BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016070
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp And
Mn2+
pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
Acetyllactosamine, Udp, And Mn2+
Length = 253
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 31/239 (12%)
Query: 147 VITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYE-TAELLRKTGVMYRQLVS 205
V+TPTY+R +Q L R+A L L P L W+VVE+ TA LLR TG+ Y L
Sbjct: 7 VVTPTYSRPVQKAELTRMANTL-LHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHV 65
Query: 206 Q-----KNSSSVKD----RGVHQRNLAL----EHIERHRLD-GIVYFADDDNIYTMDLFD 251
+ K +D RG QRNLAL E R+ G+VYFADDDN Y+++LF+
Sbjct: 66 ETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFE 125
Query: 252 SLREISRFGTWPVAMLAQSKNKAIIEGPVCNGS-QVIGWHTNEKSKRLRRFHVDMSGFAF 310
+R R WPVA + + E P NG+ +V+ W T R F +DM+GFA
Sbjct: 126 EMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVRWKTVFDPH--RPFAIDMAGFAV 179
Query: 311 NSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWH 369
N ++ QR S + +L VK G+QE++ + ++V + +E +C++IL WH
Sbjct: 180 NLRLI-----LQR--SQAYFKLRGVKGGYQESSLLRELV-TLNDLEPKAANCTKILVWH 230
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|B Chain B, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|C Chain C, Crystal Structure Of Human Glcat-S Apo Form
pdb|2D0J|D Chain D, Crystal Structure Of Human Glcat-S Apo Form
Length = 246
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 26/243 (10%)
Query: 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYE-TAELLRKTGVMYRQL 203
+ ITPTY+R +Q L RLA R V L WI+VE+ AA E + L + G+ L
Sbjct: 5 IYAITPTYSRPVQKAELTRLANTFRQVAQ-LHWILVEDAAARSELVSRFLARAGLPSTHL 63
Query: 204 ---VSQKNSSSVKDRGVHQRNLALEHI-ERHRLD----GIVYFADDDNIYTMDLFDSLRE 255
++ R QRN L + +RH+ G+++FADDDN Y+++LF +R
Sbjct: 64 HVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRT 123
Query: 256 ISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFN-STI 314
+ WPV ++ + E P+ +V+GW+T ++ R F +DM+GFA + I
Sbjct: 124 TRKVSVWPVGLVGGRR----YERPLVENGKVVGWYTGWRAD--RPFAIDMAGFAVSLQVI 177
Query: 315 LWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDA 374
L +PK ++ + + G QE+ F++Q+ E ++E +C+++L WH +
Sbjct: 178 LSNPK--------AVFKRRGSQPGMQESDFLKQITTVE-ELEPKANNCTKVLVWHTRTEK 228
Query: 375 HNL 377
NL
Sbjct: 229 VNL 231
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
pdb|3CU0|B Chain B, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In
Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
Length = 281
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 122/250 (48%), Gaps = 43/250 (17%)
Query: 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEE-NAASYETAELLRKTGVMYRQL 203
+ V+TPTY R +Q L RL+Q L LV P L W++VE+ + + LL +G+++ L
Sbjct: 23 IYVVTPTYARLVQKAELVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAASGLLFTHL 81
Query: 204 V---------SQKNSSSVKDRGVHQRNLALEHIERHR--------------LDGIVYFAD 240
V + V RGV QRN AL+ + R R G+VYFAD
Sbjct: 82 VVLTPKAQRLREGEPGWVHPRGVEQRNKALDWL-RGRGGAVGGEKDPPPPGTQGVVYFAD 140
Query: 241 DDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRR 300
DDN Y+ +LF+ +R WPV ++ + EGP +V+G+HT + R
Sbjct: 141 DDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPS--RP 194
Query: 301 FHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLD-TVKEGFQETTFIEQVVEDESQMEGTP 359
F VDM+GFA +L D +P + Q D T G E++ + +V D +E
Sbjct: 195 FPVDMAGFAVALPLLLD-----KPNA----QFDSTAPRGHLESSLLSHLV-DPKDLEPRA 244
Query: 360 PSCSRILNWH 369
+C+R+L WH
Sbjct: 245 ANCTRVLVWH 254
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1FGG|B Chain B, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I)
Complexed With Gal-Gal-Xyl, Udp, And Mn2+
pdb|1KWS|A Chain A, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
pdb|1KWS|B Chain B, Crystal Structure Of Beta1,3-glucuronyltransferase I In
Complex With The Active Udp-glcua Donor
Length = 261
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 122/250 (48%), Gaps = 43/250 (17%)
Query: 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEE-NAASYETAELLRKTGVMYRQL 203
+ V+TPTY R +Q L RL+Q L LV P L W++VE+ + + LL +G+++ L
Sbjct: 3 IYVVTPTYARLVQKAELVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAASGLLFTHL 61
Query: 204 V---------SQKNSSSVKDRGVHQRNLALEHIERHR--------------LDGIVYFAD 240
V + V RGV QRN AL+ + R R G+VYFAD
Sbjct: 62 VVLTPKAQRLREGEPGWVHPRGVEQRNKALDWL-RGRGGAVGGEKDPPPPGTQGVVYFAD 120
Query: 241 DDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRR 300
DDN Y+ +LF+ +R WPV ++ + EGP +V+G+HT + R
Sbjct: 121 DDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPS--RP 174
Query: 301 FHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLD-TVKEGFQETTFIEQVVEDESQMEGTP 359
F VDM+GFA +L D +P + Q D T G E++ + +V D +E
Sbjct: 175 FPVDMAGFAVALPLLLD-----KPNA----QFDSTAPRGHLESSLLSHLV-DPKDLEPRA 224
Query: 360 PSCSRILNWH 369
+C+R+L WH
Sbjct: 225 ANCTRVLVWH 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,690,977
Number of Sequences: 62578
Number of extensions: 465453
Number of successful extensions: 959
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)