKYA-----------------------------------------------------ERALEKLGVEVLL 228 (405)
T ss_pred hhccCCCHHHHHHH-----------------------------------------------------HHHHHHCCCEEEc
Confidence 78888777655544 4567889999999
Q ss_pred C--ceeEECCeEEecCCcE-EeCcEEEECCCCCCCcccccccC-CCCCCCCCCCcCCCCCCCccCCCceEEEecccccc-
Q 016069 301 G--IESIRGNEVIFENGHS-HHFDSIVFCTGFKRSTNVWLKQG-DDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL- 375 (396)
Q Consensus 301 ~--v~~~~~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~- 375 (396)
+ |+++++++|++++|+. +++|.+|||+|.+++. +.. . .+...++.|+++++..++.++.|+||++|||+..+
T Consensus 229 ~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~-~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~ 305 (405)
T COG1252 229 GTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASP--LLK-DLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVID 305 (405)
T ss_pred CCceEEECCCcEEEccCCeeEecCEEEEcCCCcCCh--hhh-hcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCC
Confidence 8 9999999999999985 9999999999999977 555 3 23456788999999889999999999999997543
Q ss_pred -----c---CchHHHHHHHHHHhhhcC
Q 016069 376 -----Y---GAAADAQNIADHINSILS 394 (396)
Q Consensus 376 -----~---~a~~~a~~~a~~i~~~l~ 394 (396)
. .|.+||..+|+||.+.++
T Consensus 306 ~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 306 PRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 1 799999999999999875
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.8e-34 Score=275.14 Aligned_cols=304 Identities=16% Similarity=0.169 Sum_probs=205.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCccc-ccCCcCceeecccccccc----CCCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER---------ENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPS 72 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~---------~~~~gg~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~ 72 (396)
+||++||||||+|+.+|..++++|.+|+|||+ ...+||++ +..++|.-.+.....+.. ...+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 35678865 445666443321111100 00000000
Q ss_pred CCCCCCCHHHHHHHH-----------HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEE
Q 016069 73 SYPMFVSRAQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (396)
Q Consensus 73 ~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~v 141 (396)
....-.+...+.+.. +......+++ ....++..++. ..+.|++.++.. ..++||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~----~~v~V~~~~g~~------~~~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGP----NEVEVTQLDGTK------LRYTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecC----CEEEEEeCCCcE------EEEEcCEE
Confidence 000012333333322 2233334544 33445554543 456677665421 46899999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCce
Q 016069 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (396)
Q Consensus 142 viAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 221 (396)
|+||| ++|..|.++|.+.. .++.+...... .+++++|||+|.+|+|+|..+...|.+|+++++.+ .
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 78888888876432 12222222222 27899999999999999999999999999999988 4
Q ss_pred eeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC
Q 016069 222 VLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG 301 (396)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 301 (396)
+++..+.++...+ .+.+++.+|+++.+
T Consensus 238 ~l~~~d~~~~~~l-----------------------------------------------------~~~l~~~GI~i~~~ 264 (499)
T PLN02507 238 PLRGFDDEMRAVV-----------------------------------------------------ARNLEGRGINLHPR 264 (499)
T ss_pred cCcccCHHHHHHH-----------------------------------------------------HHHHHhCCCEEEeC
Confidence 5555444433332 34566778999887
Q ss_pred --ceeEEC--Ce--EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 302 --IESIRG--NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 302 --v~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
+++++. ++ +.+.+|+++++|.|++|+|++||+..+ ++ ..+..++++|++.+| +.+.|+.|+|||+|||+..
T Consensus 265 ~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~-~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~ 342 (499)
T PLN02507 265 TNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLE-AVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNR 342 (499)
T ss_pred CEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCch-hhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCC
Confidence 777764 23 555678899999999999999999654 33 323346778988888 4556899999999999875
Q ss_pred c---cCchHHHHHHHHHHhhh
Q 016069 375 L---YGAAADAQNIADHINSI 392 (396)
Q Consensus 375 ~---~~a~~~a~~~a~~i~~~ 392 (396)
. ..|.+||+.+|+||...
T Consensus 343 ~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 343 INLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CccHHHHHHHHHHHHHHHcCC
Confidence 3 38899999999999753
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=6.4e-34 Score=274.16 Aligned_cols=306 Identities=15% Similarity=0.163 Sum_probs=206.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeecccc-ccccCCCCC-CC-CCCCCCCCHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAK-QFCQLPHLP-FP-SSYPMFVSRAQ 82 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~ 82 (396)
+|||+|||||++|+++|..|++.|.+|+|||+.+.+||+|. ..+.|...+.... .+..+...+ +. .......+..+
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFAD 84 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHH
Confidence 58999999999999999999999999999999888888764 3444432221110 010000000 00 00011123333
Q ss_pred HHHH-----------HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 83 FIEY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 83 ~~~~-----------l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
+.++ +....++.+++. +.+ .+..++ ...+.+...++.. ..++||+||+||| +.|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviATG--s~p 149 (461)
T PRK05249 85 LLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDGEV------ETLTADKIVIATG--SRP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC--CCC
Confidence 3333 333444555553 333 343333 2456666654321 4799999999999 788
Q ss_pred CCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHH
Q 016069 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (396)
..|++++.... ..++......... .+++++|||+|.+|+|+|..+++.|.+|+++.+++ .++|..+.++.
T Consensus 150 ~~p~~~~~~~~--------~v~~~~~~~~~~~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~ 219 (461)
T PRK05249 150 YRPPDVDFDHP--------RIYDSDSILSLDH-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEIS 219 (461)
T ss_pred CCCCCCCCCCC--------eEEcHHHhhchhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHHH
Confidence 88876654322 2344433333322 37999999999999999999999999999999998 55665544433
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE--C
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--G 307 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~--~ 307 (396)
..+ .+.+++.+|+++.+ +++++ +
T Consensus 220 ~~l-----------------------------------------------------~~~l~~~gI~v~~~~~v~~i~~~~ 246 (461)
T PRK05249 220 DAL-----------------------------------------------------SYHLRDSGVTIRHNEEVEKVEGGD 246 (461)
T ss_pred HHH-----------------------------------------------------HHHHHHcCCEEEECCEEEEEEEeC
Confidence 322 35566678998877 77776 3
Q ss_pred Ce--EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc---CchHH
Q 016069 308 NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAAD 381 (396)
Q Consensus 308 ~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 381 (396)
++ +.+++|+++++|.|++|+|++||+..+ ++ ..+...+++|++.+| ..+.|+.|+|||+||++..+. .|..+
T Consensus 247 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~-~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~ 324 (461)
T PRK05249 247 DGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLE-NAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQ 324 (461)
T ss_pred CeEEEEECCCCEEEeCEEEEeecCCccccCCCch-hhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHH
Confidence 33 445678899999999999999999654 33 323446778888888 455688999999999986533 78999
Q ss_pred HHHHHHHHhhh
Q 016069 382 AQNIADHINSI 392 (396)
Q Consensus 382 a~~~a~~i~~~ 392 (396)
|+.+|.+|...
T Consensus 325 g~~aa~~i~g~ 335 (461)
T PRK05249 325 GRIAAQHAVGE 335 (461)
T ss_pred HHHHHHHHcCC
Confidence 99999999853
No 11
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=6.4e-34 Score=271.81 Aligned_cols=297 Identities=18% Similarity=0.224 Sum_probs=199.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccccc----CCCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (396)
+|||+||||||+|+++|..|++.|.+|+|+|+. .+||++ +..+.|...+.....+.. ...+........-.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999986 577754 445555432111110000 00110000000011222
Q ss_pred HHHH-----------HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 82 QFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 82 ~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
++.+ .+...+++.++++ +.++.+. . ++ .. |... + ..++||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~-~--~~--~~--v~v~-~--------~~~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF-T--KD--GT--VEVN-G--------RDYTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE-c--cC--CE--EEEC-C--------EEEEeCEEEEecC--CC
Confidence 2222 2333344445554 5554431 1 11 22 4442 2 5699999999999 78
Q ss_pred CCCC-CCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 151 PFTP-DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 151 p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
|..| .+||.+.. .++..+..... .+++++|||+|.+|+|+|..|+..|.+||++.|.+ .+++..+.+
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~ 208 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM 208 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence 8888 78876431 22222222222 27899999999999999999999999999999998 555665554
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~ 307 (396)
+...+ .+.+++.+|+++.+ +++++.
T Consensus 209 ~~~~~-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i~~ 235 (450)
T TIGR01421 209 ISETI-----------------------------------------------------TEEYEKEGINVHKLSKPVKVEK 235 (450)
T ss_pred HHHHH-----------------------------------------------------HHHHHHcCCEEEcCCEEEEEEE
Confidence 44332 35567788999987 777764
Q ss_pred C-----eEEecCC-cEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc---C
Q 016069 308 N-----EVIFENG-HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---G 377 (396)
Q Consensus 308 ~-----~v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 377 (396)
+ .+.+++| +.+++|.||+|+|++||+..+ ++ .....++++|++.+|. .+.|+.|+|||+|||+.... .
T Consensus 236 ~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~~~G~i~vd~-~~~T~~p~IyAiGD~~~~~~~~~~ 313 (450)
T TIGR01421 236 TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLE-NVGIKLNEKGQIIVDE-YQNTNVPGIYALGDVVGKVELTPV 313 (450)
T ss_pred eCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCcc-ccCcEECCCCcEEeCC-CCcCCCCCEEEEEecCCCcccHHH
Confidence 2 2566677 578999999999999999654 34 3234467889998884 46788999999999987533 8
Q ss_pred chHHHHHHHHHHhh
Q 016069 378 AAADAQNIADHINS 391 (396)
Q Consensus 378 a~~~a~~~a~~i~~ 391 (396)
|.+||+.+|++|..
T Consensus 314 A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 314 AIAAGRKLSERLFN 327 (450)
T ss_pred HHHHHHHHHHHHhc
Confidence 89999999999975
No 12
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.6e-33 Score=269.86 Aligned_cols=286 Identities=19% Similarity=0.287 Sum_probs=217.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..+||+||||||+|+++|..|+++|++++|+++. +||.|.... .+.+++ +. .+....++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~~-~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---SV-PETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---CC-CCCCHHHHHH
Confidence 3689999999999999999999999999999864 788765210 001111 10 1356778999
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
++...++++++.. +++++|++++..+ +.|.|.+.++ ..+.||.||+||| +.++.|.+||...+
T Consensus 271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g--------~~i~a~~vViAtG--~~~r~~~ipG~~~~--- 333 (517)
T PRK15317 271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG--------AVLKAKTVILATG--ARWRNMNVPGEDEY--- 333 (517)
T ss_pred HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence 9999999998776 8899999998865 6777887654 5799999999999 67788888887766
Q ss_pred CCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHH
Q 016069 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDT 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 245 (396)
.+..++.+...+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+... +.
T Consensus 334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-~~-------------------- 389 (517)
T PRK15317 334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-AD-------------------- 389 (517)
T ss_pred ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-cc--------------------
Confidence 555566555445455568999999999999999999999999999999887311 00
Q ss_pred HHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcC-CCeEEccC--ceeEECC-----eEEecC---
Q 016069 246 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFEN--- 314 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~~~--v~~~~~~-----~v~~~~--- 314 (396)
..+.+.+.+ .+|+++.+ +.++..+ ++.+.+
T Consensus 390 ---------------------------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~ 430 (517)
T PRK15317 390 ---------------------------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTT 430 (517)
T ss_pred ---------------------------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCC
Confidence 001233333 58888887 7777665 245543
Q ss_pred C--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHHHHH
Q 016069 315 G--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADH 388 (396)
Q Consensus 315 g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~ 388 (396)
| +++++|.+++|+|++|++. ++. . ...++++|++.++ ....|+.|+|||+||++.. +..|+.+|..+|.+
T Consensus 431 g~~~~i~~D~v~~~~G~~p~~~-~l~-~-~v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~ 506 (517)
T PRK15317 431 GEEHHLELEGVFVQIGLVPNTE-WLK-G-TVELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALS 506 (517)
T ss_pred CcEEEEEcCEEEEeECCccCch-HHh-h-heeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHH
Confidence 3 3589999999999999994 555 3 2446778888887 4455899999999999875 45999999999999
Q ss_pred HhhhcC
Q 016069 389 INSILS 394 (396)
Q Consensus 389 i~~~l~ 394 (396)
+.+.|.
T Consensus 507 ~~~~l~ 512 (517)
T PRK15317 507 AFDYLI 512 (517)
T ss_pred HHHHHh
Confidence 987763
No 13
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-33 Score=258.47 Aligned_cols=309 Identities=31% Similarity=0.486 Sum_probs=235.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccC--------C-cCceeeccccccccCCCCCCCCCCCC-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPM- 76 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (396)
..+|+|||||+|||++|+.|.++|++++++|+.+++||+|... . |+.++++.+..++.+++++++...+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 5799999999999999999999999999999999999999865 4 99999999999999999999998555
Q ss_pred CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCC
Q 016069 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (396)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~ 156 (396)
+++..++.+||+.+++.+++...++++++|..++...+ +.|.|.+.+..+ + . ...-+|.|++|||++..|++|.+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~-~-~--~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT-Q-I--EEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc-c-e--eEEEeeEEEEcccCcCCCCCCcC
Confidence 58888999999999999999998899999998887642 699999987643 1 1 56789999999999867999999
Q ss_pred CC--ccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC-ceeeehhhhHHHHH
Q 016069 157 RG--LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP-VHVLSREMVYLGLV 233 (396)
Q Consensus 157 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~-~~~~p~~~~~~~~~ 233 (396)
+| .+.+ .|..+|+.++...+.+.+++|+|||.|.||+|++..++..+.+|++..+++ ....
T Consensus 161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~---------- 224 (448)
T KOG1399|consen 161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVE---------- 224 (448)
T ss_pred CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccc----------
Confidence 88 6688 999999999999999999999999999999999999999998888886521 0000
Q ss_pred HhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccCceeEECCeEEec
Q 016069 234 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~v~~~~~~~v~~~ 313 (396)
.......++-.+..+..+++++.++.
T Consensus 225 ------------------------------------------------------~~~~~~~~~~~~~~i~~~~e~~~~~~ 250 (448)
T KOG1399|consen 225 ------------------------------------------------------PPEILGENLWQVPSIKSFTEDGSVFE 250 (448)
T ss_pred ------------------------------------------------------ccceeecceEEccccccccCcceEEE
Confidence 00011123333333677778885555
Q ss_pred -CCcEEeCcEEEECCCCCCCcccccccCCCCC-CCCCCCcCCCCCCCcc--CCCceEEEeccc--ccccCchHHHHHHHH
Q 016069 314 -NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSM-LNDDGIPKQSYPNHWK--GKNGLYCVGLSR--KGLYGAAADAQNIAD 387 (396)
Q Consensus 314 -~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~--~~~~vya~Gd~~--~~~~~a~~~a~~~a~ 387 (396)
++....+|.+|+||||....+.+.. ..... .+++..+.-. .... -.++...+|.-. ........|++.+++
T Consensus 251 ~~~~~~~~D~ii~ctgy~y~fPfl~~-~~~~~~~~~~~~pl~k--~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~ 327 (448)
T KOG1399|consen 251 KGGPVERVDRIIFCTGYKYKFPFLET-LGLGTVRDNIVGPLYK--KVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAA 327 (448)
T ss_pred cCceeEEeeeEEEeeeeEeecceecc-CCceeeccCcccchhe--eccchhhCccccccccCeeeEeecceehhhhhhHh
Confidence 4556689999999999988865544 21212 2222122111 1000 123333333222 223477788888888
Q ss_pred HHhhhc
Q 016069 388 HINSIL 393 (396)
Q Consensus 388 ~i~~~l 393 (396)
-+.++.
T Consensus 328 v~~G~~ 333 (448)
T KOG1399|consen 328 VLEGRL 333 (448)
T ss_pred hhcCCC
Confidence 777654
No 14
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=9.9e-33 Score=267.80 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=211.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..+||+||||||||+++|..|++.|.+|+|++. .+||.+.... .+..+... ......++.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~----------~~~~~~~~-------~~~~~~~l~~ 271 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV----------GIENLISV-------PYTTGSQLAA 271 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc----------Cccccccc-------CCCCHHHHHH
Confidence 368999999999999999999999999999985 4777654210 00011110 1235677888
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
.+.+.+++++++. +.+++|++++.++ +.+.+.+.++ ..+.||++|+||| +.++.|+++|...+
T Consensus 272 ~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g--------~~i~~d~lIlAtG--a~~~~~~ipG~~~~--- 334 (515)
T TIGR03140 272 NLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG--------EVLKAKSVIVATG--ARWRKLGVPGEKEY--- 334 (515)
T ss_pred HHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC--CCcCCCCCCCHHHc---
Confidence 8888888888776 8899999998764 5677877654 5799999999999 66788888886555
Q ss_pred CCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHH
Q 016069 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDT 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 245 (396)
.+..++.+...+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+. ....
T Consensus 335 ---~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~-l~~~-------------------- 390 (515)
T TIGR03140 335 ---IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE-LKAD-------------------- 390 (515)
T ss_pred ---CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc-CChh--------------------
Confidence 3344444433333334588999999999999999999999999999988772 1100
Q ss_pred HHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcC-CCeEEccC--ceeEECC-----eEEecCC--
Q 016069 246 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFENG-- 315 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~~~--v~~~~~~-----~v~~~~g-- 315 (396)
..+.+.+++ .+|+++.+ +.+++.+ ++.+.++
T Consensus 391 ---------------------------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~ 431 (515)
T TIGR03140 391 ---------------------------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNS 431 (515)
T ss_pred ---------------------------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCC
Confidence 001233443 58888877 7777655 3666542
Q ss_pred ---cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHHHHH
Q 016069 316 ---HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADH 388 (396)
Q Consensus 316 ---~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~ 388 (396)
+++++|.|++|+|.+|++. ++. . ....+++|.+.+|. .+.|+.|+|||+|||+.. +..|+.+|..+|.+
T Consensus 432 ~~~~~i~~D~vi~a~G~~Pn~~-~l~-~-~~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~ 507 (515)
T TIGR03140 432 GEEKQLDLDGVFVQIGLVPNTE-WLK-D-AVELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALS 507 (515)
T ss_pred CcEEEEEcCEEEEEeCCcCCch-HHh-h-hcccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHH
Confidence 4689999999999999995 444 3 23456778888884 556899999999999875 34899999999999
Q ss_pred HhhhcC
Q 016069 389 INSILS 394 (396)
Q Consensus 389 i~~~l~ 394 (396)
|..++.
T Consensus 508 i~~~~~ 513 (515)
T TIGR03140 508 AFDYLI 513 (515)
T ss_pred HHHHHh
Confidence 988763
No 15
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.4e-33 Score=267.16 Aligned_cols=298 Identities=17% Similarity=0.197 Sum_probs=201.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccc-ccC---CCCCCCCCCCCCCCH-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF-CQL---PHLPFPSSYPMFVSR- 80 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~- 80 (396)
+|||+||||||+|+++|..+++.|.+|+|+|+. .+||++ +..+.|...+...... ..+ ..+..... ..-.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999985 677754 3445554322111110 000 11100000 000111
Q ss_pred ----------HHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 81 ----------AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 81 ----------~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
.++.++++..+++.+++. ...++..++. ..+.+. .++ ..++||+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~---~~g~~~~v~~----~~v~v~-~~g--------~~~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL---LEGRARLVGP----NTVEVL-QDG--------TTYTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEEEEEEecC----CEEEEe-cCC--------eEEEcCEEEEecC--Cc
Confidence 123344445555666653 3446665553 233343 222 6799999999999 78
Q ss_pred CCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHH
Q 016069 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (396)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (396)
|..|+++|.+.. ..+.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .+++..+.++
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~l~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~ 209 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFHLPT-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDM 209 (446)
T ss_pred CCCCCCCCccce----------echHHhhcccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHH
Confidence 988888876432 12122222122 37899999999999999999999999999999988 4555444333
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC-
Q 016069 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 307 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~- 307 (396)
... +.+.+++.+|+++.+ +.+++.
T Consensus 210 ~~~-----------------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 210 RAL-----------------------------------------------------LARNMEGRGIRIHPQTSLTSITKT 236 (446)
T ss_pred HHH-----------------------------------------------------HHHHHHHCCCEEEeCCEEEEEEEc
Confidence 322 234566778998887 777763
Q ss_pred -Ce--EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCchH
Q 016069 308 -NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAA 380 (396)
Q Consensus 308 -~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a~~ 380 (396)
++ +.+.+|+++++|.||+|+|++||+..+ ++ ..+..++++|++.+| +.+.|+.|+|||+|||+.. ...|.+
T Consensus 237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~-~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~ 314 (446)
T TIGR01424 237 DDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLE-AAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIM 314 (446)
T ss_pred CCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCcc-ccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHH
Confidence 23 556688899999999999999999654 33 323346778888888 4457899999999999875 338899
Q ss_pred HHHHHHHHHhh
Q 016069 381 DAQNIADHINS 391 (396)
Q Consensus 381 ~a~~~a~~i~~ 391 (396)
||+.+|+||..
T Consensus 315 ~g~~~a~~i~~ 325 (446)
T TIGR01424 315 EATCFANTEFG 325 (446)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 16
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=267.78 Aligned_cols=301 Identities=16% Similarity=0.146 Sum_probs=204.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
.+++|||||||+||+.+|+.|.+.+.+|+|||+++..- |..+ .+..........++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 35799999999999999999987788999999887321 0000 0001111123344444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCC--CCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS--PGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~--~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~ 163 (396)
.+...+...+.. +...+|++|+.+. +.+.+...+... .++ +.++.||+||+||| +.+..+.+||..+..
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~--g~~i~yD~LViAtG--s~~~~~~ipG~~e~~ 137 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVN--TFSVPYDKLVVAHG--ARPNTFNIPGVEERA 137 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCC--ceEecCCEEEECCC--cccCCCCCCCHHHcC
Confidence 455555555554 6778999999865 554442211000 001 05799999999999 788888888875431
Q ss_pred cCCCCCcceee------cc----CCCC--C-CCCCCCeEEEEcCCCCHHHHHHHHHhh--------------cCceEEEE
Q 016069 164 SSATGTGEVIH------ST----QYKN--G-KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVI 216 (396)
Q Consensus 164 ~~~~~~~~~~~------~~----~~~~--~-~~~~~~~i~VvG~G~~g~e~a~~l~~~--------------g~~v~~~~ 216 (396)
..+........ .+ .... . ...+.++++|||+|.+|+|+|..|++. +.+|++++
T Consensus 138 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~ 217 (424)
T PTZ00318 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLE 217 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEc
Confidence 01100000000 00 0000 0 011235899999999999999999863 57899999
Q ss_pred ecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCe
Q 016069 217 RSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 296 (396)
Q Consensus 217 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 296 (396)
+++ .++|..+...... ..+.+++.+|
T Consensus 218 ~~~-~ll~~~~~~~~~~-----------------------------------------------------~~~~L~~~gV 243 (424)
T PTZ00318 218 AGS-EVLGSFDQALRKY-----------------------------------------------------GQRRLRRLGV 243 (424)
T ss_pred CCC-cccccCCHHHHHH-----------------------------------------------------HHHHHHHCCC
Confidence 987 4555443333222 2466788899
Q ss_pred EEccC--ceeEECCeEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 297 QVLPG--IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 297 ~v~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
+++.+ +++++++.+.++||+++++|.+|||+|.+|+. +.. ......+++|++.+|...+.++.|+|||+|||+..
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~-~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTK-QLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhh-hcCCcccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 99977 99999999999999999999999999999985 444 32334577899999866666889999999999863
Q ss_pred --------ccCchHHHHHHHHHHhhhcC
Q 016069 375 --------LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 375 --------~~~a~~~a~~~a~~i~~~l~ 394 (396)
...|.+||..+|+||.+.+.
T Consensus 321 ~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 321 EERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 22688999999999998774
No 17
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5.3e-33 Score=266.64 Aligned_cols=297 Identities=19% Similarity=0.230 Sum_probs=200.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeeccccccc----c-CCCCCCCCCCCCCCCH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----Q-LPHLPFPSSYPMFVSR 80 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~ 80 (396)
+|||+||||||+|+++|..|+++|.+|+|||+. .+||++ +..+.|...+.....+. . ...+.+..... ....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcCH
Confidence 689999999999999999999999999999986 677754 34444432211110000 0 00000000000 1122
Q ss_pred HHHH-----------HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFI-----------EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
..+. +.+.....+.++++ ..+ +++.++. . +|.+ ++ ..++||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~~----~--~v~~-~g--------~~~~~d~lViATG--s 141 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVDA----H--TVEV-NG--------ERYTADHILIATG--G 141 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----C--EEEE-CC--------EEEEeCEEEEecC--C
Confidence 2222 22333344456553 433 4544431 2 3555 33 6799999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
.|..|+++|.+.. ++......... .+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .+++..+.+
T Consensus 142 ~p~~p~i~g~~~~----------~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~ 209 (450)
T PRK06116 142 RPSIPDIPGAEYG----------ITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDPD 209 (450)
T ss_pred CCCCCCCCCccee----------EchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCHH
Confidence 8998988876532 23322222222 37899999999999999999999999999999988 444444333
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~ 307 (396)
+... +.+.+++.+|+++.+ +.+++.
T Consensus 210 ~~~~-----------------------------------------------------l~~~L~~~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 210 IRET-----------------------------------------------------LVEEMEKKGIRLHTNAVPKAVEK 236 (450)
T ss_pred HHHH-----------------------------------------------------HHHHHHHCCcEEECCCEEEEEEE
Confidence 2222 235567788999887 888863
Q ss_pred C--e---EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCc
Q 016069 308 N--E---VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 378 (396)
Q Consensus 308 ~--~---v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a 378 (396)
+ + +.+.+|+++++|.||+|+|++|++..+ +. ..+...+++|++.+| ..+.|+.|+|||+|||+.. ...|
T Consensus 237 ~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~-~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A 314 (450)
T PRK06116 237 NADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLE-NAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVA 314 (450)
T ss_pred cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCch-hcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHH
Confidence 2 2 566788899999999999999999654 33 323446778999888 4456899999999999865 3388
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
..||+.+|++|.+.
T Consensus 315 ~~~g~~aa~~i~g~ 328 (450)
T PRK06116 315 IAAGRRLSERLFNN 328 (450)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999863
No 18
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=6.5e-33 Score=266.83 Aligned_cols=298 Identities=16% Similarity=0.170 Sum_probs=198.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-cccCCcCceeecccccc-c-----cCCCCCCCCCCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQF-C-----QLPHLPFPSSYPMFVS 79 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 79 (396)
+|||+||||||+|+++|..|++.|.+|+|+|+.. +||+ .+..+.|.-.+.-.... . .....+... ....+
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~--~~~~~ 81 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGG--PVSVD 81 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCc--cCccC
Confidence 5999999999999999999999999999999864 5554 34444443211100000 0 000111000 00123
Q ss_pred HHHHHHHH-----------HHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 80 RAQFIEYL-----------DHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 80 ~~~~~~~l-----------~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
...+.++. ....++. ++++ +.++.+. + + ... |... + .+++||+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~-~--~--~~~--v~v~-~--------~~~~~d~lViATG- 142 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARF-E--S--PNT--VRVG-G--------ETLRAKRIFINTG- 142 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEE-c--c--CCE--EEEC-c--------EEEEeCEEEEcCC-
Confidence 33333332 2223333 4443 5554431 1 1 122 4442 2 5789999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh
Q 016069 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (396)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (396)
+.|..|+++|.+.. ..++..+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+
T Consensus 143 -s~p~~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~ 211 (463)
T PRK06370 143 -ARAAIPPIPGLDEV--------GYLTNETIFSLDE-LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPRED 211 (463)
T ss_pred -CCCCCCCCCCCCcC--------ceEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccC
Confidence 78999999987653 2344444333222 37999999999999999999999999999999988 5555544
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.++... +.+.+++.+|+++.+ +.++
T Consensus 212 ~~~~~~-----------------------------------------------------l~~~l~~~GV~i~~~~~V~~i 238 (463)
T PRK06370 212 EDVAAA-----------------------------------------------------VREILEREGIDVRLNAECIRV 238 (463)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEEE
Confidence 433322 235566788999887 7788
Q ss_pred ECC--e--EEec---CCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc--
Q 016069 306 RGN--E--VIFE---NGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-- 375 (396)
Q Consensus 306 ~~~--~--v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~-- 375 (396)
+.+ + +.+. ++.++++|.||+|+|++||+..+ ++ ..+..++++|++.+|. .+.|+.|+|||+|||+...
T Consensus 239 ~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~-~~g~~~~~~G~i~vd~-~l~t~~~~IyAiGD~~~~~~~ 316 (463)
T PRK06370 239 ERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLE-AAGVETDARGYIKVDD-QLRTTNPGIYAAGDCNGRGAF 316 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCch-hhCceECCCCcEeECc-CCcCCCCCEEEeeecCCCccc
Confidence 643 2 3332 34578999999999999999644 34 3234467789888874 4568999999999998763
Q ss_pred -cCchHHHHHHHHHHhhh
Q 016069 376 -YGAAADAQNIADHINSI 392 (396)
Q Consensus 376 -~~a~~~a~~~a~~i~~~ 392 (396)
..|..||+.+|+||...
T Consensus 317 ~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 317 THTAYNDARIVAANLLDG 334 (463)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 37889999999999764
No 19
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.9e-32 Score=263.53 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=200.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc-CCcCceeecccccccc-CCCCCCCCCC---CCCCCH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ-LPHLPFPSSY---PMFVSR 80 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~ 80 (396)
.++||+|||||++|+++|..|++.|.+|+|||+. .+||+|.. .+.|.-.+.....+.. ....++.... ..-.+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 3799999999999999999999999999999986 68887753 2333222110000000 0000000000 001234
Q ss_pred HHHHHHHHHHHHh------------c-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 81 AQFIEYLDHYVSH------------F-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 81 ~~~~~~l~~~~~~------------~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
.++.++..+.... . +++ ....+++.++. ..|.|++.++.. .+++||+||+|||
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~---~~~g~v~~id~----~~~~V~~~~g~~------~~~~~d~lViATG- 149 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAIT---VLNGEARFVDE----RTLTVTLNDGGE------QTVHFDRAFIGTG- 149 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeE---EEEEEEEEecC----CEEEEEecCCCe------EEEECCEEEEeCC-
Confidence 4444443332221 1 222 33445666643 557788776422 5799999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh
Q 016069 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (396)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (396)
++|+.|++||.+.. ..+++.+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+. ..+|..+
T Consensus 150 -s~p~~p~i~G~~~~--------~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~ 217 (468)
T PRK14694 150 -ARPAEPPVPGLAET--------PYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQED 217 (468)
T ss_pred -CCCCCCCCCCCCCC--------ceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCC
Confidence 78999999987653 223333222222 23789999999999999999999999999999864 4455444
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.++... +.+.+++.+|+++.+ +.++
T Consensus 218 ~~~~~~-----------------------------------------------------l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 218 PAVGEA-----------------------------------------------------IEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEEE
Confidence 333322 245567778999887 7777
Q ss_pred ECC--eEEe-cCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCch
Q 016069 306 RGN--EVIF-ENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAA 379 (396)
Q Consensus 306 ~~~--~v~~-~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~ 379 (396)
+.+ .+.+ .++.++++|.||+|+|.+|++..+.. ...++..++|.+.+| ..+.|+.|+|||+|||+..+ ..|.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l-~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~ 322 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGRTPNTENLNL-ESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAA 322 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCc-hhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHH
Confidence 643 2322 24457999999999999999965422 113343467888887 44668899999999998763 3788
Q ss_pred HHHHHHHHHHhh
Q 016069 380 ADAQNIADHINS 391 (396)
Q Consensus 380 ~~a~~~a~~i~~ 391 (396)
.+|+.+|.+|..
T Consensus 323 ~~G~~aa~~i~~ 334 (468)
T PRK14694 323 AGGSRAAINMTG 334 (468)
T ss_pred HHHHHHHHHhcC
Confidence 999999999975
No 20
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.8e-32 Score=264.12 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=201.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc-CCcCceeeccccccccC-CCCC---CCCCCC
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQL-PHLP---FPSSYP 75 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~~~~ 75 (396)
|...+.++|++|||+|++|+++|..|+++|.+|+++|+.+.+||+|.. .+.|...+..+..+... ...+ .....+
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 89 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP 89 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence 344455799999999999999999999999999999998889998863 34554332211111110 0001 000101
Q ss_pred CCCCHHHHHHHHHHHHHh------------c-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEE
Q 016069 76 MFVSRAQFIEYLDHYVSH------------F-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (396)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~------------~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vv 142 (396)
. .+...+.........+ . ++++ ..+ .. ...+ .+.+.|...++.. .+++||+||
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~G-~a---~f~~-~~~v~v~~~~g~~------~~~~~d~lV 155 (479)
T PRK14727 90 S-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTL--LKG-YA---RFKD-GNTLVVRLHDGGE------RVLAADRCL 155 (479)
T ss_pred c-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEE--EEE-EE---EEec-CCEEEEEeCCCce------EEEEeCEEE
Confidence 1 1222332222211111 1 2221 221 12 1221 2566677655421 579999999
Q ss_pred EeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCcee
Q 016069 143 VASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHV 222 (396)
Q Consensus 143 iAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (396)
+||| +.|..|+++|.+.. ...+..+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+. ..
T Consensus 156 iATG--s~p~~p~i~G~~~~--------~~~~~~~~l~~~-~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~ 222 (479)
T PRK14727 156 IATG--STPTIPPIPGLMDT--------PYWTSTEALFSD-ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TL 222 (479)
T ss_pred EecC--CCCCCCCCCCcCcc--------ceecchHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CC
Confidence 9999 78999999887543 122222222222 23789999999999999999999999999999875 34
Q ss_pred eehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-
Q 016069 223 LSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG- 301 (396)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~- 301 (396)
++..+.++... +.+.+++.+|+++.+
T Consensus 223 l~~~d~~~~~~-----------------------------------------------------l~~~L~~~GV~i~~~~ 249 (479)
T PRK14727 223 LFREDPLLGET-----------------------------------------------------LTACFEKEGIEVLNNT 249 (479)
T ss_pred CCcchHHHHHH-----------------------------------------------------HHHHHHhCCCEEEcCc
Confidence 55544433332 235567788999877
Q ss_pred -ceeEEC--CeEEe-cCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc-
Q 016069 302 -IESIRG--NEVIF-ENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL- 375 (396)
Q Consensus 302 -v~~~~~--~~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~- 375 (396)
+++++. +.+.+ .++.++++|.||+|+|+.||+..+ ++ ..+..++++|.+.+|. .+.|+.|+|||+|||+..+
T Consensus 250 ~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~-~~g~~~~~~G~i~Vd~-~~~Ts~~~IyA~GD~~~~~~ 327 (479)
T PRK14727 250 QASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLE-AVGVTTDTSGAIVVNP-AMETSAPDIYAAGDCSDLPQ 327 (479)
T ss_pred EEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCCch-hhCceecCCCCEEECC-CeecCCCCEEEeeecCCcch
Confidence 777753 33333 234468999999999999999644 33 3233467788888884 4668999999999998753
Q ss_pred --cCchHHHHHHHHHHhhh
Q 016069 376 --YGAAADAQNIADHINSI 392 (396)
Q Consensus 376 --~~a~~~a~~~a~~i~~~ 392 (396)
..|..+|+.+|.+|.+.
T Consensus 328 ~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 328 FVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred hhhHHHHHHHHHHHHHcCC
Confidence 37889999999999763
No 21
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-32 Score=263.77 Aligned_cols=304 Identities=15% Similarity=0.161 Sum_probs=196.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeec-ccccccc---CCCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLH-LAKQFCQ---LPHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (396)
+|||+||||||+|+++|..|++.|.+|+|||+.+.+||++ +..++|...+. ....+.. ...+..... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 5999999999999999999999999999999987788854 44455543221 1110000 000000000 0112333
Q ss_pred HHHHHHH-----------HHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 82 QFIEYLD-----------HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 82 ~~~~~l~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
.+.++.. ..++..+++. + ...+..++ ...+.|...++.. .+++||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~-~g~a~~~~----~~~v~v~~~~g~~------~~~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--V-NGLGKFTG----GNTLEVTGEDGKT------TVIEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--E-EEEEEEcc----CCEEEEecCCCce------EEEEcCEEEEeCC--CC
Confidence 3333322 2234446553 3 33343332 2444555444311 5799999999999 77
Q ss_pred CCC-CCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 151 PFT-PDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 151 p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
|.. |.+++... ..+.+.+...... .+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..+.+
T Consensus 148 p~~~p~~~~~~~---------~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~ 216 (471)
T PRK06467 148 PIQLPFIPHDDP---------RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKD 216 (471)
T ss_pred CCCCCCCCCCCC---------cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHH
Confidence 763 44444221 2333333333222 36899999999999999999999999999999998 666766555
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~ 307 (396)
+...+ .+.+++. ++++.+ +++++.
T Consensus 217 ~~~~~-----------------------------------------------------~~~l~~~-v~i~~~~~v~~i~~ 242 (471)
T PRK06467 217 IVKVF-----------------------------------------------------TKRIKKQ-FNIMLETKVTAVEA 242 (471)
T ss_pred HHHHH-----------------------------------------------------HHHHhhc-eEEEcCCEEEEEEE
Confidence 44433 2344445 777776 666653
Q ss_pred --Ce--EEecCC----cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---c
Q 016069 308 --NE--VIFENG----HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---Y 376 (396)
Q Consensus 308 --~~--v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~ 376 (396)
++ +.++++ +++++|.||+|+|++||+..+.....+..++++|++.+| ..+.|+.|+|||+|||+..+ .
T Consensus 243 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~ 321 (471)
T PRK06467 243 KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAH 321 (471)
T ss_pred cCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHH
Confidence 33 334332 468999999999999999654321323446788988887 45668999999999998653 3
Q ss_pred CchHHHHHHHHHHhhh
Q 016069 377 GAAADAQNIADHINSI 392 (396)
Q Consensus 377 ~a~~~a~~~a~~i~~~ 392 (396)
.|..||+.+|.+|...
T Consensus 322 ~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 322 KGVHEGHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7899999999999763
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1e-32 Score=264.02 Aligned_cols=299 Identities=17% Similarity=0.220 Sum_probs=199.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCcccc-cCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWK-KYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~-~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
.|||+|||||++|+++|..|+++|.+|+|||+.+ .+||+|. ..+.|...+.... . ...++.......+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~------~-~~~~~~~~~~~~~~~~ 75 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA------Q-QHTDFVRAIQRKNEVV 75 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh------c-cCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999876 4688764 3333321110000 0 0000000000112222
Q ss_pred HHHHH-----HHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc
Q 016069 85 EYLDH-----YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL 159 (396)
Q Consensus 85 ~~l~~-----~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~ 159 (396)
.+++. ..+..+++ .+..++..++. +.+.|.+.++ . .++.||+||+||| ++|..|+++|.
T Consensus 76 ~~~~~~~~~~~~~~~gv~---~~~g~~~~i~~----~~~~v~~~~g----~---~~~~~d~lviATG--s~p~~p~i~G~ 139 (441)
T PRK08010 76 NFLRNKNFHNLADMPNID---VIDGQAEFINN----HSLRVHRPEG----N---LEIHGEKIFINTG--AQTVVPPIPGI 139 (441)
T ss_pred HHHHHhHHHHHhhcCCcE---EEEEEEEEecC----CEEEEEeCCC----e---EEEEeCEEEEcCC--CcCCCCCCCCc
Confidence 33321 11222444 23344555542 4556666543 1 3699999999999 78898999987
Q ss_pred cccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCC
Q 016069 160 SSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (396)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (396)
+.. .+ .++........ ..+++++|||+|.+|+|+|..+.+.|.+|+++++++ .++|..+.++...
T Consensus 140 ~~~------~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~------ 204 (441)
T PRK08010 140 TTT------PG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADN------ 204 (441)
T ss_pred cCC------CC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHH------
Confidence 654 22 33333333322 247899999999999999999999999999999987 5666554433332
Q ss_pred hhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC--eEEec-C
Q 016069 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EVIFE-N 314 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~--~v~~~-~ 314 (396)
+.+.+++.+|+++.+ +++++.+ .+.+. +
T Consensus 205 -----------------------------------------------l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~ 237 (441)
T PRK08010 205 -----------------------------------------------IATILRDQGVDIILNAHVERISHHENQVQVHSE 237 (441)
T ss_pred -----------------------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEc
Confidence 235577789999877 7777643 34332 3
Q ss_pred CcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCchHHHHHHHHHHhh
Q 016069 315 GHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINS 391 (396)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~ 391 (396)
+.++++|.|++|+|.+||+..+.....+..++++|++.+|. .+.|+.|+|||+|||+... ..|..+|+.++.+|..
T Consensus 238 ~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 238 HAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDK-YLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECC-CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcC
Confidence 34689999999999999996542203233457789888884 4678899999999998763 3788999999999975
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.6e-33 Score=266.54 Aligned_cols=300 Identities=19% Similarity=0.233 Sum_probs=200.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeeccccccccCCC---CCCCCCCCCCCCHH--
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLPH---LPFPSSYPMFVSRA-- 81 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 81 (396)
|||+||||||+|+++|..|++.|.+|+|||+.. +||+|. ..+.|...+........... +..... ....+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA-TVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccC-CCccCHHHH
Confidence 699999999999999999999999999999876 777653 34444322211111111000 000000 0011222
Q ss_pred -----HHHHHH-----HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 82 -----QFIEYL-----DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 82 -----~~~~~l-----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
++...+ ...+++.+++. +.+ ++..++ ..+|...++ . ..+.+|+||+||| +.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~~------~~~v~v~~g----~---~~~~~~~lIiATG--s~p 140 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFKD------PKTVKVDLG----R---EVRGAKRFLIATG--ARP 140 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEcc------CCEEEEcCC----e---EEEEeCEEEEcCC--CCC
Confidence 222222 23344555553 333 333222 223655442 1 4689999999999 789
Q ss_pred CCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHH
Q 016069 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (396)
..|++||.+.. ..++..+...... .+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++|..+.++.
T Consensus 141 ~~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~ 210 (463)
T TIGR02053 141 AIPPIPGLKEA--------GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEIS 210 (463)
T ss_pred CCCCCCCcccC--------ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHH
Confidence 99999987654 2344433333222 26899999999999999999999999999999998 56665544433
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC-
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN- 308 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~- 308 (396)
..+ .+.+++.+|+++.+ +++++.+
T Consensus 211 ~~l-----------------------------------------------------~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 211 AAV-----------------------------------------------------EEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred HHH-----------------------------------------------------HHHHHHcCCEEEcCcEEEEEEEcC
Confidence 322 35566778998887 7777643
Q ss_pred -e--EEec---CCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCc
Q 016069 309 -E--VIFE---NGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGA 378 (396)
Q Consensus 309 -~--v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a 378 (396)
. +.+. +++++++|.||+|+|++|+...+ ++ ......+++|++.+| ..+.|+.|+|||+|||+... ..|
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~-~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A 315 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLE-KAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVA 315 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCcc-ccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHH
Confidence 2 3333 23679999999999999999644 44 323346778988888 45678999999999998763 388
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
..||+.+|.+|...
T Consensus 316 ~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 316 AKEGVVAAENALGG 329 (463)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999864
No 24
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-32 Score=262.39 Aligned_cols=302 Identities=19% Similarity=0.236 Sum_probs=198.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccccc----CCCCCCCCCCCCCCCH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (396)
..||++||||||+|+++|..|+++|.+|+|+|+.. +||+| +..+.|...+......+. ...+..... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 36899999999999999999999999999999977 78855 555555432221111110 001111000 111244
Q ss_pred HHHHHHH-----------HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.++.++. ....++.+++. .. ..++.++. ..+.+...++ . ..++||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~-g~~~~~~~----~~~~v~~~~~----~---~~~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IR-GEAKLVDP----NTVRVMTEDG----E---QTYTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEccC----CEEEEecCCC----c---EEEEeCEEEEeCC--C
Confidence 4455543 33344455553 33 34444432 3444543221 1 5799999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCcc-eeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh
Q 016069 150 NPFTPDIRGLSSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (396)
.|..| ||.+. .+. .++..+..... ..+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|..+.
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 213 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK 213 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence 67544 34432 122 23333332222 237899999999999999999999999999999988 55665544
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
++...+ .+.+++.+|+++.+ +++++
T Consensus 214 ~~~~~l-----------------------------------------------------~~~l~~~gV~i~~~~~V~~i~ 240 (462)
T PRK06416 214 EISKLA-----------------------------------------------------ERALKKRGIKIKTGAKAKKVE 240 (462)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHcCCEEEeCCEEEEEE
Confidence 333322 35566778999887 88886
Q ss_pred CC--e--EEecCC---cEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---
Q 016069 307 GN--E--VIFENG---HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL--- 375 (396)
Q Consensus 307 ~~--~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~--- 375 (396)
.+ . +.++++ +++++|.||+|+|.+|++..+ ++ ..+...+ +|++.+| ....|+.|+|||+|||+..+
T Consensus 241 ~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~-~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~ 317 (462)
T PRK06416 241 QTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLE-ELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLA 317 (462)
T ss_pred EeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCch-hcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchH
Confidence 53 3 344566 678999999999999999654 23 2233345 7888887 44558899999999998653
Q ss_pred cCchHHHHHHHHHHhhh
Q 016069 376 YGAAADAQNIADHINSI 392 (396)
Q Consensus 376 ~~a~~~a~~~a~~i~~~ 392 (396)
..|..||+.+|++|.+.
T Consensus 318 ~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 318 HKASAEGIIAAEAIAGN 334 (462)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 37899999999999863
No 25
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=9.6e-32 Score=262.73 Aligned_cols=285 Identities=20% Similarity=0.328 Sum_probs=207.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.|||+||||||||+++|..|++.|++|+|+|+. ..||.+.... ....++. ....+..++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~-------------~i~~~pg----~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS-------------EVVNYPG----ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc-------------ccccCCC----CcCCCHHHHHHH
Confidence 589999999999999999999999999999986 5666543210 0001110 012356788888
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
+++.+++++++ ..+++|++++.+. ..+.+.+.+ ..+.+++||+||| +.|+.|+++|.+.+
T Consensus 66 l~~~~~~~gv~---~~~~~V~~i~~~~--~~~~V~~~~---------g~~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVK---FLQAEVLDVDFDG--DIKTIKTAR---------GDYKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCE---EeccEEEEEEecC--CEEEEEecC---------CEEEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 88888888876 4578899888754 556676654 4578999999999 67888999997665
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHH
Q 016069 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTL 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
.+..++.+...+...+.+++++|||+|.+|+|+|..|.+.|.+|+++.|++....+ ...
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~---~~~---------------- 184 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCA---KLI---------------- 184 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccC---HHH----------------
Confidence 45555555444444556899999999999999999999999999999998732100 000
Q ss_pred HHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe----EEe---cCCcE
Q 016069 247 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIF---ENGHS 317 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~----v~~---~~g~~ 317 (396)
....++..+|+++.+ ++++..++ +.+ .+|+.
T Consensus 185 ----------------------------------------~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~ 224 (555)
T TIGR03143 185 ----------------------------------------AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEI 224 (555)
T ss_pred ----------------------------------------HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCE
Confidence 012233458888877 77876543 222 35654
Q ss_pred E----eCcE----EEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHH
Q 016069 318 H----HFDS----IVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNI 385 (396)
Q Consensus 318 ~----~~D~----vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~ 385 (396)
. ++|. |++|+|++|++. ++. . ...++++|++.+| ..+.|+.|+|||+||++.. +..|..+|+.+
T Consensus 225 ~~~~~~~D~~~~~Vi~a~G~~Pn~~-l~~-~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~A 300 (555)
T TIGR03143 225 TEYKAPKDAGTFGVFVFVGYAPSSE-LFK-G-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIA 300 (555)
T ss_pred EEEeccccccceEEEEEeCCCCChh-HHh-h-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHH
Confidence 3 3666 999999999995 444 3 3346778988887 4566789999999999642 45899999999
Q ss_pred HHHHhhhcC
Q 016069 386 ADHINSILS 394 (396)
Q Consensus 386 a~~i~~~l~ 394 (396)
|.+|..+|.
T Consensus 301 a~~i~~~l~ 309 (555)
T TIGR03143 301 ATSAERYVK 309 (555)
T ss_pred HHHHHHHHH
Confidence 999987763
No 26
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.5e-32 Score=258.62 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=196.4
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCC-CCCHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFI 84 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 84 (396)
++|+|||||++|+++|..|++. +.+|+|||+++..+ +... ..+ ..... .....++.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~-----------------~lp--~~~~~~~~~~~~~~ 60 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC-----------------ALP--YYIGEVVEDRKYAL 60 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC-----------------Ccc--hhhcCccCCHHHcc
Confidence 4899999999999999999886 57999999987543 1100 000 00000 11122222
Q ss_pred HHH-HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016069 85 EYL-DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (396)
Q Consensus 85 ~~l-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~ 163 (396)
.+. ..+.++.++++ +.+++|++++.+. +. |.+.++.+ ++. .+++||+||+||| +.|+.|.+++..
T Consensus 61 ~~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~--v~~~~~~~-~~~--~~~~yd~lviAtG--s~~~~~~~~~~~--- 126 (438)
T PRK13512 61 AYTPEKFYDRKQITV--KTYHEVIAINDER--QT--VTVLNRKT-NEQ--FEESYDKLILSPG--ASANSLGFESDI--- 126 (438)
T ss_pred cCCHHHHHHhCCCEE--EeCCEEEEEECCC--CE--EEEEECCC-CcE--EeeecCEEEECCC--CCCCCCCCCCCC---
Confidence 221 23334557665 8899999999865 55 44433211 111 4579999999999 788777654211
Q ss_pred cCCCCCcceeeccCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhh
Q 016069 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLR 236 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-------~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~ 236 (396)
.++.....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++++ ..++..+.++...
T Consensus 127 --------~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~--- 194 (438)
T PRK13512 127 --------TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQP--- 194 (438)
T ss_pred --------eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHH---
Confidence 1222111110 11236899999999999999999999999999999988 4555444433322
Q ss_pred cCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCeEEecC
Q 016069 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFEN 314 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~v~~~~ 314 (396)
+.+.+++.+|+++.+ +++++...+.+++
T Consensus 195 --------------------------------------------------l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~ 224 (438)
T PRK13512 195 --------------------------------------------------ILDELDKREIPYRLNEEIDAINGNEVTFKS 224 (438)
T ss_pred --------------------------------------------------HHHHHHhcCCEEEECCeEEEEeCCEEEECC
Confidence 245677789999877 8889888888889
Q ss_pred CcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------------ccCchHH
Q 016069 315 GHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAAD 381 (396)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~ 381 (396)
|+.+++|.|++|+|++||++. ++ ..+...+++|++.+|. .+.|+.|+|||+|||+.. ...|.++
T Consensus 225 g~~~~~D~vl~a~G~~pn~~~-l~-~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~ 301 (438)
T PRK13512 225 GKVEHYDMIIEGVGTHPNSKF-IE-SSNIKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRA 301 (438)
T ss_pred CCEEEeCEEEECcCCCcChHH-HH-hcCcccCCCCcEEECC-CcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHH
Confidence 999999999999999999854 44 3234467788888874 456889999999999752 1147789
Q ss_pred HHHHHHHHhhh
Q 016069 382 AQNIADHINSI 392 (396)
Q Consensus 382 a~~~a~~i~~~ 392 (396)
|+.+|+||.+.
T Consensus 302 a~~~a~ni~g~ 312 (438)
T PRK13512 302 ASIVAEQIAGN 312 (438)
T ss_pred HHHHHHHhcCC
Confidence 99999999763
No 27
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.2e-32 Score=259.61 Aligned_cols=307 Identities=17% Similarity=0.193 Sum_probs=193.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-cccCCcCceeecccccccc-----CCCCCCCCCCCCCCCH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQ-----LPHLPFPSSYPMFVSR 80 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 80 (396)
+|||+||||||+|+++|..|++.|.+|+|||+. .+||+ .+..+.|.-.+.....+.. ...+... . ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~-~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-G-EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-c-CcccCH
Confidence 589999999999999999999999999999986 45654 4444444322111100000 0000000 0 011233
Q ss_pred HHHHHHHHHHHHhc--CCcceeee-ceEEEEEEEc---CCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 81 AQFIEYLDHYVSHF--NIVPSIRY-QRSVESASYD---EATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 81 ~~~~~~l~~~~~~~--~~~~~~~~-~~~v~~i~~~---~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
..+....+...++. ++.. .+ ...|+.++-. .+...+.+...++.. .+++||+||+||| +.|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~------~~~~~d~lViATG--s~p~~~ 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDGGT------ETVTFDNAIIATG--SSTRLL 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCCCe------eEEEcCEEEEeCC--CCCCCC
Confidence 33333322221111 1110 11 1122222210 012444555444321 5799999999999 677654
Q ss_pred CCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHH
Q 016069 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVL 234 (396)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~ 234 (396)
||.+. .+..+++.+.... ...+++++|||+|.+|+|+|..+++.|.+|+++.+.+ ..+|..+.++...+
T Consensus 151 --pg~~~-------~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l 219 (466)
T PRK07818 151 --PGTSL-------SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEI 219 (466)
T ss_pred --CCCCC-------CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHH
Confidence 44331 1123333322111 2247899999999999999999999999999999988 66666554443322
Q ss_pred hhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe---
Q 016069 235 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--- 309 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~--- 309 (396)
.+.+++.+|+++.+ +++++.++
T Consensus 220 -----------------------------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~ 246 (466)
T PRK07818 220 -----------------------------------------------------AKQYKKLGVKILTGTKVESIDDNGSKV 246 (466)
T ss_pred -----------------------------------------------------HHHHHHCCCEEEECCEEEEEEEeCCeE
Confidence 35567789999987 88886542
Q ss_pred -EEec--CC--cEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCchH
Q 016069 310 -VIFE--NG--HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAAA 380 (396)
Q Consensus 310 -v~~~--~g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a~~ 380 (396)
+.+. +| +++++|.||+|+|++||+..+ ++ ..+..++++|.+.+| ..+.|+.|+|||+|||+.. ...|..
T Consensus 247 ~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~ 324 (466)
T PRK07818 247 TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLE-KTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEA 324 (466)
T ss_pred EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCch-hcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHH
Confidence 3443 56 478999999999999999654 33 323345678888887 4466899999999999865 338999
Q ss_pred HHHHHHHHHhhh
Q 016069 381 DAQNIADHINSI 392 (396)
Q Consensus 381 ~a~~~a~~i~~~ 392 (396)
||+.+|.+|...
T Consensus 325 ~g~~aa~~i~g~ 336 (466)
T PRK07818 325 QGVVAAETIAGA 336 (466)
T ss_pred HHHHHHHHHcCC
Confidence 999999999863
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.1e-32 Score=266.55 Aligned_cols=302 Identities=18% Similarity=0.201 Sum_probs=200.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeecccccccc-CCCCC----CCCCCCCCCCH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-LPHLP----FPSSYPMFVSR 80 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~ 80 (396)
.|||+||||||+|+++|..|+++|.+|+|||+. .+||+|. ..++|...+.....+.. ....+ .....+ ....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCH
Confidence 589999999999999999999999999999987 7888774 34455433211111100 00001 100111 1234
Q ss_pred HHHHHHHHHHHH------------hc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 81 AQFIEYLDHYVS------------HF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 81 ~~~~~~l~~~~~------------~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
..+.++...... .. +++ .+..++..++ ...+.|.+.++.. ..++||+||+|||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviAtG- 241 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAIT---VLHGEARFKD----DQTLIVRLNDGGE------RVVAFDRCLIATG- 241 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeE---EEEEEEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC-
Confidence 444443322221 11 222 2233444333 2456666654321 5799999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh
Q 016069 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (396)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (396)
++|..|+++|.+.. ..++..+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.|.. .++..+
T Consensus 242 -s~p~~p~i~g~~~~--------~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d 309 (561)
T PRK13748 242 -ASPAVPPIPGLKET--------PYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFRED 309 (561)
T ss_pred -CCCCCCCCCCCCcc--------ceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccC
Confidence 78999999887653 12222222221 2237899999999999999999999999999999853 445544
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.++...+ .+.+++.+|+++.+ ++++
T Consensus 310 ~~~~~~l-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 310 PAIGEAV-----------------------------------------------------TAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred HHHHHHH-----------------------------------------------------HHHHHHCCCEEEcCCEEEEE
Confidence 4433322 35567788999877 7777
Q ss_pred ECC--eEEe-cCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCc
Q 016069 306 RGN--EVIF-ENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 378 (396)
Q Consensus 306 ~~~--~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a 378 (396)
+.+ .+.+ .++.++++|.||+|+|++||+..+ ++ ..+..++++|.+.+| ..+.|+.|+|||+|||+.. ...|
T Consensus 337 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~-~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A 414 (561)
T PRK13748 337 AHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALD-AAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVA 414 (561)
T ss_pred EecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCch-hcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHH
Confidence 532 3322 233479999999999999999654 33 323446778888887 4566899999999999865 3478
Q ss_pred hHHHHHHHHHHhh
Q 016069 379 AADAQNIADHINS 391 (396)
Q Consensus 379 ~~~a~~~a~~i~~ 391 (396)
..+|+.+|.+|..
T Consensus 415 ~~~g~~aa~~i~g 427 (561)
T PRK13748 415 AAAGTRAAINMTG 427 (561)
T ss_pred HHHHHHHHHHHcC
Confidence 8999999999975
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=8.5e-32 Score=260.40 Aligned_cols=306 Identities=17% Similarity=0.249 Sum_probs=197.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccCCcCceeecccccccc-C---C--CCCCC--CCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-L---P--HLPFP--SSYPM 76 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~--~~~~~ 76 (396)
..||++|||||++|+++|..+++.|.+|+|||+. .+|| +.+..+.|.-.+.-...... . . +.... .++..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 3689999999999999999999999999999986 5666 44555554433221111111 0 0 00000 00000
Q ss_pred CC-CHHHH----HHHHHHHHHhcCCcceeeeceE-EEE---EE--------E---cCCCCceEEE------EeecCCCCc
Q 016069 77 FV-SRAQF----IEYLDHYVSHFNIVPSIRYQRS-VES---AS--------Y---DEATNMWNVK------ASNLLSPGR 130 (396)
Q Consensus 77 ~~-~~~~~----~~~l~~~~~~~~~~~~~~~~~~-v~~---i~--------~---~~~~~~~~v~------~~~~~~~g~ 130 (396)
.. ...++ .+.+....+..+++. ..+.- +.+ +. . ..+.+..+|. ..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g----- 198 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG----- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-----
Confidence 00 11122 122233344455553 33332 111 00 0 0001222232 1222
Q ss_pred eeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 016069 131 VIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (396)
Q Consensus 131 ~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~ 210 (396)
..++||+||+||| ++|..|+++|.+. .+++..+..... +++++|||+|.+|+|+|..+.+.|.
T Consensus 199 ---~~i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~ 261 (561)
T PTZ00058 199 ---QVIEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGA 261 (561)
T ss_pred ---cEEECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCC
Confidence 5699999999999 8899999888642 233333333222 7899999999999999999999999
Q ss_pred ceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhh
Q 016069 211 KTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEK 290 (396)
Q Consensus 211 ~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (396)
+||++.+++ .++|..+.++...+ .+.
T Consensus 262 ~Vtli~~~~-~il~~~d~~i~~~l-----------------------------------------------------~~~ 287 (561)
T PTZ00058 262 ESYIFARGN-RLLRKFDETIINEL-----------------------------------------------------END 287 (561)
T ss_pred cEEEEEecc-cccccCCHHHHHHH-----------------------------------------------------HHH
Confidence 999999988 56666655444432 355
Q ss_pred hcCCCeEEccC--ceeEECC---eE--EecCC-cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCC
Q 016069 291 IKSGQIQVLPG--IESIRGN---EV--IFENG-HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGK 362 (396)
Q Consensus 291 ~~~~~i~v~~~--v~~~~~~---~v--~~~~g-~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (396)
+++.+|+++.+ +.+++.+ ++ .+.++ +++++|.|++|+|++|++..+.. ......+++|.+.+| ..+.|+.
T Consensus 288 L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l-~~~~~~~~~G~I~VD-e~lqTs~ 365 (561)
T PTZ00058 288 MKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL-KALNIKTPKGYIKVD-DNQRTSV 365 (561)
T ss_pred HHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCc-cccceecCCCeEEEC-cCCccCC
Confidence 67788998887 7777643 23 33344 57999999999999999965433 223344568888887 4567899
Q ss_pred CceEEEecccc----------------------------------ccc---CchHHHHHHHHHHhhh
Q 016069 363 NGLYCVGLSRK----------------------------------GLY---GAAADAQNIADHINSI 392 (396)
Q Consensus 363 ~~vya~Gd~~~----------------------------------~~~---~a~~~a~~~a~~i~~~ 392 (396)
|+|||+|||+. .+. .|.+||+.+|++|.+.
T Consensus 366 p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 366 KHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99999999987 222 7899999999999764
No 30
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.1e-32 Score=258.90 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=198.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecC--------CCCCcc-cccCCcCceeecccccc-ccC---CCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERE--------NCYASI-WKKYSYDRLRLHLAKQF-CQL---PHLPFP 71 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~-g~~v~lie~~--------~~~gg~-~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 71 (396)
.+||++|||||++|..+|..+++. |.+|+|||+. ..+||+ .+..+.|.-.+.-.... ... ..+-..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 469999999999999999999996 8999999973 467874 44555554332211111 000 000000
Q ss_pred CC-CCCCCCHHHHHHHHHHH-----------HHh-cCCcceeeeceEEEEEEEcCCCCceEEEEee-cCCCCceeeEEEE
Q 016069 72 SS-YPMFVSRAQFIEYLDHY-----------VSH-FNIVPSIRYQRSVESASYDEATNMWNVKASN-LLSPGRVIEEYYS 137 (396)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~-----------~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~-~~~~g~~~~~~~~ 137 (396)
.. ...-.+...+.++.... .+. .+++. ..+. ..-+ + .....|.... +.+ +.. ..++
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~--i~G~-a~f~--~--~~~v~V~~~~~~~~-~~~--~~~~ 151 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF--FLGW-GALE--D--KNVVLVRESADPKS-AVK--ERLQ 151 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE--EEEE-EEEc--c--CCEEEEeeccCCCC-Ccc--eEEE
Confidence 00 00012333333332221 222 13332 2222 1111 1 1333333211 100 011 5799
Q ss_pred eCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhh---cCceEE
Q 016069 138 GRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSL 214 (396)
Q Consensus 138 ~d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~---g~~v~~ 214 (396)
||+||+||| +.|..|+++|.+.. +++.+...... .+++++|||+|.+|+|+|..+..+ |.+|++
T Consensus 152 ~d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl 218 (486)
T TIGR01423 152 AEHILLATG--SWPQMLGIPGIEHC----------ISSNEAFYLDE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL 218 (486)
T ss_pred CCEEEEecC--CCCCCCCCCChhhe----------echhhhhcccc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence 999999999 78998999886532 22222222222 378999999999999999877665 899999
Q ss_pred EEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCC
Q 016069 215 VIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG 294 (396)
Q Consensus 215 ~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (396)
+.+.+ .++|..+.++...+ .+.+++.
T Consensus 219 i~~~~-~il~~~d~~~~~~l-----------------------------------------------------~~~L~~~ 244 (486)
T TIGR01423 219 CYRNN-MILRGFDSTLRKEL-----------------------------------------------------TKQLRAN 244 (486)
T ss_pred EecCC-ccccccCHHHHHHH-----------------------------------------------------HHHHHHc
Confidence 99988 56676665554433 4556778
Q ss_pred CeEEccC--ceeEECC-----eEEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceE
Q 016069 295 QIQVLPG--IESIRGN-----EVIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLY 366 (396)
Q Consensus 295 ~i~v~~~--v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vy 366 (396)
+|+++.+ +++++.+ .+.+.+|+++++|.|++|+|++|++..+ ++ ..+..++++|.+.+|. .+.|+.|+||
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~-~~gl~~~~~G~I~Vd~-~l~Ts~~~Iy 322 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD-KVGVELTKKGAIQVDE-FSRTNVPNIY 322 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCch-hhCceECCCCCEecCC-CCcCCCCCEE
Confidence 8999887 7777632 3566788899999999999999999654 23 2233467789888884 4568999999
Q ss_pred EEeccccccc---CchHHHHHHHHHHhh
Q 016069 367 CVGLSRKGLY---GAAADAQNIADHINS 391 (396)
Q Consensus 367 a~Gd~~~~~~---~a~~~a~~~a~~i~~ 391 (396)
|+|||+..+. .|..||+.+|+||..
T Consensus 323 A~GDv~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 323 AIGDVTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred EeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 9999987633 789999999999975
No 31
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=9.1e-32 Score=256.87 Aligned_cols=297 Identities=14% Similarity=0.151 Sum_probs=193.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccCCcCceeecccccccc-CC---CCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-LP---HLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 81 (396)
+||++|||||++|.++|..+ .|.+|+|||+.. +|| +.+..+.|.-.+.-...... .. .+-.... ..-.+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 38999999999999988764 599999999864 555 44555555433221111110 00 0000000 0112444
Q ss_pred HHHHHHHHHHHh-------------cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016069 82 QFIEYLDHYVSH-------------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (396)
Q Consensus 82 ~~~~~l~~~~~~-------------~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~ 148 (396)
++.++.....++ .++++ ..+ +..-+ +..+|.+.++ .+++||+||+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~a~~~------~~~~V~v~~g--------~~~~~d~lViATG-- 137 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDV--YRG-HARFI------GPKTLRTGDG--------EEITADQVVIAAG-- 137 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEE--EEE-EEEEe------cCCEEEECCC--------CEEEeCEEEEcCC--
Confidence 445444333222 22221 222 22222 1123666543 5799999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh
Q 016069 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 149 s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (396)
++|+.|+++|.+.. ...+..+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+++ .+++..+.
T Consensus 138 s~p~~p~i~g~~~~--------~~~~~~~~~~l~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~ 207 (451)
T PRK07846 138 SRPVIPPVIADSGV--------RYHTSDTIMRLPE-LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD 207 (451)
T ss_pred CCCCCCCCCCcCCc--------cEEchHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH
Confidence 88999998875432 2223333322222 37899999999999999999999999999999998 55555444
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
++...+ .+ +.+.+++++.+ +++++
T Consensus 208 ~~~~~l-----------------------------------------------------~~-l~~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 208 DISERF-----------------------------------------------------TE-LASKRWDVRLGRNVVGVS 233 (451)
T ss_pred HHHHHH-----------------------------------------------------HH-HHhcCeEEEeCCEEEEEE
Confidence 333221 12 22345888776 77776
Q ss_pred CC--e--EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCc
Q 016069 307 GN--E--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGA 378 (396)
Q Consensus 307 ~~--~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a 378 (396)
.+ + +.+.+|+++++|.|++|+|++||+..+ ++ .....++++|++.+|. .+.|+.|+|||+||++... ..|
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~-~~gl~~~~~G~i~Vd~-~~~Ts~p~IyA~GD~~~~~~l~~~A 311 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAA-AAGVDVDEDGRVVVDE-YQRTSAEGVFALGDVSSPYQLKHVA 311 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccccCch-hcCceECCCCcEeECC-CcccCCCCEEEEeecCCCccChhHH
Confidence 43 2 556688899999999999999999654 23 2233467789998884 4558999999999998753 388
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
.+||+.+|+||...
T Consensus 312 ~~~g~~~a~ni~~~ 325 (451)
T PRK07846 312 NHEARVVQHNLLHP 325 (451)
T ss_pred HHHHHHHHHHHcCC
Confidence 89999999999854
No 32
>PLN02546 glutathione reductase
Probab=100.00 E-value=3.5e-32 Score=263.30 Aligned_cols=298 Identities=15% Similarity=0.194 Sum_probs=196.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec---------CCCCCc-ccccCCcCceeecccccccc-C---CCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER---------ENCYAS-IWKKYSYDRLRLHLAKQFCQ-L---PHLPFPS 72 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~---------~~~~gg-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~ 72 (396)
+|||+|||||++|+.+|..++++|.+|+|+|+ ...+|| +.+..+.|.-.+.....+.. + ..+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 58999999999999999999999999999996 234566 33444544433221111110 0 0000000
Q ss_pred CCCCCCCHH-----------HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEE
Q 016069 73 SYPMFVSRA-----------QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (396)
Q Consensus 73 ~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~v 141 (396)
......+.. ++.+++....++.+++ +....++.++. . +|.. ++ ..+.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~---~i~G~a~~vd~----~--~V~v-~G--------~~~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVT---LIEGRGKIVDP----H--TVDV-DG--------KLYTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEeEEEEccC----C--EEEE-CC--------EEEECCEE
Confidence 000001221 2233444444555555 23334444432 2 2444 22 67999999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCce
Q 016069 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (396)
Q Consensus 142 viAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 221 (396)
|+||| ++|..|++||.+.. ++........ ..+++++|||+|.+|+|+|..|...+.+|+++.+.+ .
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~~~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHhcc-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 88999999886532 2222222222 247899999999999999999999999999999988 5
Q ss_pred eeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC
Q 016069 222 VLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG 301 (396)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 301 (396)
+++..+.++...+ .+.+++.+|+++.+
T Consensus 287 il~~~d~~~~~~l-----------------------------------------------------~~~L~~~GV~i~~~ 313 (558)
T PLN02546 287 VLRGFDEEVRDFV-----------------------------------------------------AEQMSLRGIEFHTE 313 (558)
T ss_pred cccccCHHHHHHH-----------------------------------------------------HHHHHHCCcEEEeC
Confidence 5555544433322 35567788999887
Q ss_pred --ceeEEC--C-eE--EecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccc
Q 016069 302 --IESIRG--N-EV--IFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 373 (396)
Q Consensus 302 --v~~~~~--~-~v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 373 (396)
+.+++. + .+ .+.+++.+.+|.|++|+|++||+..+ ++ ..+..++++|++.+| +.+.|+.|+|||+|||+.
T Consensus 314 ~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le-~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~ 391 (558)
T PLN02546 314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLE-EVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTD 391 (558)
T ss_pred CEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChh-hcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCC
Confidence 777753 2 23 33444445699999999999999654 34 323446778989888 455689999999999987
Q ss_pred ccc---CchHHHHHHHHHHhh
Q 016069 374 GLY---GAAADAQNIADHINS 391 (396)
Q Consensus 374 ~~~---~a~~~a~~~a~~i~~ 391 (396)
... .|..+|+.+|++|..
T Consensus 392 ~~~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 392 RINLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CcccHHHHHHHHHHHHHHHcC
Confidence 633 788999999999976
No 33
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.5e-31 Score=255.37 Aligned_cols=307 Identities=17% Similarity=0.138 Sum_probs=201.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccc-ccC---CCCCCCCC--CCCCCCH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF-CQL---PHLPFPSS--YPMFVSR 80 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~--~~~~~~~ 80 (396)
++++|||||++|+.+|..++++|.+|+|+|+.. +||++ +..+.|.-.+.....+ ..+ ..+..... .....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 489999999999999999999999999999875 66644 3444443221101000 000 00000000 0001122
Q ss_pred HHHH-----------HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFI-----------EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
..+. +.+.+.+++++++ ++...++.++...+...+.|.+.++.. .++.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~~~g~~~~~~~~~~~~~v~V~~~~g~~------~~~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVR---VIAGRGRLIDPGLGPHRVKVTTADGGE------ETLDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEEEEEEEeecccCCCEEEEEeCCCce------EEEecCEEEEcCC--C
Confidence 2222 2333444555655 344445444311112555566554411 4799999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
.|..|+.++.... ..++..+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.+
T Consensus 150 ~p~~~p~~~~~~~--------~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~ 219 (466)
T PRK07845 150 SPRILPTAEPDGE--------RILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD 219 (466)
T ss_pred CCCCCCCCCCCCc--------eEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence 7776554332211 2344444443333 37899999999999999999999999999999988 566665544
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~ 307 (396)
+...+ .+.+++.+|+++.+ +.+++.
T Consensus 220 ~~~~l-----------------------------------------------------~~~L~~~gV~i~~~~~v~~v~~ 246 (466)
T PRK07845 220 AAEVL-----------------------------------------------------EEVFARRGMTVLKRSRAESVER 246 (466)
T ss_pred HHHHH-----------------------------------------------------HHHHHHCCcEEEcCCEEEEEEE
Confidence 33322 35567789999887 777753
Q ss_pred --Ce--EEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCch
Q 016069 308 --NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGAA 379 (396)
Q Consensus 308 --~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a~ 379 (396)
++ +.+.+|+++++|.|++|+|++||+..+ ++ ..+..++++|++.+| ..+.|+.|+|||+||++.. ...|.
T Consensus 247 ~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~-~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~ 324 (466)
T PRK07845 247 TGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLE-EAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAA 324 (466)
T ss_pred eCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCch-hhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHH
Confidence 33 455688999999999999999999654 33 323446778988887 4566899999999999875 34889
Q ss_pred HHHHHHHHHHhh
Q 016069 380 ADAQNIADHINS 391 (396)
Q Consensus 380 ~~a~~~a~~i~~ 391 (396)
.||+.++.+|..
T Consensus 325 ~~g~~aa~~i~g 336 (466)
T PRK07845 325 MQGRIAMYHALG 336 (466)
T ss_pred HHHHHHHHHHcC
Confidence 999999999975
No 34
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.9e-31 Score=257.15 Aligned_cols=308 Identities=18% Similarity=0.180 Sum_probs=198.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeecccccccc-C---CCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 81 (396)
.||++||||||+|+++|..|+++|.+|+|+|+. .+||++. ..+.|.-.+......+. + ..+..... ....+..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCHH
Confidence 699999999999999999999999999999986 6788764 34444322211111110 0 00000000 0011222
Q ss_pred -------HHHHHH----HHHHHhcCCcceeeeceEEEEEEEc---CCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 82 -------QFIEYL----DHYVSHFNIVPSIRYQRSVESASYD---EATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 82 -------~~~~~l----~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
++.+.+ ....++.+++ ++...++.++.. ++++.+.|.+.++.. .+++||+||+|||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~---~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~------~~~~~d~lViATG- 151 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKID---VFHGIGRILGPSIFSPMPGTVSVETETGEN------EMIIPENLLIATG- 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeCCCCCcCCceEEEEEeCCCce------EEEEcCEEEEeCC-
Confidence 222222 2334445665 444556666543 112366677655421 5799999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh
Q 016069 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (396)
Q Consensus 148 ~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (396)
++|..++ +.... ....++..+...... .+++++|||+|++|+|+|..|.+.|.+|+++.+.+ .++|..+
T Consensus 152 -s~p~~~p--~~~~~------~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~ 220 (472)
T PRK05976 152 -SRPVELP--GLPFD------GEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTED 220 (472)
T ss_pred -CCCCCCC--CCCCC------CceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCC
Confidence 6775433 22211 111333333333222 37899999999999999999999999999999998 5666554
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.++...+ .+.+++.+|+++.+ ++++
T Consensus 221 ~~~~~~l-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 221 AELSKEV-----------------------------------------------------ARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred HHHHHHH-----------------------------------------------------HHHHHhcCCEEEeCcEEEEE
Confidence 4433322 34567778999888 7777
Q ss_pred E---CCeE---EecCCc--EEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc--
Q 016069 306 R---GNEV---IFENGH--SHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-- 375 (396)
Q Consensus 306 ~---~~~v---~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~-- 375 (396)
+ .+++ .+.+|+ ++++|.||+|+|.+|++..+.. +...+..++|.+.++ ....|+.|+|||+||++..+
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l-~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~ 325 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGL-ENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQL 325 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCc-hhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCccc
Confidence 6 3433 234663 6899999999999999865422 212333346778777 44567889999999998653
Q ss_pred -cCchHHHHHHHHHHhhh
Q 016069 376 -YGAAADAQNIADHINSI 392 (396)
Q Consensus 376 -~~a~~~a~~~a~~i~~~ 392 (396)
..|..+|+.+|++|...
T Consensus 326 ~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 326 AHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 37899999999998753
No 35
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.4e-32 Score=260.22 Aligned_cols=307 Identities=16% Similarity=0.209 Sum_probs=197.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCcc-cccCCcCceeecccccccc-C----CCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYASI-WKKYSYDRLRLHLAKQFCQ-L----PHLPFPS 72 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~--------~~gg~-~~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 72 (396)
.|||+||||||+|+++|..|+++|.+|+|||+.. .+||+ .+..++|...+.-...... + ..+....
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 36775 4555565422211100000 0 0011100
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcC----CCCceEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016069 73 SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (396)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~ 148 (396)
..-.+..++.++++..++.++... ....++.+++... ..+.++|...+. +.. ..++||+||+|||
T Consensus 85 --~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~---~~~--~~i~~d~lIIATG-- 153 (499)
T PTZ00052 85 --SSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDN---SQE--ETITAKYILIATG-- 153 (499)
T ss_pred --CCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeC---CCc--eEEECCEEEEecC--
Confidence 112456677777766665543222 2211111111100 002233544321 111 5799999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh
Q 016069 149 SNPFTPD-IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (396)
Q Consensus 149 s~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (396)
+.|..|. ++|.+.+ .+.+.+...... .+++++|||+|.+|+|+|..|...|.+||++.++ ..++..+
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d 221 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD 221 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence 7888774 7876543 223222222222 3679999999999999999999999999999874 3445554
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.++...+ .+.+++.+|+++.+ +.++
T Consensus 222 ~~~~~~l-----------------------------------------------------~~~l~~~GV~i~~~~~v~~v 248 (499)
T PTZ00052 222 RQCSEKV-----------------------------------------------------VEYMKEQGTLFLEGVVPINI 248 (499)
T ss_pred HHHHHHH-----------------------------------------------------HHHHHHcCCEEEcCCeEEEE
Confidence 4433322 45567778998887 5666
Q ss_pred ECC----eEEecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc----cc
Q 016069 306 RGN----EVIFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LY 376 (396)
Q Consensus 306 ~~~----~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~ 376 (396)
+.. .+.+.+|+++++|.|++|+|++||+..+ ++ ..+..++++|.+++++. .|+.|+|||+|||+.. ..
T Consensus 249 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~-~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~ 325 (499)
T PTZ00052 249 EKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLN-AIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTP 325 (499)
T ss_pred EEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCch-hcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHH
Confidence 532 3566788899999999999999999654 23 32334677787555533 7899999999999853 23
Q ss_pred CchHHHHHHHHHHhhh
Q 016069 377 GAAADAQNIADHINSI 392 (396)
Q Consensus 377 ~a~~~a~~~a~~i~~~ 392 (396)
.|.+||+.+|.+|...
T Consensus 326 ~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 326 VAIKAGILLARRLFKQ 341 (499)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7889999999999753
No 36
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-31 Score=254.13 Aligned_cols=303 Identities=17% Similarity=0.190 Sum_probs=191.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccccc-CC-----CCCCCCCCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ-LP-----HLPFPSSYPMFVS 79 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~ 79 (396)
+|||+||||||+|+++|..++++|.+|+|||++..+||++ +..+.|...+......+. .. .+-.... . -..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~-~-~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK-P-TLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc-C-ccC
Confidence 5899999999999999999999999999999877788854 444444332211111110 00 0000000 0 112
Q ss_pred HHHHHHHH-----------HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016069 80 RAQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (396)
Q Consensus 80 ~~~~~~~l-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~ 148 (396)
...+.+.. ....+..+++. ..+. . .+ .+ ...+.|.+.++.. .+++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~--~~-~~~v~v~~~~g~~------~~~~~d~lVIATG-- 145 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RL--DG-VGKVVVKAEDGSE------TQLEAKDIVIATG-- 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EE--cc-CCEEEEEcCCCce------EEEEeCEEEEeCC--
Confidence 22222211 12222233432 3222 1 22 21 2445555544321 4799999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh
Q 016069 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 149 s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (396)
++|. .+||.... ....+++........ .+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+.
T Consensus 146 s~p~--~ipg~~~~------~~~~~~~~~~~~~~~-~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~ 215 (466)
T PRK06115 146 SEPT--PLPGVTID------NQRIIDSTGALSLPE-VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT 215 (466)
T ss_pred CCCC--CCCCCCCC------CCeEECHHHHhCCcc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH
Confidence 6664 34554321 112333333332222 37999999999999999999999999999999988 56665444
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
+.... +.+.+++.+|+++.+ +.+++
T Consensus 216 ~~~~~-----------------------------------------------------l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 216 ETAKT-----------------------------------------------------LQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred HHHHH-----------------------------------------------------HHHHHHhcCCEEEECcEEEEEE
Confidence 33332 235567778999887 77886
Q ss_pred CC--eE--Eec---C--CcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc
Q 016069 307 GN--EV--IFE---N--GHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY 376 (396)
Q Consensus 307 ~~--~v--~~~---~--g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~ 376 (396)
.+ ++ .+. + ++++++|.|++|+|++||+..+ ++ ......+++|.+ ++ ..+.|+.|+|||+|||+..+.
T Consensus 243 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~-~~g~~~~~~G~~-vd-~~~~Ts~~~IyA~GD~~~~~~ 319 (466)
T PRK06115 243 AGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLE-TVGLETDKRGML-AN-DHHRTSVPGVWVIGDVTSGPM 319 (466)
T ss_pred EcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcc-cccceeCCCCEE-EC-CCeecCCCCEEEeeecCCCcc
Confidence 43 33 232 2 3578999999999999999644 23 212234566754 44 467799999999999987643
Q ss_pred ---CchHHHHHHHHHHhhh
Q 016069 377 ---GAAADAQNIADHINSI 392 (396)
Q Consensus 377 ---~a~~~a~~~a~~i~~~ 392 (396)
.|.+||+.+|+||...
T Consensus 320 la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 320 LAHKAEDEAVACIERIAGK 338 (466)
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 8889999999999764
No 37
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-31 Score=229.69 Aligned_cols=309 Identities=17% Similarity=0.212 Sum_probs=214.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeecccccccc----CCCCCCCCC-----
Q 016069 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQ----LPHLPFPSS----- 73 (396)
Q Consensus 4 ~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~----- 73 (396)
....+|.++||||.+|+++|++.+.+|.++.|+|..-.+||+. +..+.|.-.+.-...+.. -..+-++.+
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 3447999999999999999999999999999999887888854 344444433221111111 111111111
Q ss_pred -CCC-CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEc---CCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016069 74 -YPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYD---EATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (396)
Q Consensus 74 -~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~ 148 (396)
|.. ...++.....|....++. ..+..|.-++-. -..+...|...++.. ..+++++++||+|
T Consensus 97 dW~~ik~krdayi~RLngIY~~~------L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~------~~Ytak~iLIAtG-- 162 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRN------LAKAAVKLIEGRARFVSPGEVEVEVNDGTK------IVYTAKHILIATG-- 162 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhh------ccccceeEEeeeEEEcCCCceEEEecCCee------EEEecceEEEEeC--
Confidence 111 112223333333322221 122222222110 012444565555421 5689999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh
Q 016069 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 149 s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (396)
.+|.+|.+||.+. .+.+..+.+.++. ++|++|||+|++|+|+|..++.+|.+++++.|.. .+|..+|.
T Consensus 163 g~p~~PnIpG~E~----------gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~ 230 (478)
T KOG0405|consen 163 GRPIIPNIPGAEL----------GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE 230 (478)
T ss_pred CccCCCCCCchhh----------ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH
Confidence 8999999999774 4777778887776 9999999999999999999999999999999999 67777766
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
.++..+ .+.++..+|+++++ ++++.
T Consensus 231 ~i~~~v-----------------------------------------------------~~~~~~~ginvh~~s~~~~v~ 257 (478)
T KOG0405|consen 231 MISDLV-----------------------------------------------------TEHLEGRGINVHKNSSVTKVI 257 (478)
T ss_pred HHHHHH-----------------------------------------------------HHHhhhcceeecccccceeee
Confidence 555543 46677788999987 66654
Q ss_pred CC-----eEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCc
Q 016069 307 GN-----EVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 378 (396)
Q Consensus 307 ~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a 378 (396)
.. .++.+.|....+|.++||+|+.|++..+.....+..++.+|.+.+| +++.|+.|+||++||.++. ...|
T Consensus 258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVA 336 (478)
T KOG0405|consen 258 KTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVA 336 (478)
T ss_pred ecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHH
Confidence 32 2555667666799999999999999777331445568889999887 7888999999999999876 3388
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
...|+.+++.+-+.
T Consensus 337 iaagr~la~rlF~~ 350 (478)
T KOG0405|consen 337 IAAGRKLANRLFGG 350 (478)
T ss_pred HhhhhhHHHHhhcC
Confidence 88888888877553
No 38
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=4.3e-31 Score=253.72 Aligned_cols=303 Identities=16% Similarity=0.142 Sum_probs=195.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--------CCCccc-ccCCcCceeeccccccccC----CCCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQL----PHLPFPSS 73 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~--------~~gg~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 73 (396)
+||++|||||++|+.+|..+++.|.+|++||+.. .+||++ +..++|.-.+......... ..+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 477754 4556664433221111110 00000000
Q ss_pred CCCCCCHHHHHHHHHH-----------HHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEE
Q 016069 74 YPMFVSRAQFIEYLDH-----------YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (396)
Q Consensus 74 ~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vv 142 (396)
.....+...+.++..+ ..+..+++. +.....-++ .....|...++.. ..++||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g~~------~~~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKGKE------KIYSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCCCc------eEEEeCEEE
Confidence 0001223333332222 233334442 222222222 1333343323211 579999999
Q ss_pred EeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCcee
Q 016069 143 VASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHV 222 (396)
Q Consensus 143 iAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (396)
+||| ++|+.|++||.+.+ .+++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|. .+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc
Confidence 9999 78999999887543 223322222222 3678999999999999999999999999999874 45
Q ss_pred eehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-
Q 016069 223 LSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG- 301 (396)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~- 301 (396)
+|..+.++...+ .+.+++.+|+++.+
T Consensus 215 l~~~d~~~~~~l-----------------------------------------------------~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 215 LRGFDQDCANKV-----------------------------------------------------GEHMEEHGVKFKRQF 241 (484)
T ss_pred ccccCHHHHHHH-----------------------------------------------------HHHHHHcCCEEEeCc
Confidence 666655544433 35567778999887
Q ss_pred -ceeEECC--e--EEecCC---cEEeCcEEEECCCCCCCccccc-ccCCCCCCCC-CCCcCCCCCCCccCCCceEEEecc
Q 016069 302 -IESIRGN--E--VIFENG---HSHHFDSIVFCTGFKRSTNVWL-KQGDDSMLND-DGIPKQSYPNHWKGKNGLYCVGLS 371 (396)
Q Consensus 302 -v~~~~~~--~--v~~~~g---~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~-~g~~~~~~~~~~~~~~~vya~Gd~ 371 (396)
+.+++.. . +.+.++ +++++|.|++|+|++||+..+. + ..+..+++ +|.+.+| ..+.|+.|+|||+|||
T Consensus 242 ~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~-~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv 319 (484)
T TIGR01438 242 VPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE-NVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDI 319 (484)
T ss_pred eEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcc-cccceecCcCCeEecC-CCcccCCCCEEEEEEe
Confidence 5666532 2 455565 3789999999999999996542 3 32223443 5888887 4567899999999999
Q ss_pred ccc----ccCchHHHHHHHHHHhh
Q 016069 372 RKG----LYGAAADAQNIADHINS 391 (396)
Q Consensus 372 ~~~----~~~a~~~a~~~a~~i~~ 391 (396)
+.. ...|.+||+.+|++|..
T Consensus 320 ~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 320 LEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCCccchHHHHHHHHHHHHHHhc
Confidence 753 33788999999999975
No 39
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.4e-31 Score=256.29 Aligned_cols=301 Identities=18% Similarity=0.194 Sum_probs=193.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeeccccc----cccCCCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (396)
.|||+|||||++|+++|..|++.|.+|+|||+ ..+||+|. ..++|.-.+..... ......+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 58999999999999999999999999999999 67888775 33333221110000 000111111101 1234666
Q ss_pred HHHHHHHHHHHhcCCcc--------ee-eeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 82 QFIEYLDHYVSHFNIVP--------SI-RYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~--------~~-~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
++.+++++....+.... .+ .+...+..++ .+.+.+ ++ .+++||+||+||| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~------~~~v~v-~~--------~~~~~d~lIiATG--s~-- 141 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVD------PNTVEV-NG--------ERIEAKNIVIATG--SR-- 141 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEcc------CCEEEE-Cc--------EEEEeCEEEEeCC--CC--
Confidence 66666655444321110 00 1111221111 123444 22 6799999999999 44
Q ss_pred CCCCCCccccccCCCCCc-ceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHH
Q 016069 153 TPDIRGLSSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (396)
+|.+||.... .+ ..++..+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .++|..+.++.
T Consensus 142 ~p~ipg~~~~------~~~~~~~~~~~~~~~-~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~ 213 (460)
T PRK06292 142 VPPIPGVWLI------LGDRLLTSDDAFELD-KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVS 213 (460)
T ss_pred CCCCCCCccc------CCCcEECchHHhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHH
Confidence 4455554321 11 233333322222 247899999999999999999999999999999988 56665544443
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC-
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN- 308 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~- 308 (396)
..+ .+.+++. |+++.+ +.+++.+
T Consensus 214 ~~~-----------------------------------------------------~~~l~~~-I~i~~~~~v~~i~~~~ 239 (460)
T PRK06292 214 KQA-----------------------------------------------------QKILSKE-FKIKLGAKVTSVEKSG 239 (460)
T ss_pred HHH-----------------------------------------------------HHHHhhc-cEEEcCCEEEEEEEcC
Confidence 332 3445666 888776 7777643
Q ss_pred --eEEe--cCC--cEEeCcEEEECCCCCCCccccc-ccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCc
Q 016069 309 --EVIF--ENG--HSHHFDSIVFCTGFKRSTNVWL-KQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGA 378 (396)
Q Consensus 309 --~v~~--~~g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a 378 (396)
.+.+ .++ +++++|.|++|+|++|++..+. + ..+...+++|++.+| ....|+.|+|||+|||+..+ ..|
T Consensus 240 ~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~-~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A 317 (460)
T PRK06292 240 DEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLE-NTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEA 317 (460)
T ss_pred CceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcH-hhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHH
Confidence 3443 233 5789999999999999997543 3 323346778988888 44567899999999998753 489
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
..||+.+|.+|...
T Consensus 318 ~~qg~~aa~~i~~~ 331 (460)
T PRK06292 318 ADEGRIAAENAAGD 331 (460)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999863
No 40
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.4e-31 Score=270.10 Aligned_cols=283 Identities=20% Similarity=0.195 Sum_probs=202.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
+++|+|||+|++|+.+|..|.++ +++|+||++.+..+ |....+.. .... ...++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~~~ 60 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTAEE 60 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCHHH
Confidence 35899999999999999999864 47999999988543 22221110 0000 11223
Q ss_pred HHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016069 83 FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (396)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~ 162 (396)
+........++.+++. +.++.|++++... ..|.+.++ ..+.||+||+||| +.|..|+++|.+..
T Consensus 61 l~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G--------~~i~yD~LVIATG--s~p~~p~ipG~~~~ 124 (847)
T PRK14989 61 LSLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG--------RTVFYDKLIMATG--SYPWIPPIKGSETQ 124 (847)
T ss_pred ccCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC--------cEEECCEEEECCC--CCcCCCCCCCCCCC
Confidence 3223334455567766 8889999998643 23666654 6799999999999 78999999987653
Q ss_pred ccCCCCCcceeeccCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeeh-hhhHHHHHHhh
Q 016069 163 CSSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSR-EMVYLGLVLLR 236 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~-~~~~~~~~~~~ 236 (396)
..+......+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+ ++++. .+......
T Consensus 125 --------~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~--- 192 (847)
T PRK14989 125 --------DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQ--- 192 (847)
T ss_pred --------CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHH---
Confidence 222222211111 1237899999999999999999999999999999988 45443 22222222
Q ss_pred cCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC------
Q 016069 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------ 308 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~------ 308 (396)
+.+.+++.+|+++.+ +.++..+
T Consensus 193 --------------------------------------------------l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~ 222 (847)
T PRK14989 193 --------------------------------------------------LRRKIESMGVRVHTSKNTLEIVQEGVEARK 222 (847)
T ss_pred --------------------------------------------------HHHHHHHCCCEEEcCCeEEEEEecCCCceE
Confidence 246677889999988 7778532
Q ss_pred eEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------ccCchHH
Q 016069 309 EVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAAD 381 (396)
Q Consensus 309 ~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~ 381 (396)
.+.++||+++++|.||+|+|++||+. ++. ..+..++++|.+.+| ..+.|+.|+|||+|||+.. +..|..|
T Consensus 223 ~v~~~dG~~i~~D~Vv~A~G~rPn~~-L~~-~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~ 299 (847)
T PRK14989 223 TMRFADGSELEVDFIVFSTGIRPQDK-LAT-QCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKM 299 (847)
T ss_pred EEEECCCCEEEcCEEEECCCcccCch-HHh-hcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHH
Confidence 36788999999999999999999995 444 324446778888887 4567889999999999854 2367899
Q ss_pred HHHHHHHHhhh
Q 016069 382 AQNIADHINSI 392 (396)
Q Consensus 382 a~~~a~~i~~~ 392 (396)
|+.+|++|.+.
T Consensus 300 a~vaa~~i~g~ 310 (847)
T PRK14989 300 AQVAVDHLLGS 310 (847)
T ss_pred HHHHHHHhcCC
Confidence 99999999764
No 41
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.98 E-value=1.6e-30 Score=248.69 Aligned_cols=291 Identities=18% Similarity=0.221 Sum_probs=193.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC-CCccc-ccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC-YASIW-KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~-~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
+|||+||||||||+++|..|++.|.+|+|||+++. +||++ +..+.|...+...... ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------CCCHHHHH
Confidence 58999999999999999999999999999999864 57753 3333332211100000 01112222
Q ss_pred HH-----------HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 85 EY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 85 ~~-----------l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
.+ ......+.+++. +.+ .+..++ ... |....+.. . .+++||+||+||| ++|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g-~~~~~~----~~~--v~v~~~~~--~---~~~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDA-EAHFVS----NKV--IEVQAGDE--K---IELTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCE--EEEeeCCC--c---EEEEcCEEEEeCC--CCCCC
Confidence 21 122233345442 322 222221 133 43332210 1 5799999999999 78888
Q ss_pred CCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHH
Q 016069 154 PDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLV 233 (396)
Q Consensus 154 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~ 233 (396)
|++||.+.. . ..+++..+..... .+++++|||+|.+|+|+|..+++.|.+|+++.+++ .++|..+.++...
T Consensus 133 p~i~G~~~~------~-~v~~~~~~~~~~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~ 203 (438)
T PRK07251 133 LPIPGLADS------K-HVYDSTGIQSLET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAAL 203 (438)
T ss_pred CCCCCcCCC------C-cEEchHHHhcchh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHH
Confidence 999887543 1 2344333333222 37899999999999999999999999999999988 5555544433322
Q ss_pred HhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC--e
Q 016069 234 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E 309 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~--~ 309 (396)
..+.+++.+|+++.+ +++++.+ .
T Consensus 204 -----------------------------------------------------~~~~l~~~GI~i~~~~~V~~i~~~~~~ 230 (438)
T PRK07251 204 -----------------------------------------------------AKQYMEEDGITFLLNAHTTEVKNDGDQ 230 (438)
T ss_pred -----------------------------------------------------HHHHHHHcCCEEEcCCEEEEEEecCCE
Confidence 134566778998877 7777643 3
Q ss_pred E-EecCCcEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cCchHHHHH
Q 016069 310 V-IFENGHSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQN 384 (396)
Q Consensus 310 v-~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~a~~ 384 (396)
+ ...+|+++++|.||+|+|++|+...+ ++ ......+++|.+.+| ....|+.|+|||+|||+... ..|..+++.
T Consensus 231 v~v~~~g~~i~~D~viva~G~~p~~~~l~l~-~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~ 308 (438)
T PRK07251 231 VLVVTEDETYRFDALLYATGRKPNTEPLGLE-NTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRI 308 (438)
T ss_pred EEEEECCeEEEcCEEEEeeCCCCCcccCCch-hcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHH
Confidence 3 33467889999999999999998543 22 212335677888887 35668899999999998763 477788888
Q ss_pred HHHHHhh
Q 016069 385 IADHINS 391 (396)
Q Consensus 385 ~a~~i~~ 391 (396)
++.++.+
T Consensus 309 ~~~~~~~ 315 (438)
T PRK07251 309 VFGYLTG 315 (438)
T ss_pred HHHHHcC
Confidence 8888865
No 42
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.98 E-value=6.6e-31 Score=252.30 Aligned_cols=287 Identities=16% Similarity=0.228 Sum_probs=193.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
++|+|||||++|+++|..|++.+ .+|+|||+++..+ |... .++... ...+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhc
Confidence 37999999999999999999875 4899999987543 1100 000000 000112233333
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEE--eCEEEEeecCCCCCCCCCCCCccccc
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS--GRFLVVASGETSNPFTPDIRGLSSFC 163 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~--~d~vviAtG~~s~p~~~~~~g~~~~~ 163 (396)
+..+.+.+.+++. +.++.|++++.+. +.+.+....+ + ..++ ||+||+||| ++|..|.++|.+..
T Consensus 61 ~~~~~~~~~gv~~--~~~~~V~~id~~~--~~v~~~~~~~---~----~~~~~~yd~lviAtG--~~~~~~~i~g~~~~- 126 (444)
T PRK09564 61 RTPEEFIKSGIDV--KTEHEVVKVDAKN--KTITVKNLKT---G----SIFNDTYDKLMIATG--ARPIIPPIKNINLE- 126 (444)
T ss_pred CCHHHHHHCCCeE--EecCEEEEEECCC--CEEEEEECCC---C----CEEEecCCEEEECCC--CCCCCCCCCCcCCC-
Confidence 3344455667665 7899999998765 5543432111 1 3444 999999999 78888888886532
Q ss_pred cCCCCCcceeeccCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeeh-hhhHHHHHHh
Q 016069 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSR-EMVYLGLVLL 235 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-------~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~-~~~~~~~~~~ 235 (396)
..++...+.+. ....+++++|+|+|.+|+|+|..+.+.|.+|+++.+.+ ..++. .+.++...
T Consensus 127 -------~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~-- 196 (444)
T PRK09564 127 -------NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDV-- 196 (444)
T ss_pred -------CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHH--
Confidence 23333222111 12247899999999999999999999999999999887 34432 22222221
Q ss_pred hcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe---E
Q 016069 236 RYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE---V 310 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~---v 310 (396)
+.+.+++.+|+++.+ +.+++.++ .
T Consensus 197 ---------------------------------------------------l~~~l~~~gI~v~~~~~v~~i~~~~~~~~ 225 (444)
T PRK09564 197 ---------------------------------------------------MEEELRENGVELHLNEFVKSLIGEDKVEG 225 (444)
T ss_pred ---------------------------------------------------HHHHHHHCCCEEEcCCEEEEEecCCcEEE
Confidence 235566778888877 77776542 2
Q ss_pred EecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------------ccC
Q 016069 311 IFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYG 377 (396)
Q Consensus 311 ~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~ 377 (396)
+..++.++++|.+++|+|+.|+.+ +++ ..+..++++|++.+|. .+.|+.|||||+|||+.. ...
T Consensus 226 v~~~~~~i~~d~vi~a~G~~p~~~-~l~-~~gl~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~ 302 (444)
T PRK09564 226 VVTDKGEYEADVVIVATGVKPNTE-FLE-DTGLKTLKNGAIIVDE-YGETSIENIYAAGDCATIYNIVSNKNVYVPLATT 302 (444)
T ss_pred EEeCCCEEEcCEEEECcCCCcCHH-HHH-hcCccccCCCCEEECC-CcccCCCCEEEeeeEEEEEeccCCCeeeccchHH
Confidence 334566899999999999999985 444 3233456778888884 455789999999999753 127
Q ss_pred chHHHHHHHHHHhhh
Q 016069 378 AAADAQNIADHINSI 392 (396)
Q Consensus 378 a~~~a~~~a~~i~~~ 392 (396)
|.+||+.+|+||.+.
T Consensus 303 A~~qg~~~a~ni~g~ 317 (444)
T PRK09564 303 ANKLGRMVGENLAGR 317 (444)
T ss_pred HHHHHHHHHHHhcCC
Confidence 889999999999864
No 43
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=1e-30 Score=250.87 Aligned_cols=300 Identities=16% Similarity=0.234 Sum_probs=192.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeecccccccc------CCCCCCCCCCCCCCCHHH
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVSRAQ 82 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 82 (396)
+|+|||||++|+++|..|++.|.+|+|||+....|...+..+.|.-.+.-...++. ......... ....+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHHH
Confidence 89999999999999999999999999999975433344555555332211100000 001110000 00123333
Q ss_pred HHHHHHH-----------HHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 83 FIEYLDH-----------YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 83 ~~~~l~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
+..+..+ ..+..+++ ++..++..++ ...+.|...++ . .+++||+||+||| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~----~---~~~~~d~lviATG--s~p 144 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK----E---EVVDAEQFIIAAG--SEP 144 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC----c---EEEECCEEEEeCC--CCC
Confidence 3333222 22223433 2333343332 24445554332 1 5799999999999 778
Q ss_pred CCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHH
Q 016069 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (396)
+.|++++.+.. ..+++.+...... .+++++|||+|++|+|+|..+.+.|.+|+++.+.+ .++|..+.++.
T Consensus 145 ~~~p~~~~~~~--------~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~ 214 (458)
T PRK06912 145 TELPFAPFDGK--------WIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIA 214 (458)
T ss_pred CCCCCCCCCCC--------eEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHH
Confidence 77766654432 2344333333222 37899999999999999999999999999999988 55565444333
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC-
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN- 308 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~- 308 (396)
..+ .+.+++.+|+++.+ +++++.+
T Consensus 215 ~~l-----------------------------------------------------~~~L~~~GI~i~~~~~V~~i~~~~ 241 (458)
T PRK06912 215 HIL-----------------------------------------------------REKLENDGVKIFTGAALKGLNSYK 241 (458)
T ss_pred HHH-----------------------------------------------------HHHHHHCCCEEEECCEEEEEEEcC
Confidence 322 35566778999887 7787654
Q ss_pred -eEEec-CC--cEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc---CchH
Q 016069 309 -EVIFE-NG--HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAA 380 (396)
Q Consensus 309 -~v~~~-~g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~ 380 (396)
.+.+. +| .++++|.|++|+|.+|+...+ ++ ..+...+++| +.+| ..+.|+.|+|||+||++..+. .|..
T Consensus 242 ~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~-~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~ 318 (458)
T PRK06912 242 KQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLE-KAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFH 318 (458)
T ss_pred CEEEEEECCceEEEEeCEEEEecCCccCCCCCCch-hcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHH
Confidence 24443 44 368999999999999998644 23 2123345566 6666 456688999999999987533 8899
Q ss_pred HHHHHHHHHhh
Q 016069 381 DAQNIADHINS 391 (396)
Q Consensus 381 ~a~~~a~~i~~ 391 (396)
||+.+|.+|..
T Consensus 319 ~g~~aa~~~~g 329 (458)
T PRK06912 319 EGTTAALHASG 329 (458)
T ss_pred HHHHHHHHHcC
Confidence 99999999975
No 44
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=1.3e-30 Score=251.18 Aligned_cols=308 Identities=15% Similarity=0.186 Sum_probs=195.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEec------CCCCCccccc-CCcCceee-ccccccccCC----CCCCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER------ENCYASIWKK-YSYDRLRL-HLAKQFCQLP----HLPFPSSY 74 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~------~~~~gg~~~~-~~~~~~~~-~~~~~~~~~~----~~~~~~~~ 74 (396)
.||++|||||++|+++|..+++.|.+|+|+|+ ....||+|.. .+.|...+ .....+..+. .+-....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 58999999999999999999999999999998 3467776643 33333111 1100000000 0000000
Q ss_pred CCCCCHHHHHH-----------HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEE
Q 016069 75 PMFVSRAQFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 75 ~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
..-.....+.+ ......+..+++ ....++..++... ..|+|.+..+.+ .+++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~------~~~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE------TVITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC------eEEEeCEEEE
Confidence 00012222222 222333344554 3344555555433 456677653221 5799999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceee
Q 016069 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVL 223 (396)
Q Consensus 144 AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~ 223 (396)
||| +.|+.++..+.... ..+++....... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+++ .++
T Consensus 152 ATG--s~p~~~p~~~~~~~--------~~~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l 219 (475)
T PRK06327 152 ATG--SEPRHLPGVPFDNK--------IILDNTGALNFT-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL 219 (475)
T ss_pred eCC--CCCCCCCCCCCCCc--------eEECcHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence 999 67754332221111 122222222222 237899999999999999999999999999999988 555
Q ss_pred ehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--
Q 016069 224 SREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-- 301 (396)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-- 301 (396)
|..+.++...+ .+.+++.+|+++.+
T Consensus 220 ~~~d~~~~~~~-----------------------------------------------------~~~l~~~gi~i~~~~~ 246 (475)
T PRK06327 220 AAADEQVAKEA-----------------------------------------------------AKAFTKQGLDIHLGVK 246 (475)
T ss_pred CcCCHHHHHHH-----------------------------------------------------HHHHHHcCcEEEeCcE
Confidence 54443333322 34566678999887
Q ss_pred ceeEECC--e--EEecC--C--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccc
Q 016069 302 IESIRGN--E--VIFEN--G--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 373 (396)
Q Consensus 302 v~~~~~~--~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 373 (396)
+.+++.+ + +.+.+ | +++++|.|++|+|++|++..+.....+..++++|.+.+|. .+.|+.|+|||+|||+.
T Consensus 247 v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~Ts~~~VyA~GD~~~ 325 (475)
T PRK06327 247 IGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD-HCRTNVPNVYAIGDVVR 325 (475)
T ss_pred EEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC-CCccCCCCEEEEEeccC
Confidence 7888643 3 44444 3 4689999999999999996543202233467788888873 45688999999999987
Q ss_pred cc---cCchHHHHHHHHHHhhh
Q 016069 374 GL---YGAAADAQNIADHINSI 392 (396)
Q Consensus 374 ~~---~~a~~~a~~~a~~i~~~ 392 (396)
.+ ..|..||+.+|.+|...
T Consensus 326 ~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 326 GPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred CcchHHHHHHHHHHHHHHHcCC
Confidence 53 37899999999999763
No 45
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2e-30 Score=249.96 Aligned_cols=302 Identities=16% Similarity=0.195 Sum_probs=195.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc-cCCcCceeecccccccc----CCCCCCCCCCCCCCCHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (396)
|||+|||||++|+++|..|++.|.+|+|||+ +.+||+|. ..++|...+.....++. ...+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 8999999999999999999999999999999 77888764 34444422211111100 000000000 00122233
Q ss_pred HHHHH-----------HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 83 FIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 83 ~~~~l-----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
+.+.. ....++.+++. . ..++..++ ...+.+...++ . ..++||+||+||| +.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~g~~~~~~----~~~~~v~~~~g----~---~~~~~d~lVlAtG--~~p 143 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTV--I-KGEAKFLD----PGTVLVTGENG----E---ETLTAKNIIIATG--SRP 143 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEE--E-EEEEEEcc----CCEEEEecCCC----c---EEEEeCEEEEcCC--CCC
Confidence 32222 22333445442 3 23333332 24455554432 1 4799999999999 778
Q ss_pred CCCCCC-CccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHH
Q 016069 152 FTPDIR-GLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (396)
Q Consensus 152 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (396)
+.|+++ +... ....+..+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ..+|..+.++
T Consensus 144 ~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~ 213 (461)
T TIGR01350 144 RSLPGPFDFDG--------EVVITSTGALNLK-EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAEV 213 (461)
T ss_pred CCCCCCCCCCC--------ceEEcchHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHHH
Confidence 777665 2221 1123332222222 237899999999999999999999999999999988 4555443322
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC-
Q 016069 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 307 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~- 307 (396)
... +.+.+++.+|+++.+ +.+++.
T Consensus 214 ~~~-----------------------------------------------------~~~~l~~~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 214 SKV-----------------------------------------------------VAKALKKKGVKILTNTKVTAVEKN 240 (461)
T ss_pred HHH-----------------------------------------------------HHHHHHHcCCEEEeCCEEEEEEEe
Confidence 222 235566778998887 777753
Q ss_pred -CeE--EecCC--cEEeCcEEEECCCCCCCcccc-cccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---ccCc
Q 016069 308 -NEV--IFENG--HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LYGA 378 (396)
Q Consensus 308 -~~v--~~~~g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~~a 378 (396)
+++ .+.+| +++++|.+|+|+|+.|++..+ ++ ......+++|.+.++ ....++.|+|||+|||+.. ...|
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A 318 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLE-NLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVA 318 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcH-hhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHH
Confidence 344 33466 478999999999999999643 33 323446778888888 4556789999999999865 3388
Q ss_pred hHHHHHHHHHHhhh
Q 016069 379 AADAQNIADHINSI 392 (396)
Q Consensus 379 ~~~a~~~a~~i~~~ 392 (396)
..||+.+|++|...
T Consensus 319 ~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 319 SHEGIVAAENIAGK 332 (461)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999864
No 46
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-30 Score=244.43 Aligned_cols=278 Identities=17% Similarity=0.257 Sum_probs=191.4
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
++|+|||||+||+++|..|++. +.+|+|+++++... |.... .+..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--------------l~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--------------LSHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--------------CcHHHhCCCCHHHhhc
Confidence 5899999999999999999885 45899999876321 11000 0000111123334333
Q ss_pred -HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 86 -~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
...+++++++++. +.+++|++++.+. . .+.+. + ..+.||+||+||| +.|..|+++|.+..
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~-~--------~~~~yd~LVlATG--~~~~~p~i~G~~~v-- 122 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA--Q--VVKSQ-G--------NQWQYDKLVLATG--ASAFVPPIPGRELM-- 122 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC--C--EEEEC-C--------eEEeCCEEEECCC--CCCCCCCCCCCceE--
Confidence 2445566677765 8889999998753 3 35543 2 6799999999999 78888888886432
Q ss_pred CCCCCcceeeccCCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh-hhHHHHHHhhcC
Q 016069 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYV 238 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~ 238 (396)
++.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .+++.. +....
T Consensus 123 --------~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~~~~~~------- 186 (377)
T PRK04965 123 --------LTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLMPPEVS------- 186 (377)
T ss_pred --------EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhCCHHHH-------
Confidence 11111110 111236899999999999999999999999999999988 343332 11111
Q ss_pred ChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC----eEEe
Q 016069 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIF 312 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~----~v~~ 312 (396)
..+.+.+++.+|+++.+ +++++.+ .+.+
T Consensus 187 ----------------------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~ 220 (377)
T PRK04965 187 ----------------------------------------------SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATL 220 (377)
T ss_pred ----------------------------------------------HHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEE
Confidence 11235566778888876 8887654 3677
Q ss_pred cCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------ccCchHHHHHH
Q 016069 313 ENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNI 385 (396)
Q Consensus 313 ~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~~~ 385 (396)
++|+++++|.||+|+|.+|++. +.. . .++..++| +.+| +.+.|+.|+|||+|||+.. ...|..||+.+
T Consensus 221 ~~g~~i~~D~vI~a~G~~p~~~-l~~-~-~gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~ 295 (377)
T PRK04965 221 DSGRSIEVDAVIAAAGLRPNTA-LAR-R-AGLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMAL 295 (377)
T ss_pred cCCcEEECCEEEECcCCCcchH-HHH-H-CCCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHH
Confidence 8999999999999999999984 333 2 23333456 6666 3566889999999999753 22588999999
Q ss_pred HHHHhhh
Q 016069 386 ADHINSI 392 (396)
Q Consensus 386 a~~i~~~ 392 (396)
|+||.+.
T Consensus 296 a~n~~g~ 302 (377)
T PRK04965 296 AKNLLGQ 302 (377)
T ss_pred HHHhcCC
Confidence 9999764
No 47
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=2.9e-30 Score=246.74 Aligned_cols=279 Identities=20% Similarity=0.212 Sum_probs=187.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+||||||+|+++|..|+++|++|+|+|+.+..||.+... ++.+. .+.+++..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~--------l~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFR--------LPKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCcc--------CCccHHHH
Confidence 46899999999999999999999999999999988888875421 11111 12233555
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
+..+.++++++++ ++++.+. .. +...+.. ..+.||.||+|||+ ..|+.++++|.+..
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~--------~~--v~~~~~~-------~~~~~d~viiAtGa-~~~~~l~ipG~~~~--- 252 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVG--------KT--VTIDELL-------EEEGFDAVFIGSGA-GLPKFMGIPGENLN--- 252 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEEC--------Cc--CCHHHHH-------hccCCCEEEEeCCC-CCCCCCCCCCcCCc---
Confidence 5556667778765 7777551 11 2222210 34579999999995 26777888886532
Q ss_pred CCCCcceeeccCCC-------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHH
Q 016069 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGL 232 (396)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~ 232 (396)
.+++..++. ......+++++|||+|.+|+|+|..+.++|.+|+++.|+....+|....+
T Consensus 253 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e--- 324 (464)
T PRK12831 253 -----GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE--- 324 (464)
T ss_pred -----CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH---
Confidence 122221111 11223589999999999999999999999999999998763222222111
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC--C
Q 016069 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N 308 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~--~ 308 (396)
.+.+++.+|+++.+ +.++.. +
T Consensus 325 -------------------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 325 -------------------------------------------------------VHHAKEEGVIFDLLTNPVEILGDEN 349 (464)
T ss_pred -------------------------------------------------------HHHHHHcCCEEEecccceEEEecCC
Confidence 01122345554443 333321 1
Q ss_pred e----EEec------------------CC--cEEeCcEEEECCCCCCCcccccccC-CCCCCCCCCCcCCCCCCCccCCC
Q 016069 309 E----VIFE------------------NG--HSHHFDSIVFCTGFKRSTNVWLKQG-DDSMLNDDGIPKQSYPNHWKGKN 363 (396)
Q Consensus 309 ~----v~~~------------------~g--~~~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 363 (396)
+ +.+. +| .++++|.||+|+|..|+.. ++. . .+..++++|.+.++...+.|+.|
T Consensus 350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~-~~~gl~~~~~G~i~vd~~~~~Ts~p 427 (464)
T PRK12831 350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISS-TTKGLKINKRGCIVADEETGLTSKE 427 (464)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh-hhc-ccCCceECCCCcEEECCCCCccCCC
Confidence 1 1110 23 2689999999999999984 443 2 23345677888888555789999
Q ss_pred ceEEEecccccc---cCchHHHHHHHHHHhhhcCC
Q 016069 364 GLYCVGLSRKGL---YGAAADAQNIADHINSILSP 395 (396)
Q Consensus 364 ~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~~ 395 (396)
+|||+||+..++ ..|+.+|+.+|.+|...|..
T Consensus 428 gVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 428 GVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998764 48999999999999998764
No 48
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=1.9e-30 Score=242.83 Aligned_cols=289 Identities=16% Similarity=0.199 Sum_probs=195.2
Q ss_pred eEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 9 EVIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
+|+|||||+||+.+|.+|.++ +.+|+|||+++..- |.. . .+..........++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~-------------~--~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSG-------------M--LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccc-------------h--hhHHHheeCCHHHhcc
Confidence 589999999999999999754 67999999887311 100 0 0000011123345555
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
.+.+.+++.+++ +...+|++++.+. + .|.+.++ ++++||+||+||| +.+..|.+||..+....
T Consensus 59 ~~~~~~~~~gv~---~~~~~v~~id~~~--~--~V~~~~g--------~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~ 121 (364)
T TIGR03169 59 DLRRLARQAGAR---FVIAEATGIDPDR--R--KVLLANR--------PPLSYDVLSLDVG--STTPLSGVEGAADLAVP 121 (364)
T ss_pred cHHHHHHhcCCE---EEEEEEEEEeccc--C--EEEECCC--------CcccccEEEEccC--CCCCCCCCCcccccccc
Confidence 556666777766 3456899998764 3 3777765 5699999999999 78888888885432000
Q ss_pred CCCCcceeeccC-CCC-C-CCCCCCeEEEEcCCCCHHHHHHHHHhh----c--CceEEEEecCceeeehhhhHHHHHHhh
Q 016069 166 ATGTGEVIHSTQ-YKN-G-KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVIRSPVHVLSREMVYLGLVLLR 236 (396)
Q Consensus 166 ~~~~~~~~~~~~-~~~-~-~~~~~~~i~VvG~G~~g~e~a~~l~~~----g--~~v~~~~r~~~~~~p~~~~~~~~~~~~ 236 (396)
+........... ... . ....+++++|+|+|.+|+|+|..|.+. | .+|+++ +.+ ..++..+......
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~~~~--- 196 (364)
T TIGR03169 122 VKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKVRRL--- 196 (364)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHHHHH---
Confidence 000000000000 000 0 011257999999999999999999863 3 479998 444 3333322222221
Q ss_pred cCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCeEEecC
Q 016069 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFEN 314 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~v~~~~ 314 (396)
+.+.+++.+|+++.+ +.+++.+.+.+++
T Consensus 197 --------------------------------------------------~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~ 226 (364)
T TIGR03169 197 --------------------------------------------------VLRLLARRGIEVHEGAPVTRGPDGALILAD 226 (364)
T ss_pred --------------------------------------------------HHHHHHHCCCEEEeCCeeEEEcCCeEEeCC
Confidence 245677789999987 8888888899999
Q ss_pred CcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc--------ccCchHHHHHHH
Q 016069 315 GHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG--------LYGAAADAQNIA 386 (396)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~--------~~~a~~~a~~~a 386 (396)
|+++++|.+|+|+|.+|+. .+.. . ....+++|.+.+|...+.++.|+|||+|||+.. ...|..||+.+|
T Consensus 227 g~~i~~D~vi~a~G~~p~~-~l~~-~-gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a 303 (364)
T TIGR03169 227 GRTLPADAILWATGARAPP-WLAE-S-GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILA 303 (364)
T ss_pred CCEEecCEEEEccCCChhh-HHHH-c-CCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHH
Confidence 9999999999999999986 3332 2 344577889988855555589999999999753 126899999999
Q ss_pred HHHhhhcC
Q 016069 387 DHINSILS 394 (396)
Q Consensus 387 ~~i~~~l~ 394 (396)
+||.+.+.
T Consensus 304 ~ni~~~l~ 311 (364)
T TIGR03169 304 ANLRASLR 311 (364)
T ss_pred HHHHHHhc
Confidence 99988765
No 49
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=3.7e-30 Score=246.05 Aligned_cols=298 Identities=15% Similarity=0.175 Sum_probs=187.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccCCcCceeecccccccc-C---CCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 81 (396)
+||++|||+|++|..+|.. ..|.+|+|||++ .+|| +.+..+.|.-.+.-...... . ..+-.... ..-.+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 469999999985 4666 44555555433221111100 0 00100000 0012333
Q ss_pred HHHHHHHH-HHHh--------------cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016069 82 QFIEYLDH-YVSH--------------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (396)
Q Consensus 82 ~~~~~l~~-~~~~--------------~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG 146 (396)
.+.++... .... .++++ +.+..+.. +.++|.+.++ .+++||+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~~~-------~~~~V~~~~g--------~~~~~d~lIiATG 140 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDV--YDGHARFV-------GPRTLRTGDG--------EEITGDQIVIAAG 140 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEE--EEEEEEEe-------cCCEEEECCC--------cEEEeCEEEEEEC
Confidence 44443322 1111 23322 33332211 2344666543 5689999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh
Q 016069 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE 226 (396)
Q Consensus 147 ~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~ 226 (396)
+.|..|+..+.... ...+..+...... .+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .+++..
T Consensus 141 --s~p~~p~~~~~~~~--------~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~ 208 (452)
T TIGR03452 141 --SRPYIPPAIADSGV--------RYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHL 208 (452)
T ss_pred --CCCCCCCCCCCCCC--------EEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-cccccc
Confidence 78887764332111 1222222222222 27899999999999999999999999999999988 455544
Q ss_pred hhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--cee
Q 016069 227 MVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IES 304 (396)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~ 304 (396)
+.++...+ .+ +.+.+|+++.+ +.+
T Consensus 209 d~~~~~~l-----------------------------------------------------~~-~~~~gI~i~~~~~V~~ 234 (452)
T TIGR03452 209 DEDISDRF-----------------------------------------------------TE-IAKKKWDIRLGRNVTA 234 (452)
T ss_pred CHHHHHHH-----------------------------------------------------HH-HHhcCCEEEeCCEEEE
Confidence 44333221 12 22246788776 777
Q ss_pred EECC--e--EEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc---cC
Q 016069 305 IRGN--E--VIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YG 377 (396)
Q Consensus 305 ~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~ 377 (396)
++.+ + +.+.+|+++++|.|++|+|++||+..+.....+..++++|++.+|.. +.|+.|+|||+|||+... ..
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~ 313 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEY-GRTSARGVWALGDVSSPYQLKHV 313 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCC-cccCCCCEEEeecccCcccChhH
Confidence 7632 3 45567889999999999999999954422022334677898988844 558999999999998753 37
Q ss_pred chHHHHHHHHHHhhh
Q 016069 378 AAADAQNIADHINSI 392 (396)
Q Consensus 378 a~~~a~~~a~~i~~~ 392 (396)
|.+||+.+|+||.+.
T Consensus 314 A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 314 ANAEARVVKHNLLHP 328 (452)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999864
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=4.1e-30 Score=245.37 Aligned_cols=273 Identities=18% Similarity=0.231 Sum_probs=184.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||||++|+++|..|++.|++|+|+|+.+..||.+... ++ .+....++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHHHH
Confidence 35899999999999999999999999999999988888765321 11 1111234444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.+.++++++ +.+..+ . . .+++.+ ....||+||+|||+ +.|+.|.++|.+..
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v------~--~--~v~~~~---------~~~~yd~viiAtGa-~~p~~~~ipG~~~~--- 242 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLV------G--K--TATLEE---------LFSQYDAVFIGTGA-GLPKLMNIPGEELC--- 242 (449)
T ss_pred HHHHHHHhCCcEE--EeCCcc------C--C--cCCHHH---------HHhhCCEEEEeCCC-CCCCcCCCCCCCCC---
Confidence 4444556667665 666543 0 1 133332 22468999999995 36888888886531
Q ss_pred CCCCcceeeccCCC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHH
Q 016069 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (396)
+ +++..++. ......+++++|||+|.+|+|+|..+.+.|.+||++.|++...++....
T Consensus 243 ----g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~--- 314 (449)
T TIGR01316 243 ----G-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVE--- 314 (449)
T ss_pred ----C-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH---
Confidence 1 22221110 1112347899999999999999999999999999999886311111100
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC-
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN- 308 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~- 308 (396)
..+.+++.+|+++.+ ++++..+
T Consensus 315 -------------------------------------------------------~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 315 -------------------------------------------------------EIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred -------------------------------------------------------HHHHHHhCCCEEEeccCcEEEEEcC
Confidence 123345566776655 5555321
Q ss_pred -----eEEec---------CC-----------cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCC
Q 016069 309 -----EVIFE---------NG-----------HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKN 363 (396)
Q Consensus 309 -----~v~~~---------~g-----------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 363 (396)
+|.+. +| .++++|.||+|+|..|++ .+++ ..+..++++|.+.++ ..+.|+.|
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~-~~gl~~~~~G~i~vd-~~~~Ts~~ 416 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAE-TTRLKTSERGTIVVD-EDQRTSIP 416 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhh-ccCcccCCCCeEEeC-CCCccCCC
Confidence 12222 22 368999999999999998 4444 323446778888887 45678899
Q ss_pred ceEEEecccccc---cCchHHHHHHHHHHhhhc
Q 016069 364 GLYCVGLSRKGL---YGAAADAQNIADHINSIL 393 (396)
Q Consensus 364 ~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l 393 (396)
+|||+||++.++ ..|+.+|+.+|.+|...|
T Consensus 417 ~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 417 GVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999999998663 389999999999998765
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=243.52 Aligned_cols=283 Identities=16% Similarity=0.199 Sum_probs=186.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
..+|+|||||+||+++|..|++++. +|+|+++.+... |....+ +..+.. . ..... .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~~l--~~~~~~--~-~~~~~-~~~~~----- 64 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERPPL--SKSMLL--E-DSPQL-QQVLP----- 64 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCCCC--CHHHHC--C-CCccc-cccCC-----
Confidence 3689999999999999999999876 799999886432 111000 000000 0 00000 00001
Q ss_pred HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
.+...+.+++. +.++.|..++... . .|.+.++ ..+.||+||+||| +.|+.+++++....
T Consensus 65 ---~~~~~~~~i~~--~~g~~V~~id~~~--~--~v~~~~g--------~~~~yd~LViATG--s~~~~~p~~~~~~~-- 123 (396)
T PRK09754 65 ---ANWWQENNVHL--HSGVTIKTLGRDT--R--ELVLTNG--------ESWHWDQLFIATG--AAARPLPLLDALGE-- 123 (396)
T ss_pred ---HHHHHHCCCEE--EcCCEEEEEECCC--C--EEEECCC--------CEEEcCEEEEccC--CCCCCCCCCCcCCC--
Confidence 12233456665 7888999998753 2 3666654 6799999999999 67766665443221
Q ss_pred CCCCCcceeeccCCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh-hhHHHHHHhhcC
Q 016069 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYV 238 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-----~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~ 238 (396)
..+......+. ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++++. +.....
T Consensus 124 ------~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~------ 190 (396)
T PRK09754 124 ------RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAPPPVQR------ 190 (396)
T ss_pred ------CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcCHHHHH------
Confidence 12222111111 11237899999999999999999999999999999988 444332 111111
Q ss_pred ChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC---eEEec
Q 016069 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---EVIFE 313 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~---~v~~~ 313 (396)
.+.+.+++.+|+++.+ +++++.+ .+.+.
T Consensus 191 -----------------------------------------------~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~ 223 (396)
T PRK09754 191 -----------------------------------------------YLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQ 223 (396)
T ss_pred -----------------------------------------------HHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEEC
Confidence 1235566778998877 7777643 25678
Q ss_pred CCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc------------ccCchHH
Q 016069 314 NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG------------LYGAAAD 381 (396)
Q Consensus 314 ~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~------------~~~a~~~ 381 (396)
+|+++++|.||+|+|.+||+. ++. . .++..+ +.+.+| ..+.|+.|+|||+|||+.. ...|..|
T Consensus 224 ~g~~i~aD~Vv~a~G~~pn~~-l~~-~-~gl~~~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~q 298 (396)
T PRK09754 224 SGETLQADVVIYGIGISANDQ-LAR-E-ANLDTA-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQ 298 (396)
T ss_pred CCCEEECCEEEECCCCChhhH-HHH-h-cCCCcC-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHH
Confidence 899999999999999999984 444 3 223233 446666 4566789999999999742 1268899
Q ss_pred HHHHHHHHhhhc
Q 016069 382 AQNIADHINSIL 393 (396)
Q Consensus 382 a~~~a~~i~~~l 393 (396)
|+.+|+||.+..
T Consensus 299 g~~aa~ni~g~~ 310 (396)
T PRK09754 299 AQIAAAAMLGLP 310 (396)
T ss_pred HHHHHHHhcCCC
Confidence 999999998643
No 52
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-30 Score=207.70 Aligned_cols=285 Identities=19% Similarity=0.252 Sum_probs=209.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC----CCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
-+|+|||+|||+.++|..+++..++-+|+|--. ..||++- .....-.|+.+ +.=+.+.++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt----------TTT~veNfPGF------Pdgi~G~~l 72 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT----------TTTDVENFPGF------PDGITGPEL 72 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee----------eeeccccCCCC------CcccccHHH
Confidence 489999999999999999999999999999532 1123221 11111122222 222467899
Q ss_pred HHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc--cc
Q 016069 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL--SS 161 (396)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~--~~ 161 (396)
.+.+++.++++|.+ .+...|.+++... ..|.+.++. +.+.+|.||+|||+ ..+...+||. ..
T Consensus 73 ~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~---------~~v~~~avI~atGA--sAkRl~~pg~ge~~ 136 (322)
T KOG0404|consen 73 MDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA---------RPVTADAVILATGA--SAKRLHLPGEGEGE 136 (322)
T ss_pred HHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC---------CceeeeeEEEeccc--ceeeeecCCCCcch
Confidence 99999999999987 6778898998876 889999865 67999999999995 4455556654 33
Q ss_pred cccCCCCCcceeeccCCCCCCC--CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCC
Q 016069 162 FCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (396)
| +...+..|..++... ++++..+|||||.+++|-|..|...+.+|++++|++++..+..++
T Consensus 137 f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq----------- 199 (322)
T KOG0404|consen 137 F------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQ----------- 199 (322)
T ss_pred H------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHH-----------
Confidence 6 777888888888765 889999999999999999999999999999999999644333322
Q ss_pred hhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC---------
Q 016069 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--------- 308 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~--------- 308 (396)
.+.+++.+|+++.+ +.+.-.+
T Consensus 200 ------------------------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~i 231 (322)
T KOG0404|consen 200 ------------------------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLRI 231 (322)
T ss_pred ------------------------------------------------HHHhcCCCeEEEechhhhhhccCcccccceEE
Confidence 23455567777666 2222222
Q ss_pred -eEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc----CchHHHH
Q 016069 309 -EVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY----GAAADAQ 383 (396)
Q Consensus 309 -~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~----~a~~~a~ 383 (396)
.+...+.+.++++-+++++|+.|+++ ++. . ...+|++|++++......|++|++||+||+++.-+ +|...+.
T Consensus 232 kn~~tge~~dl~v~GlFf~IGH~Pat~-~l~-g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGc 308 (322)
T KOG0404|consen 232 KNVKTGEETDLPVSGLFFAIGHSPATK-FLK-G-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGC 308 (322)
T ss_pred EecccCcccccccceeEEEecCCchhh-Hhc-C-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccch
Confidence 23333446789999999999999995 444 3 67799999999886677899999999999987632 4445555
Q ss_pred HHHHHHhhh
Q 016069 384 NIADHINSI 392 (396)
Q Consensus 384 ~~a~~i~~~ 392 (396)
++|-....+
T Consensus 309 iaaldAe~y 317 (322)
T KOG0404|consen 309 IAALDAERY 317 (322)
T ss_pred hhhhhHHHH
Confidence 555444443
No 53
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=3.9e-30 Score=251.89 Aligned_cols=311 Identities=18% Similarity=0.187 Sum_probs=192.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CCCCcc-cccCCcCceeeccccc------------cccCC--CCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NCYASI-WKKYSYDRLRLHLAKQ------------FCQLP--HLPF 70 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~-~~~gg~-~~~~~~~~~~~~~~~~------------~~~~~--~~~~ 70 (396)
+||++|||+|++|.++|..+++.|.+|+|||+. ..+||+ .+..+.|.-.+.-... .+.+. .++.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 357774 3444444322111100 01111 0000
Q ss_pred --------CCCC--CCCCCHHHHHHHHHHHHHhcC--Ccc-----eeeeceEEEEEEEcCC--CCceEEEEeecCCCCce
Q 016069 71 --------PSSY--PMFVSRAQFIEYLDHYVSHFN--IVP-----SIRYQRSVESASYDEA--TNMWNVKASNLLSPGRV 131 (396)
Q Consensus 71 --------~~~~--~~~~~~~~~~~~l~~~~~~~~--~~~-----~~~~~~~v~~i~~~~~--~~~~~v~~~~~~~~g~~ 131 (396)
.... ..-.+...+.++.+....+.. +.. .+...++.+.+..... .+..+|.... .+
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~-~g---- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEK-SG---- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEcc-CC----
Confidence 0000 111345555555544433321 000 0011111222222110 0111233321 11
Q ss_pred eeEEEEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCc
Q 016069 132 IEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~ 211 (396)
.++.||+||+||| ++|..|+.++.+.. .++++.+...... .+++++|||+|.+|+|+|..+...|.+
T Consensus 271 --~~i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~G~e 337 (659)
T PTZ00153 271 --KEFKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTALGSE 337 (659)
T ss_pred --EEEECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhCCCe
Confidence 5789999999999 78888875554332 2444433333222 378999999999999999999999999
Q ss_pred eEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhh-
Q 016069 212 TSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEK- 290 (396)
Q Consensus 212 v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 290 (396)
||++++.+ .++|..+.++...+ .+.
T Consensus 338 VTLIe~~~-~ll~~~d~eis~~l-----------------------------------------------------~~~l 363 (659)
T PTZ00153 338 VVSFEYSP-QLLPLLDADVAKYF-----------------------------------------------------ERVF 363 (659)
T ss_pred EEEEeccC-cccccCCHHHHHHH-----------------------------------------------------HHHH
Confidence 99999998 66666555444433 222
Q ss_pred hcCCCeEEccC--ceeEECCe----EEe--cC-------C--------cEEeCcEEEECCCCCCCcccc-cccCCCCCCC
Q 016069 291 IKSGQIQVLPG--IESIRGNE----VIF--EN-------G--------HSHHFDSIVFCTGFKRSTNVW-LKQGDDSMLN 346 (396)
Q Consensus 291 ~~~~~i~v~~~--v~~~~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~ 346 (396)
+++.+|+++.+ +.+++.+. +.+ .+ + +++++|.||+|+|++||+..+ ++ . ..+..
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~-~-~gi~~ 441 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD-K-LKIQM 441 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch-h-cCCcc
Confidence 34578998888 77776432 332 21 1 378999999999999999655 23 2 23322
Q ss_pred CCCCcCCCCCCCccC------CCceEEEeccccccc---CchHHHHHHHHHHhhh
Q 016069 347 DDGIPKQSYPNHWKG------KNGLYCVGLSRKGLY---GAAADAQNIADHINSI 392 (396)
Q Consensus 347 ~~g~~~~~~~~~~~~------~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~~~ 392 (396)
++|++.+|.. +.|+ .|+|||+|||++.+. .|..||+.+|++|...
T Consensus 442 ~~G~I~VDe~-lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 442 KRGFVSVDEH-LRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred cCCEEeECCC-CCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 3588888844 4443 699999999987633 8889999999999764
No 54
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=5.8e-30 Score=245.64 Aligned_cols=277 Identities=19% Similarity=0.200 Sum_probs=190.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+... . +.+....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999998888764421 0 11112235566
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
+..+.+.++++++ +.++.+. .. +...+ ..+.||+||+|||. ..++.+.++|.+..
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~---------~~~~~d~vvlAtGa-~~~~~~~i~G~~~~--- 249 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVG--------RD--ITLDE---------LRAGYDAVFIGTGA-GLPRFLGIPGENLG--- 249 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEEC--------Cc--cCHHH---------HHhhCCEEEEccCC-CCCCCCCCCCccCC---
Confidence 6666667777665 6666651 11 22222 23679999999995 24666677776431
Q ss_pred CCCCcceeeccCCCC--------CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhhHHHHHHhh
Q 016069 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGLVLLR 236 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~--------~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~~~~~ 236 (396)
.+++..++.. .....+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|....
T Consensus 250 -----gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-------- 316 (457)
T PRK11749 250 -----GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-------- 316 (457)
T ss_pred -----CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH--------
Confidence 1222211110 111248999999999999999999999987 899999876323222111
Q ss_pred cCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe-----
Q 016069 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----- 309 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~----- 309 (396)
..+.+++.+|+++.+ +.++..+.
T Consensus 317 --------------------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~ 346 (457)
T PRK11749 317 --------------------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTG 346 (457)
T ss_pred --------------------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEE
Confidence 123345567777765 66664332
Q ss_pred EEec-------------------CCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEec
Q 016069 310 VIFE-------------------NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGL 370 (396)
Q Consensus 310 v~~~-------------------~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd 370 (396)
|.+. +++++++|.||+|+|++|+...+.. .....++++|.+.++...+.|+.|+|||+||
T Consensus 347 v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 347 VEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 4432 2347899999999999999743332 2234467789998885567889999999999
Q ss_pred cccc---ccCchHHHHHHHHHHhhhcCC
Q 016069 371 SRKG---LYGAAADAQNIADHINSILSP 395 (396)
Q Consensus 371 ~~~~---~~~a~~~a~~~a~~i~~~l~~ 395 (396)
++.. ...|+.+|+.+|.+|.+.|..
T Consensus 426 ~~~~~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 426 IVTGAATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9865 348999999999999988753
No 55
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.2e-29 Score=256.40 Aligned_cols=279 Identities=19% Similarity=0.214 Sum_probs=194.4
Q ss_pred EEEECCChHHHHHHHHHHhc---CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 10 VIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 10 vvIIG~G~aGl~~A~~L~~~---g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
|+|||+|+||+++|.+|++. +.+|+|||+.+..+ |....+. . ......+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L~--~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILLS--S------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------ccccccc--H------------HHCCCCCHHHccCC
Confidence 68999999999999999875 46899999988543 2111110 0 00111122333323
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+..++.+++. +.++.|++++... ..|.+.++ .++.||+||+||| +.|+.|++||.+..
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g--------~~~~yD~LVlATG--s~p~~p~ipG~~~~---- 119 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG--------RTLSYDKLILATG--SYPFILPIPGADKK---- 119 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC--------cEeeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence 334455667666 8899999998753 34777665 6799999999999 78999999987643
Q ss_pred CCCcceeeccCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh-hhHHHHHHhhcCCh
Q 016069 167 TGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYVPC 240 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~-----~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~~~ 240 (396)
.++......+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++++. +......
T Consensus 120 ----~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~------- 187 (785)
T TIGR02374 120 ----GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRL------- 187 (785)
T ss_pred ----CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHH-------
Confidence 223222211111 1136899999999999999999999999999999888 444432 2211111
Q ss_pred hhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC----eEEecC
Q 016069 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFEN 314 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~----~v~~~~ 314 (396)
+.+.+++.+|+++.+ ++++..+ .+.++|
T Consensus 188 ----------------------------------------------l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d 221 (785)
T TIGR02374 188 ----------------------------------------------LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD 221 (785)
T ss_pred ----------------------------------------------HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC
Confidence 235667789999887 7777643 478899
Q ss_pred CcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------ccCchHHHHHHHH
Q 016069 315 GHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIAD 387 (396)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~~~a~ 387 (396)
|+++++|.||+|+|++|++. +.. . .++... |.+++| ..+.|+.|+|||+|||+.. +..|..||+.+|.
T Consensus 222 G~~i~~D~Vi~a~G~~Pn~~-la~-~-~gl~~~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ 296 (785)
T TIGR02374 222 GSSLEADLIVMAAGIRPNDE-LAV-S-AGIKVN-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLAD 296 (785)
T ss_pred CCEEEcCEEEECCCCCcCcH-HHH-h-cCCccC-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHH
Confidence 99999999999999999995 443 2 222222 445566 3567899999999999753 2257899999999
Q ss_pred HHhhh
Q 016069 388 HINSI 392 (396)
Q Consensus 388 ~i~~~ 392 (396)
||.+.
T Consensus 297 ni~g~ 301 (785)
T TIGR02374 297 HICGV 301 (785)
T ss_pred HhcCC
Confidence 99764
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=4.7e-29 Score=254.00 Aligned_cols=277 Identities=19% Similarity=0.212 Sum_probs=186.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||||||||+||..|++.|++|+|||+.+..||.+... .+.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------IP~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------IPEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------CCCCcChHHHHH
Confidence 35899999999999999999999999999999999999875522 122333445666
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.++.+|+.. +.++.+- . .++..+. ....||.|++|||+ ..|+.+.+||.+..
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG--------~--dit~~~l--------~~~~yDAV~LAtGA-~~pr~l~IpG~dl~--- 416 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG--------K--TATLEDL--------KAAGFWKIFVGTGA-GLPTFMNVPGEHLL--- 416 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec--------c--EEeHHHh--------ccccCCEEEEeCCC-CCCCcCCCCCCcCc---
Confidence 6666677778765 6666541 1 1444432 34579999999996 36888888886532
Q ss_pred CCCCcceeeccCCC---------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHH
Q 016069 166 ATGTGEVIHSTQYK---------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (396)
Q Consensus 166 ~~~~~~~~~~~~~~---------------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (396)
| +++..++. ......+++|+|||+|.+|+|+|..+.+.|++|+++.|++...+|.....+
T Consensus 417 ----G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~ 491 (944)
T PRK12779 417 ----G-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL 491 (944)
T ss_pred ----C-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHH
Confidence 1 22211111 011235899999999999999999999999999999988643333222111
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC-
Q 016069 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 307 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~- 307 (396)
.. . .+.+|+++.. ++++..
T Consensus 492 ~~---------------------------------------------------------a-~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 492 HH---------------------------------------------------------A-LEEGINLAVLRAPREFIGD 513 (944)
T ss_pred HH---------------------------------------------------------H-HHCCCEEEeCcceEEEEec
Confidence 11 0 1122332222 222211
Q ss_pred ---------------------Ce--EEecCC--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCC
Q 016069 308 ---------------------NE--VIFENG--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGK 362 (396)
Q Consensus 308 ---------------------~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 362 (396)
++ ....+| .++++|.||+|+|+.|+.. +.....+...+++|.+.++.....|+.
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~gle~~~~G~I~vd~~~~~Ts~ 592 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEPGLKTNKWGTIEVEKGSQRTSI 592 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhcccCceECCCCCEEECCCCCccCC
Confidence 11 011123 4689999999999999873 322021234577898888855678899
Q ss_pred CceEEEeccccc---ccCchHHHHHHHHHHhhhcC
Q 016069 363 NGLYCVGLSRKG---LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 363 ~~vya~Gd~~~~---~~~a~~~a~~~a~~i~~~l~ 394 (396)
|+|||+||+..+ +..|+.+|+.+|.+|.++|.
T Consensus 593 pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 593 KGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999876 45999999999999988763
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=3.3e-28 Score=225.92 Aligned_cols=288 Identities=20% Similarity=0.210 Sum_probs=185.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
...++|+|||+|++|+++|..|++.|.+|+++|+.+.+||.+.... .. ...+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~---------------~~--------~~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI---------------PE--------FRIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC---------------cc--------cccCHHHHH
Confidence 3457999999999999999999999999999999988776543210 00 001233444
Q ss_pred HHHHHHHHhcCCcceeeeceEEEEEEE--cCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016069 85 EYLDHYVSHFNIVPSIRYQRSVESASY--DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (396)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~ 162 (396)
..++.+. +.+++. +.++.+..++. ....+.|........+ ..++||+||+|||. ..+..|++||.+..
T Consensus 73 ~~~~~l~-~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~lviAtGs-~~~~~~~ipg~~~~ 142 (352)
T PRK12770 73 EGVKELE-EAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSLEE------LVKKYDAVLIATGT-WKSRKLGIPGEDLP 142 (352)
T ss_pred HHHHHHH-hCCeEE--ecCcEEeeccccccccccccccccCCHHH------HHhhCCEEEEEeCC-CCCCcCCCCCcccc
Confidence 4444443 346554 77777755432 1111222222211111 34789999999994 15777888876532
Q ss_pred ccCCCCCcceeecc-------C--C--C---CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCc-eEEEEecCceeeehhh
Q 016069 163 CSSATGTGEVIHST-------Q--Y--K---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREM 227 (396)
Q Consensus 163 ~~~~~~~~~~~~~~-------~--~--~---~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~ 227 (396)
.++... . . . ......+++++|||+|.+|+|+|..|...|.+ |+++.|.+....+.
T Consensus 143 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~-- 212 (352)
T PRK12770 143 --------GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA-- 212 (352)
T ss_pred --------CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC--
Confidence 112111 0 0 0 11123468999999999999999999989987 99998876210000
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
.....+.+++.+|+++.+ +.++
T Consensus 213 --------------------------------------------------------~~~~~~~l~~~gi~i~~~~~v~~i 236 (352)
T PRK12770 213 --------------------------------------------------------GKYEIERLIARGVEFLELVTPVRI 236 (352)
T ss_pred --------------------------------------------------------CHHHHHHHHHcCCEEeeccCceee
Confidence 000123355566777665 5555
Q ss_pred ECCe----EEe--------------------cCCcEEeCcEEEECCCCCCCcccccccC-CCCCCCCCCCcCCCCCCCcc
Q 016069 306 RGNE----VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKQG-DDSMLNDDGIPKQSYPNHWK 360 (396)
Q Consensus 306 ~~~~----v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 360 (396)
+.++ +.+ .+++.+++|.||+|+|++|+.. +.. + .+..++++|++.+|. ...+
T Consensus 237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~-l~~-~~~g~~~~~~g~i~vd~-~~~t 313 (352)
T PRK12770 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP-FAK-ECLGIELNRKGEIVVDE-KHMT 313 (352)
T ss_pred ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch-hhh-cccCceecCCCcEeeCC-Cccc
Confidence 4321 221 1235789999999999999884 333 2 233456678887774 3557
Q ss_pred CCCceEEEeccccc---ccCchHHHHHHHHHHhhhcC
Q 016069 361 GKNGLYCVGLSRKG---LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 361 ~~~~vya~Gd~~~~---~~~a~~~a~~~a~~i~~~l~ 394 (396)
+.|+||++|||+.. +..|..+|+.+|.+|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999875 34889999999999988774
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.96 E-value=1.5e-28 Score=246.41 Aligned_cols=272 Identities=24% Similarity=0.277 Sum_probs=179.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+||||||||+++|..|+++|++|+|+|+.+..||.++.. . +.+....++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHH
Confidence 35799999999999999999999999999999998888865421 0 11111233444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.+.+.++++ +.++.+ .+.. .+. ....||+||+|||+. .+..+.++|.+.-
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~l-----------e~L--------~~~gYDaVILATGA~-~~~~l~IpG~~~g--- 647 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTV-----------EQL--------KNEGYDYVVVAIGAD-KNGGLKLEGGNQN--- 647 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEh-----------hhh--------eeccCCEEEECcCCC-CCCCCCCCCccCC---
Confidence 4445566677665 777766 2221 111 345689999999963 3455566664421
Q ss_pred CCCCcceeeccCCC------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhc--CceEEEEecCceeeehhhhHHHHHHhhc
Q 016069 166 ATGTGEVIHSTQYK------NGKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVIRSPVHVLSREMVYLGLVLLRY 237 (396)
Q Consensus 166 ~~~~~~~~~~~~~~------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g--~~v~~~~r~~~~~~p~~~~~~~~~~~~~ 237 (396)
.++..++. ......+++|+|||+|.+|+|+|..+.+.+ .+|+++.|++...+|.....+....
T Consensus 648 ------V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al--- 718 (1019)
T PRK09853 648 ------VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL--- 718 (1019)
T ss_pred ------ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH---
Confidence 22222111 111224899999999999999999998884 3899999987544444433221111
Q ss_pred CChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE---------
Q 016069 238 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--------- 306 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~--------- 306 (396)
..+|+++.. +.+++
T Consensus 719 -------------------------------------------------------eeGVe~~~~~~p~~I~~dG~l~~~~ 743 (1019)
T PRK09853 719 -------------------------------------------------------EDGVEFKELLNPESFDADGTLTCRV 743 (1019)
T ss_pred -------------------------------------------------------HcCCEEEeCCceEEEEcCCcEEEEE
Confidence 012222211 11111
Q ss_pred -------CCe----EEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc
Q 016069 307 -------GNE----VIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL 375 (396)
Q Consensus 307 -------~~~----v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 375 (396)
.++ +...++.++++|.||+|+|.+|++. ++. ..+...+++|++.++ ....|+.|+|||+||++.++
T Consensus 744 ~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnte-lle-~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp 820 (1019)
T PRK09853 744 MKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTE-LLK-ANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGP 820 (1019)
T ss_pred EEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChh-HHH-hcCccccCCCCEEeC-CCcccCCCCEEEEeccccCc
Confidence 111 2233456889999999999999985 444 323346778888886 45667899999999998653
Q ss_pred ---cCchHHHHHHHHHHhhhcC
Q 016069 376 ---YGAAADAQNIADHINSILS 394 (396)
Q Consensus 376 ---~~a~~~a~~~a~~i~~~l~ 394 (396)
..|+.+|+.+|.+|.+.+.
T Consensus 821 ~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 821 STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred hHHHHHHHHHHHHHHHHhhhcC
Confidence 4899999999999988653
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=2.3e-28 Score=247.33 Aligned_cols=276 Identities=21% Similarity=0.245 Sum_probs=182.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+||||||||+++|..|+++|++|+|+|+.+..||.+... ++. +....++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~---------~rlp~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPE---------FRLPKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCC---------CCCCHHHHH
Confidence 45799999999999999999999999999999988888765421 111 111123444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.+.++++++ +.++.+. .. ++..+. ....||.||+|||+ ..|+.+.+||.+..
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~l--------~~~~ydavvlAtGa-~~~~~l~ipG~~~~--- 541 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG--------KT--ITIEEL--------EEEGFKGIFIASGA-GLPNFMNIPGENSN--- 541 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC--------Cc--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCCCCCCC---
Confidence 4445556677665 6666541 11 333322 34679999999995 26788888886532
Q ss_pred CCCCcceeeccCCC-------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCc-eEEEEecCceeeehhhhHHH
Q 016069 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~~~~~ 231 (396)
.+++..++. ......+++++|||+|.+|+|+|..+.+.|++ |++++|++...+|....++
T Consensus 542 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~- 615 (752)
T PRK12778 542 -----GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV- 615 (752)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-
Confidence 122222110 11223479999999999999999999999987 9999988733333221110
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC--
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG-- 307 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~-- 307 (396)
+.+++.+|+++.+ +.++..
T Consensus 616 ---------------------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~ 638 (752)
T PRK12778 616 ---------------------------------------------------------KHAKEEGIEFLTLHNPIEYLADE 638 (752)
T ss_pred ---------------------------------------------------------HHHHHcCCEEEecCcceEEEECC
Confidence 1122234444333 333321
Q ss_pred C----eEEe-------------------c-CCcEEeCcEEEECCCCCCCcccccccCC-CCCCCCCCCcCCCCCCCccCC
Q 016069 308 N----EVIF-------------------E-NGHSHHFDSIVFCTGFKRSTNVWLKQGD-DSMLNDDGIPKQSYPNHWKGK 362 (396)
Q Consensus 308 ~----~v~~-------------------~-~g~~~~~D~vi~atG~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~ 362 (396)
+ ++.+ + +..++++|.||+|+|++|+.. ++. .. +..++++|.+.++.. ..|+.
T Consensus 639 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-l~~-~~~gl~~~~~G~i~vd~~-~~Ts~ 715 (752)
T PRK12778 639 KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL-VPS-SIPGLELNRKGTIVVDEE-MQSSI 715 (752)
T ss_pred CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc-ccc-cccCceECCCCCEEeCCC-CCCCC
Confidence 1 1111 1 113689999999999999984 333 21 234567788888744 47899
Q ss_pred CceEEEeccccc---ccCchHHHHHHHHHHhhhcCC
Q 016069 363 NGLYCVGLSRKG---LYGAAADAQNIADHINSILSP 395 (396)
Q Consensus 363 ~~vya~Gd~~~~---~~~a~~~a~~~a~~i~~~l~~ 395 (396)
|+|||+||++.+ +..|+.+|+.+|.+|.+.|..
T Consensus 716 ~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 716 PGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999876 348999999999999998864
No 60
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=9.7e-29 Score=212.23 Aligned_cols=190 Identities=37% Similarity=0.636 Sum_probs=135.4
Q ss_pred EEECCChHHHHHHHHHHhcCCC-eEEEecCCCCCcccccCCcCceeecccccc---ccCCCCCC---C-----CCCCCCC
Q 016069 11 IIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPF---P-----SSYPMFV 78 (396)
Q Consensus 11 vIIG~G~aGl~~A~~L~~~g~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~---~~~~~~~~---~-----~~~~~~~ 78 (396)
+|||||++|+++|..|.++|.+ ++|+|+.+.+||.|... ++...+..+..+ +.++.+.. . .+...++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 99999999999999842 222222222221 11111110 0 0124568
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g 158 (396)
+.+++.+|++++++++++.+ +++++|+++++++ +.|.|++.++ .++++|+||+|||.++.|++|.+++
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS---------EEEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccc
Confidence 89999999999999998885 9999999999986 5699999875 5789999999999988999999988
Q ss_pred ccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCce
Q 016069 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (396)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 221 (396)
..+ ...+|+.++.+...+.+++|+|||+|.+|+|++..|++.|.+|+++.|+|.|
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 222 2578999888888888999999999999999999999999999999999954
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=9e-28 Score=238.41 Aligned_cols=274 Identities=17% Similarity=0.195 Sum_probs=181.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+|||||++|+++|..|++.|++|+|+|+.+..||.++.. + +.+....++.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHHH
Confidence 5799999999999999999999999999999999888876532 1 111122344444
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+.+.++++.. ++++.+ +.+ +...+ ....||.||+|||+. .+..+.+||.+..
T Consensus 249 ~~~~l~~~Gv~i--~~~~~v-~~d---------v~~~~---------~~~~~DaVilAtGa~-~~~~~~ipG~~~~---- 302 (652)
T PRK12814 249 DIAPLRAMGAEF--RFNTVF-GRD---------ITLEE---------LQKEFDAVLLAVGAQ-KASKMGIPGEELP---- 302 (652)
T ss_pred HHHHHHHcCCEE--EeCCcc-cCc---------cCHHH---------HHhhcCEEEEEcCCC-CCCCCCCCCcCcC----
Confidence 455566677655 666643 111 22221 123589999999952 3445667775432
Q ss_pred CCCcceeeccCCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhhHHHHHHhhcCCh
Q 016069 167 TGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGLVLLRYVPC 240 (396)
Q Consensus 167 ~~~~~~~~~~~~~-----~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 240 (396)
+ ++....+. ......+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|....++...
T Consensus 303 ---g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a------- 371 (652)
T PRK12814 303 ---G-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA------- 371 (652)
T ss_pred ---C-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH-------
Confidence 1 22221111 1123358999999999999999999999986 59999988743444432221111
Q ss_pred hhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC--Ce-------
Q 016069 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE------- 309 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~--~~------- 309 (396)
.+.+|+++.+ +.++.. +.
T Consensus 372 ---------------------------------------------------~~eGV~i~~~~~~~~i~~~~~~~~v~~~~ 400 (652)
T PRK12814 372 ---------------------------------------------------LAEGVSLRELAAPVSIERSEGGLELTAIK 400 (652)
T ss_pred ---------------------------------------------------HHcCCcEEeccCcEEEEecCCeEEEEEEE
Confidence 1123333322 222211 00
Q ss_pred -------------EEecCCc--EEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 310 -------------VIFENGH--SHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 310 -------------v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
....+|+ .+++|.||+|+|..|++. ++. ..+..++++|++.++...+.|+.|+|||+||+..+
T Consensus 401 ~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~-ll~-~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g 478 (652)
T PRK12814 401 MQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP-IAE-AAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG 478 (652)
T ss_pred EEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc-ccc-ccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCC
Confidence 1111232 689999999999999985 444 32344677899988866788999999999999866
Q ss_pred c---cCchHHHHHHHHHHhhhcC
Q 016069 375 L---YGAAADAQNIADHINSILS 394 (396)
Q Consensus 375 ~---~~a~~~a~~~a~~i~~~l~ 394 (396)
+ ..|..+|+.+|.+|.+.|.
T Consensus 479 ~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 479 ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc
Confidence 3 3899999999999998875
No 62
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-27 Score=204.19 Aligned_cols=325 Identities=18% Similarity=0.218 Sum_probs=208.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEec--CCCCCccccc-------CCcCceeeccc----cccccCCCCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILER--ENCYASIWKK-------YSYDRLRLHLA----KQFCQLPHLPFPS 72 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~--~~~~gg~~~~-------~~~~~~~~~~~----~~~~~~~~~~~~~ 72 (396)
..||++|||||.+||+||++++..|.+|.++|- ..-.|-.|-. .+.|.-.++.. ..+.....+-|..
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~ 97 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV 97 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 468999999999999999999999999999982 2224555542 22222222111 1111111111111
Q ss_pred CC-CCCCCHHHHHHHHHHHHHhcCCcceeeec-eEEEEEEEcC-CCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 73 SY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQ-RSVESASYDE-ATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 73 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~~i~~~~-~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.- ..-.....+.+..++.+...++-.++..+ .+|..+..-. -.+.+++...+.. |++ +.++++.++|||| .
T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~--gk~--~~~ta~~fvIatG--~ 171 (503)
T KOG4716|consen 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKK--GKE--RFLTAENFVIATG--L 171 (503)
T ss_pred ccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCC--Cce--EEeecceEEEEec--C
Confidence 11 12345677888888888887776522322 2343332211 0123345554443 233 7899999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH
Q 016069 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (396)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (396)
+|+.|.+||..++ .+++.+....+ +.+.+.+|||+|+.|+|+|..|...|-+||++.|+ .+|..+|++
T Consensus 172 RPrYp~IpG~~Ey---------~ITSDDlFsl~-~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFDqd 239 (503)
T KOG4716|consen 172 RPRYPDIPGAKEY---------GITSDDLFSLP-YEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFDQD 239 (503)
T ss_pred CCCCCCCCCceee---------eeccccccccc-CCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eecccccHH
Confidence 9999999998887 56666665543 45889999999999999999999999999999999 688889998
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccCceeEECCe
Q 016069 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNE 309 (396)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~v~~~~~~~ 309 (396)
++..+..+|....+.+. .. ..+...+++.++.++++.. .
T Consensus 240 mae~v~~~m~~~Gikf~--------------------~~--------------~vp~~Veq~~~g~l~v~~k-------~ 278 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFL--------------------RK--------------TVPERVEQIDDGKLRVFYK-------N 278 (503)
T ss_pred HHHHHHHHHHHhCCcee--------------------ec--------------ccceeeeeccCCcEEEEee-------c
Confidence 88877554432211110 00 0000123333333333111 0
Q ss_pred EEecCCcEEeCcEEEECCCCCCCcccccccCCCCC-CC-CCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHH
Q 016069 310 VIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSM-LN-DDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQ 383 (396)
Q Consensus 310 v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~ 383 (396)
....++.+-++|.|+||+|+.+.+..+.. +..+. .+ ..|.+.++ ..+.|+.|+|||+||.... ...|.+.++
T Consensus 279 t~t~~~~~~~ydTVl~AiGR~~~~~~l~L-~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGr 356 (503)
T KOG4716|consen 279 TNTGEEGEEEYDTVLWAIGRKALTDDLNL-DNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSGR 356 (503)
T ss_pred ccccccccchhhhhhhhhccccchhhcCC-CccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhch
Confidence 11112335589999999999999977643 32333 32 45666655 5677899999999999765 448889999
Q ss_pred HHHHHHhh
Q 016069 384 NIADHINS 391 (396)
Q Consensus 384 ~~a~~i~~ 391 (396)
.+|+.+-+
T Consensus 357 lLa~Rlf~ 364 (503)
T KOG4716|consen 357 LLARRLFA 364 (503)
T ss_pred HHHHHHhc
Confidence 99887754
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=1.4e-27 Score=229.49 Aligned_cols=284 Identities=19% Similarity=0.233 Sum_probs=182.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+|||||++|+++|..|+++|++|+++|+.+..||.+... + +.+....++...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHHH
Confidence 5799999999999999999999999999999999888765421 0 111122334444
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+.+.+++++. +.++.+.. + +.... ....||.||+|||.. .++.+.++|.+..
T Consensus 199 ~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~~d~vvlAtGa~-~~~~l~ipG~~~~---- 252 (471)
T PRK12810 199 RIELMEAEGIEF--RTNVEVGK-D---------ITAEE---------LLAEYDAVFLGTGAY-KPRDLGIPGRDLD---- 252 (471)
T ss_pred HHHHHHhCCcEE--EeCCEECC-c---------CCHHH---------HHhhCCEEEEecCCC-CCCcCCCCCccCC----
Confidence 445566677665 77765521 1 11111 235789999999952 3666777775532
Q ss_pred CCCcceeeccCC-------------CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhhHHHH
Q 016069 167 TGTGEVIHSTQY-------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGL 232 (396)
Q Consensus 167 ~~~~~~~~~~~~-------------~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~ 232 (396)
+ +++..++ .......+++++|||+|.+|+|+|..+.+.|+ +|+.+.+.+ +|...... .
T Consensus 253 ---g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~-~ 324 (471)
T PRK12810 253 ---G-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNK-N 324 (471)
T ss_pred ---C-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccccc-c
Confidence 1 2221100 01123358999999999999999999999986 688554443 11110000 0
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCch-hhhhhcCCCeEEccC--ceeEEC-C
Q 016069 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAG-TCEKIKSGQIQVLPG--IESIRG-N 308 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~~~--v~~~~~-~ 308 (396)
.. .+..... ..+.+++.+|+++.+ +.++.. +
T Consensus 325 ---~~------------------------------------------~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~ 359 (471)
T PRK12810 325 ---NP------------------------------------------WPYWPMKLEVSNAHEEGVEREFNVQTKEFEGEN 359 (471)
T ss_pred ---cC------------------------------------------CcccchHHHHHHHHHcCCeEEeccCceEEEccC
Confidence 00 0000000 123344456777665 666642 2
Q ss_pred -e---EE-----ecCC---------cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEec
Q 016069 309 -E---VI-----FENG---------HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGL 370 (396)
Q Consensus 309 -~---v~-----~~~g---------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd 370 (396)
. |. +.+| .++++|.||+|+|..|+...++. ..+...+++|.+.+++..+.|+.|+|||+||
T Consensus 360 g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD 438 (471)
T PRK12810 360 GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438 (471)
T ss_pred CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCcccCCCCCEEEccc
Confidence 1 21 2222 57899999999999998655655 4334467788888764566789999999999
Q ss_pred ccccc---cCchHHHHHHHHHHhhhcC
Q 016069 371 SRKGL---YGAAADAQNIADHINSILS 394 (396)
Q Consensus 371 ~~~~~---~~a~~~a~~~a~~i~~~l~ 394 (396)
++.+. ..|..+|+.+|.+|.+.|.
T Consensus 439 ~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 439 MRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 98763 3799999999999998875
No 64
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=2.7e-27 Score=238.74 Aligned_cols=271 Identities=21% Similarity=0.254 Sum_probs=173.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+||||||||++||..|+++|++|+|+|+.+..||..... . +.+....+..+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-I-----------------------P~~rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-I-----------------------PEFRISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-c-----------------------cccCCCHHHHHH
Confidence 4799999999999999999999999999999998888764321 0 111111233344
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+.+..+++++ +.+... . +..... ....||+||+|||+. .+..+.++|....
T Consensus 593 ~ie~l~~~GVe~--~~g~~~----------d--~~ve~l--------~~~gYDaVIIATGA~-~~~~l~I~G~~~~---- 645 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCSP----------D--LTVAEL--------KNQGYKYVILAIGAW-KHGPLRLEGGGER---- 645 (1012)
T ss_pred HHHHHHhcCcEE--EEeccc----------c--eEhhhh--------hcccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence 344455566554 554210 0 111111 345689999999963 3444556654321
Q ss_pred CCCcceeeccCCC----C--CCCCCCCeEEEEcCCCCHHHHHHHHHhh-cC-ceEEEEecCceeeehhhhHHHHHHhhcC
Q 016069 167 TGTGEVIHSTQYK----N--GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (396)
Q Consensus 167 ~~~~~~~~~~~~~----~--~~~~~~~~i~VvG~G~~g~e~a~~l~~~-g~-~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (396)
.+...++. . .....+++|+|||+|.+|+|+|..+.+. |. +|+++.|+....+|.....+....
T Consensus 646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al---- 716 (1012)
T TIGR03315 646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL---- 716 (1012)
T ss_pred -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH----
Confidence 12211111 1 1123489999999999999999999887 64 799999887444444332211111
Q ss_pred ChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC---------
Q 016069 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--------- 307 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~--------- 307 (396)
+.+|+++.. +.+++.
T Consensus 717 ------------------------------------------------------eeGVe~~~~~~p~~I~~g~l~v~~~~ 742 (1012)
T TIGR03315 717 ------------------------------------------------------EDGVDFKELLSPESFEDGTLTCEVMK 742 (1012)
T ss_pred ------------------------------------------------------HcCCEEEeCCceEEEECCeEEEEEEE
Confidence 112222221 122211
Q ss_pred ------Ce--EEecCC--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccccc--
Q 016069 308 ------NE--VIFENG--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-- 375 (396)
Q Consensus 308 ------~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~-- 375 (396)
++ ....+| .++++|.||+|+|..|++. +++ ..+..++++|++.++.....|+.|+|||+||++.++
T Consensus 743 l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~-lle-~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~t 820 (1012)
T TIGR03315 743 LGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTD-LLQ-KNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPAT 820 (1012)
T ss_pred eecccCCCceeeecCCCeEEEEeCEEEEecCCcCChH-HHH-hcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccH
Confidence 11 112234 3689999999999999985 444 324446788999888555678999999999998653
Q ss_pred -cCchHHHHHHHHHHhhhc
Q 016069 376 -YGAAADAQNIADHINSIL 393 (396)
Q Consensus 376 -~~a~~~a~~~a~~i~~~l 393 (396)
..|+.+|+.+|.+|.++.
T Consensus 821 Vv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 821 IVEAIADGRKAANAILSRE 839 (1012)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 489999999999998643
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=243.02 Aligned_cols=277 Identities=18% Similarity=0.174 Sum_probs=182.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+|||||||||++|..|+++|++|+|+|+.+..||..+.. .+.+....++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------ip~~rl~~e~~~~ 485 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------IPSFRLPRDIIDR 485 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------CCccCCCHHHHHH
Confidence 5799999999999999999999999999999998887754321 1222233455566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+.+.++|+++ +.++.+ + .. ++..+.. ....||.||+|||+ ..|+.+++||.+..
T Consensus 486 ~~~~l~~~Gv~~--~~~~~v-g-------~~--~~~~~l~-------~~~~yDaViIATGa-~~pr~l~IpG~~l~---- 541 (1006)
T PRK12775 486 EVQRLVDIGVKI--ETNKVI-G-------KT--FTVPQLM-------NDKGFDAVFLGVGA-GAPTFLGIPGEFAG---- 541 (1006)
T ss_pred HHHHHHHCCCEE--EeCCcc-C-------Cc--cCHHHHh-------hccCCCEEEEecCC-CCCCCCCCCCcCCC----
Confidence 666677778765 666543 1 11 1211110 12468999999995 25788888886432
Q ss_pred CCCcceeeccCC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCc-eEEEEecCceeeehhhhHHH
Q 016069 167 TGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREMVYLG 231 (396)
Q Consensus 167 ~~~~~~~~~~~~--------------~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~~~~~ 231 (396)
.+++..++ .+.....+++|+|||+|.+|+|+|..+.++|++ |+++.|+....+|.....
T Consensus 542 ----gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-- 615 (1006)
T PRK12775 542 ----QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-- 615 (1006)
T ss_pred ----CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH--
Confidence 22332211 111223589999999999999999999999875 888887763332222111
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEEC--
Q 016069 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG-- 307 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~-- 307 (396)
.+.+++.+|+++.+ +.++..
T Consensus 616 --------------------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 616 --------------------------------------------------------IRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred --------------------------------------------------------HHHHHhCCCEEEecCCcEEEEeCC
Confidence 11223344554433 333321
Q ss_pred C----eEEe-----------------cCC--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCC----CCCcc
Q 016069 308 N----EVIF-----------------ENG--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSY----PNHWK 360 (396)
Q Consensus 308 ~----~v~~-----------------~~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~ 360 (396)
+ ++.+ .+| .++++|.||+|+|+.||.. ++....+..++++|.+.++. ..+.|
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 1 1111 122 3689999999999999984 33301123456778877774 35678
Q ss_pred CCCceEEEeccccc---ccCchHHHHHHHHHHhhhcC
Q 016069 361 GKNGLYCVGLSRKG---LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 361 ~~~~vya~Gd~~~~---~~~a~~~a~~~a~~i~~~l~ 394 (396)
+.|+|||+||+..+ +..|+.+|+.+|.+|...|.
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999876 34899999999999998875
No 66
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=5e-27 Score=234.14 Aligned_cols=276 Identities=17% Similarity=0.218 Sum_probs=181.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+||||||+|+++|..|++.|++|+|+|+.+.+||.+... . +.+....++..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999888875532 0 11111234444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.++++|+++ +.++.|.. . +...+ ....||.|++|+|++ .+..+.++|.+..
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~--------~--i~~~~---------~~~~~DavilAtGa~-~~~~l~i~g~~~~--- 436 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK--------D--ISLES---------LLEDYDAVFVGVGTY-RSMKAGLPNEDAP--- 436 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC--------c--CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCCCC---
Confidence 4455566777665 77776520 0 11111 224689999999963 3444556654431
Q ss_pred CCCCcceeec--------------cCCCC--CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhh
Q 016069 166 ATGTGEVIHS--------------TQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 166 ~~~~~~~~~~--------------~~~~~--~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~ 228 (396)
| +++. ..... .....+++++|||+|.+|+|+|..+.++|+ +|+++.|++...+|....
T Consensus 437 ----G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~ 511 (654)
T PRK12769 437 ----G-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511 (654)
T ss_pred ----C-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence 1 1110 00100 012357899999999999999999999986 699999887433333322
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
. .+.+++.+|+++.+ +.++.
T Consensus 512 e----------------------------------------------------------~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 512 E----------------------------------------------------------VKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred H----------------------------------------------------------HHHHHHcCCeEEeccCcEEEE
Confidence 1 12223344444433 33332
Q ss_pred --CC----eEEe---------c---------CC--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCC---C
Q 016069 307 --GN----EVIF---------E---------NG--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYP---N 357 (396)
Q Consensus 307 --~~----~v~~---------~---------~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~ 357 (396)
++ +|.+ . .| .++++|.||+|+|+.|+...++. ..+..++++|.+.++.. .
T Consensus 534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~ 612 (654)
T PRK12769 534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE-SHGVTVDKWGRIIADVESQYR 612 (654)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-ccCCcCCCCCCEEeCCCcccC
Confidence 11 1121 1 12 26899999999999998655555 43445678888877642 3
Q ss_pred CccCCCceEEEecccccc---cCchHHHHHHHHHHhhhcC
Q 016069 358 HWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINSILS 394 (396)
Q Consensus 358 ~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~ 394 (396)
+.|+.|+|||+||+..+. ..|+.+|+.+|.+|.+.|.
T Consensus 613 ~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999998764 4799999999999998875
No 67
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=7.3e-27 Score=223.73 Aligned_cols=276 Identities=17% Similarity=0.217 Sum_probs=182.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||||++|+++|..|+++|++|+++|+.+..||.++.. + +.+....++..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 35799999999999999999999999999999999888865421 0 11112234555
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.++++|++. +.++.|.. . +...+ ....||.||+|||.. .+..+.++|.+..
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~---------~~~~~D~vilAtGa~-~~~~~~i~g~~~~--- 250 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR--------D--ISLDD---------LLEDYDAVFLGVGTY-RSMRGGLPGEDAP--- 250 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC--------c--cCHHH---------HHhcCCEEEEEeCCC-CCCcCCCCCcCCC---
Confidence 5666677788776 77776621 0 11111 234689999999952 2234556665432
Q ss_pred CCCCcceeecc-----------CC---CC--CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhh
Q 016069 166 ATGTGEVIHST-----------QY---KN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 166 ~~~~~~~~~~~-----------~~---~~--~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~ 228 (396)
+ +++.. .. .. .....+++++|+|+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 251 ----g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~ 325 (467)
T TIGR01318 251 ----G-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR 325 (467)
T ss_pred ----C-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence 1 11110 00 00 112347999999999999999999999985 799999987433433322
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
.+ +.+++.+|+++.+ +.++.
T Consensus 326 e~----------------------------------------------------------~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 326 EV----------------------------------------------------------ANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred HH----------------------------------------------------------HHHHhcCCEEEecCCcEEEE
Confidence 11 1122334554444 44442
Q ss_pred C--Ce----EEe--------------------cCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCC---CC
Q 016069 307 G--NE----VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSY---PN 357 (396)
Q Consensus 307 ~--~~----v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~ 357 (396)
. ++ +.+ .+...+++|.||+|+|++|+...++. ......+++|.+.++. ..
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~-~~gl~~~~~g~i~vd~~~~~~ 426 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLA-GHGITLDSWGRIITGDVSYLP 426 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccc-ccCccCCCCCCEEeCCccccC
Confidence 1 11 111 11246899999999999998645555 3234466778887763 34
Q ss_pred CccCCCceEEEecccccc---cCchHHHHHHHHHHhhhcC
Q 016069 358 HWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINSILS 394 (396)
Q Consensus 358 ~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~ 394 (396)
..|+.|+||++||+.... ..|+.+|+.+|.+|...|.
T Consensus 427 ~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999998764 4799999999999988763
No 68
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=213.23 Aligned_cols=264 Identities=24% Similarity=0.316 Sum_probs=193.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
...++|||+|++|..|+..+++.+. +++++-+...+. |...++ + .+.. .....+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~L--s-------~~~~-------~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRARL--S-------KFLL-------TVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchhc--c-------ccee-------ecccccc
Confidence 3589999999999999999999876 788887665321 211111 0 0000 0111111
Q ss_pred HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
....++.+..+++. ++++.|+.+|... .. |.+.++ +.+.|++++|||| +.+++|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~--K~--l~~~~G--------e~~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS--KT--LVLGNG--------ETLKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc--cE--EEeCCC--------ceeecceEEEeec--CccccCCCCCcccc--
Confidence 22223456668777 9999999999875 44 888876 7899999999999 78999999998743
Q ss_pred CCCCCcceeeccCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCC
Q 016069 165 SATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (396)
.+....+..+.. .....+|+++|+|..|+|++..|...+.+||++++.+ +.+|+...
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~----------- 254 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG----------- 254 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh-----------
Confidence 333333332211 1137789999999999999999999999999999999 67665422
Q ss_pred hhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC------eEE
Q 016069 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------EVI 311 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~------~v~ 311 (396)
+.+.+.+.+-+++.+|+++.+ +.+++++ .|.
T Consensus 255 -----------------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~ 293 (478)
T KOG1336|consen 255 -----------------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK 293 (478)
T ss_pred -----------------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE
Confidence 112222356678889999887 7777655 389
Q ss_pred ecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 312 FENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 312 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
+.||+++++|+||+++|.+|+++. ++ . +..+++.|.+.++ ....++.|||||+||++..
T Consensus 294 l~dg~~l~adlvv~GiG~~p~t~~-~~-~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 294 LKDGKTLEADLVVVGIGIKPNTSF-LE-K-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred eccCCEeccCeEEEeecccccccc-cc-c-cceecccCCEeeh-hceeeccCCcccccceeec
Confidence 999999999999999999999954 44 2 6678889999988 5566779999999999765
No 69
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.95 E-value=2.3e-26 Score=204.29 Aligned_cols=299 Identities=16% Similarity=0.177 Sum_probs=197.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCC-CCCCCCCCCCHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLP-FPSSYPMFVSRAQFIE 85 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (396)
+++|||+|+|++|.+++..|-..-++|++|++++.+- ..| .|....+-+....+.+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFl-----------------------FTPLLpS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFL-----------------------FTPLLPSTTVGTVELRSIVE 111 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceE-----------------------EeeccCCccccceeehhhhh
Confidence 5799999999999999999999899999999987321 111 1111112223344555
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
-.+..+...+-.+ -+++++.++++++. ....+......+...+ ..+.|||||+|+| ..++.+.+||..+++..
T Consensus 112 PIr~i~r~k~~~~-~y~eAec~~iDp~~--k~V~~~s~t~~~~~~e--~~i~YDyLViA~G--A~~~TFgipGV~e~~~F 184 (491)
T KOG2495|consen 112 PIRAIARKKNGEV-KYLEAECTKIDPDN--KKVHCRSLTADSSDKE--FVIGYDYLVIAVG--AEPNTFGIPGVEENAHF 184 (491)
T ss_pred hHHHHhhccCCCc-eEEecccEeecccc--cEEEEeeeccCCCcce--eeecccEEEEecc--CCCCCCCCCchhhchhh
Confidence 5555544432111 16788888888865 4433332222211122 6789999999999 78999999998776432
Q ss_pred CCCCcce-------eecc---CCCCC---CCCCCCeEEEEcCCCCHHHHHHHHHhhc--------------CceEEEEec
Q 016069 166 ATGTGEV-------IHST---QYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHA--------------AKTSLVIRS 218 (396)
Q Consensus 166 ~~~~~~~-------~~~~---~~~~~---~~~~~~~i~VvG~G~~g~e~a~~l~~~g--------------~~v~~~~r~ 218 (396)
++-.... ++.. +.... +..+--+++|||||++|+|+|.+|...- -+||++.-.
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 2221110 1110 11111 1112346999999999999999999641 257888777
Q ss_pred CceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEE
Q 016069 219 PVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQV 298 (396)
Q Consensus 219 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 298 (396)
| ..|+.++..+...+ .+.+.+.+|++
T Consensus 265 d-~iL~mFdkrl~~ya-----------------------------------------------------e~~f~~~~I~~ 290 (491)
T KOG2495|consen 265 D-HILNMFDKRLVEYA-----------------------------------------------------ENQFVRDGIDL 290 (491)
T ss_pred h-hHHHHHHHHHHHHH-----------------------------------------------------HHHhhhcccee
Confidence 6 45555554333332 35667789999
Q ss_pred ccC--ceeEECCeEEecCC----cEEeCcEEEECCCCCCCcccccccCCCCCCCCCC--CcCCCCCCCccCCCceEEEec
Q 016069 299 LPG--IESIRGNEVIFENG----HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDG--IPKQSYPNHWKGKNGLYCVGL 370 (396)
Q Consensus 299 ~~~--v~~~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~vya~Gd 370 (396)
..+ |..++++.++.+.+ +++++-.++|+||..|.+ +.. .....+++.+ .+.+|...+..+.+||||+||
T Consensus 291 ~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k-~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGD 367 (491)
T KOG2495|consen 291 DTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIK-DLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGD 367 (491)
T ss_pred ecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhh-hHhhcCCccCceeeeeeceeeccCcCceEEecc
Confidence 988 88888888777655 688999999999999866 222 1122344444 556666677889999999999
Q ss_pred cccc------ccCchHHHHHHHHHHhhh
Q 016069 371 SRKG------LYGAAADAQNIADHINSI 392 (396)
Q Consensus 371 ~~~~------~~~a~~~a~~~a~~i~~~ 392 (396)
|+.. ...|.+||.++|+++...
T Consensus 368 ca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 368 CADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 9832 238999999999999764
No 70
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.94 E-value=8.1e-26 Score=224.45 Aligned_cols=277 Identities=15% Similarity=0.164 Sum_probs=181.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||||++|+++|..|+++|++|+++|+.+..||.|..... . +....++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip---------------~---------~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP---------------P---------FKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC---------------c---------ccCCHHHHH
Confidence 3589999999999999999999999999999999999987663211 1 111134444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.+..+|++. ++++.+.. . +...+ ....||.|++|+|+. .+..+.++|.+..
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~---------l~~~~DaV~latGa~-~~~~~~i~g~~~~--- 419 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR--------D--ITFSD---------LTSEYDAVFIGVGTY-GMMRADLPHEDAP--- 419 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC--------c--CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCccC---
Confidence 4455667778765 77776521 0 11111 234689999999963 3444556665431
Q ss_pred CCCCcceeec-----------cCCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhh
Q 016069 166 ATGTGEVIHS-----------TQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMV 228 (396)
Q Consensus 166 ~~~~~~~~~~-----------~~~~-----~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~ 228 (396)
| .++. .... ......+++++|+|+|.+|+|++..+.+.|+ +||++.|++...+|....
T Consensus 420 ----g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~ 494 (639)
T PRK12809 420 ----G-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK 494 (639)
T ss_pred ----C-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 1 1110 0000 0122357999999999999999999999985 799999886433443322
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
++.. .++.+|+++.+ +.++.
T Consensus 495 e~~~----------------------------------------------------------a~~eGv~~~~~~~~~~i~ 516 (639)
T PRK12809 495 EVVN----------------------------------------------------------AREEGVEFQFNVQPQYIA 516 (639)
T ss_pred HHHH----------------------------------------------------------HHHcCCeEEeccCCEEEE
Confidence 1111 11223333333 33332
Q ss_pred C--C----eEE------------------e--cCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCC---C
Q 016069 307 G--N----EVI------------------F--ENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYP---N 357 (396)
Q Consensus 307 ~--~----~v~------------------~--~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~ 357 (396)
. + ++. . .+..++++|.||+|+|+.|+...++. ..+..++++|.+.++.. .
T Consensus 517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~ 595 (639)
T PRK12809 517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQ-GSGIKLDKWGLIQTGDVGYLP 595 (639)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccc-ccCcccCCCCCEEeCCCcccC
Confidence 1 0 011 1 11236899999999999997655555 43445677888777632 3
Q ss_pred CccCCCceEEEecccccc---cCchHHHHHHHHHHhhhcCC
Q 016069 358 HWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINSILSP 395 (396)
Q Consensus 358 ~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~~ 395 (396)
+.|+.|+|||+||+..+. ..|+.+|+.+|.+|...|..
T Consensus 596 ~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999998763 47999999999999998764
No 71
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=6.5e-26 Score=198.22 Aligned_cols=313 Identities=15% Similarity=0.155 Sum_probs=196.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc-ccCCcCceeeccccccccCCCC-CCC----CCCCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFCQLPHL-PFP----SSYPMFVS 79 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~ 79 (396)
..+|++|||+||+|..+|.+.++.|++.+.+|++..+||+. +..+.|+-.+--.+.+|..... .+. .-.+.-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 35999999999999999999999999999999999999854 4455544333222222222111 000 00011123
Q ss_pred HHHHHHHHHHHHHhc--CCcceeeeceEEEEEE---EcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 80 RAQFIEYLDHYVSHF--NIVPSIRYQRSVESAS---YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~--~~~~~~~~~~~v~~i~---~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
.+.+++...+.++++ ++.. .+-..+|+.+. .-.+.....+...++.. ..+.++++|+||| |. .+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~-lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~------~ii~aKnIiiATG--Se--V~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIEN-LFKKNKVTYVKGFGSFLDPNKVSVKKIDGED------QIIKAKNIIIATG--SE--VT 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHH-HhhhcCeEEEeeeEeecCCceEEEeccCCCc------eEEeeeeEEEEeC--Cc--cC
Confidence 444444443333332 1110 01111222111 10111444455555543 8899999999999 52 13
Q ss_pred CCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHH
Q 016069 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVL 234 (396)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~ 234 (396)
++||..-- ...++.+..-...... +++++|+|+|.+|+|+..-..++|.+||+++-.+ ...+..|.++++.+
T Consensus 187 ~~PGI~ID------ekkIVSStgALsL~~v-Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~~ 258 (506)
T KOG1335|consen 187 PFPGITID------EKKIVSSTGALSLKEV-PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKAF 258 (506)
T ss_pred CCCCeEec------CceEEecCCccchhhC-cceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHHH
Confidence 34454321 2234555444444443 9999999999999999999999999999998777 45555555555544
Q ss_pred hhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe---
Q 016069 235 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--- 309 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~--- 309 (396)
.+.+.+.+++.+.+ +...+.++
T Consensus 259 -----------------------------------------------------qr~L~kQgikF~l~tkv~~a~~~~dg~ 285 (506)
T KOG1335|consen 259 -----------------------------------------------------QRVLQKQGIKFKLGTKVTSATRNGDGP 285 (506)
T ss_pred -----------------------------------------------------HHHHHhcCceeEeccEEEEeeccCCCc
Confidence 33455567777766 55554431
Q ss_pred --EEecC---C--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc---Cch
Q 016069 310 --VIFEN---G--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAA 379 (396)
Q Consensus 310 --v~~~~---g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 379 (396)
+.+++ + ++++||.+++|+|++|-+..+.....+...|++|++.++ ....|..|+||++||++.+++ -|.
T Consensus 286 v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAe 364 (506)
T KOG1335|consen 286 VEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAE 364 (506)
T ss_pred eEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhh
Confidence 33332 2 578999999999999998766331323346888888777 344578999999999999977 555
Q ss_pred HHHHHHHHHHhh
Q 016069 380 ADAQNIADHINS 391 (396)
Q Consensus 380 ~~a~~~a~~i~~ 391 (396)
.+|..+.+.|..
T Consensus 365 eegI~~VE~i~g 376 (506)
T KOG1335|consen 365 EEGIAAVEGIAG 376 (506)
T ss_pred hhchhheeeecc
Confidence 666666665544
No 72
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.94 E-value=1.2e-25 Score=214.73 Aligned_cols=274 Identities=18% Similarity=0.275 Sum_probs=182.1
Q ss_pred HHHHHHHhc--CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCC-HHHHHHH-HHHHHHhcCC
Q 016069 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS-RAQFIEY-LDHYVSHFNI 96 (396)
Q Consensus 21 ~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~ 96 (396)
++|..|++. +.+|+|||+++.+.- . +. .. +........ ..++..+ .+.+..++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~--~-----------~~------~l--~~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF--A-----------NC------GL--PYVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE--E-----------cC------CC--CeEeccccCCHHHcccCCHHHHHHhcCC
Confidence 468888876 468999999884320 0 00 00 000011111 2222333 2344466777
Q ss_pred cceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEE--eCEEEEeecCCCCCCCCCCCCccccccCCCCCcceee
Q 016069 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS--GRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIH 174 (396)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~--~d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~ 174 (396)
++ +.+++|++++..+ +.+.+....+ + ..++ ||+||+||| +.|+.|.++|.+.. ..++
T Consensus 60 ~~--~~~~~V~~id~~~--~~v~~~~~~~-~------~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--------~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--QTVVVRNNKT-N------ETYEESYDYLILSPG--ASPIVPNIEGINLD--------IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--CEEEEEECCC-C------CEEecCCCEEEECCC--CCCCCCCCCCcCCC--------CEEE
Confidence 65 7899999998754 5544433211 1 4566 999999999 78888888886521 1222
Q ss_pred ccCCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHH
Q 016069 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLM 247 (396)
Q Consensus 175 ~~~~~~~-------~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 247 (396)
.....+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+....+..+.++..
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~--------------- 183 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQ--------------- 183 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHH---------------
Confidence 2221110 113478999999999999999999999999999999873212222221111
Q ss_pred HHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe--EEecCCcEEeCcEE
Q 016069 248 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--VIFENGHSHHFDSI 323 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~--v~~~~g~~~~~D~v 323 (396)
.+.+.+++.+|+++.+ +.+++.++ +.+.+|+++++|.+
T Consensus 184 --------------------------------------~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~v 225 (427)
T TIGR03385 184 --------------------------------------IVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMV 225 (427)
T ss_pred --------------------------------------HHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEE
Confidence 1235567778999877 88887654 36778999999999
Q ss_pred EECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------------ccCchHHHHHHHHHHh
Q 016069 324 VFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAADAQNIADHIN 390 (396)
Q Consensus 324 i~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~a~~~a~~i~ 390 (396)
|+|+|++|+.. ++. ..+...+++|++.+|. .+.|+.|+|||+|||+.. ...|.+||+.+|+||.
T Consensus 226 i~a~G~~p~~~-~l~-~~gl~~~~~G~i~vd~-~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 226 ILATGIKPNSE-LAK-DSGLKLGETGAIWVNE-KFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred EECCCccCCHH-HHH-hcCcccCCCCCEEECC-CcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 99999999985 444 3234467788888874 456789999999999752 2378899999999997
Q ss_pred hh
Q 016069 391 SI 392 (396)
Q Consensus 391 ~~ 392 (396)
+.
T Consensus 303 g~ 304 (427)
T TIGR03385 303 GN 304 (427)
T ss_pred CC
Confidence 63
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-25 Score=192.02 Aligned_cols=270 Identities=19% Similarity=0.299 Sum_probs=202.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..|||+||||||||.++|...+++|++.-++-. ++||+-... +...++- + -.+..+.++..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT-------------~~IENfI---s-v~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDT-------------MGIENFI---S-VPETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccc-------------cchhhee---c-cccccchHHHH
Confidence 469999999999999999999999998777643 455532211 0111110 0 11346678889
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCC-CCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
.++...+++.+++ ....+.+++.+... .+.+.|++.++ ..++++.+|+||| .+.+-..+||.++|
T Consensus 271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG--------avLkaktvIlstG--ArWRn~nvPGE~e~-- 336 (520)
T COG3634 271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG--------AVLKARTVILATG--ARWRNMNVPGEDEY-- 336 (520)
T ss_pred HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC--------ceeccceEEEecC--cchhcCCCCchHHH--
Confidence 9999999998776 77777777777432 35678999987 7799999999999 45555678899998
Q ss_pred CCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHH
Q 016069 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVD 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 244 (396)
......+|..++.+-+.+|+++|||||.+|+|.|..|+..-.+||++.-.+. ... +
T Consensus 337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-----LkA---------------D 392 (520)
T COG3634 337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-----LKA---------------D 392 (520)
T ss_pred ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh-----hhh---------------H
Confidence 7778888999999999999999999999999999999999999999965541 100 0
Q ss_pred HHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhh-cCCCeEEccC--ceeEECC-----eEEecC--
Q 016069 245 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI-KSGQIQVLPG--IESIRGN-----EVIFEN-- 314 (396)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~~~--v~~~~~~-----~v~~~~-- 314 (396)
. -+.+.+ .-.++.++++ .+++.++ ++.+.|
T Consensus 393 ~----------------------------------------VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~ 432 (520)
T COG3634 393 A----------------------------------------VLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRV 432 (520)
T ss_pred H----------------------------------------HHHHHHhcCCCcEEEecceeeEEecCCceecceEEEecc
Confidence 0 011222 2257888877 6777665 355543
Q ss_pred -Cc--EEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccccc
Q 016069 315 -GH--SHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY 376 (396)
Q Consensus 315 -g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~ 376 (396)
|+ .++-+-|++-+|.-||+ .|++ + ...+++.|.++++ ....|+.|+|||+|||+..++
T Consensus 433 sge~~~l~LeGvFVqIGL~PNT-~WLk-g-~vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 433 SGEEHHLELEGVFVQIGLLPNT-EWLK-G-AVELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred CCceeEEEeeeeEEEEecccCh-hHhh-c-hhhcCcCccEEEe-cCCCcCCCceeecCcccCCcc
Confidence 43 34667799999999999 7988 5 4678899999887 667799999999999987754
No 74
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.93 E-value=2.4e-25 Score=210.56 Aligned_cols=284 Identities=20% Similarity=0.215 Sum_probs=205.5
Q ss_pred CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
..+++|||-|++|..+..++.+ .-+.|+++...++.. |.+.+++.- .+.--+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------------l~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------------LAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------------cCCCccHHHH
Confidence 3689999999999999999998 356899998877543 544444310 0111133344
Q ss_pred HHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016069 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (396)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~ 163 (396)
.-.-.++++++++.. +.+.+|+.++.+. .. |+++.+ .++.||.+|+||| |.|.++++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~--k~--V~t~~g--------~~~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRAN--KV--VTTDAG--------RTVSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCc--ce--EEccCC--------cEeecceeEEecC--ccccccCCCCCCCC-
Confidence 333455677778776 9999999999865 43 777776 7899999999999 99999999998865
Q ss_pred cCCCCCcceeeccCCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcC
Q 016069 164 SSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-----~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (396)
.++....+.+.. ....++.+|||+|..|+|+|..|...|-+++|++-.+ +.+-+-.+.....+
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~l---- 192 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRL---- 192 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHH----
Confidence 334333332211 1225668999999999999999999999999998777 33222222111111
Q ss_pred ChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE----CCeEEe
Q 016069 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR----GNEVIF 312 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~----~~~v~~ 312 (396)
+...+++.+++++.+ .+++. ..++.+
T Consensus 193 ------------------------------------------------L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~ 224 (793)
T COG1251 193 ------------------------------------------------LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRF 224 (793)
T ss_pred ------------------------------------------------HHHHHHhhcceeecccchhhhhcCcceeeEee
Confidence 245667778887776 33333 236899
Q ss_pred cCCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc-------ccCchHHHHHH
Q 016069 313 ENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNI 385 (396)
Q Consensus 313 ~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~~~ 385 (396)
+||+.+++|.|++|+|++||.. +.. . .++-.++|.++.+ ++.|+.|+|||+|+|+.. +..+..||+.+
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~e-la~-~-aGlavnrGIvvnd--~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~ 299 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDE-LAK-E-AGLAVNRGIVVND--YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVL 299 (793)
T ss_pred cCCCcccceeEEEecccccccH-hHH-h-cCcCcCCCeeecc--cccccCCCeeehhhHHHhcCccceehhHHHHHHHHH
Confidence 9999999999999999999994 433 2 3444444777766 899999999999999643 55889999999
Q ss_pred HHHHhhhc
Q 016069 386 ADHINSIL 393 (396)
Q Consensus 386 a~~i~~~l 393 (396)
|+|+....
T Consensus 300 a~hl~~~~ 307 (793)
T COG1251 300 ADHLCGGE 307 (793)
T ss_pred HHHhccCc
Confidence 99997653
No 75
>PRK13984 putative oxidoreductase; Provisional
Probab=99.93 E-value=6.1e-25 Score=218.01 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=172.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..++|+|||+|++|+++|..|.++|++|+++|+.+..||.+... + +.+....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 35789999999999999999999999999999998887754421 1 11111233444
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
...+.++++++.. +.++.|.. + +.... ....||+||+|||. ..++.++++|.+..
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~yD~vilAtGa-~~~r~l~i~G~~~~--- 392 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK-D---------IPLEE---------LREKHDAVFLSTGF-TLGRSTRIPGTDHP--- 392 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC-c---------CCHHH---------HHhcCCEEEEEcCc-CCCccCCCCCcCCc---
Confidence 4445566677665 77776621 0 11111 23579999999995 24677778886532
Q ss_pred CCCCcceeeccCCC---------CC-CCCCCCeEEEEcCCCCHHHHHHHHHhhcC------ceEEEEec-Cceeeehhhh
Q 016069 166 ATGTGEVIHSTQYK---------NG-KPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVIRS-PVHVLSREMV 228 (396)
Q Consensus 166 ~~~~~~~~~~~~~~---------~~-~~~~~~~i~VvG~G~~g~e~a~~l~~~g~------~v~~~~r~-~~~~~p~~~~ 228 (396)
.+++..++. .. ....+++++|||+|.+|+|+|..+.+++. +|+++... ....+|....
T Consensus 393 -----gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~ 467 (604)
T PRK13984 393 -----DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME 467 (604)
T ss_pred -----CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH
Confidence 122221111 00 11236899999999999999999998753 67876432 2112222211
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE
Q 016069 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (396)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~ 306 (396)
.+.. ..+.+|+++.+ +.++.
T Consensus 468 e~~~----------------------------------------------------------~~~~GV~i~~~~~~~~i~ 489 (604)
T PRK13984 468 EIEE----------------------------------------------------------GLEEGVVIYPGWGPMEVV 489 (604)
T ss_pred HHHH----------------------------------------------------------HHHcCCEEEeCCCCEEEE
Confidence 1110 11123333322 22221
Q ss_pred C-C----eEEe-------------------cCCcEEeCcEEEECCCCCCCcccccccCC-CCCCCCCCCcCCCCCCCccC
Q 016069 307 G-N----EVIF-------------------ENGHSHHFDSIVFCTGFKRSTNVWLKQGD-DSMLNDDGIPKQSYPNHWKG 361 (396)
Q Consensus 307 ~-~----~v~~-------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 361 (396)
. + ++.+ .++.++++|.||+|+|++|++..+.. .. ..+..++|.+.++ ..+.|+
T Consensus 490 ~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~-~~~~~l~~~~G~i~vd-~~~~Ts 567 (604)
T PRK13984 490 IENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE-ELKSKLEFVRGRILTN-EYGQTS 567 (604)
T ss_pred ccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh-hhccCccccCCeEEeC-CCCccC
Confidence 0 0 0111 12347899999999999999854432 21 1222246778777 456789
Q ss_pred CCceEEEeccccc--ccCchHHHHHHHHHHhhhcC
Q 016069 362 KNGLYCVGLSRKG--LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 362 ~~~vya~Gd~~~~--~~~a~~~a~~~a~~i~~~l~ 394 (396)
.|+|||+||++.+ ...|+.+|+.+|.+|...|.
T Consensus 568 ~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999876 44899999999999998875
No 76
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.93 E-value=2.2e-24 Score=207.43 Aligned_cols=289 Identities=18% Similarity=0.168 Sum_probs=173.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+|||||++|+++|..|++.|++|+|+|+.+..||..... + +.+....++...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------I---------PNMKLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------C---------CCccCCHHHHHH
Confidence 4799999999999999999999999999999998877654311 1 111112334444
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..+.+++++++. +.++.+. .+ +.. +. ....||.||+|||+. .|..+.++|.+..
T Consensus 199 ~~~~~~~~Gv~~--~~~~~v~-~~---------~~~-~~--------~~~~~d~VilAtGa~-~~~~l~i~G~~~~---- 252 (485)
T TIGR01317 199 RIDLLSAEGIDF--VTNTEIG-VD---------ISA-DE--------LKEQFDAVVLAGGAT-KPRDLPIPGRELK---- 252 (485)
T ss_pred HHHHHHhCCCEE--ECCCEeC-Cc---------cCH-HH--------HHhhCCEEEEccCCC-CCCcCCCCCcCCC----
Confidence 445566677765 7777662 11 111 11 235789999999952 3777788876431
Q ss_pred CCCcceeeccCC--------C-------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhhHH
Q 016069 167 TGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYL 230 (396)
Q Consensus 167 ~~~~~~~~~~~~--------~-------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~ 230 (396)
+ ++...++ . ......+++++|||+|.+|+|+|..+.+.++ +|+++++.+. .+......
T Consensus 253 ---g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~-~~~~~~~~- 326 (485)
T TIGR01317 253 ---G-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK-PPEARAKD- 326 (485)
T ss_pred ---C-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC-Chhhcccc-
Confidence 1 1111000 0 0112358999999999999999988888875 6999988773 21110000
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEE---ccCceeEE-
Q 016069 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQV---LPGIESIR- 306 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~~~v~~~~- 306 (396)
..+|.. ...+ . ......+.++..++.+ ...+.++.
T Consensus 327 -----~~~~~~-~~~~-e----------------------------------~~~a~~e~~~~~gv~~~~~~~~~~~i~~ 365 (485)
T TIGR01317 327 -----NPWPEW-PRVY-R----------------------------------VDYAHEEAAAHYGRDPREYSILTKEFIG 365 (485)
T ss_pred -----cCCCcc-chhh-h----------------------------------hHHHHHhhhhhcCccceEEecCcEEEEE
Confidence 000000 0000 0 0000000010011100 00011111
Q ss_pred -------------------CCe---EEe--cCCcEEeCcEEEECCCCC-CCcccccccCCCCCCCCCCCcCCCCCCCccC
Q 016069 307 -------------------GNE---VIF--ENGHSHHFDSIVFCTGFK-RSTNVWLKQGDDSMLNDDGIPKQSYPNHWKG 361 (396)
Q Consensus 307 -------------------~~~---v~~--~~g~~~~~D~vi~atG~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (396)
+++ .+. .+..++++|.||+|+|.. |++. ++. ..+..++++|.+.+++..+.|+
T Consensus 366 ~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~-~~~-~~gl~~~~~G~i~~~~~~~~Ts 443 (485)
T TIGR01317 366 DDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQI-LLD-DFGVKKTRRGNISAGYDDYSTS 443 (485)
T ss_pred cCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccc-ccc-ccCcccCCCCCEEecCCCceEC
Confidence 111 111 122378999999999996 7774 444 3233456778876555677899
Q ss_pred CCceEEEeccccc---ccCchHHHHHHHHHHhhhcC
Q 016069 362 KNGLYCVGLSRKG---LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 362 ~~~vya~Gd~~~~---~~~a~~~a~~~a~~i~~~l~ 394 (396)
.|+|||+||++.+ +..|..+|+.+|.+|.+.|.
T Consensus 444 ~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 444 IPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999876 34799999999999998875
No 77
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=1.5e-24 Score=213.21 Aligned_cols=274 Identities=19% Similarity=0.261 Sum_probs=176.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
...+|+|||+||+|+++|..|+++|++|+++|+.+..||.++.. + +.+....++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------I---------PAYRLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999888865421 1 11111123333
Q ss_pred HHHHHHHhcCCcceeeeceEE-EEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 86 YLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
.-.+.+.+++++. ++++.+ .++..+ . ....||.||+|+|.. .+....+++.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~---------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q---------LEGEFDAVFVAIGAQ-LGKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H---------HHhhCCEEEEeeCCC-CCCcCCCCCCcc---
Confidence 3344566677665 666554 222110 0 122479999999953 233344555432
Q ss_pred CCCCCcceeeccCC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhc-CceEEEEecCceeeehhhhHHHHHHhhcC
Q 016069 165 SATGTGEVIHSTQY-----KNGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (396)
Q Consensus 165 ~~~~~~~~~~~~~~-----~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (396)
.+ .+....+ .......+++++|+|+|.+++|.+..+.+++ .+|+++.|.+...++.....
T Consensus 246 ----~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~--------- 311 (564)
T PRK12771 246 ----AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEE--------- 311 (564)
T ss_pred ----CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHH---------
Confidence 11 1111111 1112334899999999999999999999988 56999998873222222111
Q ss_pred ChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe-----E-
Q 016069 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE-----V- 310 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~-----v- 310 (396)
.+...+.+|+++.+ +.++..+. +
T Consensus 312 -------------------------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~ 342 (564)
T PRK12771 312 -------------------------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLR 342 (564)
T ss_pred -------------------------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEE
Confidence 11122234555443 44443221 1
Q ss_pred --Ee------c-------CC--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEecccc
Q 016069 311 --IF------E-------NG--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 373 (396)
Q Consensus 311 --~~------~-------~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 373 (396)
.+ + +| .++++|.||+|+|..|+.+ ++. ....+.+++|.+.++...+.|+.|+||++||+..
T Consensus 343 ~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-~~~-~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 343 VITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSA-GLE-SVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP 420 (564)
T ss_pred EEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchh-hhh-hccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence 11 1 22 4789999999999999874 444 2122336788998886677899999999999987
Q ss_pred c---ccCchHHHHHHHHHHhhhcC
Q 016069 374 G---LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 374 ~---~~~a~~~a~~~a~~i~~~l~ 394 (396)
+ +..|..+|+.+|.+|.+.|.
T Consensus 421 g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 421 GPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHc
Confidence 5 44899999999999988775
No 78
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.93 E-value=1.1e-25 Score=205.60 Aligned_cols=298 Identities=24% Similarity=0.357 Sum_probs=161.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCcccccCC-cCceeecccc--ccccCCCCCCCCCC--------
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLAK--QFCQLPHLPFPSSY-------- 74 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~-------- 74 (396)
.+|+++||.||++|++|..|.+.+ .++..+|+.+... |...+ .++..+.++. .+-++.+...+.++
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999876 8999999887543 77554 4555554432 22222222112111
Q ss_pred ---------CCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCC--CceEEEEeecCCCCceeeEEEEeCEEEE
Q 016069 75 ---------PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 75 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
..++++.++.+|+++.++++...+ +++.+|++|++..+. ..|+|.+.+.. |+. ..+.++.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~--g~~--~~~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSD--GDG--ETYRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETT--S-E--EEEEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecC--CCe--eEEEeCeEEE
Confidence 135799999999999999998555 999999999997633 25999986521 232 7899999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCC--CCCCCeEEEEcCCCCHHHHHHHHHhhcC--ceEEEEecC
Q 016069 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSP 219 (396)
Q Consensus 144 AtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~VvG~G~~g~e~a~~l~~~g~--~v~~~~r~~ 219 (396)
|+| ..|.+|........ ...++|+.++.... ...+++|+|||+|.||+|++..|.+.+. +|+|+.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 78888864221111 24688988775432 4458999999999999999999999975 799999999
Q ss_pred ceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccC-cCCCCCCcchhhhccCCccccCchhhhhh-cCCCeE
Q 016069 220 VHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYG-IHKPREGPFFMKAAYGKYPVIDAGTCEKI-KSGQIQ 297 (396)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 297 (396)
...|.++..+.+. ++.+..++.|..........-..+.. .......+..+. ..+...+.+.+ .+..++
T Consensus 226 -~~~~~d~s~f~ne---~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~------~iy~~lY~~~v~g~~~~~ 295 (341)
T PF13434_consen 226 -GFFPMDDSPFVNE---IFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLE------AIYDRLYEQRVSGRGRLR 295 (341)
T ss_dssp -S-EB----CCHHG---GGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHH------HHHHHHHHHHHHT---SE
T ss_pred -ccCCCccccchhh---hcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHH------HHHHHHHHHHhcCCCCeE
Confidence 6777776655443 23334333333211111000000000 111111111111 01111222333 344677
Q ss_pred EccC--ceeEE--CC-e--EEecC-----CcEEeCcEEEECCCCC
Q 016069 298 VLPG--IESIR--GN-E--VIFEN-----GHSHHFDSIVFCTGFK 330 (396)
Q Consensus 298 v~~~--v~~~~--~~-~--v~~~~-----g~~~~~D~vi~atG~~ 330 (396)
++.+ |+.++ ++ + +.+.+ ..++++|.||+||||+
T Consensus 296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 7776 66654 22 3 34443 2567999999999985
No 79
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.92 E-value=1.6e-23 Score=198.44 Aligned_cols=330 Identities=16% Similarity=0.117 Sum_probs=175.8
Q ss_pred CCeEEEECCChHHHHHHHHHHh--cCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
.++|+||||||||+++|..|++ .|++|+|||+.+..||.++.... +.+.....+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v~ 82 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNVT 82 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHHH
Confidence 5789999999999999999987 69999999999988886653210 1122334455
Q ss_pred HHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016069 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (396)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~ 164 (396)
..+.+.+...++.. +.+..+- .. ++..+ -...||.||+|+|+. .++.+.+||.+..
T Consensus 83 ~~~~~~~~~~~v~~--~~nv~vg--------~d--vtl~~---------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~-- 138 (491)
T PLN02852 83 NQFSRVATDDRVSF--FGNVTLG--------RD--VSLSE---------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP-- 138 (491)
T ss_pred HHHHHHHHHCCeEE--EcCEEEC--------cc--ccHHH---------HhhhCCEEEEecCCC-CCCCCCCCCCCCC--
Confidence 56666666655543 5554441 11 33322 234699999999952 3456677876532
Q ss_pred CCCCCcceeeccCC----------CCC--CCCCCCeEEEEcCCCCHHHHHHHHHhh--------------------c-Cc
Q 016069 165 SATGTGEVIHSTQY----------KNG--KPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-AK 211 (396)
Q Consensus 165 ~~~~~~~~~~~~~~----------~~~--~~~~~~~i~VvG~G~~g~e~a~~l~~~--------------------g-~~ 211 (396)
.++...++ ... ....+++++|||+|.+|+|+|..|.+. + .+
T Consensus 139 ------gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~ 212 (491)
T PLN02852 139 ------GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRK 212 (491)
T ss_pred ------CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCE
Confidence 12222111 000 112478999999999999999998875 4 35
Q ss_pred eEEEEecCceeeehhhhHHHHHHhh-----cC-ChhhH---------------HHHHHHHHHHHhccccccCcCCCCCCc
Q 016069 212 TSLVIRSPVHVLSREMVYLGLVLLR-----YV-PCGGV---------------DTLMVMLSRLVYGDLSKYGIHKPREGP 270 (396)
Q Consensus 212 v~~~~r~~~~~~p~~~~~~~~~~~~-----~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
|+++.|+.....+....++.....- .+ |..+. .+....+.......... ......+.
T Consensus 213 V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~--~~~~~~~v 290 (491)
T PLN02852 213 VYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCA--PSGGQREL 290 (491)
T ss_pred EEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccc--cCCCCceE
Confidence 9999999844433322222221100 00 00000 00001111110000000 00000000
Q ss_pred chhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECCe--EEecCC--cEEeCcEEEECCCCC--CCcccccccCCCC
Q 016069 271 FFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE--VIFENG--HSHHFDSIVFCTGFK--RSTNVWLKQGDDS 343 (396)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~~--v~~~~g--~~~~~D~vi~atG~~--~~~~~~~~~~~~~ 343 (396)
.+.....|..-.....-...+ .++++..+ +..-+.++ ....+| +.+++|.||.|.|++ |.....+......
T Consensus 291 ~~~f~~sP~ei~~~~~~~~~v--~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv 368 (491)
T PLN02852 291 HFVFFRNPTRFLDSGDGNGHV--AGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGV 368 (491)
T ss_pred EEEccCCCeEEEccCCCCCcE--EEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCe
Confidence 000000000000000000000 01111111 00000000 111123 368999999999998 4442112202233
Q ss_pred CCCCCCCcCCCCCCCccCCCceEEEeccccc----ccCchHHHHHHHHHHhhhcC
Q 016069 344 MLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 344 ~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~i~~~l~ 394 (396)
..+++|++.++. ...|+.|||||+||+..+ +..++.+|..++++|.+.+.
T Consensus 369 ~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 369 VPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred eECCCceEEeCC-CCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHH
Confidence 457788888763 345889999999999876 44999999999999988753
No 80
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=4e-23 Score=213.91 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=181.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
++||+||||||||+++|..|++.|.+|+|+|+.+..||.+..... .... .+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------~~~g-~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------TIDG-KPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc---------------------ccCC-ccHHHHHHH
Confidence 579999999999999999999999999999999988886643210 0011 122333333
Q ss_pred HHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEe--------ecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016069 87 LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (396)
Q Consensus 87 l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--------~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~ 157 (396)
+.+.+..+ ++.+ +.+++|.++.... ....+... .+...+.. ..+++|.||+||| +.++.|+++
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~--~~i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERL--WRIRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccccce--EEEEcCEEEEcCC--CCCcCCCCC
Confidence 33333333 3444 8888888875321 11111100 00000011 3689999999999 677888888
Q ss_pred CccccccCCCCCcceeecc---CCCC-CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCceeeehhhhHHHH
Q 016069 158 GLSSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGL 232 (396)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~ 232 (396)
|.+.. + ++... .+.. .....+++++|+|+|.+|+|+|..|++.|. .|+++.+.+. ..+
T Consensus 293 G~~~p-------g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~-~~~-------- 355 (985)
T TIGR01372 293 NNDRP-------G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD-VSP-------- 355 (985)
T ss_pred CCCCC-------C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc-hhH--------
Confidence 86542 2 22211 1111 122357999999999999999999999995 4778876651 100
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC--
Q 016069 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 308 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~-- 308 (396)
.+.+.+++.+|+++.+ +.++..+
T Consensus 356 -----------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~ 382 (985)
T TIGR01372 356 -----------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKR 382 (985)
T ss_pred -----------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCc
Confidence 0134566778998887 7777654
Q ss_pred --eEEec----CCcEEeCcEEEECCCCCCCcccccccCCCCC-CCCCCCcCCCCCCCccCCCceEEEeccccc--ccCch
Q 016069 309 --EVIFE----NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKG--LYGAA 379 (396)
Q Consensus 309 --~v~~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~--~~~a~ 379 (396)
+|.+. +++++++|.|++++|++||+..... ..... .++..... ...|+.|+||++||++.. ...|.
T Consensus 383 v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~-lg~~~~~~~~~~~~----~~~t~v~gVyaaGD~~g~~~~~~A~ 457 (985)
T TIGR01372 383 VSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ-RGGKLAWDAAIAAF----LPGDAVQGCILAGAANGLFGLAAAL 457 (985)
T ss_pred EEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh-cCCCeeeccccCce----ecCCCCCCeEEeeccCCccCHHHHH
Confidence 35554 4578899999999999999954333 21212 11111000 112568999999999865 34789
Q ss_pred HHHHHHHHHHhhhc
Q 016069 380 ADAQNIADHINSIL 393 (396)
Q Consensus 380 ~~a~~~a~~i~~~l 393 (396)
.+|+.+|..|+..+
T Consensus 458 ~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 458 ADGAAAGAAAARAA 471 (985)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999987665
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.5e-23 Score=183.80 Aligned_cols=354 Identities=21% Similarity=0.283 Sum_probs=212.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCcccccCC-cCceeeccc-----------cccccCCCCC----
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLA-----------KQFCQLPHLP---- 69 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~~gg~~~~~~-~~~~~~~~~-----------~~~~~~~~~~---- 69 (396)
.+|++.||-||+.|+.|..|..++ .++..+|+++.+. |...+ .++..+.++ ...+.|-++.
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 589999999999999999999875 6899999998654 66543 344433332 1111111110
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceE--EEEeecCCCCceeeEEEEeCEEEE
Q 016069 70 ----FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN--VKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
+-..-..++++.|+.+|+++.+.++. .+ +++.+|++|...+.+...+ +.+.++ ..++++.||+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~--------~~y~ar~lVl 151 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG--------TVYRARNLVL 151 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC--------cEEEeeeEEE
Confidence 00011235899999999999999883 44 9999999664333223333 444443 6899999999
Q ss_pred eecCCCCCCCCC-CCCccccccCCCCCcceeeccCCCCC-CCCCCC-eEEEEcCCCCHHHHHHHHHhh----cCceEEEE
Q 016069 144 ASGETSNPFTPD-IRGLSSFCSSATGTGEVIHSTQYKNG-KPYGGK-NVLVVGSGNSGMEIALDLANH----AAKTSLVI 216 (396)
Q Consensus 144 AtG~~s~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~i~VvG~G~~g~e~a~~l~~~----g~~v~~~~ 216 (396)
++| .+|.+|+ +..+. ...++|+.++... .+...+ +|.|||+|.||+|+...|... ..++.|+.
T Consensus 152 g~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wit 221 (436)
T COG3486 152 GVG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221 (436)
T ss_pred ccC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeee
Confidence 999 7999986 33332 2368998888643 333344 499999999999999999865 34589999
Q ss_pred ecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhc--CC
Q 016069 217 RSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIK--SG 294 (396)
Q Consensus 217 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 294 (396)
|++ .++|.+...+. ..++.++..+.|-.........-....++..+....... ...+...+.+.+. +.
T Consensus 222 R~~-gf~p~d~Skf~---~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti------~~Iy~~lY~~~l~~~~~ 291 (436)
T COG3486 222 RSS-GFLPMDYSKFG---LEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTI------EEIYDLLYEQSLGGRKP 291 (436)
T ss_pred ccC-CCCccccchhh---hhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHH------HHHHHHHHHHHhcCCCC
Confidence 999 56666655444 333333333333221111000000111111111111100 1122222333332 34
Q ss_pred CeEEccC--ceeEECCe---EEec-------CCcEEeCcEEEECCCCCCCcccccccCC--CCCCCCCCCcCCCCCCC--
Q 016069 295 QIQVLPG--IESIRGNE---VIFE-------NGHSHHFDSIVFCTGFKRSTNVWLKQGD--DSMLNDDGIPKQSYPNH-- 358 (396)
Q Consensus 295 ~i~v~~~--v~~~~~~~---v~~~-------~g~~~~~D~vi~atG~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~-- 358 (396)
+++++++ +..++..+ +.+. +.++++.|.||+||||....+.+++ .. ....+++|..+++.+..
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~-~l~d~l~~d~~g~l~I~~dY~v~ 370 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLE-GLADRLQWDDDGRLVIGRDYRVL 370 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhh-hHHHhhcccccCCeEecCceeee
Confidence 6777777 77777654 3332 2357899999999999988876655 31 23457777777664432
Q ss_pred cc--CCCceEEEeccccc--c-----cCchHHHHHHHHHHhhhcC
Q 016069 359 WK--GKNGLYCVGLSRKG--L-----YGAAADAQNIADHINSILS 394 (396)
Q Consensus 359 ~~--~~~~vya~Gd~~~~--~-----~~a~~~a~~~a~~i~~~l~ 394 (396)
+. ....||+.|-.... + ..+...+..+++.+.++..
T Consensus 371 ~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~ 415 (436)
T COG3486 371 WDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREK 415 (436)
T ss_pred cCCCCcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCC
Confidence 32 23469999876432 2 2444455555566655544
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=4.7e-20 Score=179.64 Aligned_cols=305 Identities=17% Similarity=0.184 Sum_probs=181.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
+.++|.|||+||+||++|-+|.+.|+.|+++|+.++.||..... .++ .-....+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ipn---------mkldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IPN---------MKLDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CCc---------cchhHHHHH
Confidence 35799999999999999999999999999999999999875532 111 111222333
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~ 165 (396)
.-.....+.|+++ ..|+++- .. +.... -.-..|.+|+|+|. ..|+-.++||.+..
T Consensus 1840 rrv~ll~~egi~f--~tn~eig--------k~--vs~d~---------l~~~~daiv~a~gs-t~prdlpv~grd~k--- 1894 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIG--------KH--VSLDE---------LKKENDAIVLATGS-TTPRDLPVPGRDLK--- 1894 (2142)
T ss_pred HHHHHHHhhCceE--Eeecccc--------cc--ccHHH---------HhhccCeEEEEeCC-CCCcCCCCCCcccc---
Confidence 3334455567765 6666651 11 22211 23467999999996 37777778876642
Q ss_pred CCCCcceeeccCC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCc-eEEEEecCc---eeeehhh
Q 016069 166 ATGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPV---HVLSREM 227 (396)
Q Consensus 166 ~~~~~~~~~~~~~--------------~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~---~~~p~~~ 227 (396)
| +....++ .......+|+++|||||.+|-++...-.++|++ |--+.--|. ...|...
T Consensus 1895 ----g-v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~np 1969 (2142)
T KOG0399|consen 1895 ----G-VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNP 1969 (2142)
T ss_pred ----c-cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCC
Confidence 1 1111111 111233589999999999999999999999875 332321110 1111111
Q ss_pred hHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeE
Q 016069 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (396)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~ 305 (396)
+.....+++ ++.-+.......-.|...|.+..++ +..-.+++++-+.- |.+-
T Consensus 1970 wpqwprvfr------vdygh~e~~~~~g~dpr~y~vltk~--------------------f~~~~~g~v~gl~~vrvew~ 2023 (2142)
T KOG0399|consen 1970 WPQWPRVFR------VDYGHAEAKEHYGSDPRTYSVLTKR--------------------FIGDDNGNVTGLETVRVEWE 2023 (2142)
T ss_pred CccCceEEE------eecchHHHHHHhCCCcceeeeeeee--------------------eeccCCCceeeEEEEEEEEE
Confidence 111111111 1122222222333333333221110 00011122221111 2221
Q ss_pred ECC--eEEec----CCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---cc
Q 016069 306 RGN--EVIFE----NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LY 376 (396)
Q Consensus 306 ~~~--~v~~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~ 376 (396)
..+ ..++. +.+.+++|+||+|+||........+ ......+.++.+.+......+.++++||+|||.++ +.
T Consensus 2024 k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~-~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvv 2102 (2142)
T KOG0399|consen 2024 KDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIE-QLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVV 2102 (2142)
T ss_pred ecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhh-hcCcccCccccccCCCccccccccceeecccccCCceEEE
Confidence 111 23442 2356799999999999977656655 43445778888887766777889999999999887 66
Q ss_pred CchHHHHHHHHHHhh
Q 016069 377 GAAADAQNIADHINS 391 (396)
Q Consensus 377 ~a~~~a~~~a~~i~~ 391 (396)
+|.+++|.+|+.+..
T Consensus 2103 wai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2103 WAIQEGRQAARQVDE 2117 (2142)
T ss_pred EEehhhhHHHHHHHH
Confidence 999999999999875
No 83
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.79 E-value=3.3e-18 Score=163.18 Aligned_cols=276 Identities=19% Similarity=0.212 Sum_probs=177.6
Q ss_pred EEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCC-CCCCHHHHHHH
Q 016069 10 VIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEY 86 (396)
Q Consensus 10 vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (396)
++|||+|++|+++|..|.+. +.+++++......... ..+.+.... .......+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY---------------------RCPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC---------------------CCccchHHhcccCCHHHhccc
Confidence 58999999999999998885 4578877766532100 000000000 00111111111
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
.... ...++.. +.++.|++++... .. +.+.+ ..+.||++++||| .+|..++ +..
T Consensus 60 ~~~~-~~~~i~~--~~~~~v~~id~~~--~~--v~~~~---------g~~~yd~LvlatG--a~~~~~~--~~~------ 113 (415)
T COG0446 60 PRFN-RATGIDV--RTGTEVTSIDPEN--KV--VLLDD---------GEIEYDYLVLATG--ARPRPPP--ISD------ 113 (415)
T ss_pred chhH-HhhCCEE--eeCCEEEEecCCC--CE--EEECC---------CcccccEEEEcCC--CcccCCC--ccc------
Confidence 1111 3345555 8899999998754 33 66655 4688999999999 6676665 111
Q ss_pred CCCcceeeccCCCCCCCC-----CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh-hHHHHHHhhcCCh
Q 016069 167 TGTGEVIHSTQYKNGKPY-----GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM-VYLGLVLLRYVPC 240 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~-----~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~-~~~~~~~~~~~~~ 240 (396)
....+........... ..++++|+|+|..|+|+|..+.+.|.+|+++...+ +.++... .++...
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~------- 183 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEE------- 183 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHH-------
Confidence 1112222222111111 15899999999999999999999999999999998 4544443 222222
Q ss_pred hhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECCe-------EE
Q 016069 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE-------VI 311 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~~-------v~ 311 (396)
+.+.++..+|+++.+ +.+++... +.
T Consensus 184 ----------------------------------------------~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~ 217 (415)
T COG0446 184 ----------------------------------------------LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVV 217 (415)
T ss_pred ----------------------------------------------HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEE
Confidence 245567777888776 77777652 57
Q ss_pred ecCCcEEeCcEEEECCCCCCCcccccccCCC-CCCCCCCCcCCCCCCCccC-CCceEEEeccccc-------------cc
Q 016069 312 FENGHSHHFDSIVFCTGFKRSTNVWLKQGDD-SMLNDDGIPKQSYPNHWKG-KNGLYCVGLSRKG-------------LY 376 (396)
Q Consensus 312 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~vya~Gd~~~~-------------~~ 376 (396)
..++..+++|.+++++|.+||. .+.. +.. .....+|.+.++ ....++ .++||++||++.. ..
T Consensus 218 ~~~~~~~~~d~~~~~~g~~p~~-~l~~-~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~ 294 (415)
T COG0446 218 GIDGEEIKADLVIIGPGERPNV-VLAN-DALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWA 294 (415)
T ss_pred EeCCcEEEeeEEEEeecccccH-HHHh-hCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechh
Confidence 7888999999999999999996 4444 312 356777888777 344454 8999999998543 11
Q ss_pred CchHHHHHHHHHHhh
Q 016069 377 GAAADAQNIADHINS 391 (396)
Q Consensus 377 ~a~~~a~~~a~~i~~ 391 (396)
.+..+++.++.++..
T Consensus 295 ~a~~~~~i~~~~~~~ 309 (415)
T COG0446 295 IAVAAGRIAAENIAG 309 (415)
T ss_pred hHhhhhHHHHHHhcc
Confidence 666777777777764
No 84
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.79 E-value=8.1e-19 Score=164.87 Aligned_cols=295 Identities=19% Similarity=0.197 Sum_probs=180.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|.||||||+|+++|..|+++|+.|+++|+.+..||..... .+.|....++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence 4799999999999999999999999999999999998865532 2333344566777
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
..++.++.|+++ +.++.+- .. ++... -.-.+|.|++|+|. ..|+..+++|.+..
T Consensus 179 ~i~~l~~~Gv~~--~~~~~vG--------~~--it~~~---------L~~e~Dav~l~~G~-~~~~~l~i~g~d~~---- 232 (457)
T COG0493 179 RLELLERSGVEF--KLNVRVG--------RD--ITLEE---------LLKEYDAVFLATGA-GKPRPLDIPGEDAK---- 232 (457)
T ss_pred HHHHHHHcCeEE--EEcceEC--------Cc--CCHHH---------HHHhhCEEEEeccc-cCCCCCCCCCcCCC----
Confidence 777788888665 7777772 01 33322 22345999999997 47887788876531
Q ss_pred CCCcceeeccCC------------C--CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCce-eeehhhhHH
Q 016069 167 TGTGEVIHSTQY------------K--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVH-VLSREMVYL 230 (396)
Q Consensus 167 ~~~~~~~~~~~~------------~--~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~-~~p~~~~~~ 230 (396)
.+....++ . ......+++++|||+|.+++|++....+.|+ +|+.+.+.... -........
T Consensus 233 ----gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~ 308 (457)
T COG0493 233 ----GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWA 308 (457)
T ss_pred ----cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccc
Confidence 11111111 1 1122235999999999999999999999998 58777633311 000000000
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhh--cCCCeEEccC--ceeEE
Q 016069 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI--KSGQIQVLPG--IESIR 306 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~~~--v~~~~ 306 (396)
.....+... ..+. ...+.......+ ++++|.-... +..-.
T Consensus 309 ~~~~~~~a~--------------------eeg~----------------~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~ 352 (457)
T COG0493 309 AQLEVRSAG--------------------EEGV----------------ERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE 352 (457)
T ss_pred hhhhhhhhh--------------------hcCC----------------cccccCCceeEeecCCCcEeeeecccccccC
Confidence 000000000 0000 000000001111 1233322111 11111
Q ss_pred C-------CeEEec-CCcEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc---c
Q 016069 307 G-------NEVIFE-NGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---L 375 (396)
Q Consensus 307 ~-------~~v~~~-~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~ 375 (396)
. ..+... +...+++|.|+.|+|+.++...+.........+..|.+.++.....|+.|++||.||+.++ +
T Consensus 353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~v 432 (457)
T COG0493 353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALV 432 (457)
T ss_pred cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhh
Confidence 1 011111 2245689999999999998755432011345677888888755558999999999999875 6
Q ss_pred cCchHHHHHHHHHHhh
Q 016069 376 YGAAADAQNIADHINS 391 (396)
Q Consensus 376 ~~a~~~a~~~a~~i~~ 391 (396)
..|+.+++.+|+.|..
T Consensus 433 v~ai~eGr~aak~i~~ 448 (457)
T COG0493 433 VWAIAEGREAAKAIDK 448 (457)
T ss_pred hhHHhhchHHHHhhhH
Confidence 6999999999999984
No 85
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=9.1e-16 Score=140.72 Aligned_cols=360 Identities=18% Similarity=0.222 Sum_probs=195.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCc-ccccCCcCceeeccccccccCC--CCC------------
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQLP--HLP------------ 69 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g---~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~--~~~------------ 69 (396)
++|+|||+|++|+.+|.+|.+.- ..|.|+|+.+.+|. ......-+...++++..-+... ..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 69999999999999999999851 23999999988874 5554444444555544332221 101
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHhc----CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEe
Q 016069 70 -------FPSSYPMFVSRAQFIEYLDHYVSHF----NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (396)
Q Consensus 70 -------~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 138 (396)
...+-+.|+++.-+-+|+.+....+ ....-.+...+++++....+.+.|.+.+.++ ....+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceeee
Confidence 1123345777877777776654433 2111125667777777765446777777776 67899
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCcce-eeccCC----CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC--c
Q 016069 139 RFLVVASGETSNPFTPDIRGLSSFCSSATGTGEV-IHSTQY----KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA--K 211 (396)
Q Consensus 139 d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g~--~ 211 (396)
|.+|+|||+ +.|..+.. ...+ .+.. +....+ .+..+ ...+|+|+|+|.+-+|....+.++|. +
T Consensus 154 d~~Vlatgh-~~~~~~~~--~~~~------~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~ 223 (474)
T COG4529 154 DIIVLATGH-SAPPADPA--ARDL------KGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGP 223 (474)
T ss_pred eEEEEeccC-CCCCcchh--hhcc------CCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccc
Confidence 999999996 33332221 1111 1111 111111 11111 25679999999999999999999875 5
Q ss_pred eEEEEecCceeeehhhh----------HHHHHH---hhcCCh-------------hhHH----HHHHHHHHHHhcccccc
Q 016069 212 TSLVIRSPVHVLSREMV----------YLGLVL---LRYVPC-------------GGVD----TLMVMLSRLVYGDLSKY 261 (396)
Q Consensus 212 v~~~~r~~~~~~p~~~~----------~~~~~~---~~~~~~-------------~~~~----~~~~~~~~~~~~~~~~~ 261 (396)
||+++|+.....+..+. ...... .+.+.. ..++ .+.++++++......+|
T Consensus 224 It~iSRrGl~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf 303 (474)
T COG4529 224 ITAISRRGLVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRF 303 (474)
T ss_pred eEEEeccccccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHH
Confidence 99999998222221110 000000 000000 0111 11112221111111100
Q ss_pred CcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECC----eEEec----C-CcEEeCcEEEECCCCCC
Q 016069 262 GIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFE----N-GHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~----~v~~~----~-g~~~~~D~vi~atG~~~ 331 (396)
.....+++.--..-..|.+.....+.+.++.++++.+ +..++.. .+.+. + .+++++|.||.|+|..+
T Consensus 304 ---~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~ 380 (474)
T COG4529 304 ---ERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAH 380 (474)
T ss_pred ---HHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCc
Confidence 0111111111111235666666677788889999988 5555433 24443 1 25679999999999987
Q ss_pred Cccc----c----cccCCCCCCCC--CCCcCCCCCC-----CccCCCceEEEeccccccc-------CchHHHHHHHHHH
Q 016069 332 STNV----W----LKQGDDSMLND--DGIPKQSYPN-----HWKGKNGLYCVGLSRKGLY-------GAAADAQNIADHI 389 (396)
Q Consensus 332 ~~~~----~----~~~~~~~~~~~--~g~~~~~~~~-----~~~~~~~vya~Gd~~~~~~-------~a~~~a~~~a~~i 389 (396)
.... + .+ .+....+. .|. .++++. ..+..+++|++|..+.+.. ....++..+|..|
T Consensus 381 ~~~~~s~~~L~sl~~-~Gl~rpd~~~lGl-~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l 458 (474)
T COG4529 381 DNSLSSDPFLRSLGE-NGLARPDPPGLGL-DVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQL 458 (474)
T ss_pred CCCccchHHHHHHHh-CCccccCCCCCce-eeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHH
Confidence 6521 1 11 11111111 122 222221 2234689999999987732 4555666666666
Q ss_pred h
Q 016069 390 N 390 (396)
Q Consensus 390 ~ 390 (396)
.
T Consensus 459 ~ 459 (474)
T COG4529 459 A 459 (474)
T ss_pred h
Confidence 5
No 86
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.73 E-value=9.9e-16 Score=134.80 Aligned_cols=161 Identities=23% Similarity=0.226 Sum_probs=105.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
....|+|||+||||+.+|..|.++ +..|+++|+.+...|..+...- +..+.-..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA-----------------------PDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA-----------------------PDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-----------------------CCCcchhhH
Confidence 346999999999999999999984 5799999999977765543211 111222334
Q ss_pred HHHHHHHHHhcCCcceeeeceEE-EEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016069 84 IEYLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (396)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~ 162 (396)
...+...+++..... ..|.+| .+ +.+.. -+-.||.||+|.|+ ..++...+||.+..
T Consensus 76 intFt~~aE~~rfsf--~gNv~vG~d-----------vsl~e---------L~~~ydavvLaYGa-~~dR~L~IPGe~l~ 132 (468)
T KOG1800|consen 76 INTFTKTAEHERFSF--FGNVKVGRD-----------VSLKE---------LTDNYDAVVLAYGA-DGDRRLDIPGEELS 132 (468)
T ss_pred HHHHHHHhhccceEE--Eecceeccc-----------ccHHH---------HhhcccEEEEEecC-CCCcccCCCCcccc
Confidence 445555566544332 444444 11 22221 34578999999997 47888889987632
Q ss_pred ccCCCCCcceeeccCC----C-------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhc----------------------
Q 016069 163 CSSATGTGEVIHSTQY----K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHA---------------------- 209 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~----~-------~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g---------------------- 209 (396)
+ ++...++ . ...++...+++|||.|..++++|+.|...-
T Consensus 133 -------~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~V 204 (468)
T KOG1800|consen 133 -------G-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNV 204 (468)
T ss_pred -------c-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCc
Confidence 1 2221111 1 123455889999999999999999988531
Q ss_pred CceEEEEecCc
Q 016069 210 AKTSLVIRSPV 220 (396)
Q Consensus 210 ~~v~~~~r~~~ 220 (396)
.+|+++.|+..
T Consensus 205 kdV~lvgRRgp 215 (468)
T KOG1800|consen 205 KDVKLVGRRGP 215 (468)
T ss_pred ceEEEEeccCc
Confidence 25888888873
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.73 E-value=1.2e-15 Score=142.76 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCeEEEECCChHHHHHHHHHH-hcCCCeEEEecCCCCCcccccC
Q 016069 7 GVEVIIVGAGPSGLATAACLS-LQSIPYVILERENCYASIWKKY 49 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~-~~g~~v~lie~~~~~gg~~~~~ 49 (396)
.++|+||||||||+++|..|+ +.|++|+|+|+.+..||.++..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 578999999999999999875 5699999999999999987743
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.72 E-value=2.1e-16 Score=157.57 Aligned_cols=199 Identities=11% Similarity=0.073 Sum_probs=107.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc-------CCcCceee-ccccccccCCCCCCCCCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-------YSYDRLRL-HLAKQFCQLPHLPFPSSYPMF 77 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (396)
..++|+||||||||+++|+.|++.|++|+++|+....|+.... ..+..+.. ..+...-.+..+ ..+ +
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y----GIp-~ 456 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY----GIT-V 456 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc----Ccc-c
Confidence 4679999999999999999999999999999987654432110 00000000 000000000000 111 1
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016069 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~ 157 (396)
.-.....+.++... ..+..+.++.+..+ . .. ++..+- ....||.|++|||+ ..|+.+++|
T Consensus 457 R~~k~~l~~i~~il-~~g~~v~~~~gv~l---G-----~d--it~edl--------~~~gyDAV~IATGA-~kpr~L~IP 516 (1028)
T PRK06567 457 RWDKNNLDILRLIL-ERNNNFKYYDGVAL---D-----FN--ITKEQA--------FDLGFDHIAFCIGA-GQPKVLDIE 516 (1028)
T ss_pred cchHHHHHHHHHHH-hcCCceEEECCeEE---C-----cc--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCC
Confidence 11112222222222 22333422334442 1 11 222211 23568999999995 268888888
Q ss_pred CccccccCCCCCcceeeccCCCCC------------C-CCCCCeEEEEcCCCCHHHHHHHHHhh---cCceEEEEecCce
Q 016069 158 GLSSFCSSATGTGEVIHSTQYKNG------------K-PYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVIRSPVH 221 (396)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~i~VvG~G~~g~e~a~~l~~~---g~~v~~~~r~~~~ 221 (396)
|.+.. .++...++... . ...+++++|||||.+|+|+|...... +.++++....+ .
T Consensus 517 Geda~--------GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~ 587 (1028)
T PRK06567 517 NFEAK--------GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-K 587 (1028)
T ss_pred CccCC--------CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-h
Confidence 87642 22222221110 1 11267899999999999999977653 44555555444 5
Q ss_pred eeehhhhHHHHHHhhcC
Q 016069 222 VLSREMVYLGLVLLRYV 238 (396)
Q Consensus 222 ~~p~~~~~~~~~~~~~~ 238 (396)
.+|.++.+++..+.+.+
T Consensus 588 ~~~~~d~eia~~f~~h~ 604 (1028)
T PRK06567 588 DLTEEDKEIAEEFIAHA 604 (1028)
T ss_pred hcccccHHHHHHHHHHH
Confidence 56777777776554443
No 89
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.71 E-value=6.6e-17 Score=143.49 Aligned_cols=301 Identities=14% Similarity=0.172 Sum_probs=175.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC--------cccccCCcCceeeccccccccCCCCCCCC----
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHLPFPS---- 72 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (396)
+...+|||+|.+..+++...... +.++.+|...+... ..|...... +..-+.|..+.-..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn------~~k~lrfkqwsGkeRsif 251 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPN------SAKKLRFKQWSGKERSIF 251 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCC------hhhheeecccCCccceeE
Confidence 56799999999998887776654 56888887665432 133321100 00000110000000
Q ss_pred --CCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 73 --SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 73 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
-...|++.+++-. +..-|+.+ ..+.+|+.++..+ .. |.+.+| .+|.||.++|||| -+
T Consensus 252 fepd~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d--~~--V~LnDG--------~~I~YdkcLIATG--~~ 310 (659)
T KOG1346|consen 252 FEPDGFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED--KK--VILNDG--------TTIGYDKCLIATG--VR 310 (659)
T ss_pred ecCCcceeChhHCcc-----cccCceEE--EeccceEEeeccc--Ce--EEecCC--------cEeehhheeeecC--cC
Confidence 0012333333322 22235554 8888999998765 44 788887 7899999999999 56
Q ss_pred CCCCC-CCCccccccCCCCCcceeecc-CCCCCCC--CCCCeEEEEcCCCCHHHHHHHHHhh----cCceEEEEecCcee
Q 016069 151 PFTPD-IRGLSSFCSSATGTGEVIHST-QYKNGKP--YGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVIRSPVHV 222 (396)
Q Consensus 151 p~~~~-~~g~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~VvG~G~~g~e~a~~l~~~----g~~v~~~~r~~~~~ 222 (396)
|+-.+ +.....- ....-..+++. +|...+. ...++|.|||+|..|-|++..|.+. |.+|+-+.... .
T Consensus 311 Pk~l~~~~~A~~e---vk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek-~- 385 (659)
T KOG1346|consen 311 PKKLQVFEEASEE---VKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK-Y- 385 (659)
T ss_pred cccchhhhhcCHH---hhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc-C-
Confidence 65443 2111100 00011122221 2211111 1358899999999999999999975 45666554333 1
Q ss_pred eehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-
Q 016069 223 LSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG- 301 (396)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~- 301 (396)
++... +|.. ++....+.+++++|.++++
T Consensus 386 ------nm~ki----LPey-----------------------------------------ls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 386 ------NMEKI----LPEY-----------------------------------------LSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred ------Chhhh----hHHH-----------------------------------------HHHHHHHHHHhcCceeccch
Confidence 11111 1111 1111247789999999998
Q ss_pred -ceeEECC----eEEecCCcEEeCcEEEECCCCCCCcccccccCCCCCCCC-CCCcCCCCCCCccCCCceEEEeccccc-
Q 016069 302 -IESIRGN----EVIFENGHSHHFDSIVFCTGFKRSTNVWLKQGDDSMLND-DGIPKQSYPNHWKGKNGLYCVGLSRKG- 374 (396)
Q Consensus 302 -v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~vya~Gd~~~~- 374 (396)
|.++... -+.++||.++..|+|++|+|-.||+ .+.+.+ +..+|+ -|-.++|..+.. ..|||++||++..
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~s-gLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~ 490 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEAS-GLEIDEKLGGFRVNAELKA--RENVWVAGDAACFE 490 (659)
T ss_pred hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccc-cceeecccCcEEeeheeec--ccceeeecchhhhh
Confidence 5555332 2677899999999999999999999 454413 444443 466677744433 5799999998643
Q ss_pred -----------ccCchHHHHHHHHHHhhhcC
Q 016069 375 -----------LYGAAADAQNIADHINSILS 394 (396)
Q Consensus 375 -----------~~~a~~~a~~~a~~i~~~l~ 394 (396)
-..|.-.+|.+..|+...-+
T Consensus 491 D~~LGrRRVehhdhavvSGRLAGENMtgAak 521 (659)
T KOG1346|consen 491 DGVLGRRRVEHHDHAVVSGRLAGENMTGAAK 521 (659)
T ss_pred cccccceeccccccceeeceecccccccccC
Confidence 11566677777777665443
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.71 E-value=1.7e-15 Score=145.70 Aligned_cols=192 Identities=16% Similarity=0.159 Sum_probs=115.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCC-c-ccccCC-cCceeeccc--------cccccCCCCC-----
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYA-S-IWKKYS-YDRLRLHLA--------KQFCQLPHLP----- 69 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~g-g-~~~~~~-~~~~~~~~~--------~~~~~~~~~~----- 69 (396)
++|+|||||++|+++|.+|.+.+ ++|+|||+...+| | .|+... ...+.++.. ..+..+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 48999999999999999998764 5899999988777 4 344311 111111110 1111110000
Q ss_pred ------C-CCCCCCCCCHHHHHHHHHHHHH-------hcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 70 ------F-PSSYPMFVSRAQFIEYLDHYVS-------HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 70 ------~-~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
. ......|+++..+-+|+++... ..+..+.++.+++|++++..+ +.|.|++.++ . ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~g----g---~~ 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQD----L---PS 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCC----C---eE
Confidence 0 0011246666655555544332 223334457788999998865 6688877543 1 57
Q ss_pred EEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhc------
Q 016069 136 YSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA------ 209 (396)
Q Consensus 136 ~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g------ 209 (396)
+.+|.||+|+|+. .|..+ .+...| +-............+.+|+|+|.|.+++|++..|+..|
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y---------i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~ 220 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY---------FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIED 220 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc---------cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceecc
Confidence 8999999999962 33222 111112 00011111112223689999999999999999998652
Q ss_pred ---------------CceEEEEecCc
Q 016069 210 ---------------AKTSLVIRSPV 220 (396)
Q Consensus 210 ---------------~~v~~~~r~~~ 220 (396)
.++++++|+..
T Consensus 221 ~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 221 DKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred CCCcceeeecCCCCCceEEEEeCCCC
Confidence 36899999884
No 91
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.62 E-value=7.4e-15 Score=122.98 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=147.7
Q ss_pred eEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 9 EVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
+.+|||||+||.+||..|+.+. .+|.|+-.++.+-. ......+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHH
Confidence 3689999999999999999864 47888887652211 0112233333
Q ss_pred HHHH------HHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcc
Q 016069 87 LDHY------VSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLS 160 (396)
Q Consensus 87 l~~~------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~ 160 (396)
++++ +.+++-+..-+.+. |..++. ....+++.++ ..+.|++|++|+| .+|.+-.- +.+
T Consensus 49 lekfdv~eq~~~elg~~f~~~~~~-v~~~~s----~ehci~t~~g--------~~~ky~kKOG~tg--~kPklq~E-~~n 112 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFRRFLND-VVTWDS----SEHCIHTQNG--------EKLKYFKLCLCTG--YKPKLQVE-GIN 112 (334)
T ss_pred HHhcCccccchhhhcccHHHHHHh-hhhhcc----ccceEEecCC--------ceeeEEEEEEecC--CCcceeec-CCC
Confidence 3322 11112111101111 333332 3345888887 6799999999999 67765432 222
Q ss_pred ccccCCCCCcceeeccCCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh-hhHHHHHH
Q 016069 161 SFCSSATGTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVL 234 (396)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~ 234 (396)
. .++...+....+. ...|.|+|+|.|-+++|++.++... +|+|....+. ....+ +......+
T Consensus 113 ~---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~~-IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 113 P---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDEG-ISATFFDPGAAEFY 180 (334)
T ss_pred c---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecchh-hhhcccCccHHHHh
Confidence 2 2333333322222 2478999999999999999988654 7899988773 22222 22111111
Q ss_pred hhcC--Chh----hHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeE-E
Q 016069 235 LRYV--PCG----GVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESI-R 306 (396)
Q Consensus 235 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~-~ 306 (396)
..-+ ..+ ...++.-. ..+ .-.+-...-+..++.|.....-+. ..+ -++..+....+ +..+ .
T Consensus 181 ~i~l~a~~s~~~iaiKh~q~i--ea~--pk~~~n~vg~algpDw~s~~dl~g------~~e-seer~l~~l~~~~~~~~d 249 (334)
T KOG2755|consen 181 DINLRADRSTRIIAIKHFQYI--EAF--PKCEENNVGPALGPDWHSQIDLQG------ISE-SENRSLTYLRNCVITSTD 249 (334)
T ss_pred Hhhhhcccccchhhhhhhhhh--hhc--CcccccCcccccCcchhhhccccc------chh-hhhhhhHHhhhheeeecc
Confidence 1111 000 00000000 000 000001111223333222111000 000 00111111111 1111 1
Q ss_pred CC---eEEecC---C--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCCCCccCCCceEEEeccccc
Q 016069 307 GN---EVIFEN---G--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 374 (396)
Q Consensus 307 ~~---~v~~~~---g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 374 (396)
++ ++...+ + ..+.+|.+++|||..||...+.. . .....++|-+.++ +.+.|+.|++||+||.+..
T Consensus 250 ~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~-~-~lq~~edggikvd-d~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 250 TSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMN-K-MLQITEDGGIKVD-DAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred chhhcccccccccccccceeeeeEEEeccccCcCceEEec-C-hhhhccccCeeeh-hhccccccceeeecceecc
Confidence 11 122211 1 35679999999999999973333 2 3445667777666 4677889999999998653
No 92
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=1.3e-15 Score=130.47 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=72.6
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH---
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (396)
||+|||||+||+++|..|++.+.+++++|+.+..... .... +... ..........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~~~-------~~~~----------~~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SGCI-------PSPL----------LVEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HSHH-------HHHH----------HHHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--cccc-------cccc----------cccccccccccccccc
Confidence 7999999999999999999999999999887632210 0000 0000 0000000001110
Q ss_pred -HHHHHHHhcCCcceeeeceEEEEEEEcCCCCc-----eEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc
Q 016069 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEATNM-----WNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL 159 (396)
Q Consensus 86 -~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~ 159 (396)
.+.+.+...+++. ++++++.+++... .. +.+..... ++. .++.||+||+||| +.|+.|.++|.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~~~---~~~--~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPES--KRVVCPAVTIQVVET---GDG--REIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEEST--TEEEETCEEEEEEET---TTE--EEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEE--eeccccccccccc--cccccCcccceeecc---CCc--eEecCCeeeecCc--cccceeecCCC
Confidence 1222223445554 7889999998865 32 22322111 111 7899999999999 77888888876
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.45 E-value=4.2e-13 Score=120.38 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=95.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc---------CC--cCceeeccc---c----ccccCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---------YS--YDRLRLHLA---K----QFCQLPHL 68 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~---------~~--~~~~~~~~~---~----~~~~~~~~ 68 (396)
.+||+|||||+|||.||..+++.|.+|+|+|+.+.+|....- +. +..+..+.| + .+..|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 589999999999999999999999999999999877743221 10 111111111 0 01111100
Q ss_pred -----------CCCCC--CCCCC---CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 69 -----------PFPSS--YPMFV---SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 69 -----------~~~~~--~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
.+... -..|+ ....+.+.+...+++.++.+ +.+++|.+++.++ ..|.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 00000 01233 45688888888889888887 9999999999876 7899999886
Q ss_pred eEEEEeCEEEEeecCCCCCCCC
Q 016069 133 EEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s~p~~~ 154 (396)
.++++|.+|+|||..|.|.+-
T Consensus 152 -~~i~~d~lilAtGG~S~P~lG 172 (408)
T COG2081 152 -ETVKCDSLILATGGKSWPKLG 172 (408)
T ss_pred -CEEEccEEEEecCCcCCCCCC
Confidence 579999999999988888654
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.43 E-value=1.4e-11 Score=106.40 Aligned_cols=289 Identities=16% Similarity=0.209 Sum_probs=156.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHH
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQ-SI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~-g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
+.+++|+|||||.+|+++|.++.++ +. +|.++|+....- -.|++.+ +...+..+...... .....+...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~Hy------YQPgfTL-vGgGl~~l~~srr~-~a~liP~~a- 107 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHY------YQPGFTL-VGGGLKSLDSSRRK-QASLIPKGA- 107 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcc------cCcceEE-eccchhhhhhccCc-ccccccCCc-
Confidence 3579999999999999999999875 43 899999865211 0112211 11111111110000 001111111
Q ss_pred HHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016069 83 FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (396)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~ 162 (396)
.++.+.+.+ ++++. +. |.+.++ ++|+||++|||.| -.-+.-.|+|+.+-
T Consensus 108 --~wi~ekv~~---------------f~P~~--N~--v~t~gg--------~eIsYdylviA~G--iql~y~~IkGl~Ea 156 (446)
T KOG3851|consen 108 --TWIKEKVKE---------------FNPDK--NT--VVTRGG--------EEISYDYLVIAMG--IQLDYGKIKGLVEA 156 (446)
T ss_pred --HHHHHHHHh---------------cCCCc--Ce--EEccCC--------cEEeeeeEeeeee--ceeccchhcChHhh
Confidence 223333333 33333 33 777776 7899999999999 45555556665432
Q ss_pred ccCCCCCcceee-cc-----------CCCCCC---CCCCCeEEEEcCCCCHHHHHHHHHhh-cC--ceEEEEecCceeee
Q 016069 163 CSSATGTGEVIH-ST-----------QYKNGK---PYGGKNVLVVGSGNSGMEIALDLANH-AA--KTSLVIRSPVHVLS 224 (396)
Q Consensus 163 ~~~~~~~~~~~~-~~-----------~~~~~~---~~~~~~i~VvG~G~~g~e~a~~l~~~-g~--~v~~~~r~~~~~~p 224 (396)
+..++.+.. +. .+.... .+.+..|-..|+-.-.+-++....+. |. +++++.......+
T Consensus 157 ---l~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~i- 232 (446)
T KOG3851|consen 157 ---LDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTI- 232 (446)
T ss_pred ---ccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccce-
Confidence 000111100 00 011111 12244555666666667777666654 32 3555544431110
Q ss_pred hhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--c
Q 016069 225 REMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--I 302 (396)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v 302 (396)
+ . ...+.+.+.+.+++.+|++... +
T Consensus 233 -------------F---g-------------------------------------Vk~Y~~AL~k~~~~rni~vn~krnL 259 (446)
T KOG3851|consen 233 -------------F---G-------------------------------------VKHYADALEKVIQERNITVNYKRNL 259 (446)
T ss_pred -------------e---c-------------------------------------HHHHHHHHHHHHHhcceEeeeccce
Confidence 0 0 0112222345566677766544 5
Q ss_pred eeEECCe--EEec---C-C--cEEeCcEEEECCCCCCCcccccccCCCCCCCCCCCcCCCCC-CCccCCCceEEEecccc
Q 016069 303 ESIRGNE--VIFE---N-G--HSHHFDSIVFCTGFKRSTNVWLKQGDDSMLNDDGIPKQSYP-NHWKGKNGLYCVGLSRK 373 (396)
Q Consensus 303 ~~~~~~~--v~~~---~-g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~vya~Gd~~~ 373 (396)
.++..+. .+++ + | ++++++.+-.....++.. .+. . ..+.|..|++-+|.. ++.+..||||++|||.+
T Consensus 260 iEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe--~l~-~-s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n 335 (446)
T KOG3851|consen 260 IEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPE--VLA-N-SDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMN 335 (446)
T ss_pred EEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChh--hhh-c-CcccCcccceecChhhhccccCCCceeeccccC
Confidence 5554431 2222 1 4 467899998888887643 444 3 447889999988865 44567899999999988
Q ss_pred ccc-----CchHHHHHHHHHHhhhcC
Q 016069 374 GLY-----GAAADAQNIADHINSILS 394 (396)
Q Consensus 374 ~~~-----~a~~~a~~~a~~i~~~l~ 394 (396)
.+. .+..|+..+-+|+...++
T Consensus 336 ~PnsKTaAAvaaq~~vv~~nl~~~m~ 361 (446)
T KOG3851|consen 336 LPNSKTAAAVAAQSPVVDKNLTQVMQ 361 (446)
T ss_pred CCchhhHHHHHhcCchhhhhHHHHhc
Confidence 855 344566666667665443
No 95
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.39 E-value=8.6e-11 Score=107.20 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=36.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
..+++|||||++|+++|..|++.|+++.|+|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 368999999999999999999999999999999999985
No 96
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.35 E-value=1.6e-11 Score=100.07 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=91.1
Q ss_pred EEECCChHHHHHHHHHHhc-----CCCeEEEecCCCC-CcccccCCcCceeeccccccccCCCC-C-----------C--
Q 016069 11 IIVGAGPSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQLPHL-P-----------F-- 70 (396)
Q Consensus 11 vIIG~G~aGl~~A~~L~~~-----g~~v~lie~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~-- 70 (396)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.....+...++++...+..... + .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 4589999997664 45787765666667766554443221 1 0
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHhc------CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEE
Q 016069 71 ---PSSYPMFVSRAQFIEYLDHYVSHF------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (396)
Q Consensus 71 ---~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~v 141 (396)
......|+++..+-+|+.+..+.. ++.+. +...+|++++..+ +.|.|.+.++ ..+.+|.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g--------~~~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG--------QSIRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC--------CEEEeCEE
Confidence 112245889999999988766553 22221 3467899999876 6688888876 67899999
Q ss_pred EEeecC
Q 016069 142 VVASGE 147 (396)
Q Consensus 142 viAtG~ 147 (396)
|+|+|+
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.34 E-value=5.8e-12 Score=117.85 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=75.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc---------C---CcCceeec---cccc----cccCC--
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---------Y---SYDRLRLH---LAKQ----FCQLP-- 66 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~---------~---~~~~~~~~---~~~~----~~~~~-- 66 (396)
|||+|||||+|||.||..|++.|.+|+|+|+.+.+|..... + ........ .+.. +..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999987742211 0 00001000 0000 00000
Q ss_pred ---------CCCCC--CC---CCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 67 ---------HLPFP--SS---YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 67 ---------~~~~~--~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
..+.. .+ ++.--....+.+.|...+++.++++ +++++|.++..++ ++.|.|.+.+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 00000 00 0111245688888888888888887 9999999998875 34588998433
Q ss_pred eEEEEeCEEEEeecCCCCCCC
Q 016069 133 EEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s~p~~ 153 (396)
..+.+|.||+|||..+.|..
T Consensus 151 -~~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 151 -GEYEADAVILATGGKSYPKT 170 (409)
T ss_dssp -EEEEESEEEE----SSSGGG
T ss_pred -ccccCCEEEEecCCCCcccc
Confidence 78999999999998766654
No 98
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.27 E-value=3.4e-10 Score=106.43 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
++||+|||+|.+|+++|..|+++|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999864
No 99
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.26 E-value=1.2e-10 Score=111.03 Aligned_cols=135 Identities=19% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc------ccccC----CcCce---------ee-----
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKKY----SYDRL---------RL----- 56 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~~~~----~~~~~---------~~----- 56 (396)
|++. .+||+||||||+|+++|..|+++|++|+|+|+....|. ..... ..+.+ ..
T Consensus 1 m~~~--~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 1 MSED--IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLA 78 (428)
T ss_pred CCcc--cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEE
Confidence 5543 59999999999999999999999999999998765432 11100 01100 00
Q ss_pred -ccccccccCCCC--C--CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCce
Q 016069 57 -HLAKQFCQLPHL--P--FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (396)
Q Consensus 57 -~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~ 131 (396)
........+... . .+......+.+.++.+++.+.+++.|+.+ +.+++|+++..++ +.+.....++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g------ 148 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG------ 148 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC------
Confidence 000000000000 0 00011122467888899988888888776 8999999987654 4443333333
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016069 132 IEEYYSGRFLVVASGETS 149 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s 149 (396)
.++++|.||+|+|..+
T Consensus 149 --~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 149 --DVIEAKTVILADGVNS 164 (428)
T ss_pred --cEEECCEEEEEeCCCH
Confidence 5789999999999643
No 100
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.26 E-value=1.1e-10 Score=110.28 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=84.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecC-C----CCCcccc-------------cCCcCceeeccccccccCCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERE-N----CYASIWK-------------KYSYDRLRLHLAKQFCQLPHLP 69 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~-~----~~gg~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 69 (396)
|||+||||||+|+++|+.|++.|++|+|+|+. + +.++... .+.+.+..+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 2 2222100 0112222222222100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecC--CCCceeeEEEEeCEEEEeecC
Q 016069 70 FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL--SPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~--~~g~~~~~~~~~d~vviAtG~ 147 (396)
....+.....+..+.++|.+.+.+.|+++ +. +.|+++..++ +.+.++..++. ..++. .++++|+||.|+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~--~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGGEK--GSVEADVVIGADGA 153 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCCcc--eEEEeCEEEECCCC
Confidence 11111113688899999998888888775 44 4688887665 56777765420 00121 57999999999997
Q ss_pred CC
Q 016069 148 TS 149 (396)
Q Consensus 148 ~s 149 (396)
.|
T Consensus 154 ~S 155 (388)
T TIGR02023 154 NS 155 (388)
T ss_pred Cc
Confidence 55
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.26 E-value=5.7e-11 Score=107.89 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=84.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCC----------cCcee-e-ccc-cccccCC----CCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYS----------YDRLR-L-HLA-KQFCQLP----HLPF 70 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~----------~~~~~-~-~~~-~~~~~~~----~~~~ 70 (396)
+||+|||||++|+++|..|++.|++|+|+|+....+..+.... ..... . ... ..++... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999875543222110 00000 0 000 0000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 71 PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
+.......++..+.+.+.+.+.+.+++. +++++|+++..++ +.+.+....+ + .++++|+||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~-~------~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG-E------GTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc-c------EEEEeCEEEECCCcch
Confidence 1111123577888899988888887766 8999999998765 4444554332 1 6799999999999754
No 102
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=2.3e-10 Score=100.95 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=85.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccC-CcCceeeccc-cccccCCCCCCCCCC--CCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQFCQLPHLPFPSSY--PMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 81 (396)
.+||+|||||++|+++|..|++.|++|+|+|+....|| .|... .++...+..+ ..+..-...++.... ....++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 58999999999999999999999999999999887765 44322 1222111110 000000111111100 1124667
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEee------cCCCCceeeEEEEeCEEEEeecCCC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN------LLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~------~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
++...+...+.+.++.+ +.++.|+++..++++..+-+.... +.. .+. .+++++.||+|||+.+
T Consensus 105 ~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~-~~~--~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLH-VDP--LTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCC-CCc--EEEEcCEEEEEeCCCc
Confidence 88888888888888776 899999998765421222222211 100 111 6799999999999644
No 103
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=2.9e-10 Score=99.93 Aligned_cols=136 Identities=23% Similarity=0.256 Sum_probs=85.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-cccccCC-cCceeeccc-cccccCCCCCCCCCCC--CCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g-g~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 81 (396)
.+||+|||||++|+++|+.|+++|.+|+|+|+...+| +.|.... ++.+.+..+ ..+......++..... ...++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5899999999999999999999999999999998775 4664321 222111111 0111111112111111 123567
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCC-CceEEEEee------cCCCCceeeEEEEeCEEEEeecC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKASN------LLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~~------~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
++...+...+.+.++++ ++++.|+++..+++. ...-|.+.. +.. .+. ..++++.||.|||+
T Consensus 101 el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~-~d~--~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 101 EFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLH-VDP--LTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCC-CCC--EEEEcCEEEEeecC
Confidence 88888888888888766 899999998876521 111233321 100 011 68999999999995
No 104
>PRK06847 hypothetical protein; Provisional
Probab=99.19 E-value=5.6e-10 Score=105.14 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=86.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc----cc-cc-------------------CCcCceeeccc--c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS----IW-KK-------------------YSYDRLRLHLA--K 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg----~~-~~-------------------~~~~~~~~~~~--~ 60 (396)
..||+|||||++|+++|..|++.|++|+|+|+.+.... .. .. .......+... .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57999999999999999999999999999998764221 00 00 00111111111 0
Q ss_pred ccccCCCCCC-CCC--CCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEE
Q 016069 61 QFCQLPHLPF-PSS--YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (396)
Q Consensus 61 ~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 137 (396)
.+..+..... ... ......+.++.+++.+.+.+.++++ +++++|++++.++ +.+.+.+.++ .++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG--------TTGR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC--------CEEE
Confidence 0111110000 000 0123567888899988888777666 9999999998765 5677877665 5789
Q ss_pred eCEEEEeecCCCCC
Q 016069 138 GRFLVVASGETSNP 151 (396)
Q Consensus 138 ~d~vviAtG~~s~p 151 (396)
+|.||+|+|.+|..
T Consensus 152 ad~vI~AdG~~s~~ 165 (375)
T PRK06847 152 YDLVVGADGLYSKV 165 (375)
T ss_pred cCEEEECcCCCcch
Confidence 99999999976644
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.19 E-value=3.3e-10 Score=109.64 Aligned_cols=131 Identities=21% Similarity=0.304 Sum_probs=84.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---C----ccccc--------CCcCcee-----eccc-ccc--c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---A----SIWKK--------YSYDRLR-----LHLA-KQF--C 63 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~---g----g~~~~--------~~~~~~~-----~~~~-~~~--~ 63 (396)
.+||+||||||+|+++|..|+++|++|+|+|+.+.. + +.+.. ..++.+. .... ... .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 589999999999999999999999999999987532 1 11100 0000000 0000 000 0
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEE
Q 016069 64 QLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
.+...+..........+..+.+.+.+.+++.++.+ +++++|++++.++ +.+.+++.++ .++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g--------~~i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG--------RTLRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC--------CEEEeCEEEE
Confidence 01111111111223456677788888888777665 9999999998865 5666776543 5799999999
Q ss_pred eecCCC
Q 016069 144 ASGETS 149 (396)
Q Consensus 144 AtG~~s 149 (396)
|+|.+|
T Consensus 151 ADG~~S 156 (488)
T PRK06834 151 CDGGRS 156 (488)
T ss_pred ecCCCC
Confidence 999766
No 106
>PLN02463 lycopene beta cyclase
Probab=99.18 E-value=2.9e-10 Score=108.09 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----Cccccc------------CCcCceeeccccccccCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASIWKK------------YSYDRLRLHLAKQFCQLPHLP 69 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~-----gg~~~~------------~~~~~~~~~~~~~~~~~~~~~ 69 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. .+.|.. ..++......... ...
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~-----~~~ 102 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDG-----KKK 102 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCC-----CCc
Confidence 589999999999999999999999999999986532 123321 0111111110000 000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 70 FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.....-..+.+..+.+.+.+.+.+.++.. ..++|++++..+ +.+.|++.++ .++++|+||+|+|..+
T Consensus 103 ~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG--------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 103 DLDRPYGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG--------VKIQASLVLDATGFSR 169 (447)
T ss_pred cccCcceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence 00000113578888888888887777663 467899998765 5677888765 6799999999999643
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.3e-10 Score=94.17 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=86.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC-cccccCC-cCceeecccccc-ccCCCCCCCCCCCC--CCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLAKQF-CQLPHLPFPSSYPM--FVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g-g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~ 81 (396)
..||+|+||||+||+||+.|++.|.+|+++|++..+| |.|...+ ++.+.+..+... ..-...++...-.. ..+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 3699999999999999999999999999999988775 4887653 555555544322 11112222222121 12445
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCC------ceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATN------MWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~------~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
++..-+...+-+.+..+ +....|+++-..++.+ .|+.....+-..+. -.+++++||.|||+
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDP---l~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDP---LTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhcccccCc---ceeeEEEEEeCCCC
Confidence 55555655556667655 8888888887765321 23322222111011 68999999999996
No 108
>PRK08244 hypothetical protein; Provisional
Probab=99.18 E-value=5.2e-10 Score=109.08 Aligned_cols=134 Identities=21% Similarity=0.250 Sum_probs=84.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-------------------cccc-----CCcCceeecccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQF 62 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-------------------~~~~-----~~~~~~~~~~~~~~ 62 (396)
.+||+||||||+|+++|..|+++|++|+|+|+.+.... .|.. ...+..........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 37999999999999999999999999999998763211 0000 00111111100000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEE
Q 016069 63 CQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (396)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vv 142 (396)
..+.............++..+.+.+.+.+++.++++ +++++++++..++ +.+.++..+.. |. .++++|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~--g~---~~i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPD--GL---RTLTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCC--cc---EEEEeCEEE
Confidence 011100101111123466788888888888777766 9999999998765 55556654321 11 579999999
Q ss_pred EeecCCC
Q 016069 143 VASGETS 149 (396)
Q Consensus 143 iAtG~~s 149 (396)
.|+|..|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999766
No 109
>PRK08013 oxidoreductase; Provisional
Probab=99.17 E-value=3.3e-10 Score=107.47 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=84.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---c----------------------cccc------CCcCcee
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKK------YSYDRLR 55 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g---g----------------------~~~~------~~~~~~~ 55 (396)
++||+||||||+|+++|..|+++|++|+|+|+.+... | .|.. ..+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4899999999999999999999999999999876421 1 1110 0111111
Q ss_pred ecccccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCce
Q 016069 56 LHLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (396)
Q Consensus 56 ~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~ 131 (396)
+..+... ..+....... .......+..+.+.|.+.+.+. ++++ +++++|++++.++ +.+.++..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 1111100 0010000000 0012356778888887777664 5555 9999999998765 5566777664
Q ss_pred eeEEEEeCEEEEeecCCCC
Q 016069 132 IEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s~ 150 (396)
.++++|+||.|+|.+|.
T Consensus 153 --~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 --SMLTARLVVGADGANSW 169 (400)
T ss_pred --CEEEeeEEEEeCCCCcH
Confidence 67999999999997663
No 110
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.17 E-value=2e-10 Score=107.15 Aligned_cols=134 Identities=23% Similarity=0.253 Sum_probs=82.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-------------------ccc---CC--cC--ceeeccc--
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-------------------WKK---YS--YD--RLRLHLA-- 59 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-------------------~~~---~~--~~--~~~~~~~-- 59 (396)
+||+|||||++|+++|..|+++|++|+|+|+.+..... |.. .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999997643210 000 00 00 0011111
Q ss_pred ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCc
Q 016069 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (396)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~ 130 (396)
.....+. ............+..+.+.|.+.+++.++.+ +++++++++..+. +.+.+...+... |+
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~-g~ 155 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGED-GE 155 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCT-CE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccC-Cc
Confidence 0000000 0000011123567889999999888888555 9999999998876 455555555432 33
Q ss_pred eeeEEEEeCEEEEeecCCC
Q 016069 131 VIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 131 ~~~~~~~~d~vviAtG~~s 149 (396)
. .++++|.||.|+|..|
T Consensus 156 ~--~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 156 E--ETIEADLVVGADGAHS 172 (356)
T ss_dssp E--EEEEESEEEE-SGTT-
T ss_pred e--eEEEEeeeecccCccc
Confidence 2 5899999999999766
No 111
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.17 E-value=3.1e-10 Score=107.34 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=86.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc------CCc----Cce----eeccccccccCCCC----
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK------YSY----DRL----RLHLAKQFCQLPHL---- 68 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~------~~~----~~~----~~~~~~~~~~~~~~---- 68 (396)
.|||+||||||||++||+.|++.|++|+|+|++...|..-.. ... +.. ...+......+...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999998866641111 000 000 01111111111100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016069 69 PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~ 148 (396)
..+........+..+.++|...+++.|.++ +.++.+..+..++ +...+....+. .++++++||.|+|..
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~-------~e~~a~~vI~AdG~~ 151 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD-------DEVRAKVVIDADGVN 151 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC-------EEEEcCEEEECCCcc
Confidence 000011223568899999999999999888 9999999998876 44444444321 589999999999953
No 112
>PRK06184 hypothetical protein; Provisional
Probab=99.17 E-value=7e-10 Score=108.38 Aligned_cols=134 Identities=21% Similarity=0.290 Sum_probs=83.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc------cc-------------c-----cCCcCceeeccc-cc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IW-------------K-----KYSYDRLRLHLA-KQ 61 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg------~~-------------~-----~~~~~~~~~~~~-~~ 61 (396)
.+||+||||||+|+++|..|+++|++|+|+|+.+.... .+ . ...++....... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 58999999999999999999999999999998764321 11 0 001111111110 00
Q ss_pred cccCCCC---C----CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeE
Q 016069 62 FCQLPHL---P----FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (396)
Q Consensus 62 ~~~~~~~---~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~ 134 (396)
+...... . .+.......++..+.+.+.+.+.+.++++ +++++|++++.++ +.+.++..+.. +. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~--~~---~ 153 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPA--GE---E 153 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCC--Ce---E
Confidence 0000000 0 00001112456677778887777777665 9999999998765 45666653221 11 6
Q ss_pred EEEeCEEEEeecCCC
Q 016069 135 YYSGRFLVVASGETS 149 (396)
Q Consensus 135 ~~~~d~vviAtG~~s 149 (396)
++++|+||.|+|.+|
T Consensus 154 ~i~a~~vVgADG~~S 168 (502)
T PRK06184 154 TVRARYLVGADGGRS 168 (502)
T ss_pred EEEeCEEEECCCCch
Confidence 799999999999876
No 113
>PRK07190 hypothetical protein; Provisional
Probab=99.17 E-value=6.1e-10 Score=107.67 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=85.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc--------------CCc----------Cceee
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSY----------DRLRL 56 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~----------~~~~~ 56 (396)
|+.. .+||+||||||+|+++|..|+++|++|+|+|+.+.....-+. ..+ .....
T Consensus 1 m~~~--~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 1 MSTQ--VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCCc--cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 5543 589999999999999999999999999999988643211000 000 00000
Q ss_pred ccccccccCC--CCC-CC---CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCc
Q 016069 57 HLAKQFCQLP--HLP-FP---SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (396)
Q Consensus 57 ~~~~~~~~~~--~~~-~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~ 130 (396)
.....+.... .+. .. ........+..+.+.+.+.+.+.++++ +++++|+++..++ +.+.+.+.++
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g----- 149 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG----- 149 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence 0000110000 000 00 000112355667777877778788776 9999999998875 4555666543
Q ss_pred eeeEEEEeCEEEEeecCCC
Q 016069 131 VIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 131 ~~~~~~~~d~vviAtG~~s 149 (396)
.++++++||.|+|..|
T Consensus 150 ---~~v~a~~vVgADG~~S 165 (487)
T PRK07190 150 ---ERIQSRYVIGADGSRS 165 (487)
T ss_pred ---cEEEeCEEEECCCCCH
Confidence 5799999999999766
No 114
>PRK10015 oxidoreductase; Provisional
Probab=99.16 E-value=7.6e-10 Score=105.51 Aligned_cols=135 Identities=15% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC------cccccC----CcCceee------cccc----
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA------SIWKKY----SYDRLRL------HLAK---- 60 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g------g~~~~~----~~~~~~~------~~~~---- 60 (396)
|++. ++||+||||||+|+++|+.|+++|++|+|+|+.+..| |..... ..+.+.. ....
T Consensus 1 m~~~--~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 78 (429)
T PRK10015 1 MSDD--KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKIS 78 (429)
T ss_pred CCcc--ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEE
Confidence 5532 5899999999999999999999999999999876443 211111 0111100 0000
Q ss_pred -----ccccCC--CCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCce
Q 016069 61 -----QFCQLP--HLP--FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (396)
Q Consensus 61 -----~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~ 131 (396)
....+. ... .+........+..+.++|.+.+++.++.+ +.+++|+++..++ +.+.....++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~------ 148 (429)
T PRK10015 79 FLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD------ 148 (429)
T ss_pred EEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC------
Confidence 000000 000 00000112467788888988888888776 8899999987654 4443222222
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016069 132 IEEYYSGRFLVVASGETS 149 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s 149 (396)
.++++|.||+|+|..+
T Consensus 149 --~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 149 --DILEANVVILADGVNS 164 (429)
T ss_pred --eEEECCEEEEccCcch
Confidence 6799999999999643
No 115
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.16 E-value=5.6e-10 Score=105.74 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----c--------------------cccc------CC
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKK------YS 50 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g----g--------------------~~~~------~~ 50 (396)
|+. ...+||+|||||++|+++|..|+++|++|+|+|+.+... + .|.. ..
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 444 336899999999999999999999999999999875321 0 0100 00
Q ss_pred cCceeecccc--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCC
Q 016069 51 YDRLRLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS 127 (396)
Q Consensus 51 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~ 127 (396)
+....+.... ....+..... .........+..+.+.+.+.+++.++++ +++++|+++..++ +.+.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g-- 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG-- 153 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence 1111111000 0011110000 0001112456778888887777777666 8999999998765 5677777654
Q ss_pred CCceeeEEEEeCEEEEeecCCC
Q 016069 128 PGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 128 ~g~~~~~~~~~d~vviAtG~~s 149 (396)
.++++|.||.|+|.+|
T Consensus 154 ------~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 ------RRLEAALAIAADGAAS 169 (392)
T ss_pred ------CEEEeCEEEEecCCCc
Confidence 5789999999999765
No 116
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.16 E-value=9.9e-10 Score=108.14 Aligned_cols=137 Identities=21% Similarity=0.295 Sum_probs=86.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc------------------------CCcCceeeccc--
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLA-- 59 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~------------------------~~~~~~~~~~~-- 59 (396)
..+||+|||||++|+++|..|+++|++|+|+|+.+......+. ...........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 3689999999999999999999999999999998744321100 01111222111
Q ss_pred cccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
..+..+.. ......++ ....+..+.+.+.+.+.+. ++++ +++++|++++.++ +.++++..+.. |+. .+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v--~~g~~v~~i~~~~--~~v~v~~~~~~--G~~--~~ 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRV--RFGHEVTALTQDD--DGVTVTLTDAD--GQR--ET 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEE--EcCCEEEEEEEcC--CeEEEEEEcCC--CCE--EE
Confidence 11111110 00000111 2345667778887777664 6555 9999999998876 55677765421 222 68
Q ss_pred EEeCEEEEeecCCCC
Q 016069 136 YSGRFLVVASGETSN 150 (396)
Q Consensus 136 ~~~d~vviAtG~~s~ 150 (396)
+++|+||.|+|..|.
T Consensus 161 i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 VRARYVVGCDGANSF 175 (538)
T ss_pred EEEEEEEecCCCchh
Confidence 999999999998664
No 117
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.15 E-value=6.3e-10 Score=105.24 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=83.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCc----Cceeec------ccc-ccccCCCCCCCCCCCC-
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSY----DRLRLH------LAK-QFCQLPHLPFPSSYPM- 76 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~----~~~~~~------~~~-~~~~~~~~~~~~~~~~- 76 (396)
||+|||||++|+++|..|++.|++|+|+|+.+..++......+ +.+.+. ... ..+...........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999998776652221111 101000 000 0000011000001111
Q ss_pred CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
...+..+.+++.+.+.+.++. ...++|+++..+. .+.+.|++.++ ..++++.||+|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 256788888988888877765 4567888887652 35677777654 5799999999999755
No 118
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.13 E-value=4.9e-10 Score=106.60 Aligned_cols=132 Identities=16% Similarity=0.171 Sum_probs=82.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------------Cccccc---------CCcC-----------c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------------ASIWKK---------YSYD-----------R 53 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~-------------gg~~~~---------~~~~-----------~ 53 (396)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. +..... ..++ .
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999987521 000000 0011 1
Q ss_pred eeecccccc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCc
Q 016069 54 LRLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (396)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~ 130 (396)
+........ ..+...... ........+..+.+.+.+.+.+.++++ ++++++++++.++ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGL--LANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 111101000 000000000 001112445667777776666666555 8999999998765 5677877664
Q ss_pred eeeEEEEeCEEEEeecCCCC
Q 016069 131 VIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 131 ~~~~~~~~d~vviAtG~~s~ 150 (396)
.++++|.||.|+|.+|.
T Consensus 153 ---~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 ---RQLRAPLVVAADGANSA 169 (405)
T ss_pred ---CEEEeCEEEEecCCCch
Confidence 57999999999998764
No 119
>PRK07045 putative monooxygenase; Reviewed
Probab=99.12 E-value=1.3e-09 Score=103.13 Aligned_cols=134 Identities=24% Similarity=0.265 Sum_probs=82.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----Cc---------------cccc---C---CcCceeeccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----AS---------------IWKK---Y---SYDRLRLHLAKQ 61 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~----gg---------------~~~~---~---~~~~~~~~~~~~ 61 (396)
.+||+||||||+|+++|..|+++|++|+|+|+.+.. ++ .|.. . ....+.......
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 589999999999999999999999999999987743 11 0100 0 001111111111
Q ss_pred -cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHh-cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEe
Q 016069 62 -FCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (396)
Q Consensus 62 -~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 138 (396)
+..+..... .........+..+.+.+.+.+.. .++++ +++++|+++..+++...+.|++.++ .++++
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~~ 154 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRL--RFETSIERIERDADGTVTSVTLSDG--------ERVAP 154 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeE--EeCCEEEEEEECCCCcEEEEEeCCC--------CEEEC
Confidence 111110000 00111124567777777766544 34444 9999999998865333345776654 57899
Q ss_pred CEEEEeecCCCC
Q 016069 139 RFLVVASGETSN 150 (396)
Q Consensus 139 d~vviAtG~~s~ 150 (396)
|+||.|+|..|.
T Consensus 155 ~~vIgADG~~S~ 166 (388)
T PRK07045 155 TVLVGADGARSM 166 (388)
T ss_pred CEEEECCCCChH
Confidence 999999997663
No 120
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.10 E-value=1.2e-09 Score=104.29 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=82.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC----CCcccccC--------------CcCceeecccccc-ccCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC----YASIWKKY--------------SYDRLRLHLAKQF-CQLP 66 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~----~gg~~~~~--------------~~~~~~~~~~~~~-~~~~ 66 (396)
..+||+||||||+|+++|..|+++|++|+|+|+... .|+..... ....+.+..+... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 358999999999999999999999999999998742 12211000 0111111111110 0000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcC-CCCceEEEEeecC---CCCceeeEEEEeCEEE
Q 016069 67 HLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE-ATNMWNVKASNLL---SPGRVIEEYYSGRFLV 142 (396)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~v~~~~~~---~~g~~~~~~~~~d~vv 142 (396)
.............+..+.++|.+.+.+.|.++ +. ..+++++... .++.+.|++.+.. ..|+. .++++|.||
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~-~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~v~a~~VI 192 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--IN-GLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP--KTLEVDAVI 192 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Ee-ceEEEEEeccCCCCcEEEEEEeccccccCCCc--cEEEeCEEE
Confidence 00000001112688999999999898888775 54 4577776432 1245666654310 00111 579999999
Q ss_pred EeecCCC
Q 016069 143 VASGETS 149 (396)
Q Consensus 143 iAtG~~s 149 (396)
.|+|..|
T Consensus 193 gADG~~S 199 (450)
T PLN00093 193 GADGANS 199 (450)
T ss_pred EcCCcch
Confidence 9999655
No 121
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=1.5e-09 Score=103.61 Aligned_cols=136 Identities=21% Similarity=0.286 Sum_probs=81.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----Ccc----------------ccc-----CCcCceeeccc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASI----------------WKK-----YSYDRLRLHLA 59 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~-----gg~----------------~~~-----~~~~~~~~~~~ 59 (396)
..+||+|||||++|+++|..|+++|++|+|+|+.+.. |.. |.. .....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 3689999999999999999999999999999987643 211 100 00011111000
Q ss_pred c--ccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 60 K--QFCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 60 ~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
. ....+....... .......+..+.+.+.+.+.+. ++++ +++++|++++.++ +.+.|++.++. +. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~v~~~~--~~~~v~~~~~~---~~--~~ 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITW--LCPAEVVSVEYQQ--DAATVTLEIEG---KQ--QT 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeeEEEEccCC---cc--eE
Confidence 0 000111000000 0011122345666676666554 4554 8899999998765 55667765421 11 57
Q ss_pred EEeCEEEEeecCCCC
Q 016069 136 YSGRFLVVASGETSN 150 (396)
Q Consensus 136 ~~~d~vviAtG~~s~ 150 (396)
+++|+||.|+|.+|.
T Consensus 168 i~adlvIgADG~~S~ 182 (415)
T PRK07364 168 LQSKLVVAADGARSP 182 (415)
T ss_pred EeeeEEEEeCCCCch
Confidence 999999999997663
No 122
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.10 E-value=9.7e-10 Score=103.99 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=83.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc------------------ccccC-----CcCceeeccccc-c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------------------IWKKY-----SYDRLRLHLAKQ-F 62 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg------------------~~~~~-----~~~~~~~~~~~~-~ 62 (396)
.+||+|||||++|+++|..|+++|++|+|+|+.+.... .|..- .+..+.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 58999999999999999999999999999998764321 11100 011111111110 0
Q ss_pred c-----cCCCCCC-CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEE
Q 016069 63 C-----QLPHLPF-PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (396)
Q Consensus 63 ~-----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~ 136 (396)
. .+..... ........++..+.+.+.+.+.+.+... +++++|++++.++ +.+.|++.++ .++
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 154 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG--------TTL 154 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC--------CEE
Confidence 0 0000000 0001112466777888877777665333 7899999998765 6677877654 579
Q ss_pred EeCEEEEeecCCC
Q 016069 137 SGRFLVVASGETS 149 (396)
Q Consensus 137 ~~d~vviAtG~~s 149 (396)
++|.||.|+|.+|
T Consensus 155 ~a~~vI~AdG~~S 167 (388)
T PRK07494 155 SARLVVGADGRNS 167 (388)
T ss_pred EEeEEEEecCCCc
Confidence 9999999999765
No 123
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.10 E-value=1.1e-09 Score=103.32 Aligned_cols=131 Identities=23% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CC---C-c-cccc---------C-----------CcCceeecccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CY---A-S-IWKK---------Y-----------SYDRLRLHLAK 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~-~~---g-g-~~~~---------~-----------~~~~~~~~~~~ 60 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+ .. | + .... . .+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 11 1 0 0000 0 01111111111
Q ss_pred -ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEe-ecCCCCceeeEEE
Q 016069 61 -QFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYY 136 (396)
Q Consensus 61 -~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~g~~~~~~~ 136 (396)
....+...... ........+..+...|.+.+.+.+ ++. +++++|+.++.++ +.+.++.. ++ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~--~~~~~v~~~~~~~--~~v~v~l~~dG--------~~~ 149 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL--RFGAEVEAVEQDG--DGVTVTLSFDG--------ETL 149 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEE--EcCceEEEEEEcC--CceEEEEcCCC--------cEE
Confidence 11111111111 111223577889999988887765 455 9999999999876 55567777 54 689
Q ss_pred EeCEEEEeecCCC
Q 016069 137 SGRFLVVASGETS 149 (396)
Q Consensus 137 ~~d~vviAtG~~s 149 (396)
++|+||.|+|.+|
T Consensus 150 ~a~llVgADG~~S 162 (387)
T COG0654 150 DADLLVGADGANS 162 (387)
T ss_pred ecCEEEECCCCch
Confidence 9999999999766
No 124
>PRK06126 hypothetical protein; Provisional
Probab=99.10 E-value=2.6e-09 Score=105.51 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=84.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-------------------cc---cCCcC-----c-eee
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-------------------WK---KYSYD-----R-LRL 56 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-------------------~~---~~~~~-----~-~~~ 56 (396)
...+||+|||||++|+++|..|+++|++|+|+|+.+..... +. ....+ . ...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF 84 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence 34689999999999999999999999999999987632210 00 00000 0 000
Q ss_pred c--cccccccCCC--CC----C--------C-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCce
Q 016069 57 H--LAKQFCQLPH--LP----F--------P-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMW 118 (396)
Q Consensus 57 ~--~~~~~~~~~~--~~----~--------~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~ 118 (396)
. ....+..+.. .. . . .......++..+.+.|.+.+.+. ++++ +++++|++++.++ +.+
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v 160 (545)
T PRK06126 85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--DGV 160 (545)
T ss_pred ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--CeE
Confidence 0 0000100000 00 0 0 00112345667777887777654 5555 9999999998765 455
Q ss_pred EEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 119 NVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 119 ~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
.++..+..+ |+. .++++|+||.|+|.+|.
T Consensus 161 ~v~~~~~~~-g~~--~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 161 TATVEDLDG-GES--LTIRADYLVGCDGARSA 189 (545)
T ss_pred EEEEEECCC-CcE--EEEEEEEEEecCCcchH
Confidence 566554222 222 57999999999998763
No 125
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.10 E-value=1.1e-09 Score=104.08 Aligned_cols=130 Identities=22% Similarity=0.297 Sum_probs=84.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCC------c---------------cccc-----CCcCceeeccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYA------S---------------IWKK-----YSYDRLRLHLA 59 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~g------g---------------~~~~-----~~~~~~~~~~~ 59 (396)
+||+|||||++|+++|..|+++| ++|+|+|+.+... + .|.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999985 9999999875321 0 0100 00111111100
Q ss_pred c-------ccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCce
Q 016069 60 K-------QFCQLPHLP-FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (396)
Q Consensus 60 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~ 131 (396)
. ....+.... ..........+..+.+.+.+.+.+.++++ +++++|++++.++ +.+.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 0 000110000 00011123577888898888888777766 8999999998765 5677777654
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016069 132 IEEYYSGRFLVVASGETS 149 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s 149 (396)
.++++|+||.|+|..|
T Consensus 152 --~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 152 --SVLEARLLVAADGARS 167 (403)
T ss_pred --CEEEeCEEEEcCCCCh
Confidence 5789999999999755
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.09 E-value=1.1e-09 Score=103.71 Aligned_cols=131 Identities=19% Similarity=0.295 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----C---------------------cccccC------CcCcee
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----A---------------------SIWKKY------SYDRLR 55 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~----g---------------------g~~~~~------~~~~~~ 55 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|... .+..+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 589999999999999999999999999999987521 1 111100 001111
Q ss_pred ec-cccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 56 LH-LAKQFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 56 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
.. .......+...... ........+..+.+.+.+.+... ++.+ +++++|+++..++ +.+.|.+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------- 153 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------- 153 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC-------
Confidence 00 00000001000000 00111245667777777766655 6555 8899999998765 5677777654
Q ss_pred eEEEEeCEEEEeecCCC
Q 016069 133 EEYYSGRFLVVASGETS 149 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s 149 (396)
.++++|.||.|+|.+|
T Consensus 154 -~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 154 -EEIQAKLVIGADGANS 169 (391)
T ss_pred -CEEEeCEEEEeCCCCc
Confidence 5799999999999765
No 127
>PRK06185 hypothetical protein; Provisional
Probab=99.08 E-value=1.8e-09 Score=102.91 Aligned_cols=140 Identities=21% Similarity=0.379 Sum_probs=83.4
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-----Ccc--------------cccC------CcCcee
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASI--------------WKKY------SYDRLR 55 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~-----gg~--------------~~~~------~~~~~~ 55 (396)
|.+. ..+||+|||||++|+++|..|+++|++|+|+|+.+.. +.. |..- ....+.
T Consensus 1 ~~~~-~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~ 79 (407)
T PRK06185 1 MAEV-ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLR 79 (407)
T ss_pred CCcc-ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEE
Confidence 4433 3689999999999999999999999999999987532 111 1100 011111
Q ss_pred eccccc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCce
Q 016069 56 LHLAKQ-F--CQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (396)
Q Consensus 56 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~ 131 (396)
...... . ..+...........+..+..+.+.+.+.+.+. ++.+ +++++|+++..++ +....|.+.... |+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~~~~~~-~~v~~v~~~~~~--g~- 153 (407)
T PRK06185 80 FEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTL--RMGAEVTGLIEEG-GRVTGVRARTPD--GP- 153 (407)
T ss_pred EEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEE--EeCCEEEEEEEeC-CEEEEEEEEcCC--Cc-
Confidence 111111 0 01111111111122356677888887766654 5555 8899999998764 222223433211 11
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016069 132 IEEYYSGRFLVVASGETS 149 (396)
Q Consensus 132 ~~~~~~~d~vviAtG~~s 149 (396)
.++++|.||.|+|.+|
T Consensus 154 --~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 154 --GEIRADLVVGADGRHS 169 (407)
T ss_pred --EEEEeCEEEECCCCch
Confidence 4799999999999766
No 128
>PRK06753 hypothetical protein; Provisional
Probab=99.08 E-value=1.7e-09 Score=101.80 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=80.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-------------------ccc-----CCcCceeeccccccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAKQFC 63 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-------------------~~~-----~~~~~~~~~~~~~~~ 63 (396)
++|+|||||++|+++|..|+++|++|+|+|+.+..... |.. ...+.+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 48999999999999999999999999999988743211 000 01111111111100
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEE
Q 016069 64 QLPHLPFPSS-YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (396)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vv 142 (396)
.+...+.... .....++..+.+.|.+.+.. . .++++++|++++.++ +.+.+++.++ .++++|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET--DKVTIHFADG--------ESEAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC--CcEEEEECCC--------CEEecCEEE
Confidence 0000011000 11235677777777665442 2 348999999998654 6677887665 578999999
Q ss_pred EeecCCC
Q 016069 143 VASGETS 149 (396)
Q Consensus 143 iAtG~~s 149 (396)
.|+|..|
T Consensus 146 gadG~~S 152 (373)
T PRK06753 146 GADGIHS 152 (373)
T ss_pred ECCCcch
Confidence 9999765
No 129
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.08 E-value=3.7e-09 Score=104.40 Aligned_cols=137 Identities=22% Similarity=0.317 Sum_probs=84.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc--------------CCcCc----------eeec-cc
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYDR----------LRLH-LA 59 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------------~~~~~----------~~~~-~~ 59 (396)
+..+||+||||||+|+++|..|+++|++|+|+|+.+......+. ...+. .... ..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 34689999999999999999999999999999998744221100 00000 0000 00
Q ss_pred cccccCCCCCCC-CCCC--CCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 60 KQFCQLPHLPFP-SSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 60 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
.....+...+.. ...+ ....+..+.++|.+.+.+. ++.+ +++++|++++.++ +.+.++..+.. |. .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~v~v~~~~~~--g~---~~ 171 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDL--RWKNKVTGLEQHD--DGVTLTVETPD--GP---YT 171 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEE--EeCCEEEEEEEcC--CEEEEEEECCC--Cc---EE
Confidence 111111110000 0011 1145667778888777765 4444 9999999998765 55656554321 11 47
Q ss_pred EEeCEEEEeecCCCC
Q 016069 136 YSGRFLVVASGETSN 150 (396)
Q Consensus 136 ~~~d~vviAtG~~s~ 150 (396)
+++|+||.|+|..|.
T Consensus 172 i~ad~vVgADG~~S~ 186 (547)
T PRK08132 172 LEADWVIACDGARSP 186 (547)
T ss_pred EEeCEEEECCCCCcH
Confidence 999999999997663
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.08 E-value=1.5e-09 Score=101.69 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=82.4
Q ss_pred eEEEECCChHHHHHHHHH--HhcCCCeEEEecCCCC--Cc--ccccC-------------CcCceeeccccccccCCCCC
Q 016069 9 EVIIVGAGPSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP 69 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L--~~~g~~v~lie~~~~~--gg--~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 69 (396)
||+|||||+||+++|.+| .+.|.+|+|+|+.... .. +|... .++...+..+......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 899999999999999999 7779999999987755 22 33211 1112221111111000
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 70 FPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 70 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
...+. .+.+..+.+++.+.+...+ .. ++++.|++++..+ ..+.+++.++ .+++++.||.|+|.
T Consensus 77 --~~~~Y~~i~~~~f~~~l~~~~~~~~-~~--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 77 --IDYPYCMIDRADFYEFLLERAAAGG-VI--RLNARVTSIEETG--DGVLVVLADG--------RTIRARVVVDARGP 140 (374)
T ss_pred --cccceEEEEHHHHHHHHHHHhhhCC-eE--EEccEEEEEEecC--ceEEEEECCC--------CEEEeeEEEECCCc
Confidence 01111 3678899999888777444 33 8899999999876 4566788776 68999999999994
No 131
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.06 E-value=1.5e-09 Score=90.04 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-ccccC-CcCceeeccccccc-cCCCCCCCCCCCC--CCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYPM--FVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~ 81 (396)
.+||+||||||+|++||+.|++.|++|+++|++..+|| .|... .++.+.+..+...+ .-...++...-.. ..+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 48999999999999999999999999999999987775 77654 46666655443211 1111122111111 13556
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCce-EEEEe------ecCCCCceeeEEEEeCEEEEeecC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKAS------NLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~------~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
++...|...+-+.|..+ +....|+++-..++ .+. -|.+. .+.. =+. ..+++++||.|||+
T Consensus 97 ~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glH-vDP--l~i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLH-VDP--LTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T--B---EEEEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcC-CCc--ceEEEeEEEeCCCC
Confidence 67677666565567665 88888988876652 221 11111 1100 011 68999999999996
No 132
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.06 E-value=1.3e-09 Score=103.48 Aligned_cols=133 Identities=25% Similarity=0.224 Sum_probs=83.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc------ccc--------CCc----------Cceeecc---c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSY----------DRLRLHL---A 59 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~------~~~--------~~~----------~~~~~~~---~ 59 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ... ..+.... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999998754310 000 000 1111100 0
Q ss_pred cccccCCCC-CCC--CCCC-CCCCHHHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeE
Q 016069 60 KQFCQLPHL-PFP--SSYP-MFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (396)
Q Consensus 60 ~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~ 134 (396)
.....+... ... ...+ ....+..+.+.+.+.+.+.+ +.+ +++++|++++.++ +.+.+++.++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~g--------~ 151 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF--RTSTHVVGIEQDG--DGVTVFDQQG--------N 151 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEE--EeCCEEEEEecCC--CceEEEEcCC--------C
Confidence 000000000 000 0001 12467778888877766553 444 8999999998654 5566776654 5
Q ss_pred EEEeCEEEEeecCCCCC
Q 016069 135 YYSGRFLVVASGETSNP 151 (396)
Q Consensus 135 ~~~~d~vviAtG~~s~p 151 (396)
++.+|.||.|+|.+|..
T Consensus 152 ~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 152 RWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEecCEEEECCCcChHH
Confidence 78999999999976644
No 133
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.05 E-value=1.9e-09 Score=101.87 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=82.3
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--------cccc--c---------CCcC-----------ceeecc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--------SIWK--K---------YSYD-----------RLRLHL 58 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g--------g~~~--~---------~~~~-----------~~~~~~ 58 (396)
||+|||||++|+++|..|+++|++|+|+|+.+..+ .... . ...+ .+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999986431 1010 0 0011 111111
Q ss_pred ccc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeE
Q 016069 59 AKQ--FCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (396)
Q Consensus 59 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~ 134 (396)
... ...+...... ......+++..+.+.+.+.+.+.+ +.+ +++++|++++.++ +.+.+.+.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~ 148 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG--------Q 148 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC--------C
Confidence 100 0001000000 001122566788888888777765 555 9999999998765 5677777664 5
Q ss_pred EEEeCEEEEeecCCC
Q 016069 135 YYSGRFLVVASGETS 149 (396)
Q Consensus 135 ~~~~d~vviAtG~~s 149 (396)
++.+|.||.|+|.+|
T Consensus 149 ~~~~~~vi~adG~~S 163 (385)
T TIGR01988 149 QLRARLLVGADGANS 163 (385)
T ss_pred EEEeeEEEEeCCCCC
Confidence 689999999999765
No 134
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.05 E-value=3.8e-09 Score=99.93 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=81.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----ccccc--------------CCcCceeeccccccc-cCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SIWKK--------------YSYDRLRLHLAKQFC-QLPHL 68 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g----g~~~~--------------~~~~~~~~~~~~~~~-~~~~~ 68 (396)
+||+||||||+|+++|..|+++|++|+|+|+....+ +.... +...++.+..+.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999875322 11110 011122222221110 00000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEc-CCCCceEEEEeecCC---CCceeeEEEEeCEEEEe
Q 016069 69 PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYD-EATNMWNVKASNLLS---PGRVIEEYYSGRFLVVA 144 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~v~~~~~~~---~g~~~~~~~~~d~vviA 144 (396)
.....+.....+..+.++|...+.+.|+++ +.+ .++++... ..++.+.|+...... .|+. .++++++||.|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~i~a~~VIgA 155 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSGTR--CTLEVDAVIGA 155 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCCCc--cEEEeCEEEEC
Confidence 000111123688899999999888888875 555 47666432 123455565432110 0111 57999999999
Q ss_pred ecCCC
Q 016069 145 SGETS 149 (396)
Q Consensus 145 tG~~s 149 (396)
+|..|
T Consensus 156 DG~~S 160 (398)
T TIGR02028 156 DGANS 160 (398)
T ss_pred CCcch
Confidence 99644
No 135
>PRK07588 hypothetical protein; Provisional
Probab=99.04 E-value=2.4e-09 Score=101.35 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=81.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--c-c---ccc----------------C--CcCceeecccc--c
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--S-I---WKK----------------Y--SYDRLRLHLAK--Q 61 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g--g-~---~~~----------------~--~~~~~~~~~~~--~ 61 (396)
+||+|||||++|+++|..|+++|++|+|+|+.+... | . |.. . ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 489999999999999999999999999999876431 1 1 110 0 01111111110 0
Q ss_pred cccCCCCCCCCCC--C-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEe
Q 016069 62 FCQLPHLPFPSSY--P-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (396)
Q Consensus 62 ~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 138 (396)
...+......... . ...++..+...+.+.... +++ ++++++|++++.++ +.+.|++.++ .++++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR--DGVRVTFERG--------TPRDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC--CeEEEEECCC--------CEEEe
Confidence 1111100010000 0 124566777766554332 444 49999999998765 6677888765 56799
Q ss_pred CEEEEeecCCCCCC
Q 016069 139 RFLVVASGETSNPF 152 (396)
Q Consensus 139 d~vviAtG~~s~p~ 152 (396)
|.||.|+|.+|.-+
T Consensus 148 d~vIgADG~~S~vR 161 (391)
T PRK07588 148 DLVIGADGLHSHVR 161 (391)
T ss_pred CEEEECCCCCccch
Confidence 99999999766443
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=99.04 E-value=3.9e-09 Score=98.28 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=80.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---------CcccccC---------Cc-Cceeecccc--cccc-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---------ASIWKKY---------SY-DRLRLHLAK--QFCQ- 64 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~---------gg~~~~~---------~~-~~~~~~~~~--~~~~- 64 (396)
++||+||||||+|+++|..|+++ ++|+++|+.+.. |+....+ .. +......+. ....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 37999999999999999999999 999999987632 2211100 00 000000000 0000
Q ss_pred -CCC-CCCCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEE
Q 016069 65 -LPH-LPFPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (396)
Q Consensus 65 -~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~v 141 (396)
+.. ......... ..++..+.+.+.+.+ ..++++ ++++.++++...+ +.|.|+..+. |+. .++++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~---g~~--~~i~a~~v 149 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEV--YHNSLCRKIWRED--DGYHVIFRAD---GWE--QHITARYL 149 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEE--EcCCEEEEEEEcC--CEEEEEEecC---CcE--EEEEeCEE
Confidence 000 000001011 267788888777643 446555 8999999998765 5677776322 121 47899999
Q ss_pred EEeecCCCC
Q 016069 142 VVASGETSN 150 (396)
Q Consensus 142 viAtG~~s~ 150 (396)
|.|+|..|.
T Consensus 150 V~AdG~~S~ 158 (351)
T PRK11445 150 VGADGANSM 158 (351)
T ss_pred EECCCCCcH
Confidence 999997653
No 137
>PRK07236 hypothetical protein; Provisional
Probab=99.04 E-value=4.2e-09 Score=99.48 Aligned_cols=137 Identities=14% Similarity=0.099 Sum_probs=79.3
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC----Cc-c-ccc---------CCcCceeecccc---cc
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----AS-I-WKK---------YSYDRLRLHLAK---QF 62 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~----gg-~-~~~---------~~~~~~~~~~~~---~~ 62 (396)
|..++ .++|+|||||++|+++|..|+++|++|+|+|+.+.. |+ . ... ...+......+. .+
T Consensus 1 ~~~~~-~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 1 MTHMS-GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCC-CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence 55443 589999999999999999999999999999987631 11 0 000 000000000000 00
Q ss_pred ccCCCCCCC-CCC-CCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCE
Q 016069 63 CQLPHLPFP-SSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRF 140 (396)
Q Consensus 63 ~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~ 140 (396)
......... ... .....+..+.+.+.+ .+. ...++++++|+++..++ +.++++..++ .++++|.
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~ad~ 145 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG--------RRETADL 145 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC--------CEEEeCE
Confidence 000000000 000 011234445444433 222 12359999999998765 5677887765 6789999
Q ss_pred EEEeecCCCCCC
Q 016069 141 LVVASGETSNPF 152 (396)
Q Consensus 141 vviAtG~~s~p~ 152 (396)
||.|.|..|.-+
T Consensus 146 vIgADG~~S~vR 157 (386)
T PRK07236 146 LVGADGGRSTVR 157 (386)
T ss_pred EEECCCCCchHH
Confidence 999999876443
No 138
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.03 E-value=3.4e-09 Score=99.59 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=83.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC-------Cc----------------cccc-----CCcCceeeccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------AS----------------IWKK-----YSYDRLRLHLA 59 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~-------gg----------------~~~~-----~~~~~~~~~~~ 59 (396)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999975310 11 1210 01122222111
Q ss_pred c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEE
Q 016069 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (396)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~ 136 (396)
. ....+... ........+.+..+.+.|.+.+.+.+ +.. +++++++++..++ +.+.+.+.+ .++
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~---------~~~ 147 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITL--IDNNQYQEVISHN--DYSIIKFDD---------KQI 147 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEE--ECCCeEEEEEEcC--CeEEEEEcC---------CEE
Confidence 1 11111110 00011123577888888888777764 444 8899999997765 556677643 579
Q ss_pred EeCEEEEeecCCCCC
Q 016069 137 SGRFLVVASGETSNP 151 (396)
Q Consensus 137 ~~d~vviAtG~~s~p 151 (396)
++|.||.|+|..|.-
T Consensus 148 ~adlvIgADG~~S~v 162 (374)
T PRK06617 148 KCNLLIICDGANSKV 162 (374)
T ss_pred eeCEEEEeCCCCchh
Confidence 999999999976643
No 139
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.03 E-value=2.9e-09 Score=100.74 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc---cccc----------------CCcCceee-c-cccccccC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IWKK----------------YSYDRLRL-H-LAKQFCQL 65 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg---~~~~----------------~~~~~~~~-~-~~~~~~~~ 65 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|.. ...+.+.. . .+.....+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 57999999999999999999999999999998765421 1110 00000000 0 00000000
Q ss_pred CC-----CC---CCCCCC---CCCCHHHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceee
Q 016069 66 PH-----LP---FPSSYP---MFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (396)
Q Consensus 66 ~~-----~~---~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~ 133 (396)
.. .. .....+ ....+..+.+.+.+.+.+.+ +.+ + +++|+++...+ +.+.|++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g-------- 151 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG-------- 151 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC--------
Confidence 00 00 000011 11346778888877777765 554 5 88999987654 5677877664
Q ss_pred EEEEeCEEEEeecCCCC
Q 016069 134 EYYSGRFLVVASGETSN 150 (396)
Q Consensus 134 ~~~~~d~vviAtG~~s~ 150 (396)
.++++|+||.|+|.+|.
T Consensus 152 ~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QVLRADLVVGADGAHSW 168 (388)
T ss_pred CEEEeeEEEEeCCCCch
Confidence 57999999999997653
No 140
>PRK09126 hypothetical protein; Provisional
Probab=99.03 E-value=3.7e-09 Score=100.16 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=79.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC--------Cc---cccc--------CCcCc-----------eee
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYDR-----------LRL 56 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~--------gg---~~~~--------~~~~~-----------~~~ 56 (396)
++||+|||||++|+++|..|+++|++|+|+|+.+.. |. .+.. ..++. ...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 489999999999999999999999999999987642 21 0000 01111 111
Q ss_pred cccccc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-hcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEYLDHYVS-HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
...... ..+..... ........++..+.+.+.+.+. ..++.+ +++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIEL--LTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEE--EcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 100000 00000000 0001111344556665554443 346555 9999999998765 5677777654
Q ss_pred eEEEEeCEEEEeecCCC
Q 016069 133 EEYYSGRFLVVASGETS 149 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s 149 (396)
.++++|+||.|+|..|
T Consensus 152 -~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 152 -RRLTARLLVAADSRFS 167 (392)
T ss_pred -CEEEeCEEEEeCCCCc
Confidence 6799999999999655
No 141
>PLN02697 lycopene epsilon cyclase
Probab=99.02 E-value=5.7e-09 Score=100.93 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=81.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---CcccccCCcCceee------ccccccccCCCC-CCCCCCC-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---ASIWKKYSYDRLRL------HLAKQFCQLPHL-PFPSSYP- 75 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~---gg~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~- 75 (396)
.+||+||||||+|+++|..|++.|++|+|+|+.... .|.|... ...+.+ ..+.....++.. ......+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 589999999999999999999999999999976433 2344311 000000 000000001100 0000111
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEE-EEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 76 MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV-KASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
..+.+..+.+.+.+.+.+.++. +.+++|+++..++ +.+.+ .+.++ .++.++.||+|+|..+
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG--------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG--------RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence 1267788888888888777765 4778999988754 44433 34443 6799999999999866
No 142
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.01 E-value=4.8e-09 Score=99.28 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=79.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC---C----cc--------------ccc-----CCcCceeecccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---A----SI--------------WKK-----YSYDRLRLHLAK 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~---g----g~--------------~~~-----~~~~~~~~~~~~ 60 (396)
++||+|||||++|+++|..|++.|++|+|+|+.+.. + +. |.. .......+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999988631 1 11 100 011111111111
Q ss_pred ccccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEE-cCCCCceEEEEe-ecCCCCceeeEEEE
Q 016069 61 QFCQLPHLPFPSSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASY-DEATNMWNVKAS-NLLSPGRVIEEYYS 137 (396)
Q Consensus 61 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~v~~~-~~~~~g~~~~~~~~ 137 (396)
....+......... .....+..+.+.+.+.+...++++ ++++++++++. ++ +...|+.. ++ +. .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~~--~~~~V~~~~~G----~~--~~i~ 151 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFDS--DRPYVTYEKDG----EE--HRLD 151 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecCC--CceEEEEEcCC----eE--EEEE
Confidence 11111100000000 011234566666665566667666 99999998875 33 33345553 33 22 5799
Q ss_pred eCEEEEeecCCCCC
Q 016069 138 GRFLVVASGETSNP 151 (396)
Q Consensus 138 ~d~vviAtG~~s~p 151 (396)
+|+||.|+|..|.-
T Consensus 152 ad~vVgADG~~S~v 165 (392)
T PRK08243 152 CDFIAGCDGFHGVS 165 (392)
T ss_pred eCEEEECCCCCCch
Confidence 99999999987643
No 143
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.01 E-value=3.5e-09 Score=101.58 Aligned_cols=136 Identities=19% Similarity=0.293 Sum_probs=81.6
Q ss_pred CeEEEECCChHHHHHHHHHHh----cCCCeEEEecCC--CCC-----------------------------cccccC---
Q 016069 8 VEVIIVGAGPSGLATAACLSL----QSIPYVILEREN--CYA-----------------------------SIWKKY--- 49 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~----~g~~v~lie~~~--~~g-----------------------------g~~~~~--- 49 (396)
+||+|||||++|+++|..|++ +|++|+|+|+.+ ..- |.|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999843 210 011100
Q ss_pred ---CcCceeeccccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC-cceeeeceEEEEEEEc-----CCCCce
Q 016069 50 ---SYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNI-VPSIRYQRSVESASYD-----EATNMW 118 (396)
Q Consensus 50 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~v~~i~~~-----~~~~~~ 118 (396)
.+..+....... ...+.............++..+...|.+.+.+.+- .+.++++++|++++.. +....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 001111110000 01111110000111124667788888777766540 2334999999999752 123456
Q ss_pred EEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 119 NVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 119 ~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
+|++.++ .++++|+||.|+|..|.-
T Consensus 161 ~v~~~~g--------~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDG--------QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCC--------CEEEeeEEEEecCCCChh
Confidence 7777665 679999999999976643
No 144
>PRK07538 hypothetical protein; Provisional
Probab=98.99 E-value=3.1e-08 Score=94.42 Aligned_cols=137 Identities=20% Similarity=0.206 Sum_probs=81.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----cc--ccc--------CC----------cCceeecccc--c
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YS----------YDRLRLHLAK--Q 61 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g----g~--~~~--------~~----------~~~~~~~~~~--~ 61 (396)
+||+|||||++|+++|..|+++|++|+|+|+.+... |. +.. .. ...+...... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999876432 10 000 00 0111111100 0
Q ss_pred cccCCCCC-CCCCCCC-CCCHHHHHHHHHHHHHh-cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEe
Q 016069 62 FCQLPHLP-FPSSYPM-FVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (396)
Q Consensus 62 ~~~~~~~~-~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 138 (396)
++..+... .....+. .+++..+.+.|.+.+.+ .+. ..++++++|+++..++ +...+...++.. |+. .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~-g~~--~~~~a 154 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAG-GDL--VSVRG 154 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCC-Ccc--ceEEe
Confidence 00000000 0000111 25678888888766644 453 2349999999998765 334455544321 222 58999
Q ss_pred CEEEEeecCCCC
Q 016069 139 RFLVVASGETSN 150 (396)
Q Consensus 139 d~vviAtG~~s~ 150 (396)
|.||.|+|..|.
T Consensus 155 dlvIgADG~~S~ 166 (413)
T PRK07538 155 DVLIGADGIHSA 166 (413)
T ss_pred eEEEECCCCCHH
Confidence 999999998664
No 145
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.99 E-value=5.5e-09 Score=98.60 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC--C--C---c-----ccc--------cCCcCce-----------e
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC--Y--A---S-----IWK--------KYSYDRL-----------R 55 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~--~--g---g-----~~~--------~~~~~~~-----------~ 55 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+. . . + .+. ...++.+ .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 37999999999999999999999999999997641 1 0 0 000 0011111 1
Q ss_pred ec-cccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 56 LH-LAKQFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 56 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
.. .......+...... ........+..+...+.+.+... ++++ +++++|++++.++ +.+++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTL--MCPEKLADLEFSA--EGNRVTLESG------- 151 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEE--ECCCceeEEEEcC--CeEEEEECCC-------
Confidence 00 00000000000000 00011123345555555544443 4444 8999999998865 5567888765
Q ss_pred eEEEEeCEEEEeecCCCC
Q 016069 133 EEYYSGRFLVVASGETSN 150 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s~ 150 (396)
.++++|.||.|+|..|.
T Consensus 152 -~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 152 -AEIEAKWVIGADGANSQ 168 (384)
T ss_pred -CEEEeeEEEEecCCCch
Confidence 67999999999997664
No 146
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=2.7e-09 Score=90.67 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeec----------------------------ccc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH----------------------------LAK 60 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~----------------------------~~~ 60 (396)
+|+|||+|++|++||..|+..|.+|+++||+..+||..-..+-+.-..+ ...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6999999999999999999999999999999988874432221111111 111
Q ss_pred ccccCCCC---CCCCCC--CCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 61 QFCQLPHL---PFPSSY--PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 61 ~~~~~~~~---~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
.++++... +..... ...+....+.+++ +. ++++ .++++|+.+...+ +.|+++++++. +.
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L---At--dL~V--~~~~rVt~v~~~~--~~W~l~~~~g~-------~~ 146 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL---AT--DLTV--VLETRVTEVARTD--NDWTLHTDDGT-------RH 146 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHH---hc--cchh--hhhhhhhhheecC--CeeEEEecCCC-------cc
Confidence 22222211 111111 1112222333322 22 4445 8999999998875 88999997752 56
Q ss_pred EEeCEEEEeecC
Q 016069 136 YSGRFLVVASGE 147 (396)
Q Consensus 136 ~~~d~vviAtG~ 147 (396)
..+|.||+|.=+
T Consensus 147 ~~~d~vvla~PA 158 (331)
T COG3380 147 TQFDDVVLAIPA 158 (331)
T ss_pred cccceEEEecCC
Confidence 789999999874
No 147
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.98 E-value=6.2e-09 Score=98.78 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=78.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhc---CCCeEEEecCCCC-----C------cccc--------cCCcCce----------
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ---SIPYVILERENCY-----A------SIWK--------KYSYDRL---------- 54 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~---g~~v~lie~~~~~-----g------g~~~--------~~~~~~~---------- 54 (396)
++||+|||||++|+++|..|+++ |++|+|+|+.... + +.+. ...++.+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 58999999999999999999998 9999999994211 0 0100 0011111
Q ss_pred eecccccc--ccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCc
Q 016069 55 RLHLAKQF--CQLPHLPFPSSY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (396)
Q Consensus 55 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~ 130 (396)
........ ..+......... .....+..+.+.+.+.+.+. ++++ +++++|+++..++ +.|.+++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTL--HCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 00000000 000000000000 11234556666766655543 5554 8899999997654 6677877664
Q ss_pred eeeEEEEeCEEEEeecCCC
Q 016069 131 VIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 131 ~~~~~~~~d~vviAtG~~s 149 (396)
..+++|+||.|+|.+|
T Consensus 154 ---~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 ---ETLTGRLLVAADGSHS 169 (395)
T ss_pred ---CEEEeCEEEEecCCCh
Confidence 5689999999999765
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.98 E-value=5.1e-09 Score=98.88 Aligned_cols=129 Identities=21% Similarity=0.193 Sum_probs=81.1
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCc----------cccc--------CCcC----------ceeeccc
Q 016069 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYD----------RLRLHLA 59 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~~gg----------~~~~--------~~~~----------~~~~~~~ 59 (396)
||+|||||++|+++|..|+++| ++|+|+|+.+...- .+.. ...+ .......
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999998753210 0000 0000 0111000
Q ss_pred c--ccccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 60 K--QFCQLPHLPFPSSY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 60 ~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
. ....+....+.... .....+..+.+.|.+.+.+. ++++ +++++|+++..++ +.+++++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~ 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG--------QQ 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC--------CE
Confidence 0 00000000000000 11245677888888777763 6665 8899999998765 5677777654 56
Q ss_pred EEeCEEEEeecCCC
Q 016069 136 YSGRFLVVASGETS 149 (396)
Q Consensus 136 ~~~d~vviAtG~~s 149 (396)
+++|.||.|+|.+|
T Consensus 149 ~~ad~vV~AdG~~S 162 (382)
T TIGR01984 149 LRAKLLIAADGANS 162 (382)
T ss_pred EEeeEEEEecCCCh
Confidence 89999999999765
No 149
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.98 E-value=3.2e-09 Score=99.06 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceE-EEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.+...+...+...+++.|+++ +.+++|++++.++ +.|+ |.+.++ .+++|.||+|+|.++
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~g---------~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSDG---------EIRADRVVLAAGAWS 203 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETTE---------EEEECEEEE--GGGH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--ccccccccccc---------ccccceeEecccccc
Confidence 456788888888888888776 9999999999986 7777 888774 499999999999755
No 150
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.96 E-value=7.3e-09 Score=98.52 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=79.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC-CC--CC---------------------cccccC------CcCceee
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL 56 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~-~~--~g---------------------g~~~~~------~~~~~~~ 56 (396)
.+||+|||||++|+++|..|+++|++|+|+|+. +. .+ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999985 21 11 111100 0111111
Q ss_pred cccccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCcee
Q 016069 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (396)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~ 132 (396)
...... ..+....... .......+..+.+.+.+.+.+. ++++ +++++|++++.++ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTL--LMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEE--EcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 111100 0000000000 0011233455666666655543 4444 8999999998765 5566777665
Q ss_pred eEEEEeCEEEEeecCCC
Q 016069 133 EEYYSGRFLVVASGETS 149 (396)
Q Consensus 133 ~~~~~~d~vviAtG~~s 149 (396)
..+++|.||.|+|..|
T Consensus 153 -~~~~a~lvIgADG~~S 168 (405)
T PRK08850 153 -QALTAKLVVGADGANS 168 (405)
T ss_pred -CEEEeCEEEEeCCCCC
Confidence 6799999999999755
No 151
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.96 E-value=7.5e-09 Score=90.69 Aligned_cols=145 Identities=21% Similarity=0.359 Sum_probs=95.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC--Cc---------------------------ccccCC-
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY--AS---------------------------IWKKYS- 50 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~--gg---------------------------~~~~~~- 50 (396)
|+++....+++|||||..|+++|++|+++|.++.++|+-+.. .| .|+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 455666789999999999999999999999999999975511 11 121110
Q ss_pred cCceeec---------------------------------cccc-cccCC-CCCCCCCC-------CCCCCHHHHHHHHH
Q 016069 51 YDRLRLH---------------------------------LAKQ-FCQLP-HLPFPSSY-------PMFVSRAQFIEYLD 88 (396)
Q Consensus 51 ~~~~~~~---------------------------------~~~~-~~~~~-~~~~~~~~-------~~~~~~~~~~~~l~ 88 (396)
..+..+. .... --.++ ..+.++++ .++.....-+..++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 0000000 0000 00122 23333332 23456678888999
Q ss_pred HHHHhcCCcceeeeceEEEEEEEcCC-CCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 89 HYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
..+++.|... +.+.+|..+...++ +....|.|.++ ..+.++.+|+++|+|....+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g--------s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG--------SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC--------CeeecceEEEEecHHHHhhcCc
Confidence 9999999877 89999988876543 34456777775 5699999999999987666664
No 152
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.96 E-value=8.1e-09 Score=97.61 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=82.7
Q ss_pred EEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCC-----------cCceeeccc---c----ccccCC------
Q 016069 11 IIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYS-----------YDRLRLHLA---K----QFCQLP------ 66 (396)
Q Consensus 11 vIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~-----------~~~~~~~~~---~----~~~~~~------ 66 (396)
+|||||++|+++|..|+++|.+|+|+|+.+..|+.+.... .+.+....+ . .+..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999987776432110 000000000 0 000000
Q ss_pred -----CCCCC--C---CCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEE
Q 016069 67 -----HLPFP--S---SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (396)
Q Consensus 67 -----~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~ 136 (396)
..+.. . .++.......+.+.+.+.+++.++.+ ++++.|+++..++ +.|.+.+. + ..+
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~-~--------~~i 147 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETS-G--------GEY 147 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEEC-C--------cEE
Confidence 00000 0 01111234677888888888888766 9999999997654 56777763 2 568
Q ss_pred EeCEEEEeecCCCCCC
Q 016069 137 SGRFLVVASGETSNPF 152 (396)
Q Consensus 137 ~~d~vviAtG~~s~p~ 152 (396)
.+|.||+|+|..+.|.
T Consensus 148 ~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EADKVILATGGLSYPQ 163 (400)
T ss_pred EcCEEEECCCCcccCC
Confidence 9999999999876553
No 153
>PRK05868 hypothetical protein; Validated
Probab=98.96 E-value=1.6e-08 Score=94.78 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=77.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc---cc--cc-------------------CCcCceeeccccc--
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IW--KK-------------------YSYDRLRLHLAKQ-- 61 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg---~~--~~-------------------~~~~~~~~~~~~~-- 61 (396)
+||+|||||++|+++|..|+++|++|+|+|+.+.... .. .. ..........+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4899999999999999999999999999998764321 00 00 0111111111110
Q ss_pred cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEE
Q 016069 62 FCQLPH-LPFPSSY--PM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (396)
Q Consensus 62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 137 (396)
+..... .+..... .. ...+..+.+.+.+.+ ..++++ +++++|++++.++ +.++|+..++ .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i--~~~~~v~~i~~~~--~~v~v~~~dg--------~~~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEY--LFDDSISTLQDDG--DSVRVTFERA--------AARE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEE--EeCCEEEEEEecC--CeEEEEECCC--------CeEE
Confidence 000000 0000000 00 123455555554322 234444 9999999998654 6677887775 5689
Q ss_pred eCEEEEeecCCCCC
Q 016069 138 GRFLVVASGETSNP 151 (396)
Q Consensus 138 ~d~vviAtG~~s~p 151 (396)
+|.||.|+|..|.-
T Consensus 149 adlvIgADG~~S~v 162 (372)
T PRK05868 149 FDLVIGADGLHSNV 162 (372)
T ss_pred eCEEEECCCCCchH
Confidence 99999999987643
No 154
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.96 E-value=2e-08 Score=100.11 Aligned_cols=142 Identities=23% Similarity=0.298 Sum_probs=84.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCC--c-----------------cccc-----CCcCceeecccc-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYA--S-----------------IWKK-----YSYDRLRLHLAK- 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~-g~~v~lie~~~~~g--g-----------------~~~~-----~~~~~~~~~~~~- 60 (396)
++||+||||||+||++|..|+++ |++|+|||+.+... | .|.. ..........+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 68999999999999999999995 99999999876321 1 0000 000111111000
Q ss_pred ----cccc---CCCCCCC-CCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCC-CCceEEEEeecCC--C
Q 016069 61 ----QFCQ---LPHLPFP-SSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLS--P 128 (396)
Q Consensus 61 ----~~~~---~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~~~~--~ 128 (396)
.+.. +...... ...+ ...++..+.+.|.+.+.+.+..+.+++++++++++.++. ...+++++.+..+ .
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0000 0000000 0011 134566788888887777664444488999999987642 2346666654210 1
Q ss_pred CceeeEEEEeCEEEEeecCCCC
Q 016069 129 GRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 129 g~~~~~~~~~d~vviAtG~~s~ 150 (396)
|++ .++++|+||.|.|..|.
T Consensus 192 g~~--~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 192 GEE--ETVRAKYVVGCDGARSR 211 (634)
T ss_pred Cce--EEEEeCEEEECCCCchH
Confidence 222 68999999999998763
No 155
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.93 E-value=1.4e-08 Score=95.84 Aligned_cols=136 Identities=16% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC------C-ccccc---------C----------CcCceeecccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY------A-SIWKK---------Y----------SYDRLRLHLAK 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~------g-g~~~~---------~----------~~~~~~~~~~~ 60 (396)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + +.... . ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999987731 1 11000 0 11111111111
Q ss_pred ccccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEe-ecCCCCceeeEEEEe
Q 016069 61 QFCQLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSG 138 (396)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~-~~~~~g~~~~~~~~~ 138 (396)
....+........... ......+...+.+.+...+..+ +++.+++.+...+ .....|+.. ++.+ .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g~~------~~i~a 152 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDGER------HRLDC 152 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECCeE------EEEEe
Confidence 1111100000000000 1134456666666666666555 8888877764422 133346664 4321 47899
Q ss_pred CEEEEeecCCCCC
Q 016069 139 RFLVVASGETSNP 151 (396)
Q Consensus 139 d~vviAtG~~s~p 151 (396)
|.||.|+|.+|.-
T Consensus 153 dlvIGADG~~S~V 165 (390)
T TIGR02360 153 DFIAGCDGFHGVS 165 (390)
T ss_pred CEEEECCCCchhh
Confidence 9999999987743
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.93 E-value=8.4e-09 Score=99.98 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-CCCccccc---------CCcCcee-e-----cc-ccccccCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWKK---------YSYDRLR-L-----HL-AKQFCQLPHLP 69 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~-~~gg~~~~---------~~~~~~~-~-----~~-~~~~~~~~~~~ 69 (396)
.+||+|||||+||+.||..+++.|.+|+|+|+.. .+|+.-.. ...+.+. + .. ......+....
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLN 83 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecc
Confidence 5999999999999999999999999999999873 44431110 0000000 0 00 00000000000
Q ss_pred ---CCC-C-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEE
Q 016069 70 ---FPS-S-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 70 ---~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
.+. + .....++..+...+.+.+.+. ++. .++..|+++..++ +....|.+.++ ..+.++.||+
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG--------~~I~Ak~VIl 151 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG--------LEFRAKAVVL 151 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC--------CEEECCEEEE
Confidence 000 0 001245556667776666654 555 4677888887654 23333666654 6799999999
Q ss_pred eecCCC
Q 016069 144 ASGETS 149 (396)
Q Consensus 144 AtG~~s 149 (396)
|||.+.
T Consensus 152 ATGTFL 157 (618)
T PRK05192 152 TTGTFL 157 (618)
T ss_pred eeCcch
Confidence 999643
No 157
>PRK06996 hypothetical protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=96.12 Aligned_cols=132 Identities=18% Similarity=0.259 Sum_probs=83.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcC----CCeEEEecCCCCC---------------------cccccCCc--Cceeecc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSY--DRLRLHL 58 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g----~~v~lie~~~~~g---------------------g~~~~~~~--~~~~~~~ 58 (396)
..+||+||||||+|+++|..|+++| ++|+|+|+.+... |.|..... .......
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 3589999999999999999999987 4699999864211 11221111 1111110
Q ss_pred ccc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeE
Q 016069 59 AKQ----FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (396)
Q Consensus 59 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~ 134 (396)
... .+.......+. ....+++..+.+.|.+.+...++.+ ++++++++++.+. +.++++..++. |+ .
T Consensus 90 ~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~--g~---~ 159 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQ--GA---R 159 (398)
T ss_pred CCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCC--cc---e
Confidence 000 00111111110 1113567788888888888877655 8899999997655 66777766532 12 4
Q ss_pred EEEeCEEEEeecC
Q 016069 135 YYSGRFLVVASGE 147 (396)
Q Consensus 135 ~~~~d~vviAtG~ 147 (396)
++++|+||.|+|.
T Consensus 160 ~i~a~lvIgADG~ 172 (398)
T PRK06996 160 TLRARIAVQAEGG 172 (398)
T ss_pred EEeeeEEEECCCC
Confidence 7999999999995
No 158
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.89 E-value=3.7e-09 Score=75.61 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=58.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPR 267 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (396)
+++|||+|.+|+|+|..|++.|.+||++++++ .+++..+.+....+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~~--------------------------------- 46 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKIL--------------------------------- 46 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHHH---------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHHH---------------------------------
Confidence 68999999999999999999999999999999 44455555444433
Q ss_pred CCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC--e--EEecCC
Q 016069 268 EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENG 315 (396)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~--~--v~~~~g 315 (396)
.+.+++.+|+++.+ +++++.+ + |.++||
T Consensus 47 --------------------~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 47 --------------------EEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp --------------------HHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred --------------------HHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 45677789999998 8887654 3 677665
No 159
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.88 E-value=2.6e-08 Score=94.52 Aligned_cols=135 Identities=21% Similarity=0.153 Sum_probs=82.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC---ccc--cc---------CCcCc----------eeecccccc-
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---SIW--KK---------YSYDR----------LRLHLAKQF- 62 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g---g~~--~~---------~~~~~----------~~~~~~~~~- 62 (396)
.+|+|||||++|+++|..|+++|++|+|+|+.+... ... .. ..++. +........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999876432 100 00 00000 000000000
Q ss_pred --ccCCC--CCCCC-CCCC-CCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEE
Q 016069 63 --CQLPH--LPFPS-SYPM-FVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (396)
Q Consensus 63 --~~~~~--~~~~~-~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~ 135 (396)
..... ..... ..+. ...+..+.+.|.+.+.+. ++.+ +++++|++++.++ +.+.++..++.+ . .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v--~~~~~v~~~~~~~--~~v~v~~~~~~~--~---~~ 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI--KLGAEMTSQRQTG--NSITATIIRTNS--V---ET 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEE--EECCEEEEEecCC--CceEEEEEeCCC--C---cE
Confidence 00000 00000 0011 246778888887766553 5555 9999999998754 556676644321 1 46
Q ss_pred EEeCEEEEeecCCCCC
Q 016069 136 YSGRFLVVASGETSNP 151 (396)
Q Consensus 136 ~~~d~vviAtG~~s~p 151 (396)
+++|.||.|+|..|.-
T Consensus 154 ~~adlvIgADG~~S~v 169 (400)
T PRK06475 154 VSAAYLIACDGVWSML 169 (400)
T ss_pred EecCEEEECCCccHhH
Confidence 8999999999987643
No 160
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.87 E-value=4.8e-08 Score=95.28 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
....+...+...+.+.|..+ +.+++|+++..++ +.|.|.+.++. |++ .+++++.||.|+|.|+.
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~--g~~--~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD--GET--RTVRARALVNAAGPWVT 216 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC--CCE--EEEEecEEEECCCccHH
Confidence 33455555666677788776 8899999998764 56778776643 232 57999999999998763
No 161
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=1.9e-08 Score=95.94 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=78.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCcc-----cccC---------CcCce---eeccc----cccccC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASI-----WKKY---------SYDRL---RLHLA----KQFCQL 65 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~~gg~-----~~~~---------~~~~~---~~~~~----~~~~~~ 65 (396)
++|+|||||++|+++|..|+++| ++|+|+|+.+..+.. +..+ ..+.+ ....+ ...+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 47999999999999999999998 699999998754321 0000 00000 00000 000000
Q ss_pred C--------CCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEE
Q 016069 66 P--------HLPFPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (396)
Q Consensus 66 ~--------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~ 136 (396)
. ......... ....+..+.+.+...+.. .. ++++++|++++.++ +.|.+++.++ .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~--v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GI--ASFGKRATQIEEQA--EEVQVLFTDG--------TEY 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ce--EEcCCEEEEEEecC--CcEEEEEcCC--------CEE
Confidence 0 000000001 124566777776654422 22 48899999998765 5688888765 578
Q ss_pred EeCEEEEeecCCCC
Q 016069 137 SGRFLVVASGETSN 150 (396)
Q Consensus 137 ~~d~vviAtG~~s~ 150 (396)
++|.||+|+|.+|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998764
No 162
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.86 E-value=3.3e-08 Score=93.26 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
....+.+.+.+.++..+..+ +.+++|+++..++ +.+.|.+.+ .++.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~---------~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK---------GSYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC---------CEEEeCEEEEecCcchH
Confidence 44566777777777778766 8899999998754 566676654 56899999999997643
No 163
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.86 E-value=3.3e-08 Score=93.14 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
....+...+.+.+.+.+++. +.+++|+++..++ +.|.|++.+ ..+.+|.||+|+|.++...
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~---------g~~~a~~vV~A~G~~~~~l 207 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD---------GTYEAKKLVVSAGAWVKDL 207 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC---------CEEEeeEEEEecCcchhhh
Confidence 44555565656666677665 8899999998765 567777654 4689999999999875443
No 164
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.85 E-value=6.6e-08 Score=94.26 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
..+...+...+.+.|..+ +.+++|+++..++ +.|.+++.+..+ |+. .+++++.||+|+|.|+
T Consensus 155 ~rl~~~l~~~A~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~~-g~~--~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEI--LTRTRVVSARREN--GLWHVTLEDTAT-GKR--YTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEE--EcCcEEEEEEEeC--CEEEEEEEEcCC-CCE--EEEEcCEEEECCCccH
Confidence 444444555577778776 8899999998754 567787765222 222 5799999999999876
No 165
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.85 E-value=2.1e-09 Score=102.51 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=35.1
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcC---ceee----------ccccccccCCCCC--CCC-
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYD---RLRL----------HLAKQFCQLPHLP--FPS- 72 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~---~~~~----------~~~~~~~~~~~~~--~~~- 72 (396)
||||||||++|++||..+++.|.+|+|+|+.+.+||........ .... .....+......+ ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999999999999999999866533211 1110 0000000000000 000
Q ss_pred CCC-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 73 SYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 73 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
+.. .......+...+.+.+.+.++++ ++++.|.++..++ +....|.+.+.. |. .+++++.+|.|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~--g~---~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKS--GR---KEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccc--cc---cccccccccccccc
Confidence 100 12344555566777777778887 9999999998864 233445554321 12 78999999999994
No 166
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.84 E-value=5.9e-08 Score=69.33 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=64.4
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYLD 88 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (396)
+++|||||+.|+.+|..|.+.|.+|+++++.+.+. ....+++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 58999999999999999999999999999987422 123456777777
Q ss_pred HHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeec
Q 016069 89 HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNL 125 (396)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~ 125 (396)
+..++.++++ ++++.+.+++.++ ++ ++|++++|
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~-~~-~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDG-DG-VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEET-TS-EEEEEETS
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeC-CE-EEEEEecC
Confidence 7788888777 9999999999886 23 56777653
No 167
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.83 E-value=5.4e-09 Score=71.76 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=42.1
Q ss_pred EECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccc
Q 016069 12 IVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61 (396)
Q Consensus 12 IIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~ 61 (396)
|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++...+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~ 50 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAH 50 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccE
Confidence 89999999999999999999999999999999988876666666665443
No 168
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.83 E-value=5.5e-08 Score=92.13 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
....+.+.+.+.+++.|+.+ +++++|.+++..+ +.|.|.+.+ .++.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~---------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ---------GEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC---------CEEEeCEEEECCCcch
Confidence 45667777777777778766 8899999998754 557677654 4689999999999865
No 169
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.82 E-value=1.2e-07 Score=92.37 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||||||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 368999999999999999999999999999999887665
No 170
>PLN02661 Putative thiazole synthesis
Probab=98.80 E-value=3.4e-08 Score=89.42 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCc-ccccCC-cCceeeccc-cccccCCCCCCCCCCCCC---CC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYPMF---VS 79 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~-g~~v~lie~~~~~gg-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~ 79 (396)
.+||+|||||++|+++|+.|++. |.+|+|+|+....|| .|.... +....+..+ ..+..-...++... ..| .+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~h 170 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIKH 170 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEecc
Confidence 57999999999999999999986 899999999887655 665432 111111111 01111011111111 111 12
Q ss_pred HHHHHHHHHHHH-HhcCCcceeeeceEEEEEEEcCCCCceEEE------EeecCCC--CceeeEEEEeCEEEEeecC
Q 016069 80 RAQFIEYLDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVK------ASNLLSP--GRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 80 ~~~~~~~l~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~------~~~~~~~--g~~~~~~~~~d~vviAtG~ 147 (396)
..++...+...+ ++.++++ +.++.++++..++ +...-+. ..++.+. .+. ..++++.||+|||+
T Consensus 171 a~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp--~~I~AkaVVlATGh 242 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDP--NVMEAKVVVSSCGH 242 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccce--eEEECCEEEEcCCC
Confidence 334444554433 3456655 8899999987754 2221222 2222110 011 46899999999995
No 171
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.80 E-value=8.8e-08 Score=94.18 Aligned_cols=35 Identities=29% Similarity=0.574 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
.+||+|||||+.|+++|+.|+++|++|+|+|+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 58999999999999999999999999999999753
No 172
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.79 E-value=1.6e-07 Score=90.28 Aligned_cols=135 Identities=19% Similarity=0.149 Sum_probs=81.7
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCCCCCcc--------cccCC-------c-Ccee-------------ec-
Q 016069 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASI--------WKKYS-------Y-DRLR-------------LH- 57 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~~gg~--------~~~~~-------~-~~~~-------------~~- 57 (396)
||||||+|.+|+++|..++++| .+|+|+|+.+..||. |.... . .... .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999998876542 11100 0 0000 00
Q ss_pred ---------ccc--ccccCCCCCC-------CC--CC-------CCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEE
Q 016069 58 ---------LAK--QFCQLPHLPF-------PS--SY-------PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESAS 110 (396)
Q Consensus 58 ---------~~~--~~~~~~~~~~-------~~--~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~ 110 (396)
.+. .++. ....+ .. .. ........+.+.+.+.+++.++++ ++++.|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeE
Confidence 000 0000 00000 00 00 011344678888888888888776 9999999998
Q ss_pred EcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 111 YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
.+++.....+...+.. +.. ..+.++.||+|+|.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~--g~~--~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKG--KGI--YIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCC--CeE--EEEecceEEEecCCCCC
Confidence 7642233334443321 121 45789999999997654
No 173
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.79 E-value=7.5e-08 Score=92.75 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHh----cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 78 VSRAQFIEYLDHYVSH----FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
++...+...+.+.+++ .|..+.++++++|++++... ++.|.|.+.+ .++++|+||+|+|.|+.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------GEIRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------CEEEeCEEEECcChhHH
Confidence 3445666777677777 66444559999999998763 3568888765 56999999999998763
No 174
>PLN02985 squalene monooxygenase
Probab=98.79 E-value=1.4e-07 Score=91.87 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC----c---------------cccc------CCcCceeecccc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK 60 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g----g---------------~~~~------~~~~~~~~~~~~ 60 (396)
..+||+|||||++|+++|..|+++|.+|+|+|+..... | .|.. ....++......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 35899999999999999999999999999999864211 1 1100 011111111111
Q ss_pred cc--ccCCCCC--CCCC-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeE
Q 016069 61 QF--CQLPHLP--FPSS-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (396)
Q Consensus 61 ~~--~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~ 134 (396)
.. ..++... .+.. ......+..+.+.+.+.+.+. ++.. . ..+++++..++ +....|+....+ |++ .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~-~gtvv~li~~~-~~v~gV~~~~~d--G~~--~ 193 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--E-EGTVKSLIEEK-GVIKGVTYKNSA--GEE--T 193 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--E-eeeEEEEEEcC-CEEEEEEEEcCC--CCE--E
Confidence 10 1111000 0000 011345678888888777665 4443 4 44677665543 121124433211 222 5
Q ss_pred EEEeCEEEEeecCCCC
Q 016069 135 YYSGRFLVVASGETSN 150 (396)
Q Consensus 135 ~~~~d~vviAtG~~s~ 150 (396)
++++|.||.|+|.+|.
T Consensus 194 ~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 194 TALAPLTVVCDGCYSN 209 (514)
T ss_pred EEECCEEEECCCCchH
Confidence 6789999999998764
No 175
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=2.5e-08 Score=92.82 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
+...++...+.+.+.+.|..+ +++++|++++..++ +.+.+.+.+++. . +++++||.|.|.++
T Consensus 150 V~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~~------~-~~ak~Vin~AGl~A 211 (429)
T COG0579 150 VDPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGEE------T-LEAKFVINAAGLYA 211 (429)
T ss_pred EcHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCcE------E-EEeeEEEECCchhH
Confidence 455667777777777778777 99999999999862 256677777521 3 99999999999765
No 176
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.75 E-value=1e-07 Score=87.72 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=73.5
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEE-ecCCCCCcccccCCc---------------Cceeeccc---cccccCCCC-
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSY---------------DRLRLHLA---KQFCQLPHL- 68 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~li-e~~~~~gg~~~~~~~---------------~~~~~~~~---~~~~~~~~~- 68 (396)
||+|||||.||+.||+.+++.|.+|+|+ .+.+.++..-..... .+...... .-.+.+.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 8999999999999999999999999999 343433321110000 00000000 000000000
Q ss_pred CCCC-C-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEee
Q 016069 69 PFPS-S-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVAS 145 (396)
Q Consensus 69 ~~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAt 145 (396)
.-+. + .....++..+.+++++.++.. ++. ..+.+|+++..++ +...-|.+.++ ..+.+|.||+||
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~-~~v~GV~~~~g--------~~~~a~~vVlaT 148 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVEN-GKVKGVVTKDG--------EEIEADAVVLAT 148 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECT-TEEEEEEETTS--------EEEEECEEEE-T
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecC-CeEEEEEeCCC--------CEEecCEEEEec
Confidence 0000 1 112467889999998888874 444 4678999998765 35556777765 789999999999
Q ss_pred cC
Q 016069 146 GE 147 (396)
Q Consensus 146 G~ 147 (396)
|.
T Consensus 149 Gt 150 (392)
T PF01134_consen 149 GT 150 (392)
T ss_dssp TT
T ss_pred cc
Confidence 94
No 177
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.74 E-value=8.9e-08 Score=89.50 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=77.3
Q ss_pred eEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCc--ccccCCcCc-----------eeeccccccccCCCCCCCCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDR-----------LRLHLAKQFCQLPHLPFPSS 73 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg--~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 73 (396)
||+|||||+||+++|..|++. |++|+++|+.+..++ +|......- +....+.....+........
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887765 443211100 00001110001110000000
Q ss_pred CC-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 74 YP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 74 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
.+ ..+.+..+.+++.+.+. .. +.++++|++++. +. +++.++ .+++++.||.|+|.. +.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~---~~--i~~~~~V~~v~~----~~--v~l~dg--------~~~~A~~VI~A~G~~--s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFP---EG--VILGRKAVGLDA----DG--VDLAPG--------TRINARSVIDCRGFK--PS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhc---cc--EEecCEEEEEeC----CE--EEECCC--------CEEEeeEEEECCCCC--CC
Confidence 01 12456677777654332 22 377889998842 33 444454 679999999999964 32
Q ss_pred CCCCCCcccc
Q 016069 153 TPDIRGLSSF 162 (396)
Q Consensus 153 ~~~~~g~~~~ 162 (396)
.+...+...+
T Consensus 140 ~~~~~~~Q~f 149 (370)
T TIGR01789 140 AHLKGGFQVF 149 (370)
T ss_pred ccccceeeEE
Confidence 2222355554
No 178
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.74 E-value=9.9e-08 Score=92.17 Aligned_cols=60 Identities=7% Similarity=-0.004 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
+...+...+.+.+.+.|+.+ +.++.|++++.. +.+.|++.+ .++++|.||+|+|.++...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~~---~~~~v~t~~---------g~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEEG---QPAVVRTPD---------GQVTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEeeC---CceEEEeCC---------cEEECCEEEEccccccccc
Confidence 44566666767777788776 899999999752 446677754 4689999999999876543
No 179
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.73 E-value=2.9e-07 Score=87.79 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
...+...+.+.+.+.|+.+ +.+++|++++.++ +.|.+.+.++.. .+. .++++|.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~-~~~--~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAE-HPS--RTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCC-Ccc--ceEecCEEEECCCcCh
Confidence 3455566667777788776 8899999998754 566666544310 000 4689999999999875
No 180
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.71 E-value=2.4e-07 Score=91.46 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=78.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC---CCccccc------C-------------------C-cCceee
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC---YASIWKK------Y-------------------S-YDRLRL 56 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~---~gg~~~~------~-------------------~-~~~~~~ 56 (396)
++.+|+|||||++|+++|..|+++|++|+|+|+.+. ..|.+.. + . ......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 458999999999999999999999999999998651 1111100 0 0 000000
Q ss_pred ----c--cccccccCCCCCCC--CCCC--CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecC
Q 016069 57 ----H--LAKQFCQLPHLPFP--SSYP--MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL 126 (396)
Q Consensus 57 ----~--~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~ 126 (396)
+ .......+...... ...+ ..+++..+.+.|.+. .+.. .++++++|++++.++ +.+++++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 00000011110000 0011 124666777777442 3322 247888999998765 6677777765
Q ss_pred CCCceeeEEEEeCEEEEeecCCCC
Q 016069 127 SPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 127 ~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
.++.+|.||.|.|.+|.
T Consensus 233 -------~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 -------QRYEGDLLVGADGIWSK 249 (668)
T ss_pred -------CEEEcCEEEECCCCCcH
Confidence 56899999999998773
No 181
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.71 E-value=2.7e-07 Score=89.51 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=78.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc-c---------ccCCcCceeec------c-ccccccCCCCC-
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-W---------KKYSYDRLRLH------L-AKQFCQLPHLP- 69 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~-~---------~~~~~~~~~~~------~-~~~~~~~~~~~- 69 (396)
+||+|||||++|+.+|..+++.|.+|+|+|+....+|. . .......+..- . ......+....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999986432211 0 00000110000 0 00000000000
Q ss_pred --CCC-CC-CCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEe
Q 016069 70 --FPS-SY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVA 144 (396)
Q Consensus 70 --~~~-~~-~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviA 144 (396)
.+. +. ....++..+...+...+++. ++. .++..|+++..++++..+.|.+.++ ..+.++.||+|
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILA 149 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIIT 149 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCC--------CEEECCEEEEc
Confidence 010 11 11346677778888877776 444 4566788776542234556777664 57999999999
Q ss_pred ecCCC
Q 016069 145 SGETS 149 (396)
Q Consensus 145 tG~~s 149 (396)
||.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99764
No 182
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.71 E-value=3.6e-07 Score=87.82 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~ 40 (396)
.+||+|||||++|+++|..|++. +.+|+|+|+.+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~ 41 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD 41 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 57999999999999999999998 78999999933
No 183
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.70 E-value=3.6e-07 Score=86.57 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=85.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
.+.+++|||||+.|+.+|..+++.|.+|+|+|+.+++- + ...+++.+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------p--~~D~ei~~ 218 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------P--GEDPEISK 218 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------C--cCCHHHHH
Confidence 35789999999999999999999999999999988432 1 13457888
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~ 156 (396)
.+.+..++.++.. +.++.++.++..+ +...+.+.++.+ .++++|.|++|+| .+|+...+
T Consensus 219 ~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~------~~~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 219 ELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG------GTIEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC------CEEEeeEEEEccC--CccCCCCC
Confidence 8888888766665 9999999998765 336677777643 4789999999999 78887754
No 184
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.69 E-value=2.6e-07 Score=88.02 Aligned_cols=35 Identities=43% Similarity=0.562 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CC-CeEEEecCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ-SI-PYVILEREN 40 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~-g~-~v~lie~~~ 40 (396)
.++||+|||||+.|+++|++|++. |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 368999999999999999999995 85 899999875
No 185
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=6.3e-07 Score=86.96 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999876321 10 12455666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++++ +.++.|.+++...+++...+.+.++ +. .++.+|.||+|+| ..|+...
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g----~~--~~i~~D~vi~a~G--~~p~~~~ 285 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG----EE--KTLEADKVLVSVG--RRPNTEG 285 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC----ce--EEEEeCEEEEeeC--CccCCCC
Confidence 766777778776 9999999997521123222333343 21 5799999999999 6776543
No 186
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.69 E-value=2e-07 Score=89.17 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=77.8
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc--------C-Cc-------Cc-------------------
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------Y-SY-------DR------------------- 53 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~--------~-~~-------~~------------------- 53 (396)
||+|||+|.+|++||..++++|.+|+|+|+.+..||.-.. . .. ..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652110 0 00 00
Q ss_pred --------------------eeecc----ccccccCCCCCCC----C-CC----CCCCCHHHHHHHHHHHHHhcCCccee
Q 016069 54 --------------------LRLHL----AKQFCQLPHLPFP----S-SY----PMFVSRAQFIEYLDHYVSHFNIVPSI 100 (396)
Q Consensus 54 --------------------~~~~~----~~~~~~~~~~~~~----~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (396)
+.... ......+...... . .. ........+...+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i-- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI-- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence 00000 0000000000000 0 00 011256778888888898888666
Q ss_pred eeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 101 RYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 101 ~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
++++.++++..++ +...-+...+... |.. ..++++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~-g~~--~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPAD-GEF--VRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTT-CEE--EEEEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCC-CeE--EEEeeeEEEeccCcccc
Confidence 9999999998865 2222244442211 333 67899999999997654
No 187
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.68 E-value=1.5e-07 Score=95.10 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
....+...+.+.+.+ ++.+ +++++|+++...+ +.|.|.+.++ ..+++|.||+|+|.++.
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g--------~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG--------TLASAPVVVLANGHDAA 464 (662)
T ss_pred CHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC--------cEEECCEEEECCCCCcc
Confidence 445666666666666 6665 8899999998765 6788877654 55789999999998764
No 188
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.68 E-value=2.2e-07 Score=87.15 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+||+|||||++|+++|++|++.|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 189
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.67 E-value=7.2e-07 Score=86.51 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
.+||||||+|++|+++|..++++|.+|+|+|+.+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 58999999999999999999999999999999863
No 190
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.66 E-value=4.8e-07 Score=90.21 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
..+||+|||||+.|+++|+.|++.|++|+|+|+.+..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a 106 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFS 106 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccC
Confidence 3589999999999999999999999999999998633
No 191
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.66 E-value=1e-06 Score=85.37 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=77.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------P--GEDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------C--CCCHHHHHH
Confidence 4689999999999999999999999999999986321 0 012355566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+.+++.++++ +.++.|.+++.++ +.+.+.+.++.. .++.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g~~------~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGGET------ETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCCcE------EEEEeCEEEEecC--CcccCC
Confidence 667777778776 9999999998754 455565544311 4799999999999 667655
No 192
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.66 E-value=3.8e-07 Score=84.60 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=76.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC--cccccCCc---------Cceee---------------------
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--SIWKKYSY---------DRLRL--------------------- 56 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g--g~~~~~~~---------~~~~~--------------------- 56 (396)
||+|||+|.|||++|..|.+. ++|+|+.|.+... ..|-+... +.++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999987 9999999876432 12322100 00000
Q ss_pred ccccccccC--CCCCCCCC--------------------CCCCCCHHHHHHHHHHHHHh-cCCcceeeeceEEEEEEEcC
Q 016069 57 HLAKQFCQL--PHLPFPSS--------------------YPMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDE 113 (396)
Q Consensus 57 ~~~~~~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~i~~~~ 113 (396)
+.+.....+ .+.++..+ ... .++.++...|.+.+++ .++++ ..++.+.++-.++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~v--~e~~~a~~li~~~ 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNITV--LEGAEALDLIIED 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcEE--EecchhhhhhhcC
Confidence 000000000 00111000 011 4778889998887776 56555 8888888776665
Q ss_pred CCCce-EEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 114 ATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 114 ~~~~~-~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
+. .. -+.+.+.. ++. ..++++.||+|||..+
T Consensus 165 ~~-~~~Gv~~~~~~--~~~--~~~~a~~vVLATGG~g 196 (518)
T COG0029 165 GI-GVAGVLVLNRN--GEL--GTFRAKAVVLATGGLG 196 (518)
T ss_pred Cc-eEeEEEEecCC--CeE--EEEecCeEEEecCCCc
Confidence 21 22 24443321 012 6789999999999643
No 193
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.64 E-value=6.9e-08 Score=92.49 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
..+..+.++|.+.+.+.|+++ +. ..|+++..++++....|++.++ .++++|++|.|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~--~~-g~V~~v~~~~~g~i~~v~~~~g--------~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEV--IE-GTVVDVELDEDGRITAVRLDDG--------RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EE-T-EEEEEE-TTSEEEEEEETTS--------EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEE--Ee-CEEEEEEEcCCCCEEEEEECCC--------CEEEEeEEEECCCc
Confidence 577899999999999999885 44 4688888776332334666664 78999999999994
No 194
>PRK07121 hypothetical protein; Validated
Probab=98.62 E-value=1.3e-06 Score=85.27 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=35.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||||||+|.+|+++|.+++++|.+|+|+||....||
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 58999999999999999999999999999999876654
No 195
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.61 E-value=8.5e-07 Score=84.53 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.+.-.....+.+.|... ...++|+++..+. +.|-|...+..+ |++ .+++++.||.|+|.|+
T Consensus 165 RLv~~~a~~A~~~Ga~i--l~~~~v~~~~re~--~v~gV~~~D~~t-g~~--~~ira~~VVNAaGpW~ 225 (532)
T COG0578 165 RLVAANARDAAEHGAEI--LTYTRVESLRREG--GVWGVEVEDRET-GET--YEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHHHHHHHhcccch--hhcceeeeeeecC--CEEEEEEEecCC-CcE--EEEEcCEEEECCCccH
Confidence 34444444566677776 8889999999876 478888888766 454 7899999999999876
No 196
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=7.3e-07 Score=88.36 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=37.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
|+.....+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~ 43 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTR 43 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5555556899999999999999999999999999999986443
No 197
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.60 E-value=8.1e-07 Score=85.84 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
+...+...+.+.+++.|..+ +++++|+++..++ ++.|.+.+.+..+ |+. .++++|+||+|+|.++
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~-g~~--~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRT-GGK--RTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccC-Cce--EEEECCEEEECCCcch
Confidence 44566777777777778766 9999999998754 2457776543221 111 4689999999999876
No 198
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.60 E-value=5.9e-07 Score=84.59 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +.+ ....+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHH
Confidence 3689999999999999999999999999999876321 000 12345566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
+.+.+++.++.+ ++++.|.++..+. +.+.+.+.++ .++.+|.||+|+| ..|+
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vI~a~G--~~p~ 240 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG--------RSIEVDAVIAAAG--LRPN 240 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC--------cEEECCEEEECcC--CCcc
Confidence 667777778776 8899999998654 5566777664 6799999999999 4554
No 199
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.59 E-value=4.3e-07 Score=81.96 Aligned_cols=145 Identities=18% Similarity=0.278 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCcc-cccCC---------cCcee-----eccc-
Q 016069 2 KEQAAGVEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASI-WKKYS---------YDRLR-----LHLA- 59 (396)
Q Consensus 2 ~~~~~~~~vvIIG~G~aGl~~A~~L~~~------g~~v~lie~~~~~gg~-~~~~~---------~~~~~-----~~~~- 59 (396)
...+..+||+|||||||||++|.+|.+. .++|+++|+...+||. ...+. .|.++ ++.+
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~v 150 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPV 150 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccc
Confidence 3334568999999999999999999863 5699999999988872 11111 11110 1100
Q ss_pred -cc----cccCCCCCCCC------CCCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeec-CC
Q 016069 60 -KQ----FCQLPHLPFPS------SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNL-LS 127 (396)
Q Consensus 60 -~~----~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~-~~ 127 (396)
+. +..-..++.|. .-...++-.++..||-+.++++|+++ .-+..+..+-.++++..--|.|.+. .+
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeecccccc
Confidence 00 00001111111 11223567899999999999999886 5554444444444322222333221 00
Q ss_pred -CCc-----eeeEEEEeCEEEEeecCC
Q 016069 128 -PGR-----VIEEYYSGRFLVVASGET 148 (396)
Q Consensus 128 -~g~-----~~~~~~~~d~vviAtG~~ 148 (396)
.|. +++-+++++.-|+|-|+.
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 000 111468999999998864
No 200
>PRK08275 putative oxidoreductase; Provisional
Probab=98.58 E-value=2.1e-06 Score=84.85 Aligned_cols=145 Identities=10% Similarity=0.140 Sum_probs=81.1
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC-CcccccC--CcCc-ee--eccccccc---------
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQFC--------- 63 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~-gg~~~~~--~~~~-~~--~~~~~~~~--------- 63 (396)
|......+||+|||||.||++||..+++. |.+|+|+||.+.. ++..... .... +. .+.+..++
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 33333458999999999999999999986 6899999998753 2221100 0000 00 00000000
Q ss_pred ---------------------cCCCCCCCC------------CCC----CCCCHHHHHHHHHHHHHhcCCcceeeeceEE
Q 016069 64 ---------------------QLPHLPFPS------------SYP----MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSV 106 (396)
Q Consensus 64 ---------------------~~~~~~~~~------------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 106 (396)
.-.+.++.. ... ....+..+.+.|.+.+++.++++ +.++.+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v 160 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA 160 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence 000000000 000 01245577788888788777776 999999
Q ss_pred EEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 107 ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 107 ~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
+++..++++...-+...+... |.. ..+.++.||+|||..+.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~-g~~--~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 161 TRLLTDADGRVAGALGFDCRT-GEF--LVIRAKAVILCCGAAGR 201 (554)
T ss_pred EEEEEcCCCeEEEEEEEecCC-CcE--EEEECCEEEECCCCccc
Confidence 999765222222233222111 222 56899999999997543
No 201
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.57 E-value=1.8e-05 Score=74.04 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+|++|||+|++|+++|..|.++|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 202
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.57 E-value=8.1e-07 Score=85.85 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
+||+|||||.||+++|..+++.|.+|+|+|+....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999997643
No 203
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.57 E-value=1.2e-06 Score=84.26 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999976321 00 12355566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.+++. +.++.|++++.++ +.+.+.. ++ .++.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~-~g--------~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVT-ED--------ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEE-CC--------eEEEcCEEEEeeC--CCCCcc
Confidence 667777778776 8999999998643 4444443 22 6799999999999 677654
No 204
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=2e-06 Score=85.55 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=33.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
..+||+|||||.||++||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 35899999999999999999999999999999976433
No 205
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.55 E-value=1.9e-06 Score=85.90 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|.||++||..+++.|.+|+|+||....+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 57999999999999999999999999999999875443
No 206
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.55 E-value=2.2e-06 Score=85.39 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||||.||++||..+++.|.+|+|+||....++
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 57999999999999999999999999999999875444
No 207
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=1.7e-06 Score=83.86 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999976321 10 12456667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++.+ +.+++|++++.++ +.+.+.+.++ |+. .++.+|.||+|+| .+|+...
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~g---g~~--~~i~~D~vi~a~G--~~p~~~~ 276 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDG---GKE--ETLEADYVLVAVG--RRPNTEN 276 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeC---Cee--EEEEeCEEEEeeC--CccCCCC
Confidence 777777778766 9999999998764 4555665543 122 5689999999999 5666543
No 208
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=2.4e-06 Score=84.91 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
.+||+|||+|.||++||..+++.|.+|+|+|+....
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~ 47 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 579999999999999999999999999999997533
No 209
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.54 E-value=1.3e-06 Score=86.01 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
.+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 5899999999999999999999999999999987654
No 210
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=3e-06 Score=75.88 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=108.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
+.+++|||||..||..+.-..+.|.+||++|--+.+|+. -..++.+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 578999999999999999999999999999988866632 23477788
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~g~~~~~~~~ 166 (396)
++....+.++.. +.+++|++++.+.+ +...|...+..+ ++. .++++|.+++|+| .+|....+ |++......
T Consensus 258 ~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~-~k~--~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~ 328 (506)
T KOG1335|consen 258 FQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKT-GKK--ETLECDVLLVSIG--RRPFTEGL-GLEKIGIEL 328 (506)
T ss_pred HHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCC-Cce--eEEEeeEEEEEcc--CcccccCC-Chhhccccc
Confidence 888888888887 99999999998863 477787777655 343 7899999999999 77876554 344332122
Q ss_pred CCCcceeeccCCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhc
Q 016069 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHA 209 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~g 209 (396)
.+.+.+....++.. .-..|-.||.-..|--+|...-+.|
T Consensus 329 D~r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 329 DKRGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred ccccceeccccccc----cCCceEEecccCCcchhhhhhhhhc
Confidence 22333222221111 1235777886555555554444444
No 211
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.51 E-value=7.5e-06 Score=79.32 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12345566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++++ +.+++|..++.++ +.+.+.+.... +. .++.+|.||+|+| .+|+...
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~ViiA~G--~~p~~~~ 270 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPG--GQ---GEVEADELLVATG--RRPNTDG 270 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEEeEC--CCcCCCC
Confidence 777777778776 9999999998654 44555554310 11 6799999999999 6776653
No 212
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.51 E-value=2.4e-06 Score=82.62 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=75.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 3689999999999999999999999999999876321 10 12456667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|++++.+. ..+.+.. ++ +. .++.+|.||+|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g----~~--~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG----SI--QEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC----ce--EEEEeCEEEEecC--CccCCC
Confidence 777777778776 9999999997653 3433332 22 11 4789999999999 677654
No 213
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=2.7e-06 Score=83.87 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
|......+||+|||+|.||++||..+ +.|.+|+|+||.+.
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 44444568999999999999999999 88999999999763
No 214
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.51 E-value=1.1e-06 Score=83.42 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.+. .....+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 368999999999999999999999999999987632200 112355566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+.+..++.++++ +.++.|++++. + +.+.+.+.++ .++.+|.||+|+| ..|+.
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g--------~~i~aD~Vv~a~G--~~pn~ 243 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG--------ETLQADVVIYGIG--ISAND 243 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC--------CEEECCEEEECCC--CChhh
Confidence 777777778776 89999999875 2 4455666654 5799999999999 55653
No 215
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=3.2e-06 Score=84.58 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
.+||+|||||.||++||..+++.|.+|+|+|+....
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986544
No 216
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.50 E-value=1.4e-06 Score=83.38 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+||+|||||++|+++|.+|+++|.+|+|+|+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 489999999999999999999999999999975
No 217
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.50 E-value=1.9e-06 Score=83.46 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=77.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S--FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C--cCCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012456667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+.+++.++.+ +.++.|++++..+ +.+.+++.++ .++.+|.|++|+| .+|+..
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG--------KKIKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC--------CEEEeCEEEEeec--CCcccc
Confidence 777777778776 8999999998654 4556665543 5689999999999 566654
No 218
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.50 E-value=3.8e-07 Score=82.62 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=87.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh-----------HHHHHHhhcCC---hhhHHHHHHHHHH
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV-----------YLGLVLLRYVP---CGGVDTLMVMLSR 252 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~ 252 (396)
..++|||+|++|+-+|..+++.|.+|+++++.+ .+-..... .....+...+| .-+...|..+.+.
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~-k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP-KLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc-cccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 469999999999999999999999999999887 22221110 11222233333 2223333333233
Q ss_pred HHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC----eEEecCCcEEeCcEEEEC
Q 016069 253 LVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVFC 326 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~----~v~~~~g~~~~~D~vi~a 326 (396)
.+..-..++++.......-.+.....+...+-+.+..++++.+|+++++ |.+++.+ .+.+.+|+++.||.+|+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEe
Confidence 2222222333332222211111111223445556778889999999988 8888766 266678889999999999
Q ss_pred CCCC
Q 016069 327 TGFK 330 (396)
Q Consensus 327 tG~~ 330 (396)
||-.
T Consensus 163 tGG~ 166 (408)
T COG2081 163 TGGK 166 (408)
T ss_pred cCCc
Confidence 9944
No 219
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.50 E-value=3.1e-06 Score=82.33 Aligned_cols=134 Identities=18% Similarity=0.171 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc-c-cccCCc-------Cce-------------eec-------
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-I-WKKYSY-------DRL-------------RLH------- 57 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg-~-~~~~~~-------~~~-------------~~~------- 57 (396)
.+||+|||+|.||++||..+++.|. |+|+||.+..+| + |..... +.. ..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 999999865443 1 111000 000 000
Q ss_pred ---cccc--cccCCCCCCC--------------CCCC-----CCCCHHHHHHHHHHHHHh-cCCcceeeeceEEEEEEEc
Q 016069 58 ---LAKQ--FCQLPHLPFP--------------SSYP-----MFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYD 112 (396)
Q Consensus 58 ---~~~~--~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~v~~i~~~ 112 (396)
.+.. ++.-.+.++. ...+ ...+...+...|.+.+++ .++++ +.++.|+++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeecc
Confidence 0000 0000000000 0000 012456777888777776 56666 999999999765
Q ss_pred CCCCceE-EEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016069 113 EATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (396)
Q Consensus 113 ~~~~~~~-v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~ 150 (396)
+ +.+. +...+. +.. ..+.++.||+|||.++.
T Consensus 159 ~--g~v~Gv~~~~~---~~~--~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T--GRVVGVWVWNR---ETV--ETCHADAVVLATGGAGK 190 (488)
T ss_pred C--CEEEEEEEEEC---CcE--EEEEcCEEEECCCcccC
Confidence 3 3322 444432 111 57899999999998664
No 220
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.50 E-value=2.7e-06 Score=84.66 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~ 41 (396)
.+||+|||||.||++||..+++. |.+|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999998 999999999764
No 221
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=3e-06 Score=83.77 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
.+||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 5899999999999999999999999999999986444
No 222
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.48 E-value=2.5e-06 Score=82.56 Aligned_cols=63 Identities=14% Similarity=0.325 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcC-CcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 81 AQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
..+.+.+.+.+++.+ +.+ +++++|+++..++ ++.|.+.+.+..+ |+. .++++++||+|+|.++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~-G~~--~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKT-GEK--RTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCC-Cce--EEEEcCEEEECCCcch
Confidence 355566666666665 555 9999999998754 3458777654211 111 3689999999999876
No 223
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=4.7e-06 Score=82.74 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
++||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4799999999999999999999999999999877544
No 224
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=2.7e-06 Score=82.46 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 11 12455667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEe--ecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS--NLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|++++.+. +.+.+.+. ++ +. .++.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g----~~--~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG----KA--QELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC----Ce--EEEEeCEEEECcC--cccCCC
Confidence 777777778776 9999999997653 44545544 32 21 5799999999999 677654
No 225
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.47 E-value=3e-06 Score=78.53 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016069 79 SRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
....+.+.+.+.+.+. +..+ +++++|++|.... ++.|.|.+.+..+ |.. .++++++|++..|.++.+
T Consensus 179 nFG~LTr~l~~~l~~~~~~~~--~~~~eV~~i~r~~-dg~W~v~~~~~~~-~~~--~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQKGFEL--HLNHEVTDIKRNG-DGRWEVKVKDLKT-GEK--REVRAKFVFVGAGGGALP 246 (488)
T ss_pred cHHHHHHHHHHHHHhCCCcEE--EecCEeCeeEECC-CCCEEEEEEecCC-CCe--EEEECCEEEECCchHhHH
Confidence 3355666665555554 6555 9999999999876 5779999876544 333 789999999999986643
No 226
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.47 E-value=1.1e-06 Score=83.06 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
++||+|||||++|+++|+.|++.|.+|+++|+....
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 689999999999999999999999999999987643
No 227
>PTZ00367 squalene epoxidase; Provisional
Probab=98.47 E-value=1.6e-06 Score=84.97 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
..+||+|||||++|+++|..|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999865
No 228
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=2.6e-07 Score=89.62 Aligned_cols=54 Identities=26% Similarity=0.456 Sum_probs=46.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeecccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~ 60 (396)
.+|+||||||++||++|..|+++|++|+|+|+....||..+...+.+.+.+...
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~ 56 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGP 56 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCc
Confidence 589999999999999999999999999999999999997776656566555443
No 229
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=1.8e-06 Score=85.57 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~g 43 (396)
.+||+|||||.||++||..+++.+ .+|+|+||....+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 479999999999999999999874 7999999987544
No 230
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.45 E-value=2.2e-06 Score=79.03 Aligned_cols=43 Identities=33% Similarity=0.368 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 2 ~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
+.+....||||||+|.+||++|.+|.+.|++|+|+|.+++.||
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3344578999999999999999999999999999999998886
No 231
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=6.1e-07 Score=84.05 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=78.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecC----------CCCCcccccCCcCcee---------eccccccc---c
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE----------NCYASIWKKYSYDRLR---------LHLAKQFC---Q 64 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~----------~~~gg~~~~~~~~~~~---------~~~~~~~~---~ 64 (396)
.+||+|||||.||+.||...++.|.++.|+=-+ +.+||.-.....+.+- .+...-.+ .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 589999999999999999999999988887543 2444433322111110 00000000 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEE
Q 016069 65 LPHLPFPSSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (396)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vvi 143 (396)
...-|.-.......++..+..+++..++.. ++. .++..|+++...+.....-|.+.+| ..+.++.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEE
Confidence 011110001112234455666676666554 444 6777888887654222456788776 7899999999
Q ss_pred eecCC
Q 016069 144 ASGET 148 (396)
Q Consensus 144 AtG~~ 148 (396)
+||.+
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99965
No 232
>PRK06116 glutathione reductase; Validated
Probab=98.44 E-value=3.4e-06 Score=81.37 Aligned_cols=103 Identities=17% Similarity=0.081 Sum_probs=78.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------R--GFDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012355666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++++ +.+++|.+++.++ ++.+.+.+.++ .++.+|.||+|+| .+|+...
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g--------~~i~~D~Vv~a~G--~~p~~~~ 269 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG--------ETLTVDCLIWAIG--REPNTDG 269 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC--------cEEEeCEEEEeeC--CCcCCCC
Confidence 777777778776 9999999998754 23356766654 5789999999999 6676553
No 233
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.44 E-value=5.3e-06 Score=82.41 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=32.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999976543
No 234
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.42 E-value=4.1e-06 Score=80.68 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 10 12355666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+.+++.++.+ +.++.|.+++..+ +.+.+.+.++ .++.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~viva~G--~~pn~~ 266 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG--------EEIVADVVLFATG--RSPNTK 266 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------cEeecCEEEEeeC--CCcCCC
Confidence 666777778776 8999999998654 3455666543 6799999999999 566653
No 235
>PRK06370 mercuric reductase; Validated
Probab=98.42 E-value=5.2e-06 Score=80.39 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=76.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999877321 00 12355566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+.+++.++++ +.++.|.+++..+ +...+...... +. .++.+|.||+|+| .+|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNG--GA---PEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEECcC--CCcCCC
Confidence 777777778776 9999999998754 33444443210 11 5799999999999 677654
No 236
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.42 E-value=2.7e-06 Score=81.31 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|.||++||..+. .|.+|+|+||.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999985 6999999999876554
No 237
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.41 E-value=4.2e-06 Score=80.76 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIW 46 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~ 46 (396)
..+++|||||+|||++|..|.+. |.+|+|+|+.+..||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 47999999999999999999985 67999999999888854
No 238
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=6.5e-06 Score=79.71 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++|+.+++. +. ...++.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999876321 11 12345566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|.++...+ +.+.+......+ |+. ..+.+|.|++|+| ..|+..
T Consensus 221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~-g~~--~~i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAG-GAA--ETLQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCC-Cce--eEEEeCEEEEccC--Cccccc
Confidence 666777778776 9999999997653 344444432111 121 6799999999999 566654
No 239
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.40 E-value=3.8e-06 Score=83.25 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg 44 (396)
.+||+|||||.||++||..+++. +.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 479999999875544
No 240
>PRK12839 hypothetical protein; Provisional
Probab=98.40 E-value=1.5e-05 Score=78.77 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=38.0
Q ss_pred CCC-CCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 1 MKE-QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 1 M~~-~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
|++ ....+||+|||+|.+|+++|..++++|.+|+|+|+...+||
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 553 23468999999999999999999999999999999877665
No 241
>PLN02815 L-aspartate oxidase
Probab=98.40 E-value=5.3e-06 Score=82.08 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|.||+++|..+++.| +|+|+||....+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999876554
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.39 E-value=8.7e-07 Score=90.63 Aligned_cols=119 Identities=15% Similarity=0.284 Sum_probs=71.9
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCC---C-c-ccccCCcCceeecc-------cccccc-------CC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY---A-S-IWKKYSYDRLRLHL-------AKQFCQ-------LP 66 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~---g-g-~~~~~~~~~~~~~~-------~~~~~~-------~~ 66 (396)
++|+|||||++|+++|..|++. |++|+|+|+.+.. | | ....+....+.... ...+.. ..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 4899999999999999999998 8999999998752 2 1 11111000000000 000000 00
Q ss_pred CCCC-CCCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEe
Q 016069 67 HLPF-PSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVA 144 (396)
Q Consensus 67 ~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviA 144 (396)
.... ..... .-..+..+.+.|.+.+.+.++++ +++++|++++. ...++|.||.|
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~----------------------~~~~~D~VVgA 136 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA----------------------LAADADLVIAS 136 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh----------------------hhcCCCEEEEc
Confidence 0000 00000 12578899999999898888766 88888754421 22467999999
Q ss_pred ecCCCC
Q 016069 145 SGETSN 150 (396)
Q Consensus 145 tG~~s~ 150 (396)
+|..|.
T Consensus 137 DG~~S~ 142 (765)
T PRK08255 137 DGLNSR 142 (765)
T ss_pred CCCCHH
Confidence 997663
No 243
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=7.6e-06 Score=79.46 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=78.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999876321 10 12455666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++++ +.++.|++++.++ +...+...++. |++ ..+.+|.|++|+| ..|+...
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~--g~~--~~i~~D~vl~a~G--~~p~~~~ 288 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDAD--GEA--QTLEVDKLIVSIG--RVPNTDG 288 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCC--Cce--eEEEcCEEEEccC--CccCCCC
Confidence 666666777776 9999999998754 44455554421 222 5799999999999 6777553
No 244
>PLN02507 glutathione reductase
Probab=98.39 E-value=5.7e-06 Score=80.57 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+- +. ...++.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876211 10 22456667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|.+++..+ +...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG--------EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC--------cEEEcCEEEEeec--CCCCCC
Confidence 777777778776 9999999998654 4455665443 5799999999999 667654
No 245
>PRK14694 putative mercuric reductase; Provisional
Probab=98.38 E-value=5.4e-06 Score=80.35 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=74.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|++.|.+|+++++...+ + ....++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~--~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------S--QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------C--CCCHHHHHH
Confidence 368999999999999999999999999999864311 0 012355667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|.+++.++ +.+.+.+.+ .++.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA---------GTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC---------CEEEeCEEEEccC--CCCCcC
Confidence 777777778776 8999999998654 444454432 4699999999999 566654
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=98.38 E-value=5.4e-06 Score=79.79 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=73.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~--~~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------R--HLDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012334445
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+.. +.+++. +.+++|++++..+ +...+.+.++ .++.+|.|++|+| .+|+...
T Consensus 213 l~~l~-~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 213 FTELA-SKRWDV--RLGRNVVGVSQDG--SGVTLRLDDG--------STVEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHHH-hcCeEE--EeCCEEEEEEEcC--CEEEEEECCC--------cEeecCEEEEEEC--CccCccc
Confidence 54433 335444 8999999998654 4455666543 6799999999999 6776554
No 247
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=5.4e-06 Score=82.35 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC---CCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g---~~v~lie~~~~~gg 44 (396)
.+||+|||||.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 479999999999999999999998 89999999875543
No 248
>PRK14727 putative mercuric reductase; Provisional
Probab=98.37 E-value=5.8e-06 Score=80.32 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=74.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHH
Confidence 368999999999999999999999999999874311 0 123456667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++.+ +.++.|..++.++ +.+.+.+.+ .++.+|.||+|+| ..|+..
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~---------g~i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH---------GELRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC---------CeEEeCEEEEccC--CCCCcc
Confidence 777777778776 8899999998654 455555433 4588999999999 566554
No 249
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.37 E-value=6.4e-06 Score=79.75 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=77.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (396)
.+++|||+|..|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHHH
Confidence 589999999999999999999999999999876321 11 123456667
Q ss_pred HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
....++.++++ +.++++.+++.++ +.+.+.+.++ .++.+|.|++|+| .+|+..
T Consensus 225 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 225 EEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG--------RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC--------cEEEecEEEEeec--CCcCCC
Confidence 77777778776 8899999997654 4455666544 5789999999999 667654
No 250
>PRK07208 hypothetical protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=85.54 Aligned_cols=47 Identities=32% Similarity=0.530 Sum_probs=41.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR 53 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~ 53 (396)
++||+|||||++||++|+.|.++|++|+|+|+.+++||.+......+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g 50 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG 50 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence 57999999999999999999999999999999999999766543333
No 251
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.37 E-value=6e-06 Score=81.72 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~gg 44 (396)
.+||+|||||.||++||..+++. |.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999875554
No 252
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=9e-06 Score=81.30 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
.+||+|||+|.||++||..+++.|.+|+|+|+....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999986543
No 253
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.37 E-value=7.5e-06 Score=81.29 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=35.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|++|+++|..++++|.+|+|+||....||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 68999999999999999999999999999999887665
No 254
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.36 E-value=8.3e-06 Score=78.54 Aligned_cols=103 Identities=16% Similarity=0.033 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 11 12345666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++.. +.++.|.++..+. .+...+.+.++ . ..+.+|.|++|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g----~---~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG----K---SIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC----c---EEEEcCEEEEeeC--CCcCcc
Confidence 666677778776 9999999998653 23345665543 1 4689999999999 677654
No 255
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=7e-06 Score=79.03 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHH
Confidence 3589999999999999999999999999999876321 11 12455666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+.+++.++++ +.++.|.+++.++ +.+.+.+.+ .++.+|.|++|+| .+|+..
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~---------g~i~~D~vl~a~G--~~pn~~ 257 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH---------AQLAVDALLIASG--RQPATA 257 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC---------CeEEeCEEEEeec--CCcCCC
Confidence 777777788776 8999999998754 445555433 4588999999999 566653
No 256
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=1.6e-05 Score=78.90 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||+|||+|.+|+++|..++++|.+|+|+|+....||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 368999999999999999999999999999999887665
No 257
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=1.4e-05 Score=79.49 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
.+||+|||||.||++||..+++. .+|+|+||....+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 57999999999999999999976 8999999976444
No 258
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.35 E-value=5.4e-06 Score=79.97 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=74.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHH
Confidence 3689999999999999999999999999999876321 00 013567777
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+.+.+++.++++ +.+++|.+++.++ +.+.+.+.+ .++.+|.||+|+| ..|+.
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~d~vi~a~G--~~p~~ 248 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK---------GEYEADVVIVATG--VKPNT 248 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC---------CEEEcCEEEECcC--CCcCH
Confidence 887888888776 8999999996432 333344432 5699999999999 55553
No 259
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.34 E-value=2e-05 Score=77.90 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=38.2
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
|......+||+|||+|++|+++|..++++|.+|+|||+.+..||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 44445579999999999999999999999999999999876654
No 260
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=79.87 Aligned_cols=35 Identities=43% Similarity=0.526 Sum_probs=31.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
.+|+|||||++|+++|..|.++|++|+|+|+...+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 58999999999999999999999999999976533
No 261
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.34 E-value=1.8e-05 Score=77.44 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=37.7
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
|......+||||||+| +|+++|.++++.|.+|+|+|+.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5666567999999999 999999999999999999999876553
No 262
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=8.1e-07 Score=85.40 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=37.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
.++|||||||++||+||++|...|++|+|+|.++++||.
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 579999999999999999999999999999999999983
No 263
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.32 E-value=1.8e-06 Score=79.97 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhc--CceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHA--AKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGI 263 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g--~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (396)
.++++|+|+|..|+.++..|.+.- .+|++++|++.+.++....+.+... ++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~---l~------------------------ 55 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGT---LS------------------------ 55 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCC---CC------------------------
Confidence 579999999999999999999975 8899999999655444332211110 00
Q ss_pred CCCCCCcchhhhccCCccccCchhhhhhc-CCCeEEccC-ceeEECC--eEEecCCcEEeCcEEEECCCCCCCcc
Q 016069 264 HKPREGPFFMKAAYGKYPVIDAGTCEKIK-SGQIQVLPG-IESIRGN--EVIFENGHSHHFDSIVFCTGFKRSTN 334 (396)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~ 334 (396)
.......+.+.++ ..+++++.+ |+.|+.+ .|++.++..+++|.+|+++|..+++.
T Consensus 56 ----------------~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 56 ----------------ESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred ----------------hhheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcC
Confidence 0111122345555 345999888 9999766 59999988999999999999999883
No 264
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.32 E-value=7.4e-06 Score=78.54 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. + ....++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHH
Confidence 36899999999999999999999999999998763210 0 012455667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+.+.+++.|+++ +.++.|.+++.+. . . +...++ .++.+|.||+|+| ..|+.
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~--~-~-v~~~~g--------~~i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE--R-V-KVFTSG--------GVYQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC--C-E-EEEcCC--------CEEEeCEEEECCC--ccCCH
Confidence 777777788776 8999999997543 2 2 344443 5799999999999 55654
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.31 E-value=9.1e-06 Score=78.31 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=72.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 00 11234444
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..+ .++.+ +.++.|.+++.++ +.+.+.+.++ .++.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~i--~~~~~V~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWDI--RLGRNVTAVEQDG--DGVTLTLDDG--------STVTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------CEEEcCEEEEeec--cCcCCC
Confidence 544333 35554 8999999998654 4455665543 5799999999999 677654
No 266
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.31 E-value=1.9e-05 Score=79.22 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
.+||+|||||.||+.||..+++.|.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 5899999999999999999999999999999876443
No 267
>PRK13748 putative mercuric reductase; Provisional
Probab=98.31 E-value=8.1e-06 Score=81.14 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+|+++...+ +. ...++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHH
Confidence 368999999999999999999999999999975311 00 12356667
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++.+ +.++.|.+++.++ +.+.+.+.+ .++.+|.|++|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH---------GELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC---------CeEEeCEEEEccC--CCcCCC
Confidence 777777778776 8899999997654 455555433 4689999999999 677654
No 268
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.30 E-value=3.1e-05 Score=76.94 Aligned_cols=39 Identities=18% Similarity=0.574 Sum_probs=35.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||+|||+|.+|+++|..++++|.+|+|||+.+..||
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 368999999999999999999999999999999876665
No 269
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=1.4e-05 Score=77.38 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+++. +. ...++.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999887321 11 12345555
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++. +.+ +.++.|+.++..+ +...+...++. ++. .++.+|.||+|+| .+|+..
T Consensus 221 ~~~~l~~~-v~i--~~~~~v~~i~~~~--~~~~v~~~~~~--~~~--~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNI--MLETKVTAVEAKE--DGIYVTMEGKK--APA--EPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEE--EcCCEEEEEEEcC--CEEEEEEEeCC--Ccc--eEEEeCEEEEeec--ccccCC
Confidence 55555544 444 8899999998654 44556554431 111 5799999999999 677664
No 270
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.29 E-value=1.7e-05 Score=79.02 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=30.5
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 10 vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
|+|||+|.||++||..+++.|.+|+|+||....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998733
No 271
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.29 E-value=6.5e-06 Score=84.62 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+|++..+.+- +. .-..+..+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~~-~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------AE-QLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------hh-hcCHHHHHH
Confidence 3589999999999999999999999999999876321 00 012355567
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+.+..++.++++ +.++.+.++..+.......+.+.++ .++.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG--------~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG--------SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC--------CEEEcCEEEECCC--cccCc
Confidence 777778888777 9999999997543223344666655 6799999999999 56664
No 272
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.29 E-value=6.6e-06 Score=79.01 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.. ....++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHH
Confidence 36899999999999999999999999999998763220 012355666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.|.+++. . .+++.++ ..+.+|.|++|+| .+|+..
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g--------~~~~~D~vl~a~G--~~pn~~ 244 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG--------KVEHYDMIIEGVG--THPNSK 244 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC--------CEEEeCEEEECcC--CCcChH
Confidence 777777778776 89999998863 2 2666554 5689999999999 566543
No 273
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.29 E-value=1.5e-05 Score=77.34 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=75.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++.. +. + ....++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------R--GFDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------c--ccCHHHHHH
Confidence 3579999999999999999999999999998742 10 1 112456677
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.+..+...+ +...++..++.. . .++.+|.|++|+| ..|+..
T Consensus 226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~--~---~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN--G---IEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc--c---eEEEeCEEEEEec--CCcCCC
Confidence 777777778776 8899888887654 344455544311 1 4799999999999 667654
No 274
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=1.3e-05 Score=77.76 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=75.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------------------------P--LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--chhHHHHHH
Confidence 4689999999999999999999999999999876322 0 012355666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++. +++ +.++.+.+++.++. ..+.++..++.. .++.+|.|++|+| ..|+...
T Consensus 216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~~~------~~i~~D~vi~a~G--~~p~~~~ 272 (460)
T PRK06292 216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGGKT------ETIEADYVLVATG--RRPNTDG 272 (460)
T ss_pred HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCCce------EEEEeCEEEEccC--CccCCCC
Confidence 66666655 555 89999999976542 233343323321 6799999999999 6777653
No 275
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.29 E-value=1.9e-05 Score=77.79 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||+|||+|.||+++|..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 358999999999999999999886 89999999876554
No 276
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.28 E-value=1.3e-05 Score=78.18 Aligned_cols=100 Identities=18% Similarity=0.028 Sum_probs=74.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+++++...+ + ....++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~--~~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------R--GFDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------c--cCCHHHHHH
Confidence 358999999999999999999999999999864210 1 012345566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.+..+...+ +...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG--------TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC--------CEEEcCEEEEeeC--CCCCcc
Confidence 777777778776 8899888887654 3445665544 5689999999999 667654
No 277
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=4.4e-05 Score=75.32 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=35.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||||||+| +|+++|..+++.|.+|+|+||.+.+||
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 36899999999 899999999999999999999887776
No 278
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1e-05 Score=79.69 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=32.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|.||++||..+. .|.+|+|+||.+..||
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 589999999999999999996 4999999999876554
No 279
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.24 E-value=1.9e-05 Score=84.35 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||||||+|.||++||..+++.|.+|+|+||.+..||
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 58999999999999999999999999999999887776
No 280
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.6e-05 Score=77.65 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||+|||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999875444
No 281
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.23 E-value=4.9e-05 Score=75.12 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=35.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
..+||+|||+|.+|+++|..+++.|.+|+|+|+....||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999876665
No 282
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.23 E-value=1.9e-05 Score=76.61 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=75.0
Q ss_pred CCeEEEECCChHHHHHHHHHHh---cCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~---~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
..+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ...++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHH
Confidence 4689999999999999976654 489999999876321 11 12466
Q ss_pred HHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
.+.+.+..++.++.+ +.++.|.++...+ ++...+.+.++ .++.+|.|++|+| ..|+..
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g--------~~i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG--------KTLDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC--------CEEEcCEEEEeeC--CCcCcc
Confidence 677777777778776 9999999998653 23344555443 5799999999999 667654
No 283
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.23 E-value=4.6e-06 Score=75.88 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=66.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc---eeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV---HVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
+++|||+|++|+++|..|.+.|.+|+++++.+. +..... +.. +|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~-------~~~-~~------------------------- 48 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTE-------VEN-YP------------------------- 48 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeeccc-------ccc-cC-------------------------
Confidence 589999999999999999999999999997751 000000 000 00
Q ss_pred CCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECC----eEEecCCcEEeCcEEEECCCCCCCcc
Q 016069 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRSTN 334 (396)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~ 334 (396)
...... ....+...+.+.+++.+++++.. ++.++.+ .+.++++.++++|.+|+|||..|+.+
T Consensus 49 --~~~~~~------~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 49 --GFPEGI------SGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred --CCCCCC------ChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 000000 00011122334455566777666 7676654 35666778999999999999988653
No 284
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.22 E-value=1.7e-06 Score=83.70 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=39.4
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCcccccCCcCc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDR 53 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~ 53 (396)
++|+|||||++||+||+.|.+.| .+|+|+|+.+++||..+.....+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g 48 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG 48 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC
Confidence 47999999999999999999987 89999999999999665443333
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.22 E-value=1.5e-05 Score=76.01 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=78.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (396)
.+++|||+|+.|+.+|..|+++|.+|+++|+.+..++.. .. .++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHHH
Confidence 689999999999999999999999999999998655220 01 6777888
Q ss_pred HHHHHhcCCcceeeeceEEEEEEEcCCCCceE-EEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
.+..++.+++. +.+..+..++...+..... +...++ ..+.+|.+++++| .+|+
T Consensus 185 ~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 185 AELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG--------EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC--------cEEEeeEEEEeec--cccc
Confidence 88888888666 8999999998765211111 233333 6799999999999 5664
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.22 E-value=9.4e-06 Score=83.34 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .-.......
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------------------------~~-~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------------------------AK-QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------------------------hh-hcCHHHHHH
Confidence 3589999999999999999999999999999876321 00 012344566
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.|+++ +.++.++++..+. ....|.+.++ .++.+|.||+|+| .+|+..
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG--------~~i~~D~Vi~a~G--~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG--------SSLEADLIVMAAG--IRPNDE 241 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC--------CEEEcCEEEECCC--CCcCcH
Confidence 666777788777 8999998886543 3344666665 6799999999999 566543
No 287
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.21 E-value=2e-06 Score=76.08 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc
Q 016069 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (396)
Q Consensus 2 ~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 46 (396)
..+..+.+|+|||+|++||+||+.|.++ .+|+|+|...++||..
T Consensus 3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha 46 (447)
T COG2907 3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcc
Confidence 3444578999999999999999999875 6999999999888743
No 288
>PTZ00058 glutathione reductase; Provisional
Probab=98.19 E-value=2.6e-05 Score=76.62 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. -..++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK--FDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc--CCHHHHHH
Confidence 4689999999999999999999999999999876321 11 12455666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.++++ +.+..|.+++..+ .+.+.+...++ . .++.+|.|++|+| ..|+...
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~-~~~v~v~~~~~----~---~~i~aD~VlvA~G--r~Pn~~~ 340 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVK-EKNLTIYLSDG----R---KYEHFDYVIYCVG--RSPNTED 340 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecC-CCcEEEEECCC----C---EEEECCEEEECcC--CCCCccc
Confidence 666677778776 9999999998653 22344443332 1 5799999999999 5676543
No 289
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.19 E-value=3.2e-06 Score=79.31 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred eEEEEcCCCCHHHHHHHHHhh---cCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcC
Q 016069 188 NVLVVGSGNSGMEIALDLANH---AAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~---g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
+|+|||+|..|+.+|..+.+. +.+|+++++++.......... .+....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~---~~~g~~~------------------------- 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPG---MIAGHYS------------------------- 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhH---HHheeCC-------------------------
Confidence 589999999999999999643 568999998884332211100 0000000
Q ss_pred CCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECC--eEEecCCcEEeCcEEEECCCCCCCccc
Q 016069 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN--EVIFENGHSHHFDSIVFCTGFKRSTNV 335 (396)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~~ 335 (396)
.........+.+++.+++++.+ ++.++.+ .|.+++|+++++|.+|+|||.+++.+.
T Consensus 53 ---------------~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 53 ---------------LDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ---------------HHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC
Confidence 0000011234455568888877 8888754 588889999999999999999987643
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.18 E-value=5.2e-06 Score=79.39 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
..++|+|||+|..|+.+|..|.....+|+++.+++......... ..+....+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~---~~~~g~~~~------------------------ 61 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLP---QTTTGTLEF------------------------ 61 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHH---HhcccCCCh------------------------
Confidence 36799999999999999999876667899999888433211110 000000000
Q ss_pred CCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECC--eEEe----------cCCcEEeCcEEEECCCCCC
Q 016069 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN--EVIF----------ENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~--~v~~----------~~g~~~~~D~vi~atG~~~ 331 (396)
......+...++..+++++.+ |+.++.+ .|.+ .+|.++++|.+|+|||..+
T Consensus 62 ----------------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 62 ----------------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred ----------------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence 000001223345556777777 8888754 4666 4677899999999999998
Q ss_pred Ccc
Q 016069 332 STN 334 (396)
Q Consensus 332 ~~~ 334 (396)
+..
T Consensus 126 ~~~ 128 (424)
T PTZ00318 126 NTF 128 (424)
T ss_pred CCC
Confidence 763
No 291
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.18 E-value=7.3e-05 Score=74.29 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=35.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
.+||+|||+|.+|+++|..++++|.+|+|+|+....||.
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 589999999999999999999999999999998877763
No 292
>PLN02576 protoporphyrinogen oxidase
Probab=98.16 E-value=3.7e-06 Score=82.27 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCCCcccc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYASIWK 47 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~-g~~v~lie~~~~~gg~~~ 47 (396)
.++||+|||||++||++|+.|.+. |.+|+|+|+.+++||...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 357999999999999999999999 999999999999998544
No 293
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.14 E-value=3.5e-06 Score=81.71 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=38.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKK 48 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~~~ 48 (396)
++||+|||||++||++|+.|.++ |.+|+|+|+++++||..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 46999999999999999999998 9999999999999996543
No 294
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.14 E-value=2.4e-05 Score=70.34 Aligned_cols=136 Identities=22% Similarity=0.200 Sum_probs=76.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC-----CCCcccccCC--------------------cCceeeccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-----CYASIWKKYS--------------------YDRLRLHLAKQ 61 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~-----~~gg~~~~~~--------------------~~~~~~~~~~~ 61 (396)
..||+|||||.+|.+.|..|++.|-+|.+|||.- .+|....... ..+..+.....
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk 124 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGK 124 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCc
Confidence 5799999999999999999999999999999853 1121111110 01111111111
Q ss_pred cc--cCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEE
Q 016069 62 FC--QLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (396)
Q Consensus 62 ~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 137 (396)
.. .++..+++..... -.+...+.+.+++.+... +++ ..+..|.++-.++ +-.--|++.+.++ ++ .+..
T Consensus 125 ~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~---~eeGtV~sLlee~-gvvkGV~yk~k~g--ee--~~~~ 196 (509)
T KOG1298|consen 125 EVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR---LEEGTVKSLLEEE-GVVKGVTYKNKEG--EE--VEAF 196 (509)
T ss_pred eeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE---EeeeeHHHHHhcc-CeEEeEEEecCCC--ce--EEEe
Confidence 11 1111112111111 123456667777666554 433 5667777665443 1122255555433 22 6678
Q ss_pred eCEEEEeecCCCC
Q 016069 138 GRFLVVASGETSN 150 (396)
Q Consensus 138 ~d~vviAtG~~s~ 150 (396)
|..-|+|+|.+|+
T Consensus 197 ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 197 APLTVVCDGCFSN 209 (509)
T ss_pred cceEEEecchhHH
Confidence 8899999999874
No 295
>PLN02676 polyamine oxidase
Probab=98.14 E-value=4.4e-06 Score=80.99 Aligned_cols=49 Identities=35% Similarity=0.462 Sum_probs=41.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCcccccCCcCce
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRL 54 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~ 54 (396)
..+||+|||||++||++|+.|.++|. +|+|+|+++++||.+....+.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~ 74 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGV 74 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCe
Confidence 36899999999999999999999998 69999999999997665444443
No 296
>PLN02268 probable polyamine oxidase
Probab=98.13 E-value=3.4e-06 Score=81.11 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=36.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
.+|+|||||++||+||+.|.+.|++|+|+|+++++||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 3799999999999999999999999999999999998443
No 297
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.13 E-value=3.5e-06 Score=79.30 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=42.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcC--CCeEEEecCCCCCcccccCCcCceeec
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLH 57 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~ 57 (396)
++|+|||||++||++|+.|.+++ .+++|+|++++.||..+.....+..++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e 52 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFE 52 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEe
Confidence 47999999999999999999998 899999999999998775544444444
No 298
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.13 E-value=4.3e-06 Score=81.68 Aligned_cols=50 Identities=22% Similarity=0.348 Sum_probs=41.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeec
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH 57 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~ 57 (396)
+||+|||||++||++|..|++.|++|+|+|+++..||.......++...+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD 51 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEe
Confidence 58999999999999999999999999999999999985544333444443
No 299
>PRK10262 thioredoxin reductase; Provisional
Probab=98.11 E-value=4.6e-05 Score=70.10 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 3689999999999999999999999999999875210 11233455
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.++++ +.++.++++..++ .+.-.|++.++...++. .++.+|.||+|+| ..|+..
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~--~~i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNI--ESLDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCCeE--EEEECCEEEEEeC--CccChh
Confidence 555556666665 8899999997543 12223454443211122 5799999999999 566544
No 300
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.10 E-value=5.4e-05 Score=75.12 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHH----hcCCCeEEEecCCC
Q 016069 9 EVIIVGAGPSGLATAACLS----LQSIPYVILERENC 41 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~----~~g~~v~lie~~~~ 41 (396)
||+|||||.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 301
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.09 E-value=6.3e-05 Score=75.12 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. + ....++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~--~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------P--LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------c--cCCHHHHHH
Confidence 3589999999999999999999999999999987422 1 012345566
Q ss_pred HHHHH-HhcCCcceeeeceEEEEEEEcCCCCceEEEEeecC---CCC------ceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL---SPG------RVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~---~~g------~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.... ++.++++ +.++.|.+++..+....+.+...+.. ..+ +. .++.+|.|++|+| .+|+...
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDI--KETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccc--eEEEcCEEEEEEC--cccCCcc
Confidence 65543 4567666 99999999986542223445443211 000 00 3699999999999 6777654
No 302
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.08 E-value=1.4e-05 Score=75.02 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
+|+|||||.+|+.+|..|+++|++|+|+|+.+..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 79999999999999999999999999999876543
No 303
>PRK07233 hypothetical protein; Provisional
Probab=98.07 E-value=4.2e-06 Score=80.41 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=36.4
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
+|+|||||++||++|+.|.+.|++|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 589999999999999999999999999999999999543
No 304
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=4.6e-06 Score=78.35 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=35.9
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
++|+|+|||.|||+||+.|+++|++|+|+|.++..||
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4899999999999999999999999999999999998
No 305
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.07 E-value=4.5e-05 Score=74.64 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=30.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
.+||+|||+|.||++||..++ +.+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 589999999999999999997 569999999875
No 306
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.05 E-value=4e-05 Score=67.81 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc----CCCeEEEecCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPYVILEREN 40 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~~ 40 (396)
.++||+|||||-.|.+.|.-|.++ |++|+++|+.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 478999999999999999988763 78999999976
No 307
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.05 E-value=5.7e-06 Score=81.07 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=35.4
Q ss_pred EEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 10 vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
|||||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999998543
No 308
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.05 E-value=5.2e-05 Score=74.19 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=35.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCC
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~g 43 (396)
...+||+|||||.||+.||..++..|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 346899999999999999999999999999999977444
No 309
>PLN02546 glutathione reductase
Probab=98.04 E-value=8e-05 Score=73.24 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=74.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+++|||||+.|+.+|..|.+.+.+|+|+++.+.+. + ....++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~--~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------R--GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 023455666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.+..++.|+++ +.++.+.++.... ++...+.+.++ ....+|.|++|+| .+|+..
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g--------~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG--------TVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe--------EEEecCEEEEeec--cccCCC
Confidence 777777778776 8999999997643 24434443321 3345899999999 566654
No 310
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.04 E-value=7.1e-06 Score=80.14 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=37.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
+||+|||||.+|+++|..|+++|++|+|+|+++..||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 5899999999999999999999999999999999888443
No 311
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.02 E-value=5.5e-05 Score=72.64 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCce-EEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
...+.+.|.+.+++.++++ ++++.|+++..+++++.+ .+...++ . ..+.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~----~---~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG----T---HRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC----c---EEEEcCEEEEcCCCcc
Confidence 4567778888888888776 999999999765212322 1233221 1 5789999999999654
No 312
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.02 E-value=6.8e-06 Score=76.34 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=36.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 46 (396)
+|++|||||++|+++|..|++.|.+|+|+|+++.+||..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 699999999999999999999999999999999999843
No 313
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=7.6e-06 Score=71.78 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=37.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
++|++|||||.+|+.+|..|+++|.+|.|+|+++++||-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccc
Confidence 37999999999999999999999999999999999998543
No 314
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.00 E-value=0.00019 Score=75.03 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
.+||+|||||.||+++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999998764
No 315
>PLN02568 polyamine oxidase
Probab=97.99 E-value=1.1e-05 Score=79.03 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-----CCeEEEecCCCCCccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS-----IPYVILERENCYASIWKK 48 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g-----~~v~lie~~~~~gg~~~~ 48 (396)
..||+|||||++||++|..|.+.| ++|+|+|++.++||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 479999999999999999999887 899999999999996553
No 316
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.99 E-value=4.2e-06 Score=78.73 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=69.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhh-------------HHHHHHhhc--CChhhHHHHHHHHHH
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV-------------YLGLVLLRY--VPCGGVDTLMVMLSR 252 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~ 252 (396)
+|+|||+|++|+-+|..+++.|.+|.+++|++ .+...... +.......+ .+..+...+..+...
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 58999999999999999999999999999997 33222111 111111111 111122222222111
Q ss_pred HHhccccccCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE--CCe---EEecCCcEEeCcEEEE
Q 016069 253 LVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE---VIFENGHSHHFDSIVF 325 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~--~~~---v~~~~g~~~~~D~vi~ 325 (396)
....-..+.++.......-.......+...+-+.+.+.+++.+++++.+ |..+. .++ |.++++..+.+|.||+
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 1111111222221111000000011123344455667778889999988 88884 343 6666888999999999
Q ss_pred CCCCCCC
Q 016069 326 CTGFKRS 332 (396)
Q Consensus 326 atG~~~~ 332 (396)
|||-..-
T Consensus 161 AtGG~S~ 167 (409)
T PF03486_consen 161 ATGGKSY 167 (409)
T ss_dssp ----SSS
T ss_pred ecCCCCc
Confidence 9998753
No 317
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.99 E-value=6.6e-05 Score=69.64 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=82.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
...|+++|+|+.|+.+|..|...+.+|++|++.+..- + -.-...+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~-~lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------P-RLFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------h-hhhhHHHHHH
Confidence 4579999999999999999999999999999987210 0 0233456666
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~~ 157 (396)
.+.+.++.++.. ..++.+.+++-++....-.|.+.++ .++.+|.||+.+| .+|+.+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC--------CEeccCeEEEeec--ccccccccc
Confidence 677777778776 8999999998776434445667766 7899999999999 678777654
No 318
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.96 E-value=1.1e-05 Score=78.26 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=36.3
Q ss_pred CeEEEECCChHHHHHHHHHHhc------CCCeEEEecCCCCCccccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASIWKK 48 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~------g~~v~lie~~~~~gg~~~~ 48 (396)
++|+|||||++||++|+.|.+. +.+|+|+|+++++||..+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999986 3799999999999996543
No 319
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.94 E-value=1.4e-05 Score=73.88 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=36.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCcccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWK 47 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~ 47 (396)
..+|+|||||.||++||.+|.++|. +++|+|..+++||..+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 4689999999999999999997765 8999999999998543
No 320
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=5.2e-05 Score=70.05 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=29.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEec
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILER 38 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~ 38 (396)
..|||||||||.||..+|.+.++.|.+.+|+-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 368999999999999999999999998888764
No 321
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.89 E-value=0.00013 Score=64.19 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=33.3
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
.+||||+|.|||+++..+...+-.|+|+|+...+||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 699999999999999999988777999999998887
No 322
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.83 E-value=2.1e-05 Score=76.04 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=34.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
+|+|||||++|+++|+.|.++|++|+|+|+.+.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999988884
No 323
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.80 E-value=0.00016 Score=63.78 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.-.++|||+|++|+-+|..|++.|.+|.+++|++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4579999999999999999999999999999987
No 324
>PLN02529 lysine-specific histone demethylase 1
Probab=97.80 E-value=3.1e-05 Score=77.77 Aligned_cols=41 Identities=39% Similarity=0.335 Sum_probs=37.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
.++|+|||||++|+++|..|.+.|++|+|+|+.+++||...
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 57999999999999999999999999999999998888543
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.80 E-value=0.00027 Score=69.42 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=69.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+|+|||||+.|+.+|..|++.+.+|+++++.+.+. .. ..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~~----~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------AD----KV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------hh----HH
Confidence 3689999999999999999999999999999765210 11 12
Q ss_pred HHHHHHh-cCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+...+++ .++.+ +.++.++++..++ +....|.+.++.+ |+. .++.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~-~~~--~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNS-GEE--KQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCC-CcE--EEEEcCEEEEEeC--CcCCch
Confidence 3333333 46665 8999999887543 1222255554322 222 5799999999999 566654
No 326
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.80 E-value=3.7e-05 Score=80.00 Aligned_cols=101 Identities=25% Similarity=0.201 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+. .|...++++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~----------------------------------~GG~l~yGIP 350 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD----------------------------------LGGVLRYGIP 350 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC----------------------------------CCceEEccCC
Confidence 489999999999999999999999999999998761 1122223322
Q ss_pred CCCCCcchhhhccCCccccCchhhhhhcCCCeEEccCceeEECCeEEecCCcEEeCcEEEECCCCC-CC
Q 016069 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFK-RS 332 (396)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~-~~ 332 (396)
.-+... .+-+...+.+++.+++++.++. .+..+.+++.....+|.|++|||.. |.
T Consensus 351 ~~rlp~-----------~vi~~~i~~l~~~Gv~f~~n~~--vG~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 351 EFRLPN-----------QLIDDVVEKIKLLGGRFVKNFV--VGKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred CCcChH-----------HHHHHHHHHHHhhcCeEEEeEE--eccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 111110 0111224566777888877621 1223556666667899999999995 43
No 327
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.78 E-value=2.8e-05 Score=72.83 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=35.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
.+||+|||||..|..+|.-..-+|+++.|+|+.+...|+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 489999999999999999999999999999998855443
No 328
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.76 E-value=1.5e-05 Score=73.70 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=68.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCCh-hhHHHHHH---HHHHHHhccccccCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPC-GGVDTLMV---MLSRLVYGDLSKYGI 263 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~ 263 (396)
.|+|||+|..|+|+|..+++.|.+|.++........-... +........ .++..+.. ...........++.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C----npsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC----NPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS----SSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc----hhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 4899999999999999999999999999422211100000 000000000 01111100 000011111111122
Q ss_pred CCCCCCcchhhh-ccCCccccCchhhhhhcC-CCeEEccC-ceeEECC-----eEEecCCcEEeCcEEEECCCC
Q 016069 264 HKPREGPFFMKA-AYGKYPVIDAGTCEKIKS-GQIQVLPG-IESIRGN-----EVIFENGHSHHFDSIVFCTGF 329 (396)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~i~v~~~-v~~~~~~-----~v~~~~g~~~~~D~vi~atG~ 329 (396)
-....++.-... ...-...+...+.+.+++ .++++... |+.+..+ +|.+.+|+.+.+|.||+|||.
T Consensus 77 lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp ESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 111111111100 000122334444555555 78999877 8887432 589999999999999999999
No 329
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.75 E-value=0.00028 Score=65.25 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
..+.+.+.+++++.|.++ +++++|+++...+ +....+.+.++ .++.+|+||+|.|.
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g--------~~i~~~~vvlA~Gr 228 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG--------EEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC--------cEEecCEEEEccCc
Confidence 466777888888888777 9999999999875 22345677765 68999999999997
No 330
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.74 E-value=3.5e-05 Score=73.43 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=39.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 48 (396)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 589999999999999999999999999999999999997764
No 331
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.72 E-value=4.4e-05 Score=71.35 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~ 42 (396)
.||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 69999999999999999999999999999976543
No 332
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00021 Score=68.78 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
+...+-+.+...+...|..+ ..++.|+++.... ++.+-|.|.. ..+++.++|-|+|.|.
T Consensus 185 DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~---------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPH---------GSIETECVVNAAGVWA 243 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccC---------cceecceEEechhHHH
Confidence 33444456666678888777 9999999997754 3556677776 5789999999999865
No 333
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.70 E-value=0.00034 Score=61.49 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA 43 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~g 43 (396)
.++|+||||||+.|++.|++|.-. +.+|.++|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 469999999999999999999876 78999999876443
No 334
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.69 E-value=0.00028 Score=62.41 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=97.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhH-HHHHHHHHHHHhccccccCcC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGV-DTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (396)
...++|||+|++|+-+|..|++.|.+|.++++.+..- .. .+.... .++...+ .....++. ++++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G-gg--~~~gg~---~~~~~~v~~~~~~~l~--------~~gv~ 90 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG-GG--MWGGGM---LFNKIVVQEEADEILD--------EFGIR 90 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC-Cc--cccCcc---ccccccchHHHHHHHH--------HCCCC
Confidence 4579999999999999999999999999999886310 00 000000 0111000 00011111 12221
Q ss_pred CCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEE--CC----eEEec-----------CCcEEeCcEEEE
Q 016069 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN----EVIFE-----------NGHSHHFDSIVF 325 (396)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~--~~----~v~~~-----------~g~~~~~D~vi~ 325 (396)
......-. .......+...+.+...+.+++++.+ +..+. ++ ++... +...+.++.||.
T Consensus 91 ~~~~~~g~---~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 91 YKEVEDGL---YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred ceeecCcc---eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 11110000 00011223333455556678888776 55542 22 22221 224789999999
Q ss_pred CCCCCCCcccccccCCC----CCCCC------CC-CcCCCCCCCccCCCceEEEeccccccc----------CchHHHHH
Q 016069 326 CTGFKRSTNVWLKQGDD----SMLND------DG-IPKQSYPNHWKGKNGLYCVGLSRKGLY----------GAAADAQN 384 (396)
Q Consensus 326 atG~~~~~~~~~~~~~~----~~~~~------~g-~~~~~~~~~~~~~~~vya~Gd~~~~~~----------~a~~~a~~ 384 (396)
|||........+..... ....+ .+ ..+++ ....-.||+|++|-+++.+. .-...++.
T Consensus 168 ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~ 245 (257)
T PRK04176 168 ATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKK 245 (257)
T ss_pred EeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHH
Confidence 99987655333220000 00111 11 11111 11123699999998865422 33457888
Q ss_pred HHHHHhhhcC
Q 016069 385 IADHINSILS 394 (396)
Q Consensus 385 ~a~~i~~~l~ 394 (396)
+|+.|.++|+
T Consensus 246 ~a~~~~~~~~ 255 (257)
T PRK04176 246 VAELILEKLK 255 (257)
T ss_pred HHHHHHHHhh
Confidence 8888888775
No 335
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.66 E-value=6.4e-05 Score=72.29 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHh--hcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~--~g~~v~~~~r~~ 219 (396)
.+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 37899999999999999999987 689999999998
No 336
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.65 E-value=0.00055 Score=63.19 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=66.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC--CeEEEecCCCCCcccccCCcCce--eeccccccccCCCCCC----------C-
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPF----------P- 71 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~--~v~lie~~~~~gg~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~- 71 (396)
.++|+|||||-++..++..|.+.+. +|+++-++...-- ..+..+ .+..|...-.|...+. .
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~----~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~ 265 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP----MDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRH 265 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGG
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC----CccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHh
Confidence 5789999999999999999999865 7999998763210 000000 0011110000000000 0
Q ss_pred CCCCCCCCHHHH---HHHH--HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016069 72 SSYPMFVSRAQF---IEYL--DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (396)
Q Consensus 72 ~~~~~~~~~~~~---~~~l--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG 146 (396)
.... -++.+.+ .+.+ +.+..+. ...++.+++|+++...+ ++.|.+++.+..+ ++. .++.+|.||+|||
T Consensus 266 ~ny~-~i~~~~l~~iy~~lY~~~v~g~~--~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~-~~~--~~~~~D~VilATG 338 (341)
T PF13434_consen 266 TNYG-GIDPDLLEAIYDRLYEQRVSGRG--RLRLLPNTEVTSAEQDG-DGGVRLTLRHRQT-GEE--ETLEVDAVILATG 338 (341)
T ss_dssp GTSS-EB-HHHHHHHHHHHHHHHHHT-----SEEETTEEEEEEEEES--SSEEEEEEETTT---E--EEEEESEEEE---
T ss_pred hcCC-CCCHHHHHHHHHHHHHHHhcCCC--CeEEeCCCEEEEEEECC-CCEEEEEEEECCC-CCe--EEEecCEEEEcCC
Confidence 0000 0122222 2211 1222222 34558899999999886 3589999988654 333 7899999999999
No 337
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.64 E-value=6e-05 Score=73.02 Aligned_cols=37 Identities=35% Similarity=0.342 Sum_probs=34.9
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
+|+|||||++|+++|..|.+.|++|+|+|+.+..||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999988874
No 338
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.64 E-value=7.6e-05 Score=75.54 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=37.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~ 46 (396)
..+|+|||||++|+++|+.|.+.|++|+|+|+.+++||..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 5789999999999999999999999999999999888853
No 339
>PRK06847 hypothetical protein; Provisional
Probab=97.62 E-value=0.00013 Score=68.75 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCCh-hhHHHHHHHHHHHHhccccccCcC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPC-GGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
..+|+|||+|.+|+-+|..|.+.|.+|+++++.+..........+.....+.+.. .+.+.+.... . ......+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~--~---~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAG--F---GFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhC--C---CccceEEE
Confidence 5689999999999999999999999999999887321100000000000000000 0111111100 0 00000000
Q ss_pred CCCCCcc------------hhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC----eEEecCCcEEeCcEEEEC
Q 016069 265 KPREGPF------------FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVFC 326 (396)
Q Consensus 265 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~----~v~~~~g~~~~~D~vi~a 326 (396)
.+.-... +.....-..+.+...+.+.+.+.+++++.+ +++++.+ .+.+++|+++.+|.||.|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A 158 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence 0000000 000000011233344455555667888776 7777543 366778999999999999
Q ss_pred CCCCCCcc
Q 016069 327 TGFKRSTN 334 (396)
Q Consensus 327 tG~~~~~~ 334 (396)
+|......
T Consensus 159 dG~~s~~r 166 (375)
T PRK06847 159 DGLYSKVR 166 (375)
T ss_pred cCCCcchh
Confidence 99876553
No 340
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=0.00044 Score=64.51 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCC-eEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIP-YVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~-v~lie~~~ 40 (396)
.+++|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999988987 99999764
No 341
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.60 E-value=0.00016 Score=74.69 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 47899999999999999999999999999999876
No 342
>PRK06834 hypothetical protein; Provisional
Probab=97.59 E-value=0.00016 Score=70.37 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceee--ehhhhHHHHHHhhcCCh-hhHHHHHHHHHHHHhccc--cc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVL--SREMVYLGLVLLRYVPC-GGVDTLMVMLSRLVYGDL--SK 260 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~--p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~ 260 (396)
...|+|||+|++|+-+|..|++.|.+|+++++.+.... ++.. .+.....+.+.. .+.+.+............ ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~-~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAG-GLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCccee-eECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 35799999999999999999999999999999874221 1110 011111111100 111221110000000000 00
Q ss_pred cCcCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC--ceeEECC--e--EEecCCcEEeCcEEEECCCCCCCc
Q 016069 261 YGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENGHSHHFDSIVFCTGFKRST 333 (396)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~ 333 (396)
+..........+ ......+.+...+.+.+++.+++++.+ ++.++.+ + +.+.+|+++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~~~~--~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 82 LDISDFPTRHNY--GLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccccCCCCCCc--cccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000000000 000011233344455566678888877 7777543 3 555678889999999999987655
No 343
>PLN02487 zeta-carotene desaturase
Probab=97.59 E-value=8.6e-05 Score=72.94 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
.++|+|||||++|+++|..|.+.|++|+|+|+.+..||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35999999999999999999999999999999999988543
No 344
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.59 E-value=0.0011 Score=65.12 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=68.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+|+|||||..|+.+|..|+..+.+|+++++.+.+. .. ..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----QV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----HH
Confidence 3689999999999999999999999999999876210 00 12
Q ss_pred HHHHHHh-cCCcceeeeceEEEEEEEcCCCCce-EEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 87 l~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+.....+ .++.+ +.++.++++..++ +.. .+...+..+ |++ .++.+|.+++|+| ..|+..
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~--g~v~~v~~~~~~~-g~~--~~i~~D~v~~~~G--~~p~~~ 452 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG--DKVTGLTYKDRTT-GEE--HHLELEGVFVQIG--LVPNTE 452 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC--CcEEEEEEEECCC-CcE--EEEEcCEEEEeEC--CccCch
Confidence 3333332 46655 9999999997653 322 244444322 232 5799999999999 556543
No 345
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.58 E-value=2.5e-05 Score=66.56 Aligned_cols=32 Identities=38% Similarity=0.735 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+++|||+|+.|+.+|..|++.+.+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996665
No 346
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.58 E-value=6.6e-05 Score=68.20 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHhcC-CCeEEEecCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENC 41 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~~ 41 (396)
||+||||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999986 69999999873
No 347
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.58 E-value=8e-05 Score=63.52 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=24.6
Q ss_pred EEEcCCCCHHHHHHHHHhhcCc-eEEEEecC
Q 016069 190 LVVGSGNSGMEIALDLANHAAK-TSLVIRSP 219 (396)
Q Consensus 190 ~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~ 219 (396)
+|||+|++|+-+|..|.+.|.+ +++++|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999998 99999886
No 348
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=9e-05 Score=73.28 Aligned_cols=38 Identities=37% Similarity=0.534 Sum_probs=35.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~--~~gg 44 (396)
.+||+|||+|.+|++||..+++.|.+|+|+|+.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 5899999999999999999999999999999988 5555
No 349
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.57 E-value=0.00051 Score=66.23 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=66.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
..+|+|||||..|+-+|..|.+.|.+|+++++.... . .......
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~------------------------------~---~~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE------------------------------D---MTARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------c---CCCCHHH---
Confidence 368999999999999999999999999999987520 0 0011111
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCce-EEEEe---------ecC-----CCCceeeEEEEeCEEEEeecCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKAS---------NLL-----SPGRVIEEYYSGRFLVVASGETSNP 151 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~v~~~---------~~~-----~~g~~~~~~~~~d~vviAtG~~s~p 151 (396)
.+.+++.|+.+ ++++.++++..++ ++.. .|.+. ++. -.|++ .++.+|.||+|+| ..|
T Consensus 316 -~~~l~~~GV~~--~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~--~~i~~D~Vi~AiG--~~p 387 (449)
T TIGR01316 316 -IAHAEEEGVKF--HFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE--CKLEADAVIVAIG--NGS 387 (449)
T ss_pred -HHHHHhCCCEE--EeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCce--EEEECCEEEECCC--CCC
Confidence 12345567776 8888888876433 2322 23332 110 00222 5799999999999 556
Q ss_pred CC
Q 016069 152 FT 153 (396)
Q Consensus 152 ~~ 153 (396)
+.
T Consensus 388 ~~ 389 (449)
T TIGR01316 388 NP 389 (449)
T ss_pred Cc
Confidence 54
No 350
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.57 E-value=8.8e-05 Score=72.14 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=37.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
+||+|||+|++|+.+|+.|++.|++|++||++...|+.|-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999998888774
No 351
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.56 E-value=0.0016 Score=57.84 Aligned_cols=38 Identities=37% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC--CCCc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYAS 44 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~--~~gg 44 (396)
.+|++|||+|.+|+-+|.+|+..|.+|+++|... .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 5899999999999999999999999999999754 4555
No 352
>PLN02463 lycopene beta cyclase
Probab=97.54 E-value=0.00031 Score=67.21 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=72.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKP 266 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
-.++|||+|++|+-+|..|++.|.+|.++++++....|..-......+.. + .+.+.+. ..+......+ +
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~-l--gl~~~l~----~~w~~~~v~~----~ 97 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEA-L--GLLDCLD----TTWPGAVVYI----D 97 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHH-C--CcHHHHH----hhCCCcEEEE----e
Confidence 47999999999999999999999999999987633222210000001100 0 0001010 0010000000 0
Q ss_pred CCCcchhhhccC--CccccCchhhhhhcCCCeEEccC-ceeEECC----eEEecCCcEEeCcEEEECCCCCCC
Q 016069 267 REGPFFMKAAYG--KYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRS 332 (396)
Q Consensus 267 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 332 (396)
............ ....+...+.+.+.+.+++++.. |++++.+ .|.+++|.++++|.||.|+|....
T Consensus 98 ~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 98 DGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000000000000 11223334455556668888755 7777543 377789999999999999998764
No 353
>PLN02612 phytoene desaturase
Probab=97.51 E-value=0.00014 Score=72.01 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=36.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~ 45 (396)
.++|+|||||++|+++|..|.++|++++++|+.+..||.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 578999999999999999999999999999998888873
No 354
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.50 E-value=0.00025 Score=69.42 Aligned_cols=33 Identities=42% Similarity=0.553 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.|+|||+|..|+++|..+++.|.+|.++++++
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 369999999999999999999999999999874
No 355
>PLN02661 Putative thiazole synthesis
Probab=97.48 E-value=0.0013 Score=60.05 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=33.9
Q ss_pred CCCCCCCCCeEEEEcCCCCHHHHHHHHHhh-cCceEEEEecC
Q 016069 179 KNGKPYGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVIRSP 219 (396)
Q Consensus 179 ~~~~~~~~~~i~VvG~G~~g~e~a~~l~~~-g~~v~~~~r~~ 219 (396)
.+..+...-.++|||+|.+|+-+|..|++. |.+|++++++.
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 334444466899999999999999999976 78999999876
No 356
>PLN03000 amine oxidase
Probab=97.46 E-value=0.00017 Score=73.17 Aligned_cols=42 Identities=33% Similarity=0.307 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccc
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~ 47 (396)
...+|+|||||++|+++|..|.+.|++|+|+|+.+++||.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence 357999999999999999999999999999999999998554
No 357
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.43 E-value=0.00031 Score=64.35 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=72.9
Q ss_pred CeEEEECCChHHHHHHHHHHhc--------------CCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~--------------g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (396)
.+++||||||.|+.+|.+|+.. .++|+++|..+.+=
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL------------------------------ 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL------------------------------ 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH------------------------------
Confidence 5899999999999999999752 45899999877321
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 74 YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+ .-...+.+|.++...+.++++ +.++.|..+... . +....++ |+. .++.|-.||-|||...+|..
T Consensus 269 -~--mFdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~----~--I~~~~~~--g~~--~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 269 -N--MFDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEK----T--IHAKTKD--GEI--EEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred -H--HHHHHHHHHHHHHhhhcccee--ecccEEEeecCc----E--EEEEcCC--Cce--eeecceEEEecCCCCCchhh
Confidence 0 123466677777777777776 888888888643 3 4443332 344 78999999999996555544
Q ss_pred C
Q 016069 154 P 154 (396)
Q Consensus 154 ~ 154 (396)
-
T Consensus 334 k 334 (491)
T KOG2495|consen 334 K 334 (491)
T ss_pred h
Confidence 3
No 358
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.42 E-value=0.002 Score=60.78 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=33.7
Q ss_pred CeEEEECCChHHHHHHHHHHhc----CCCeEEEecCCCCCccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIW 46 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~~~~gg~~ 46 (396)
.+.=|||+|+|+|++|..|-+. |-+|+++|+.+..||..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 5788999999999999999985 55999999988777644
No 359
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.38 E-value=0.00025 Score=64.96 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=36.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCC--eEEEecCCCCCccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIP--YVILERENCYASIWKK 48 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~--v~lie~~~~~gg~~~~ 48 (396)
.++|+|+|||++||++|+.|++.+.+ |+|+|..++.||-.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 57999999999999999999998764 6679999999984443
No 360
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.38 E-value=0.00027 Score=67.31 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHH-hhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~-~~g~~v~~~~r~~ 219 (396)
.+++|+|||+|++|+.+|..|+ ..|.+|+++.+.|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4789999999999999999765 5689999999998
No 361
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.36 E-value=0.00039 Score=72.23 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 6799999999999999999999999999999876
No 362
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00025 Score=62.69 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
++||+|||||.||++|+.+|.++|.+++||..+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999999764
No 363
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.0028 Score=61.38 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
..+|+|||||..|+-+|..|.+.|.+|+++.+..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999765
No 364
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.35 E-value=0.00046 Score=64.66 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=67.3
Q ss_pred EEEEcCCCCHHHHHHHHHhh--cCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCC
Q 016069 189 VLVVGSGNSGMEIALDLANH--AAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKP 266 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~--g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
++|||+|.+|+.+|..|++. |.+|.++++.+. ..+ ...+ + +......+.....+..........+.+..+
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~-~~~-~~tw-~-----~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~ 73 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT-IGG-NHTW-S-----FFDSDLSDAQHAWLADLVQTDWPGYEVRFP 73 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC-CCC-cccc-e-----ecccccchhhhhhhhhhheEeCCCCEEECc
Confidence 79999999999999999987 889999998761 111 1000 0 000000000000011111111111111111
Q ss_pred CCCcchhhhcc-CCccccCchhhhhhcCCCeEEccCceeEECCeEEecCCcEEeCcEEEECCCCCC
Q 016069 267 REGPFFMKAAY-GKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~ 331 (396)
.....+..... -....+.+.+.+.+.. ++.....|.+++.+++.+++|+++.+|.||.|.|..+
T Consensus 74 ~~~~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 74 KYRRKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred chhhhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 11000000000 0011122222333333 2433122888888889999999999999999999665
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.35 E-value=0.00027 Score=72.61 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 36799999999999999999999999999999764
No 366
>PLN02976 amine oxidase
Probab=97.35 E-value=0.00024 Score=75.00 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=39.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~ 49 (396)
.++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.|...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4799999999999999999999999999999999999976643
No 367
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.33 E-value=0.0034 Score=57.46 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=29.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeEEEecC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERE 39 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~----g~~v~lie~~ 39 (396)
.+||+|+|||+.|++.|..|... .+++.|+|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999999863 5599999977
No 368
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.31 E-value=0.0028 Score=51.48 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.1
Q ss_pred EEEcCCCCHHHHHHHHHhhc-----CceEEEEecC
Q 016069 190 LVVGSGNSGMEIALDLANHA-----AKTSLVIRSP 219 (396)
Q Consensus 190 ~VvG~G~~g~e~a~~l~~~g-----~~v~~~~r~~ 219 (396)
+|||+|++|+-++..|.+.. .+|+++++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999883 4699999866
No 369
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.28 E-value=0.0011 Score=63.75 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..++|+|||+|++|+-+|..|.+.|.+|+++++++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 36899999999999999999999999999999876
No 370
>PRK05868 hypothetical protein; Validated
Probab=97.28 E-value=0.00085 Score=63.06 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
++|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 5799999999999999999999999999999874
No 371
>PRK02106 choline dehydrogenase; Validated
Probab=97.27 E-value=0.00032 Score=69.68 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCeEEEECCChHHHHHHHHHHh-cCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSL-QSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~-~g~~v~lie~~~ 40 (396)
.+|+||||||++|+.+|.+|++ .|.+|+|+|+++
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5899999999999999999999 799999999985
No 372
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.26 E-value=0.0029 Score=62.74 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
..+++|||||+.|+.+|..|.+.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 3689999999999999999999999999999876
No 373
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00053 Score=60.65 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~ 41 (396)
...|.|||||.||..+|+++++.|++|.|+|.++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 35799999999999999999999999999998763
No 374
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.25 E-value=0.0019 Score=62.47 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=65.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..+|+|||+|..|+-+|..|.+.|. +|+++++..... ++....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~---------------------------------~~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE---------------------------------MPASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc---------------------------------CCCCHH---
Confidence 4689999999999999999999988 899999864200 001111
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCC-CceEEEEe-------ecC----CCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKAS-------NLL----SPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~v~~~-------~~~----~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
..+.+++.|+++ ++++.+..+..++.. ....+... ++. .+|+. .++.+|.||+|+| ..|+
T Consensus 317 -~~~~~~~~GV~i--~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~--~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 -EVEHAKEEGVEF--EWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSE--FTLPADLVIKAIG--QTPN 388 (457)
T ss_pred -HHHHHHHCCCEE--EecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCce--EEEECCEEEECcc--CCCC
Confidence 123345667776 888888888754311 11222211 000 00222 6799999999999 5665
No 375
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.0039 Score=59.32 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.++++|||+|++|+-.|..|.+.|.+++++.|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 6899999999999999999999999999999988
No 376
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.23 E-value=0.00063 Score=64.49 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999986
No 377
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.22 E-value=0.00049 Score=72.45 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5799999999999999999999999999999876
No 378
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.20 E-value=0.00033 Score=66.19 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehh-hhHHHHHHhhcCChhhH-HHHHHHHH----HHHhc--c
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYVPCGGV-DTLMVMLS----RLVYG--D 257 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~--~ 257 (396)
...|+|||+|.+|+-+|..|++.|.+|+++++.+....+.. ...+.....+.+..-.. +.+..... ..... .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 35799999999999999999999999999999842222221 01111111111111111 11111000 00000 0
Q ss_pred --ccccCcCCCCCCcchhhhccCCccccCchhhhhhcC-CCeEEccC--ceeEECCe----EEec-CCcEEeCcEEEECC
Q 016069 258 --LSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGNE----VIFE-NGHSHHFDSIVFCT 327 (396)
Q Consensus 258 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~~~--v~~~~~~~----v~~~-~g~~~~~D~vi~at 327 (396)
...+........... ..-....+...+.+.+.+ .+|+++.+ |+.++.+. +.++ ||+++++|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 RRLLIFDAAELGRGALG---YVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred ceeEEecccccCCCcce---EEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 000000000000000 000122333444555544 55899887 88876553 7778 99999999999999
Q ss_pred CCCC
Q 016069 328 GFKR 331 (396)
Q Consensus 328 G~~~ 331 (396)
|...
T Consensus 159 G~~S 162 (387)
T COG0654 159 GANS 162 (387)
T ss_pred CCch
Confidence 9653
No 379
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.19 E-value=0.0008 Score=63.26 Aligned_cols=133 Identities=19% Similarity=0.225 Sum_probs=74.0
Q ss_pred EEEEcCCCCHHHHHHHH--HhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCC
Q 016069 189 VLVVGSGNSGMEIALDL--ANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKP 266 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l--~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
++|||+|++|+-+|..| +..|.+|.++++.+....+.... +...... +.. +............+..+
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~t-W~~~~~~-~~~---------~~~~v~~~w~~~~v~~~ 70 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRT-WCFWEKD-LGP---------LDSLVSHRWSGWRVYFP 70 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcc-ccccccc-ccc---------hHHHHheecCceEEEeC
Confidence 79999999999999999 77788999999887432222211 1111000 000 01111111112222222
Q ss_pred CCCcchhhhcc--CCccccCchhhhhhcCCCeEEccC-ceeEECCe----EEecCCcEEeCcEEEECCCCCCC
Q 016069 267 REGPFFMKAAY--GKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE----VIFENGHSHHFDSIVFCTGFKRS 332 (396)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 332 (396)
..........+ -....+.+.+.+.+...++..... |++++.++ +++++|+++.++.||-|+|..+.
T Consensus 71 ~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 71 DGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 22221111000 012233444455555556655555 88887664 58889999999999999997654
No 380
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.002 Score=53.98 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 183 ~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
++....++|||+|++|+-+|..|++.|.+|.++.|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 3445679999999999999999999999999999876
No 381
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.18 E-value=0.00065 Score=64.48 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
+.+|+|||+|.+|+-+|..|++.|.+|++++|.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 56899999999999999999999999999999873
No 382
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.00052 Score=64.96 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=72.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhH-HHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY-LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHK 265 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (396)
-.|+|||+|..|+|.|.+.++.|.++.+++-+....-...+.. +.......+- .-++.+--..........-++.+-.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lv-rEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLV-REIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeE-EeehhccchHHHhhhhcCCchhhcc
Confidence 3699999999999999999999999988876653322111110 0000000000 0011111111222222222333323
Q ss_pred CCCCcchhhhccCCc-cccCchhhhhh-cCCCeEEccC-ceeEE---C---CeEEecCCcEEeCcEEEECCCCCC
Q 016069 266 PREGPFFMKAAYGKY-PVIDAGTCEKI-KSGQIQVLPG-IESIR---G---NEVIFENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~v~~~-v~~~~---~---~~v~~~~g~~~~~D~vi~atG~~~ 331 (396)
...+|.......-.. -.+.....+.+ ...++.++.+ |+.+. . .+|++.+|..+.++.||++||---
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 333332211110000 01111122233 3367888777 44431 1 268999999999999999998643
No 383
>PRK09126 hypothetical protein; Provisional
Probab=97.17 E-value=0.00077 Score=63.88 Aligned_cols=34 Identities=35% Similarity=0.678 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
-.|+|||+|++|+-+|..|++.|.+|++++|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4699999999999999999999999999999874
No 384
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00044 Score=67.98 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 2 ~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+....++|+||||+|.+|..+|.+|+..+.+|+|+|+..
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 344557999999999999999999999899999999884
No 385
>PRK07236 hypothetical protein; Provisional
Probab=97.14 E-value=0.0015 Score=61.78 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5789999999999999999999999999999987
No 386
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.13 E-value=0.0014 Score=64.18 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.++|||+|..|+++|..+++.|.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999999999999999999999999999875
No 387
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0025 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCc-eEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~ 219 (396)
..+++|||+|.+|+-++..|.++|.. +.+++++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 46799999999999999999999988 99999886
No 388
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.12 E-value=0.0017 Score=59.30 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=71.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhc----CCCeE-EEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYV-ILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA 81 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~----g~~v~-lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
...|.|||.|+-|..+|..|.++ |.+|. +|+.+..++ -+-.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------------------------kiLPe 393 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------------------------KILPE 393 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------------------------hhhHH
Confidence 36899999999999999999874 33332 333332111 11223
Q ss_pred HHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
.+.++-.+.+++.|+.+ +-+..|.++..+. +...+.+.+| .+++.|.||+|+| ..|+..
T Consensus 394 yls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG--------~~l~tD~vVvavG--~ePN~e 452 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG--------SELRTDLVVVAVG--EEPNSE 452 (659)
T ss_pred HHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC--------CeeeeeeEEEEec--CCCchh
Confidence 34455556677778887 9999999998876 6667888887 7899999999999 667643
No 389
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.11 E-value=0.001 Score=64.92 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++++|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999999999999999998765
No 390
>PRK08244 hypothetical protein; Provisional
Probab=97.11 E-value=0.00098 Score=65.22 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4699999999999999999999999999999874
No 391
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.10 E-value=0.0017 Score=61.42 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=68.8
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCC
Q 016069 189 VLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPRE 268 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (396)
++|||+|++|+-+|..|++.|.+|+++++++...-+.. ..... ..++....+ ......+.+ . +....+..
T Consensus 2 viIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~-~~~~~---~~~~~~~~~---~~~~~~~~~-~--~~~~~~~~ 71 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHT-YGVWD---DDLSDLGLA---DCVEHVWPD-V--YEYRFPKQ 71 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCcc-ccccH---hhhhhhchh---hHHhhcCCC-c--eEEecCCc
Confidence 79999999999999999999999999998874221110 00000 000000000 000000100 0 00000100
Q ss_pred Ccchhhhcc-CCccccCchhhhhhcCCCeEEccC-ceeEECC-----eEEecCCcEEeCcEEEECCCCCC
Q 016069 269 GPFFMKAAY-GKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN-----EVIFENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 269 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~ 331 (396)
......... -....+...+.+.+.+.+++++.. +..++.+ .|.+.+|+++.+|.||.|+|..+
T Consensus 72 ~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 72 PRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred chhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 000000000 011223344455555567787766 6666533 25666888999999999999765
No 392
>PRK06184 hypothetical protein; Provisional
Probab=97.10 E-value=0.0015 Score=63.99 Aligned_cols=35 Identities=31% Similarity=0.662 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
...|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35799999999999999999999999999999873
No 393
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.07 E-value=0.0071 Score=52.77 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcC------CCeEEEecCCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQS------IPYVILERENCYA 43 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g------~~v~lie~~~~~g 43 (396)
..++|+|+|||+.|..+|+.|.+++ +.|+|||.+...|
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 3579999999999999999999986 6899999876444
No 394
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.06 E-value=0.0017 Score=61.91 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 369999999999999999999999999999886
No 395
>PRK09897 hypothetical protein; Provisional
Probab=97.06 E-value=0.0063 Score=59.48 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcC--ceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~--~v~~~~r~~ 219 (396)
++|+|||+|++|+-++..|.+.+. +|+++++++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 589999999999999999998754 799999865
No 396
>PRK06753 hypothetical protein; Provisional
Probab=97.03 E-value=0.0015 Score=61.47 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 699999999999999999999999999999984
No 397
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.02 E-value=0.0015 Score=67.15 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+++|+|||+|+.|+.+|..|+..|.+|+++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 358999999999999999999999999999999764
No 398
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.02 E-value=0.033 Score=56.42 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~ 40 (396)
..+|+|||||..|+.+|..+.+.|. +|+++.+..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999987 599998765
No 399
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.02 E-value=0.001 Score=67.04 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++++|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 37899999999999999999999999999999887
No 400
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.99 E-value=0.0017 Score=61.58 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=28.5
Q ss_pred EEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 190 LVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 190 ~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+|||+|++|+-+|..+++.|.+|+++++++
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999999999999887
No 401
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0012 Score=67.28 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCc
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGI 263 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (396)
..+++|+|||+|++|+-+|..|.+.|..|+++.|+.. .|.+.+|++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr----------------------------------~ggll~ygi 1828 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR----------------------------------VGGLLMYGI 1828 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC----------------------------------cCceeeecC
Confidence 3589999999999999999999999999999999982 233334444
Q ss_pred CCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccCceeEECCeEEecCCcEEeCcEEEECCCCCCC
Q 016069 264 HKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFKRS 332 (396)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~ 332 (396)
..-.... .+-+...+.+.+.+|+++++. +|..+ +..|+-.-+.|.||+|+|.+..
T Consensus 1829 pnmkldk-----------~vv~rrv~ll~~egi~f~tn~-eigk~--vs~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1829 PNMKLDK-----------FVVQRRVDLLEQEGIRFVTNT-EIGKH--VSLDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred CccchhH-----------HHHHHHHHHHHhhCceEEeec-ccccc--ccHHHHhhccCeEEEEeCCCCC
Confidence 3222211 122233466777888887661 11111 2234445578999999999853
No 402
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.97 E-value=0.0058 Score=64.76 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=65.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.. ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 3689999999999999999999996 58889876411 11
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
.+.+.+++.++++ +.++.|+.+..++ ..-.|+..... |+. .++.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~--g~~--~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNG--GAG--QRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecC--Cce--EEEECCEEEEcCC--cCchh
Confidence 1233456667766 8899998886542 21123333110 111 6799999999999 56654
No 403
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.93 E-value=0.0012 Score=59.75 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999987
No 404
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.93 E-value=0.0012 Score=64.24 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++++|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36899999999999999999999999999999876
No 405
>PRK07190 hypothetical protein; Provisional
Probab=96.92 E-value=0.0028 Score=61.72 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..|+|||+|++|+-+|..|++.|.+|.++++.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 4699999999999999999999999999999873
No 406
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.92 E-value=0.00017 Score=59.58 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=40.3
Q ss_pred CeEEEECCChHHHHHHHHHHhc--CCCeEEEecCCCCC-cccccCC-cCceeecccccc
Q 016069 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA-SIWKKYS-YDRLRLHLAKQF 62 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~--g~~v~lie~~~~~g-g~~~~~~-~~~~~~~~~~~~ 62 (396)
.||+|||+|.+||++|+...++ +++|.+||.+-..| |.|.... +..+.+..|..+
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhL 135 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHL 135 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHH
Confidence 5999999999999999999976 56899999876554 5776543 333444444443
No 407
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.89 E-value=0.0043 Score=58.66 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
-.|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4699999999999999999999999999999874
No 408
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0012 Score=61.29 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.|+|||+|..|+|.|.+.++.|++.+++..+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 479999999999999999999999988887554
No 409
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.88 E-value=0.067 Score=51.93 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~ 40 (396)
..+++|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3689999999999999999999985 799999865
No 410
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.88 E-value=0.0017 Score=61.35 Aligned_cols=33 Identities=33% Similarity=0.655 Sum_probs=30.9
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
.|+|||+|++|+-+|..|++.|.+|++++|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 389999999999999999999999999999983
No 411
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.86 E-value=0.012 Score=57.18 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=63.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCC-CeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
..+|+|||+|..|+-+|..+.+.|. +|++++........+ +. ....+.+.. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~----~~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NK----NNPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cc----ccCCcccch-----H
Confidence 4689999999999999999888886 688776544211000 00 000011111 0
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceE-EEEe-----ec---CCCCceeeEEEEeCEEEEeecCCCCCC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKAS-----NL---LSPGRVIEEYYSGRFLVVASGETSNPF 152 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-v~~~-----~~---~~~g~~~~~~~~~d~vviAtG~~s~p~ 152 (396)
.....+.+.|+.. ++++.++++...+ +..+ |... ++ ..+|++ .++.+|.||+|+| ..|+
T Consensus 334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~--~~i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSE--FVLPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCce--EEEECCEEEECcC--cCCC
Confidence 1123344557666 8888888886422 3321 2221 11 001232 6799999999999 5554
No 412
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.85 E-value=0.002 Score=60.87 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 369999999999999999999999999999875
No 413
>PRK07588 hypothetical protein; Provisional
Probab=96.85 E-value=0.0018 Score=61.38 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=31.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 699999999999999999999999999998873
No 414
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.85 E-value=0.0028 Score=60.58 Aligned_cols=33 Identities=30% Similarity=0.631 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcC-ceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~ 220 (396)
+|+|||+|..|+-+|..|.+.|. +|++++|++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 69999999999999999999984 9999999873
No 415
>PRK07045 putative monooxygenase; Reviewed
Probab=96.85 E-value=0.003 Score=59.77 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
-+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999984
No 416
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.79 E-value=0.002 Score=59.96 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.++|||+|..|+-+|..|++.|.+|+++++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999883
No 417
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.79 E-value=0.004 Score=59.67 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.|+|||+|++|+-+|..|++.|.+|.+++|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 469999999999999999999999999999886
No 418
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.78 E-value=0.0022 Score=60.97 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=37.3
Q ss_pred cCchhhhhhcCCCeEEccC--ceeEECC--e--EEecCCcEEeCcEEEECCCCCCCc
Q 016069 283 IDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENGHSHHFDSIVFCTGFKRST 333 (396)
Q Consensus 283 ~~~~~~~~~~~~~i~v~~~--v~~~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~ 333 (396)
+...+.+.+.+.+++++.+ ++.++.+ . +.+++|+.+.+|+||.|.|.....
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHH
Confidence 3444555666678888877 7777543 2 666788899999999999986544
No 419
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.76 E-value=0.0028 Score=60.09 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999876
No 420
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0064 Score=59.31 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
..+++|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999764
No 421
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.70 E-value=0.028 Score=57.03 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHhcCC-CeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~-~v~lie~~~ 40 (396)
.+|+|||||..|+-+|..+.++|. +|+++.+..
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 589999999999999999999986 699998765
No 422
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.69 E-value=0.0031 Score=53.67 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+.+++++|||||.+|..-+..|.+.|++|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 458899999999999999999999999999997554
No 423
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.66 E-value=0.0016 Score=64.28 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHhcC-CCeEEEecCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQS-IPYVILEREN 40 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g-~~v~lie~~~ 40 (396)
|+||||||.+|+.+|.+|++.+ .+|+|+|+++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999987 6999999875
No 424
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.59 E-value=0.0071 Score=52.01 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=26.7
Q ss_pred EEEEcCCCCHHHHHHHHHhh--cCceEEEEecC
Q 016069 189 VLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 219 (396)
.+|||||-.|+-+|..|+.+ .++|.++.-++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999987 45788887776
No 425
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.57 E-value=0.023 Score=52.92 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
....+.+.|...+++.++.+ +++++|++++ + +.|.+.+..+ . ..+++|.||+|||..+.|..
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i~--~--~~~~v~~~~~----~---~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGWQ--G--GTLRFETPDG----Q---STIEADAVVLALGGASWSQL 145 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEEe--C--CcEEEEECCC----c---eEEecCEEEEcCCCcccccc
Confidence 56788899999999988887 9999999992 2 4588877532 1 46899999999997665544
No 426
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.56 E-value=0.0014 Score=62.72 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=26.2
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 189 VLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
|+|||+|..|+-.|..+++.|.+|.|+++.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 8999999999999999999999999999888
No 427
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.55 E-value=0.014 Score=56.22 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
.-.|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 45799999999999999999999999999998863
No 428
>PRK08013 oxidoreductase; Provisional
Probab=96.55 E-value=0.0049 Score=58.59 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999884
No 429
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.52 E-value=0.0051 Score=58.05 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=30.0
Q ss_pred EEEEcCCCCHHHHHHHHHhhc-CceEEEEecC
Q 016069 189 VLVVGSGNSGMEIALDLANHA-AKTSLVIRSP 219 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 219 (396)
|+|||+|++|+-+|..|++.| .+|++++|.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 899999999999999999999 9999999987
No 430
>PLN02785 Protein HOTHEAD
Probab=96.52 E-value=0.0029 Score=62.83 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
.||+||||||.+|+.+|.+|.+ +.+|+|+|++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 5999999999999999999999 68999999876
No 431
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.51 E-value=0.0048 Score=58.53 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=72.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhh-hHHHHH-HhhcCChhhHHHHHHHHHHHHhccccccCcC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM-VYLGLV-LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
-.|+|||+|++|.-+|..|++.|.+|.++++++..-.|.-. ..+... +....+....+ .........+.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---------i~~~v~~~~~~ 74 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---------IERKVTGARIY 74 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---------hheeeeeeEEE
Confidence 36899999999999999999999999999998743333222 111111 11111111110 00011111111
Q ss_pred CCCCCcchhhh----ccCCccccCchhhhhhcCCCeEEccC--ceeEE--CCe---EEecCCcEEeCcEEEECCCCCC
Q 016069 265 KPREGPFFMKA----AYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE---VIFENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 265 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~v~~~--v~~~~--~~~---v~~~~g~~~~~D~vi~atG~~~ 331 (396)
.+......... ..-....+.+.+.+..++.+.+++.+ +..+. .++ .+..++.++.+++||.|+|...
T Consensus 75 ~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 75 FPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 11000000000 00012344455556667788888887 55553 323 2223346889999999998653
No 432
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.50 E-value=0.0053 Score=58.48 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEec
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (396)
..|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 433
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.49 E-value=0.005 Score=60.97 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..+|+|||+|++|+-+|..|++.|.+|++++|.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45799999999999999999999999999999873
No 434
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.46 E-value=0.0027 Score=58.68 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=36.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCc
Q 016069 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (396)
Q Consensus 5 ~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg 44 (396)
++.+|++|||+|.-||.+|..|++.|.+|+++|++..+||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 3469999999999999999999999999999999876666
No 435
>PLN02697 lycopene epsilon cyclase
Probab=96.45 E-value=0.0036 Score=61.11 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=69.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKP 266 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
-.|+|||+|++|+-+|..+++.|.+|.++.+...+.. ..- .....+.-+. +.+.+ ...+.+ .....+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~-n~G--vW~~~l~~lg--l~~~i----~~~w~~----~~v~~~ 175 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN-NYG--VWEDEFKDLG--LEDCI----EHVWRD----TIVYLD 175 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC-ccc--cchhHHHhcC--cHHHH----HhhcCC----cEEEec
Confidence 4799999999999999999999999999976532211 110 0000111010 00000 001110 001011
Q ss_pred CCCcchhhhccC--CccccCchhhhhhcCCCeEEccC-ceeEEC--Ce---EEecCCcEEeCcEEEECCCCCC
Q 016069 267 REGPFFMKAAYG--KYPVIDAGTCEKIKSGQIQVLPG-IESIRG--NE---VIFENGHSHHFDSIVFCTGFKR 331 (396)
Q Consensus 267 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~--~~---v~~~~g~~~~~D~vi~atG~~~ 331 (396)
..........+. ....+.+.+.+.+.+.+++++.. |+.++. ++ +.+.+|.++.++.||.|+|...
T Consensus 176 ~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 176 DDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred CCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 110000000000 01223344455556667887655 777753 33 3557888999999999999865
No 436
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.44 E-value=0.0048 Score=58.63 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
++|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 7899999999999999999999999999999873
No 437
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.44 E-value=0.014 Score=55.15 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEec
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (396)
.|+|||+|++|+-+|..|++.|.+|.+++++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999988
No 438
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.44 E-value=0.0087 Score=56.74 Aligned_cols=32 Identities=19% Similarity=0.530 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhh--cCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 219 (396)
.|+|||+|.+|+-+|..|++. |.+|+++++.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999999 99999999875
No 439
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.39 E-value=0.0072 Score=57.72 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35799999999999999999999999999999884
No 440
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0066 Score=53.19 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcC-------CCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQS-------IPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g-------~~v~lie~~~ 40 (396)
..+|+|||+|..|+++|..+.+.. .+|++++.+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 469999999999999999888842 4788887543
No 441
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.34 E-value=0.00091 Score=62.18 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
.|+|||+|.+|+-+|..|++.|.+|++++|++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 689999999999999999999999999999883
No 442
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.32 E-value=0.01 Score=50.44 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEec
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (396)
..+++++|||+|..|...+..|.+.|++|+++.+.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 45899999999999999999999999999999654
No 443
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.30 E-value=0.012 Score=55.81 Aligned_cols=32 Identities=41% Similarity=0.531 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+|+|||+|+.|+-+|..|++.|.+|.++++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999876
No 444
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.30 E-value=0.0095 Score=56.35 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4699999999999999999999999999999873
No 445
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.28 E-value=0.0068 Score=58.44 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=36.3
Q ss_pred cccCchhhhhhcCCCeEEccC-ceeEE--CC----eEEecCCcEEeCcEEEECCCCCCC
Q 016069 281 PVIDAGTCEKIKSGQIQVLPG-IESIR--GN----EVIFENGHSHHFDSIVFCTGFKRS 332 (396)
Q Consensus 281 ~~~~~~~~~~~~~~~i~v~~~-v~~~~--~~----~v~~~~g~~~~~D~vi~atG~~~~ 332 (396)
..++..+.+...+.|++++.+ |+.+. ++ .|.+++|+++++|.+|=|+|++..
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 345555566667779999888 65553 33 377889999999999999999643
No 446
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.27 E-value=0.0088 Score=58.92 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=69.7
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (396)
..-+|||||.-|+.+|..|...|++++++.-.+.+- ... -...--..|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------------------------erQ-LD~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------------------------ERQ-LDRTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------------------------HHh-hhhHHHHHH
Confidence 457999999999999999999999999998765210 000 001112345
Q ss_pred HHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016069 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (396)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~ 154 (396)
+...++.++++ +.+...+.+.... ..-.+...++ ..+.+|.||.|+| -+|+..
T Consensus 194 ~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG--------~~i~ad~VV~a~G--IrPn~e 246 (793)
T COG1251 194 RRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG--------TEIPADLVVMAVG--IRPNDE 246 (793)
T ss_pred HHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC--------CcccceeEEEecc--cccccH
Confidence 66667778877 6666655554322 3344777776 6799999999999 677653
No 447
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.26 E-value=0.0052 Score=58.74 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+++|+|||+|+.|+.+|..|++.|..||++.+.+
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 347999999999999999999999999999998887
No 448
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.26 E-value=0.0058 Score=60.81 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 348899999999999999999999999999998876
No 449
>PRK13984 putative oxidoreductase; Provisional
Probab=96.22 E-value=0.0057 Score=61.44 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+++++|||+|+.|+.+|..|.+.|.+|+++.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 47889999999999999999999999999998876
No 450
>PRK10015 oxidoreductase; Provisional
Probab=96.21 E-value=0.0057 Score=58.61 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.++|||+|++|+-+|..|++.|.+|.+++|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 369999999999999999999999999999887
No 451
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.06 Score=48.82 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=67.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.++|+|||||-+.+-.|..|.+.+.+|+++=+++.+ ...+ .
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~----~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEE----I 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCH----H
Confidence 459999999999999999999999999999988632 1222 2
Q ss_pred HHHHHHhc-CCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016069 87 LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (396)
Q Consensus 87 l~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~ 153 (396)
+.+.+.+. ++.+ ++++.+..+.-++ -.. +...+.. |++ ..+.+|.++++.| ..|++
T Consensus 184 ~~~~l~~~~~i~~--~~~~~i~ei~G~~-v~~--v~l~~~~--~~~--~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNVKIEV--LTNTVVKEILGDD-VEG--VVLKNVK--GEE--KELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcCCeEE--EeCCceeEEecCc-cce--EEEEecC--Cce--EEEEeceEEEecC--CCCch
Confidence 33333332 4444 8999998887543 123 5555432 122 7899999999999 56664
No 452
>PRK06126 hypothetical protein; Provisional
Probab=96.20 E-value=0.013 Score=58.27 Aligned_cols=34 Identities=38% Similarity=0.611 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4579999999999999999999999999999887
No 453
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.17 E-value=0.0094 Score=56.09 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 58999999999999999999999999999875
No 454
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.14 E-value=0.012 Score=50.39 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEec
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (396)
.+++++|||||..|..=+..|.+.|++||++...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4789999999999999999999999999999644
No 455
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.14 E-value=0.0081 Score=58.89 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=28.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.|+|+|||+|++|+-.+..|.+.|-+++++++++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 3799999999999999999999999999999888
No 456
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.11 E-value=0.087 Score=48.59 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.2
Q ss_pred cceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 97 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
.++++-.++|.+++...+ +.+.+.+....+ |+. .++++|.||+||| -+..+|.
T Consensus 292 ~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~-~~~--~t~~~D~vIlATG--Y~~~~P~ 344 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGD-GRYRLTLRHHET-GEL--ETVETDAVILATG--YRRAVPS 344 (436)
T ss_pred CeeeccccceeeeecCCC-ceEEEEEeeccC-CCc--eEEEeeEEEEecc--cccCCch
Confidence 345678899999988763 558888877655 343 7899999999999 4555554
No 457
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.09 E-value=0.007 Score=58.24 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHHh----hcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLAN----HAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~----~g~~v~~~~r~~ 219 (396)
.|+|||+|++|+-+|..|++ .|.+|+++++.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 48999999999999999998 799999999954
No 458
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.05 E-value=0.032 Score=50.11 Aligned_cols=105 Identities=16% Similarity=0.069 Sum_probs=74.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
.+++++|||||..++.+|--++-.|.++.|+=|...+- . -..+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL-------------------------------R--~FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL-------------------------------R--GFDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh-------------------------------c--chhHHHHH
Confidence 46899999999999999999998999999988876210 0 11234445
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~~ 156 (396)
.+.+..+..++++ +.++.++.+.+..+ +...+.+..+ .....|.|+.|+| ..|+...+
T Consensus 235 ~v~~~~~~~ginv--h~~s~~~~v~K~~~-g~~~~i~~~~--------~i~~vd~llwAiG--R~Pntk~L 292 (478)
T KOG0405|consen 235 LVTEHLEGRGINV--HKNSSVTKVIKTDD-GLELVITSHG--------TIEDVDTLLWAIG--RKPNTKGL 292 (478)
T ss_pred HHHHHhhhcceee--cccccceeeeecCC-CceEEEEecc--------ccccccEEEEEec--CCCCcccc
Confidence 5555566667666 99999998887653 4344444443 3345899999999 67766544
No 459
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.03 E-value=0.048 Score=51.83 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=64.1
Q ss_pred EEECCChHHHHHH-HHHH----hcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016069 11 IIVGAGPSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (396)
Q Consensus 11 vIIG~G~aGl~~A-~~L~----~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 5567778888777 4443 369999999876521 23346777
Q ss_pred HHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEE-EEeecCCCCceeeEEEEeCEEEEeecC
Q 016069 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV-KASNLLSPGRVIEEYYSGRFLVVASGE 147 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v-~~~~~~~~g~~~~~~~~~d~vviAtG~ 147 (396)
.+.+..++.++.+ +.+++|++++..+ +.... .+.++ .. ..+++|.||+|+|.
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g----~~--~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH----GD--IPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC----ce--EEEECCEEEEeCCC
Confidence 7887777788776 9999999998764 33332 33333 21 67899999999994
No 460
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=0.022 Score=53.63 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhc---CceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHA---AKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g---~~v~~~~r~~ 219 (396)
.+|+|||+|.+|+.+|..|.+.- ..|.++.+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 47999999999999999999863 2388888776
No 461
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.96 E-value=0.012 Score=52.08 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=28.3
Q ss_pred ceeEECC--eEEecCCcEEeCcEEEECCCCCCCcccc
Q 016069 302 IESIRGN--EVIFENGHSHHFDSIVFCTGFKRSTNVW 336 (396)
Q Consensus 302 v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~~~ 336 (396)
|.+++++ .|.+.+|++|.+|.+|.|+|..-+...+
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence 5555544 5899999999999999999999887543
No 462
>PRK06185 hypothetical protein; Provisional
Probab=95.91 E-value=0.014 Score=55.70 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4579999999999999999999999999999986
No 463
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.91 E-value=0.014 Score=58.04 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
...|+|||+|++|+-+|..|++.|.+|+++++.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4679999999999999999999999999999987
No 464
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.90 E-value=0.0089 Score=48.59 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+|+|||||..|.++|..|+++|.+|+|+.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 465
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.89 E-value=0.025 Score=56.64 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 185 ~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
...+|+|||+|..|+-+|..|.+.|.+|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 36789999999999999999999999999999976
No 466
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.89 E-value=0.0088 Score=58.19 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=32.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhc-CCCeEEEecCCCC
Q 016069 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCY 42 (396)
Q Consensus 6 ~~~~vvIIG~G~aGl~~A~~L~~~-g~~v~lie~~~~~ 42 (396)
..||.||||||.||+..|.+|.+. ..+|+|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999986 5799999987633
No 467
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.85 E-value=0.012 Score=55.73 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhh---cCceEEEEec
Q 016069 187 KNVLVVGSGNSGMEIALDLANH---AAKTSLVIRS 218 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~---g~~v~~~~r~ 218 (396)
-+|+|||+|.+|+-+|..|++. |.+|++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999995
No 468
>PRK07538 hypothetical protein; Provisional
Probab=95.77 E-value=0.019 Score=54.86 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
+|+|||+|..|+-+|..|++.|.+|++++|.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 689999999999999999999999999999873
No 469
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.77 E-value=0.037 Score=52.44 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999999999999999983
No 470
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.77 E-value=0.098 Score=50.80 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999999875
No 471
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.76 E-value=0.0096 Score=40.65 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=27.1
Q ss_pred EEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 191 VVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 191 VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
|||+|.+|+-+|..|++.+.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999988
No 472
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.67 E-value=0.023 Score=52.36 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+|+|||||..|+-.|..|.+.|-+|.+++.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4689999999999999999999999999998765
No 473
>PRK11445 putative oxidoreductase; Provisional
Probab=95.65 E-value=0.013 Score=54.71 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=29.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.|+|||+|++|+-+|..|++. .+|++++|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 589999999999999999999 9999999887
No 474
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.65 E-value=0.013 Score=60.47 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.5
Q ss_pred eEEEEcCCCCHHHHHHHHHhh--cCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~--g~~v~~~~r~~~ 220 (396)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 789999999873
No 475
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.017 Score=49.89 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
++++|||+|..|.+.|..|.+.|..|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 479999999999999999999999999999876
No 476
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.56 E-value=0.018 Score=47.97 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.3
Q ss_pred eEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 9 ~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999875
No 477
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.49 E-value=0.012 Score=47.37 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccCcCCCCC
Q 016069 189 VLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPRE 268 (396)
Q Consensus 189 i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (396)
|+|+|+|.+|.-+|..|.+.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~------------------------------------------------- 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP------------------------------------------------- 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------------------------------------------------
Q ss_pred CcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECCeEEecCC--cEEeCcEEEECC
Q 016069 269 GPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENG--HSHHFDSIVFCT 327 (396)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~~v~~~~g--~~~~~D~vi~at 327 (396)
..+.+++.++.+... -...........+. ..-++|+||+|+
T Consensus 32 ------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 32 ------------------RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp ------------------HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred ------------------cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 478
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.46 E-value=0.044 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35799999999999999999999999999999984
No 479
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.40 E-value=0.012 Score=44.09 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 184 ~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.++++++|||+|..|..-+..|.+.|++|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 458999999999999999999999999999998764
No 480
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.37 E-value=0.028 Score=51.20 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCCCCCCCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 1 M~~~~~~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
|.......+|.|||+|..|...|..++..|++|+++|..+
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4433334679999999999999999999999999999875
No 481
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.35 E-value=0.15 Score=50.04 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999877
No 482
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.057 Score=48.39 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
+-+-+|||||..+|.||-.|.-.|+++++.=|+-.+.| ...++.+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG----------------------------------FDqdmae~ 243 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG----------------------------------FDQDMAEL 243 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc----------------------------------ccHHHHHH
Confidence 35789999999999999999999999999887642211 23466677
Q ss_pred HHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016069 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (396)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s~p~~~~ 155 (396)
+.+..++.|+.. ......+.++..+ .+..+|...+..+ +++ .+-.||.|+.|.| ..+..-+
T Consensus 244 v~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t-~~~--~~~~ydTVl~AiG--R~~~~~~ 304 (503)
T KOG4716|consen 244 VAEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNT-GEE--GEEEYDTVLWAIG--RKALTDD 304 (503)
T ss_pred HHHHHHHhCCce--eecccceeeeecc-CCcEEEEeecccc-ccc--ccchhhhhhhhhc--cccchhh
Confidence 777777788875 4444555665544 3556676665544 232 5568999999999 5554433
No 483
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.032 Score=54.00 Aligned_cols=83 Identities=25% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCceeeehhhhHHHHHHhhcCChhhHHHHHHHHHHHHhccccccC
Q 016069 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYG 262 (396)
Q Consensus 183 ~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (396)
+..+++++|+|+|.+|+.+|..|++.|.+|+++.+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~------------------------------------------- 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE------------------------------------------- 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-------------------------------------------
Q ss_pred cCCCCCCcchhhhccCCccccCchhhhhhcCCCeEEccC-ceeEECCeEEecCCcEEeCcEEEECCCCCCCcccc
Q 016069 263 IHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVW 336 (396)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~ 336 (396)
.... +...+.+.+.++++..+ ... ...-.+|.||.++|..++.+.+
T Consensus 39 -----------------~~~~-~~~~~~l~~~~~~~~~~~~~~----------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 39 -----------------EDQL-KEALEELGELGIELVLGEYPE----------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -----------------hHHH-HHHHHHHHhcCCEEEeCCcch----------hHhhcCCEEEECCCCCCCCHHH
No 484
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.29 E-value=0.14 Score=50.39 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeceEEEEEEEcCCCCceEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016069 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~~~~g~~~~~~~~~d~vviAtG~~s 149 (396)
.+...+...+...+.++|..+ +.+++|+++..++ +..+.+++.+..+ |+. ..++++.||.|+|.|+
T Consensus 125 vdp~~l~~al~~~A~~~Ga~i--~~~t~V~~i~~~~-~~v~gv~v~~~~~-g~~--~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 125 VDPFRLVAANVLDAQEHGARI--FTYTKVTGLIREG-GRVTGVKVEDHKT-GEE--ERIEAQVVINAAGIWA 190 (516)
T ss_pred ECHHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEEC-CEEEEEEEEEcCC-CcE--EEEEcCEEEECCCcch
Confidence 344566666667778888776 8999999998754 2333455543211 221 5799999999999876
No 485
>PRK06996 hypothetical protein; Provisional
Probab=95.28 E-value=0.0098 Score=56.51 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhc----CceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHA----AKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g----~~v~~~~r~~ 219 (396)
..|+|||+|+.|+-+|..|++.| .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999986 4699999876
No 486
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.21 E-value=0.041 Score=51.68 Aligned_cols=34 Identities=44% Similarity=0.688 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.++++|||||.+|++.|..|++.|-+|+++.+.|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6799999999999999999999999999999998
No 487
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.13 E-value=0.028 Score=53.32 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCCCCCccccc
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~ 48 (396)
.+||||+|-|..-..+|..|++.|.+|+-+|+++..||.|..
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 699999999999999999999999999999999999997764
No 488
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.11 E-value=0.021 Score=53.78 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
++|+|||+|.+|+++|..|++.|.+|+++++++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5799999999999999999999999999998764
No 489
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.05 E-value=0.024 Score=54.16 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCCcccccCCcC--ceeecc
Q 016069 17 PSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHL 58 (396)
Q Consensus 17 ~aGl~~A~~L~~~g~~v~lie~~~~~gg~~~~~~~~--~~~~~~ 58 (396)
+|||+||..|++.|++|+|+|+++++||.......+ +...+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~ 44 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFEL 44 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEES
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecC
Confidence 589999999999999999999999999955443333 444443
No 490
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.00 E-value=0.086 Score=45.89 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 187 ~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.+|+|||+|..|+-+|..|...|.+|++++++.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 369999999999999999999999999999876
No 491
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.98 E-value=0.05 Score=49.45 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
+|.|+|+|..|.-++..|++.|.+|+++.|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 78999999999999999999998899998887
No 492
>PLN02985 squalene monooxygenase
Probab=94.84 E-value=0.031 Score=54.81 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
...|+|||+|..|+-+|..|++.|.+|++++|.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4579999999999999999999999999999975
No 493
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.84 E-value=0.03 Score=46.81 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=27.0
Q ss_pred CeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 8 ~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
++|.|||.|..|+.+|..|+++|++|+.+|...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999876
No 494
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.79 E-value=0.026 Score=53.37 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecCc
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (396)
+|+|||+|.+|+|+|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 689999999999999999999999999998773
No 495
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.77 E-value=0.092 Score=48.05 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
..+|.|+|.|..|.-+|..|++.|.+|+++.|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999999876
No 496
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.75 E-value=0.25 Score=48.33 Aligned_cols=31 Identities=35% Similarity=0.711 Sum_probs=28.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCceEEEEecC
Q 016069 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (396)
Q Consensus 188 ~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (396)
.|+|||+|.+|+-+|..+++.|. |.++++.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 59999999999999999999987 99999885
No 497
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.67 E-value=0.035 Score=41.45 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
..+++|||||..|..-+..|.+.|.+|+++.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 5789999999999999999999999999999873
No 498
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.60 E-value=0.098 Score=52.79 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhh-cCceEEEEecCc
Q 016069 186 GKNVLVVGSGNSGMEIALDLANH-AAKTSLVIRSPV 220 (396)
Q Consensus 186 ~~~i~VvG~G~~g~e~a~~l~~~-g~~v~~~~r~~~ 220 (396)
.-.|+|||+|++|+-+|..|++. |.+|.++++.+.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 35799999999999999999995 999999999874
No 499
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.55 E-value=0.068 Score=48.92 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhcCCCeEEEecCC
Q 016069 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (396)
Q Consensus 7 ~~~vvIIG~G~aGl~~A~~L~~~g~~v~lie~~~ 40 (396)
.++|+|||+|..|...|..|++.|.+|+++.+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4789999999999999999999999999999864
No 500
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.55 E-value=0.039 Score=44.77 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCceEEEEec
Q 016069 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (396)
Q Consensus 183 ~~~~~~i~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (396)
+..+++++|||||..|..-+..|.+.|++|+++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Done!