Query 016070
Match_columns 396
No_of_seqs 162 out of 276
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02458 transferase, transfer 100.0 3E-110 6E-115 819.5 26.8 321 47-375 9-341 (346)
2 cd00218 GlcAT-I Beta1,3-glucur 100.0 1.7E-96 4E-101 693.6 22.1 217 143-374 1-223 (223)
3 KOG1476 Beta-1,3-glucuronyltra 100.0 1.1E-92 2.3E-97 691.2 22.3 258 104-377 45-314 (330)
4 PF03360 Glyco_transf_43: Glyc 100.0 3.5E-81 7.6E-86 585.2 13.4 198 164-374 1-207 (207)
5 PF00535 Glycos_transf_2: Glyc 97.9 2.8E-05 6E-10 64.7 5.9 94 147-253 2-99 (169)
6 cd04185 GT_2_like_b Subfamily 96.7 0.015 3.2E-07 51.7 9.7 99 147-256 1-103 (202)
7 cd04184 GT2_RfbC_Mx_like Myxoc 96.5 0.046 1E-06 48.2 11.4 99 143-254 1-105 (202)
8 cd04196 GT_2_like_d Subfamily 96.4 0.025 5.5E-07 49.9 9.4 97 147-256 2-103 (214)
9 cd06421 CESA_CelA_like CESA_Ce 96.3 0.046 1E-06 49.1 10.8 101 143-254 1-106 (234)
10 cd06423 CESA_like CESA_like is 96.3 0.045 9.7E-07 45.1 9.7 94 147-253 1-99 (180)
11 cd06433 GT_2_WfgS_like WfgS an 96.1 0.03 6.5E-07 48.4 8.3 93 147-253 2-96 (202)
12 PLN02726 dolichyl-phosphate be 96.1 0.076 1.6E-06 49.5 11.3 102 142-254 8-115 (243)
13 cd02522 GT_2_like_a GT_2_like_ 96.0 0.034 7.3E-07 49.7 8.5 91 146-253 2-93 (221)
14 cd04195 GT2_AmsE_like GT2_AmsE 96.0 0.068 1.5E-06 47.2 10.1 96 147-253 2-101 (201)
15 cd02511 Beta4Glucosyltransfera 95.9 0.03 6.5E-07 51.9 7.7 93 145-256 2-95 (229)
16 PRK10018 putative glycosyl tra 95.8 0.14 3E-06 50.2 12.4 100 141-252 3-105 (279)
17 PRK10063 putative glycosyl tra 95.7 0.1 2.2E-06 49.9 10.4 102 143-256 1-106 (248)
18 cd04192 GT_2_like_e Subfamily 95.6 0.11 2.4E-06 46.3 10.0 98 147-255 1-105 (229)
19 cd04187 DPM1_like_bac Bacteria 95.6 0.11 2.4E-06 45.4 9.8 99 147-255 1-103 (181)
20 cd04186 GT_2_like_c Subfamily 95.6 0.089 1.9E-06 44.1 8.6 95 147-255 1-97 (166)
21 cd06435 CESA_NdvC_like NdvC_li 95.5 0.16 3.4E-06 46.3 10.6 100 147-254 2-106 (236)
22 COG0463 WcaA Glycosyltransfera 95.4 0.14 3.1E-06 41.2 9.0 97 142-252 2-102 (291)
23 cd06436 GlcNAc-1-P_transferase 95.3 0.14 3E-06 46.0 9.7 103 147-255 1-112 (191)
24 cd00761 Glyco_tranf_GTA_type G 95.2 0.22 4.9E-06 39.9 9.5 95 147-253 1-98 (156)
25 cd02525 Succinoglycan_BP_ExoA 94.8 0.26 5.7E-06 44.5 9.9 97 145-254 2-103 (249)
26 cd06913 beta3GnTL1_like Beta 1 94.8 0.28 6E-06 44.4 10.1 94 147-252 1-104 (219)
27 cd06434 GT2_HAS Hyaluronan syn 94.6 0.49 1.1E-05 42.8 11.2 95 145-255 2-100 (235)
28 PRK10073 putative glycosyl tra 94.4 0.52 1.1E-05 47.0 11.8 100 142-255 5-108 (328)
29 cd06427 CESA_like_2 CESA_like_ 94.4 0.66 1.4E-05 42.9 11.7 100 143-253 1-105 (241)
30 cd06442 DPM1_like DPM1_like re 94.3 0.37 7.9E-06 43.2 9.6 96 147-255 1-101 (224)
31 cd06438 EpsO_like EpsO protein 94.0 0.63 1.4E-05 41.1 10.2 98 147-254 1-103 (183)
32 PRK10714 undecaprenyl phosphat 93.8 1.1 2.3E-05 44.8 12.6 102 142-253 5-111 (325)
33 cd06439 CESA_like_1 CESA_like_ 93.5 1 2.2E-05 41.4 11.0 101 141-253 27-130 (251)
34 cd04188 DPG_synthase DPG_synth 93.4 0.43 9.4E-06 42.9 8.4 100 147-256 1-106 (211)
35 cd02526 GT2_RfbF_like RfbF is 93.4 0.33 7.2E-06 43.9 7.6 93 147-253 1-96 (237)
36 TIGR03469 HonB hopene-associat 93.3 0.99 2.1E-05 45.8 11.5 108 142-253 39-154 (384)
37 cd02520 Glucosylceramide_synth 92.9 0.49 1.1E-05 42.4 7.9 102 144-255 2-109 (196)
38 cd04179 DPM_DPG-synthase_like 92.9 0.85 1.8E-05 39.4 9.1 95 147-255 1-102 (185)
39 PTZ00260 dolichyl-phosphate be 92.6 2.4 5.1E-05 42.6 13.0 104 140-253 67-183 (333)
40 cd06420 GT2_Chondriotin_Pol_N 92.5 1.3 2.8E-05 38.3 9.8 97 147-255 1-102 (182)
41 TIGR01556 rhamnosyltran L-rham 92.5 0.74 1.6E-05 43.7 8.9 91 151-254 2-95 (281)
42 cd06437 CESA_CaSu_A2 Cellulose 92.2 2 4.3E-05 39.2 11.0 101 144-255 2-110 (232)
43 PRK13915 putative glucosyl-3-p 91.0 2.3 4.9E-05 42.3 10.8 106 141-254 29-138 (306)
44 PRK11204 N-glycosyltransferase 90.5 3.5 7.7E-05 41.6 11.8 99 142-254 53-156 (420)
45 cd02510 pp-GalNAc-T pp-GalNAc- 89.9 3.1 6.6E-05 40.1 10.4 95 147-253 2-104 (299)
46 PF10111 Glyco_tranf_2_2: Glyc 87.9 3.8 8.3E-05 39.6 9.6 98 147-255 2-111 (281)
47 TIGR03111 glyc2_xrt_Gpos1 puta 86.8 3 6.5E-05 43.2 8.6 97 142-254 48-153 (439)
48 PF13641 Glyco_tranf_2_3: Glyc 84.0 5.3 0.00012 36.0 7.9 101 144-254 2-108 (228)
49 PRK14583 hmsR N-glycosyltransf 82.5 10 0.00022 39.2 10.2 96 142-253 74-176 (444)
50 TIGR03030 CelA cellulose synth 78.3 27 0.00058 38.9 12.3 100 142-253 130-249 (713)
51 TIGR03472 HpnI hopanoid biosyn 55.6 61 0.0013 32.7 8.6 104 142-254 40-148 (373)
52 PF02390 Methyltransf_4: Putat 52.1 35 0.00077 31.9 5.8 106 141-256 40-149 (195)
53 PF05679 CHGN: Chondroitin N-a 51.2 88 0.0019 33.6 9.3 211 141-377 245-477 (499)
54 cd00571 UreE UreE urease acces 47.4 76 0.0016 28.2 6.9 53 143-205 76-134 (136)
55 PRK05799 coproporphyrinogen II 45.4 2E+02 0.0042 29.2 10.3 89 143-233 53-150 (374)
56 PRK11498 bcsA cellulose syntha 45.1 2.3E+02 0.0051 32.9 11.8 98 142-252 259-359 (852)
57 PRK05628 coproporphyrinogen II 44.7 1.6E+02 0.0035 29.9 9.6 91 142-233 60-159 (375)
58 cd02514 GT13_GLCNAC-TI GT13_GL 44.0 2.1E+02 0.0047 29.4 10.4 106 147-256 4-121 (334)
59 KOG1490 GTP-binding protein CR 43.6 21 0.00046 39.2 3.2 43 210-256 223-278 (620)
60 PF05194 UreE_C: UreE urease a 43.5 70 0.0015 26.2 5.6 53 144-206 3-61 (87)
61 PF14263 DUF4354: Domain of un 43.0 11 0.00023 33.9 0.7 18 232-249 100-118 (124)
62 PF06858 NOG1: Nucleolar GTP-b 42.4 17 0.00036 28.6 1.7 34 219-256 5-44 (58)
63 PRK08208 coproporphyrinogen II 41.9 1.9E+02 0.004 30.3 9.8 92 143-234 93-193 (430)
64 COG1216 Predicted glycosyltran 40.5 2.1E+02 0.0046 27.9 9.5 103 143-255 3-107 (305)
65 PRK08446 coproporphyrinogen II 39.5 3E+02 0.0064 27.9 10.6 89 142-233 52-149 (350)
66 PRK13397 3-deoxy-7-phosphohept 39.4 34 0.00073 33.9 3.7 72 179-252 24-97 (250)
67 PRK08207 coproporphyrinogen II 38.9 2.9E+02 0.0062 29.8 10.8 90 143-233 220-320 (488)
68 cd00532 MGS-like MGS-like doma 37.4 46 0.001 28.1 3.8 69 158-243 11-80 (112)
69 PRK13398 3-deoxy-7-phosphohept 34.3 51 0.0011 32.6 4.1 73 179-253 36-110 (266)
70 PRK10187 trehalose-6-phosphate 33.2 54 0.0012 31.9 4.0 40 214-256 170-212 (266)
71 PRK08599 coproporphyrinogen II 32.0 3.2E+02 0.007 27.7 9.5 92 143-235 53-153 (377)
72 PF06295 DUF1043: Protein of u 32.0 23 0.0005 31.3 1.1 13 60-72 3-15 (128)
73 PF05116 S6PP: Sucrose-6F-phos 31.8 70 0.0015 30.8 4.5 75 174-251 119-198 (247)
74 PF14773 VIGSSK: Helicase-asso 29.9 35 0.00076 27.2 1.7 20 186-205 25-44 (61)
75 KOG0474 Cl- channel CLC-7 and 29.0 24 0.00052 39.5 0.9 30 47-76 76-105 (762)
76 PF13334 DUF4094: Domain of un 27.9 42 0.00091 28.5 2.0 17 53-69 3-19 (95)
77 COG3763 Uncharacterized protei 27.6 37 0.0008 27.8 1.5 17 56-72 7-23 (71)
78 PF03672 UPF0154: Uncharacteri 27.4 32 0.0007 27.6 1.1 14 59-72 3-16 (64)
79 COG1395 Predicted transcriptio 27.2 1.3E+02 0.0028 31.0 5.6 20 153-172 53-72 (313)
80 PF06305 DUF1049: Protein of u 25.9 38 0.00081 25.9 1.2 26 52-77 17-42 (68)
81 PRK09249 coproporphyrinogen II 25.8 3.8E+02 0.0083 28.1 9.0 90 143-233 104-202 (453)
82 PRK07379 coproporphyrinogen II 25.8 5E+02 0.011 26.9 9.7 89 143-235 68-168 (400)
83 PRK13347 coproporphyrinogen II 24.9 3.5E+02 0.0075 28.5 8.5 91 143-234 105-204 (453)
84 TIGR00539 hemN_rel putative ox 24.8 5.7E+02 0.012 25.9 9.8 91 143-234 53-152 (360)
85 PRK05904 coproporphyrinogen II 24.5 3.9E+02 0.0085 27.3 8.6 88 143-233 58-154 (353)
86 PF11688 DUF3285: Protein of u 23.7 47 0.001 25.0 1.3 21 53-73 20-42 (45)
87 TIGR03693 ocin_ThiF_like putat 23.4 85 0.0018 35.2 3.8 56 231-293 204-262 (637)
88 PRK15481 transcriptional regul 23.2 3.4E+02 0.0075 27.7 7.9 89 141-241 164-253 (431)
89 PRK14716 bacteriophage N4 adso 22.1 6.5E+02 0.014 27.4 10.0 108 140-253 63-179 (504)
90 PRK13263 ureE urease accessory 21.3 3.2E+02 0.0069 26.6 6.8 55 143-207 78-138 (206)
91 PF00583 Acetyltransf_1: Acety 21.2 1.2E+02 0.0026 22.5 3.3 42 212-253 37-80 (83)
92 cd01424 MGS_CPS_II Methylglyox 20.6 1.6E+02 0.0034 24.5 4.1 69 157-243 11-79 (110)
93 PF12072 DUF3552: Domain of un 20.5 56 0.0012 30.8 1.5 18 56-73 3-20 (201)
94 COG0220 Predicted S-adenosylme 20.4 1.4E+02 0.0031 28.9 4.3 65 189-255 111-179 (227)
95 PRK13396 3-deoxy-7-phosphohept 20.2 1.4E+02 0.003 31.2 4.3 72 180-253 111-184 (352)
96 PRK11677 hypothetical protein; 20.0 52 0.0011 29.8 1.1 13 60-72 7-19 (134)
No 1
>PLN02458 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-110 Score=819.48 Aligned_cols=321 Identities=39% Similarity=0.712 Sum_probs=267.3
Q ss_pred ccchhhhhhhhhhHHHHHHHHhhhcccCccccccccccccccc--cCCCC-CcccCCCCCcCcccccccceeeccc--cc
Q 016070 47 LRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFE--IKPPH-VNVQLDSDNRSDRMSKRDEILLDAV--SL 121 (396)
Q Consensus 47 ~~~~~w~r~~~~~~lcF~~G~f~g~~p~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 121 (396)
.+.||||||++||+|||+||||+||+|.++++++|++...+-+ +.|.+ ..........++.+...-.-.--|+ +.
T Consensus 9 ~~~~lwkka~~h~slcfvmgfftgfap~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (346)
T PLN02458 9 KKVQLWKKAVVHFSLCFVMGFFTGFAPAGKASFFSSHEAASNKSQFSPQPVEMLHVATTPHHSNLNRTLINAQTPVPAPA 88 (346)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCcCccchhhcccccccccccCCCCCcccccccCccccccceeccccccCCCccCh
Confidence 3679999999999999999999999999999999887654421 11111 1011112222332221111000122 11
Q ss_pred cc--cccccccccccccCCCCCCceEEEEcccCC-chhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCC
Q 016070 122 GV--DFRNEINTVESYRYDFEPRKQLIVITPTYN-RAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGV 198 (396)
Q Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~IivVTPTy~-R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl 198 (396)
.. ..+......+.++.++.++|+||||||||. |++|+||||||||||||||||||||||||+..+++|++||++|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrsGl 168 (346)
T PLN02458 89 RSAESETASLLEKEEEEPKLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKTGI 168 (346)
T ss_pred hhhhhhhhhhhhccccccCCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHcCC
Confidence 11 111112222445778889999999999998 799999999999999999999999999999999999999999999
Q ss_pred ceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEec
Q 016070 199 MYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEG 278 (396)
Q Consensus 199 ~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEG 278 (396)
||+||++++++++.+.|+++|||+||+|||+|+++||||||||||+||++||||||+||+||+||||++|++++++.|||
T Consensus 169 ~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~~~~~vEG 248 (346)
T PLN02458 169 MYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANRNKVIIEG 248 (346)
T ss_pred ceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeecccccceeEC
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCeeeEEEcCCCC-CCCcccccccceeeeeeccccCCcCCCCCCCccccccccccCCcchh-hHHHhh-ccCCCce
Q 016070 279 PVCNGSQVIGWHTNEKS-KRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQET-TFIEQV-VEDESQM 355 (396)
Q Consensus 279 Pvc~~~kVvGW~t~~~~-~~~R~fpiDMAGFA~Ns~lLwdp~r~~rP~s~~~~~~d~vk~G~qEs-~fl~~L-v~d~~~l 355 (396)
|+|++|||+|||+.|.. .+.|+|||||||||||++|||||++|+||.+ +++|+||| .|++|| ++|++++
T Consensus 249 Pvc~~gkVvGWht~w~~~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~--------~~~~~qeS~~Fv~ql~~~de~q~ 320 (346)
T PLN02458 249 PVCDSSQVIGWHLKKMNNETETRPPIHISSFAFNSSILWDPERWGRPSS--------VQGTSQNSIKFVKQVALEDETKL 320 (346)
T ss_pred ceecCCeEeEEeccccccCCCCCCCcceeeeeeehhhhcChhhhCCCCC--------CCccchHHHHHHHHHhhcccccc
Confidence 99999999999999852 3569999999999999999999999999864 67899999 999999 6999999
Q ss_pred eccC-CCCCEEEEEeccCCCC
Q 016070 356 EGTP-PSCSRILNWHLHLDAH 375 (396)
Q Consensus 356 Epla-~~C~kVLVWHtrte~~ 375 (396)
||++ +||++|||||++++..
T Consensus 321 egipa~~CskVmvWhl~~~~~ 341 (346)
T PLN02458 321 KGIPPEDCSKIMLWRLNFPTR 341 (346)
T ss_pred ccCCcCCCCEEEEEEeccCCc
Confidence 9996 6999999999999865
No 2
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=100.00 E-value=1.7e-96 Score=693.64 Aligned_cols=217 Identities=49% Similarity=0.918 Sum_probs=207.8
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC-CCHHHHHHHHhcCCceeEeeecCC--CCCCCCcchhH
Q 016070 143 KQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA-ASYETAELLRKTGVMYRQLVSQKN--SSSVKDRGVHQ 219 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~-~s~~va~lL~~sGl~y~HL~~~~~--~~~~~~rg~~Q 219 (396)
|+||||||||+|++|+|||||||||||||| |||||||||+. .|++|+++|++|||||+||+++++ .++.++||++|
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~q 79 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQ 79 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCcccHHH
Confidence 589999999999999999999999999998 99999999998 799999999999999999999987 56778999999
Q ss_pred HHHHHHHHHhh---CCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceeeCCeeeEEEcCCCCC
Q 016070 220 RNLALEHIERH---RLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSK 296 (396)
Q Consensus 220 RN~AL~~Ir~~---~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~~~kVvGW~t~~~~~ 296 (396)
||+||+|||+| +++||||||||||+||++||||||+||+||+||||++|+ +.||||+|++|||+|||+.|.+
T Consensus 80 Rn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR~i~~vg~WPVglvg~----~~vegP~c~~gkV~gw~~~w~~- 154 (223)
T cd00218 80 RNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKRVGVWPVGLVGG----LRVEGPVCENGKVVGWHTAWKP- 154 (223)
T ss_pred HHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHhccCeeeEEEeeeecC----ceeeccEeeCCeEeEEecCCCC-
Confidence 99999999999 999999999999999999999999999999999999997 8899999999999999999976
Q ss_pred CCcccccccceeeeeeccccCCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCEEEEEeccCCC
Q 016070 297 RLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDA 374 (396)
Q Consensus 297 ~~R~fpiDMAGFA~Ns~lLwdp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~kVLVWHtrte~ 374 (396)
.|+||||||||||||++|||+++|.+|.+ +++||||++||+||+.|+++|||+|+||+||||||||||+
T Consensus 155 -~R~f~idmAGFA~n~~ll~~~~~~~~~~~--------~~~g~~es~fl~~L~~~~~~~Epl~~~c~~VlvWhtrte~ 223 (223)
T cd00218 155 -ERPFPIDMAGFAFNSKLLWDPPRAVFPYS--------AKRGYQESSFLEQLVLDRKELEPLANNCSKVLVWHTRTEK 223 (223)
T ss_pred -CCCCcceeeeEEEehhhhccCccccCCCC--------CCCcchhHHhHHHHcccHHhcccccCCCCEEEEEeeecCC
Confidence 59999999999999999999999987743 6799999999999999999999999999999999999985
No 3
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-92 Score=691.16 Aligned_cols=258 Identities=40% Similarity=0.659 Sum_probs=226.7
Q ss_pred cCcccccccceeeccccccc----cc-cccccccccccCCCCCCceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEE
Q 016070 104 RSDRMSKRDEILLDAVSLGV----DF-RNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWI 178 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WI 178 (396)
+++...+++++++++++... +. +.+.-..| ..+...+++||||||||.|++|++|||||||||+||| |||||
T Consensus 45 ~~~~~~~~~gir~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~iivVTPTY~R~~q~~~LtRlanTL~~V~-nLhWI 121 (330)
T KOG1476|consen 45 SSPRVVGRHGIRIRPWATAPAIAVEKVAETRSRTQ--KEPEMQLPTIIVVTPTYVRPVQAAELTRLANTLRLVP-NLHWI 121 (330)
T ss_pred cceeeeccccccccccCCCchhhhhhhccccccCC--cccccCCccEEEEcccccchhHHHHHHHHHHHHhhcC-CeeEE
Confidence 45678899999998886332 22 11111211 2222238999999999999999999999999999998 99999
Q ss_pred EEecC-CCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHH-----hhCCCeEEEEecCCCcchhhhhHh
Q 016070 179 VVEEN-AASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIE-----RHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 179 VVEd~-~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir-----~~~l~GVVyFADDDNtYdl~LFde 252 (396)
||||+ ..+++|+++|++|||+|+||+++++++....||++|||.||+||| +|+++||||||||||+|||+||+|
T Consensus 122 VVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 122 VVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMGYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred EEecCCCCCHHHHHHHHHcCCceEEEeccCCCCCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 99998 568999999999999999999999988888899999999999999 789999999999999999999999
Q ss_pred hhcccccceeEeeEeeccCcceeEecceeeCCeeeEEEcCCCCCCCcccccccceeeeeeccccCCc-CCCCCCCccccc
Q 016070 253 LREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPK-RWQRPFSNSIRQ 331 (396)
Q Consensus 253 mR~ir~vGvWPVGlvg~~~~~~~vEGPvc~~~kVvGW~t~~~~~~~R~fpiDMAGFA~Ns~lLwdp~-r~~rP~s~~~~~ 331 (396)
||+||+||+||||++|+ +.||||+|++|||+|||+.|.+ .|+|||||||||||+++||+++ .|-+ .
T Consensus 202 iR~v~~~gvWpVg~vgg----~~vE~P~v~~~kvvg~~~~w~~--~r~f~vdmaGFAvNl~lll~~~~a~f~-------~ 268 (330)
T KOG1476|consen 202 IRNVKKFGVWPVGLVGG----ARVEGPVVNNGKVVGWHTRWEP--ERPFAVDMAGFAVNLKLLLDPSNAVFK-------P 268 (330)
T ss_pred HhccceeeeEeeeecCC----eeeecceeccCeeEEEEecccc--CCCCccchhhheehhhhhccCcccccc-------c
Confidence 99999999999999885 8999999999999999999965 5999999999999999999854 3433 3
Q ss_pred cccccCCcchhhHHHhhccCCCceeccCCCCCEEEEEeccCCCCCC
Q 016070 332 LDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNL 377 (396)
Q Consensus 332 ~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~kVLVWHtrte~~~~ 377 (396)
....++||||++||+||+.|.++|||+|+||++|||||||||++..
T Consensus 269 ~~~~~~G~~E~~~l~~l~~d~~~iEp~~~~c~kILvWhtrte~~~~ 314 (330)
T KOG1476|consen 269 LCPRGEGYQETCLLEQLGLDLSDIEPLAYECTKILVWHTRTEKPAD 314 (330)
T ss_pred cCcCCCCCcchhHHHHhcCCHHHccccccccceEEEEEecccCccc
Confidence 3456789999999999999999999999999999999999999953
No 4
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=100.00 E-value=3.5e-81 Score=585.23 Aligned_cols=198 Identities=46% Similarity=0.854 Sum_probs=149.0
Q ss_pred HhhhhcCCCCCeeEEEEecCCCC-HHHHHHHHhcCCceeEeeecCC-----CCCCCCcchhHHHHHHHHHH---hhCCCe
Q 016070 164 LAQVLRLVQPPLLWIVVEENAAS-YETAELLRKTGVMYRQLVSQKN-----SSSVKDRGVHQRNLALEHIE---RHRLDG 234 (396)
Q Consensus 164 La~TL~lVp~~L~WIVVEd~~~s-~~va~lL~~sGl~y~HL~~~~~-----~~~~~~rg~~QRN~AL~~Ir---~~~l~G 234 (396)
||||||||| +||||||||++.+ +.|+++|++|||+|+||+++++ ....++||++|||.||+||| +++++|
T Consensus 1 La~TL~~V~-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~G 79 (207)
T PF03360_consen 1 LAHTLRHVP-PLHWIVVEDSEETTPLVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDG 79 (207)
T ss_dssp HHHHHTTSS-SEEEEEEESSSS--HHHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-E
T ss_pred CchhhhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCc
Confidence 799999998 9999999999875 5599999999999999999983 44567999999999999999 889999
Q ss_pred EEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceeeCCeeeEEEcCCCCCCCcccccccceeeeeecc
Q 016070 235 IVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTI 314 (396)
Q Consensus 235 VVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~~~kVvGW~t~~~~~~~R~fpiDMAGFA~Ns~l 314 (396)
|||||||||+||+|||||||+||+||+||||++|+ +.+|||+|++++|+|||+.|.++ |+|||||||||||+++
T Consensus 80 VVyFaDDdNtYdl~LF~emR~~k~vgvWPVG~vg~----~~~EgP~~~~~~Vvgw~~~~~~~--R~fpiDmAGFAvn~~l 153 (207)
T PF03360_consen 80 VVYFADDDNTYDLRLFDEMRKTKRVGVWPVGLVGG----LRVEGPVCNNGKVVGWHTSWKPD--RPFPIDMAGFAVNSRL 153 (207)
T ss_dssp EEEE--TTSEE-HHHHHHHCT-SSEEE--EEEETT----EEEEEEEEETTEEEEEE-SSSTT--STT---GGGEEEEHHH
T ss_pred EEEECCCCCeeeHHHHHHHHhhhcccceeeceecc----ceeeccEEeCCEEEEEEcccCCC--CCccccceeeeeehHH
Confidence 99999999999999999999999999999999985 89999999999999999999764 9999999999999999
Q ss_pred ccCCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCEEEEEeccCCC
Q 016070 315 LWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDA 374 (396)
Q Consensus 315 Lwdp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~kVLVWHtrte~ 374 (396)
||+..+|..+... . ..+||||++||++|+.|+++|||+|+||++|||||||||+
T Consensus 154 l~~~~~~~~~~~~-----~-~~~G~~Es~fL~~l~~~~~~lEp~a~~c~~VlVWHtrtek 207 (207)
T PF03360_consen 154 LWDRPEAIFDYSA-----P-RGEGYQESSFLSQLVLDREDLEPLADNCSKVLVWHTRTEK 207 (207)
T ss_dssp HHHSTT----TTS-----S-TT-TGHHHHHHHTT---GGGEEE-HHHHTS--EE---B--
T ss_pred HhcCccccccccC-----C-CCCCcchhHHHHHhccChhhcccccCCCCEEEEeeeeccC
Confidence 9986665443211 0 1149999999999999999999999999999999999996
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.87 E-value=2.8e-05 Score=64.66 Aligned_cols=94 Identities=31% Similarity=0.453 Sum_probs=65.0
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCC-CCCeeEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCCcchhHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLV-QPPLLWIVVEENAASYETAELLRKT---GVMYRQLVSQKNSSSVKDRGVHQRNL 222 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lV-p~~L~WIVVEd~~~s~~va~lL~~s---Gl~y~HL~~~~~~~~~~~rg~~QRN~ 222 (396)
||+|||.+ .-+|.++-++|+.- .++.-+|||+|++ ++++.++|++. +..++.+..+.|. ..-.++|.
T Consensus 2 vvip~~n~---~~~l~~~l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-----g~~~~~n~ 72 (169)
T PF00535_consen 2 VVIPTYNE---AEYLERTLESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-----GFSAARNR 72 (169)
T ss_dssp EEEEESS----TTTHHHHHHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-----HHHHHHHH
T ss_pred EEEEeeCC---HHHHHHHHHHHhhccCCCEEEEEecccc-ccccccccccccccccccccccccccc-----cccccccc
Confidence 79999999 33566666666554 3589999999988 55566666654 6677777665432 23578999
Q ss_pred HHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 223 ALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 223 AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
|+++.... .|.|.|||..+....++++
T Consensus 73 ~~~~a~~~----~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 73 GIKHAKGE----YILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp HHHH--SS----EEEEEETTEEE-TTHHHHH
T ss_pred ccccccee----EEEEeCCCceEcHHHHHHH
Confidence 99997654 9999999999998876663
No 6
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.66 E-value=0.015 Score=51.69 Aligned_cols=99 Identities=24% Similarity=0.232 Sum_probs=64.0
Q ss_pred EEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCCCHHHHHHHHhcCCce--eEeeecCCCCCCCCcc-hhHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAASYETAELLRKTGVMY--RQLVSQKNSSSVKDRG-VHQRNL 222 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~s~~va~lL~~sGl~y--~HL~~~~~~~~~~~rg-~~QRN~ 222 (396)
||+|||.+... |.++-++|.. -.++.-.|||+|+++ ..|.+++++.+-.+ +++..++| .| ...+|.
T Consensus 1 viI~~~n~~~~---l~~~l~sl~~q~~~~~eiiivD~~s~-d~t~~~~~~~~~~~~i~~~~~~~n------~g~~~~~n~ 70 (202)
T cd04185 1 AVVVTYNRLDL---LKECLDALLAQTRPPDHIIVIDNAST-DGTAEWLTSLGDLDNIVYLRLPEN------LGGAGGFYE 70 (202)
T ss_pred CEEEeeCCHHH---HHHHHHHHHhccCCCceEEEEECCCC-cchHHHHHHhcCCCceEEEECccc------cchhhHHHH
Confidence 68899998754 3443333332 223567899988754 34566666655543 44444332 34 356899
Q ss_pred HHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 223 ALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 223 AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
|+++.. ....-.|.|.|+|..++-+.++++-+.
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 998876 222337888899999999999986543
No 7
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.45 E-value=0.046 Score=48.16 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=61.6
Q ss_pred ceEEEEcccCCch-hhhHHHHHHhhhhc-CCCCCeeEEEEecCCCCHHHHHHHHh---cCCceeEeeecCCCCCCCCcc-
Q 016070 143 KQLIVITPTYNRA-MQAYFLNRLAQVLR-LVQPPLLWIVVEENAASYETAELLRK---TGVMYRQLVSQKNSSSVKDRG- 216 (396)
Q Consensus 143 ~~IivVTPTy~R~-~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~s~~va~lL~~---sGl~y~HL~~~~~~~~~~~rg- 216 (396)
+.+-||.|||.+. .+ |.+.-+.|. +..+++..|||+|++....+..+++. ..-..+.+..+ ...|
T Consensus 1 p~vsiii~~~n~~~~~---l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~------~~~g~ 71 (202)
T cd04184 1 PLISIVMPVYNTPEKY---LREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE------ENGGI 71 (202)
T ss_pred CeEEEEEecccCcHHH---HHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc------cCCCH
Confidence 3588999999987 33 333333332 22247899999998765444444442 21112222111 1234
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
...||.|+++.+ .=.|.|.|+|..++.+.++++.
T Consensus 72 ~~a~n~g~~~a~----~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 72 SAATNSALELAT----GEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred HHHHHHHHHhhc----CCEEEEECCCCcCChHHHHHHH
Confidence 478999998753 2478899999999999888754
No 8
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.38 E-value=0.025 Score=49.85 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=57.2
Q ss_pred EEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCCCHHHHHHHHhcCCce---eEeeecCCCCCCCCcc-hhHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAASYETAELLRKTGVMY---RQLVSQKNSSSVKDRG-VHQRN 221 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~s~~va~lL~~sGl~y---~HL~~~~~~~~~~~rg-~~QRN 221 (396)
||.|||.+... |.+.-+.|.. -.+++-+|||+|+++- .|.+++++..-.+ .++.... ...| ...+|
T Consensus 2 IvIp~yn~~~~---l~~~l~sl~~q~~~~~eiiVvddgS~d-~t~~~~~~~~~~~~~~~~~~~~~-----~~~G~~~~~n 72 (214)
T cd04196 2 VLMATYNGEKY---LREQLDSILAQTYKNDELIISDDGSTD-GTVEIIKEYIDKDPFIIILIRNG-----KNLGVARNFE 72 (214)
T ss_pred EEEEecCcHHH---HHHHHHHHHhCcCCCeEEEEEeCCCCC-CcHHHHHHHHhcCCceEEEEeCC-----CCccHHHHHH
Confidence 78999999833 3343333332 2237999999997642 2444444433322 2221111 1223 35677
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 222 LALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 222 ~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
.|++.. ..=+|.|.|+|..++.+.+.+|-+.
T Consensus 73 ~g~~~~----~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 73 SLLQAA----DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHhC----CCCEEEEECCCcccChhHHHHHHHH
Confidence 786542 2347889999999999888876553
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.31 E-value=0.046 Score=49.15 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=64.3
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhhcCCC-CC--eeEEEEecCCCCHHHHHHHHhcCCce--eEeeecCCCCCCCCcch
Q 016070 143 KQLIVITPTYNRAMQAYFLNRLAQVLRLVQ-PP--LLWIVVEENAASYETAELLRKTGVMY--RQLVSQKNSSSVKDRGV 217 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp-~~--L~WIVVEd~~~s~~va~lL~~sGl~y--~HL~~~~~~~~~~~rg~ 217 (396)
|.|-||.|||.+.. ..|.+.-+.|..-. ++ +..|||+|++ +..+.+++++-+..+ ..+....+. .-..
T Consensus 1 p~vsviip~~n~~~--~~l~~~l~sl~~q~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~~~~~~~~----~~~~ 73 (234)
T cd06421 1 PTVDVFIPTYNEPL--EIVRKTLRAALAIDYPHDKLRVYVLDDGR-RPELRALAAELGVEYGYRYLTRPDNR----HAKA 73 (234)
T ss_pred CceEEEEecCCCcH--HHHHHHHHHHHhcCCCcccEEEEEEcCCC-chhHHHHHHHhhcccCceEEEeCCCC----CCcH
Confidence 35889999999742 12334334443322 34 7899998874 567888888776643 222222111 1123
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.++|.|++.. ..=+|.|.|+|...+.+.+++|-
T Consensus 74 ~~~n~~~~~a----~~d~i~~lD~D~~~~~~~l~~l~ 106 (234)
T cd06421 74 GNLNNALAHT----TGDFVAILDADHVPTPDFLRRTL 106 (234)
T ss_pred HHHHHHHHhC----CCCEEEEEccccCcCccHHHHHH
Confidence 5689999875 23489999999999988888754
No 10
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.27 E-value=0.045 Score=45.08 Aligned_cols=94 Identities=30% Similarity=0.427 Sum_probs=58.1
Q ss_pred EEcccCCchhhhHHHHHHhhhh-cCCCCCeeEEEEecCCCCHHHHHHHHhcCCc---eeEeeecCCCCCCCCcc-hhHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVL-RLVQPPLLWIVVEENAASYETAELLRKTGVM---YRQLVSQKNSSSVKDRG-VHQRN 221 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL-~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~---y~HL~~~~~~~~~~~rg-~~QRN 221 (396)
||.|||.++.+ |.++-.+| ++..++.--|||.|++. ..+.+++++..-. ..++.... +..| ..+||
T Consensus 1 Viip~~n~~~~---l~~~l~sl~~q~~~~~~iivvdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAV---IERTIESLLALDYPKLEVIVVDDGST-DDTLEILEELAALYIRRVLVVRDK-----ENGGKAGALN 71 (180)
T ss_pred CeecccChHHH---HHHHHHHHHhCCCCceEEEEEeCCCc-cchHHHHHHHhccccceEEEEEec-----ccCCchHHHH
Confidence 57789999833 33333333 23324678888988764 3344444443332 12222211 1223 47899
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 222 LALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 222 ~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
.|++.. ..-+|.|.|+|..+.-..+++|
T Consensus 72 ~~~~~~----~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 72 AGLRHA----KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred HHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 999987 3457899999999999999988
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.14 E-value=0.03 Score=48.39 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=54.4
Q ss_pred EEcccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRNLAL 224 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN~AL 224 (396)
||+|||.+... |.+.-..|. +--+++-.|||+|++. +.+.++|++-+-...++...++ .| ...||.||
T Consensus 2 ivi~~~n~~~~---l~~~l~sl~~q~~~~~evivvDd~s~-d~~~~~~~~~~~~~~~~~~~~~------~g~~~a~n~~~ 71 (202)
T cd06433 2 IITPTYNQAET---LEETIDSVLSQTYPNIEYIVIDGGST-DGTVDIIKKYEDKITYWISEPD------KGIYDAMNKGI 71 (202)
T ss_pred EEEeccchHHH---HHHHHHHHHhCCCCCceEEEEeCCCC-ccHHHHHHHhHhhcEEEEecCC------cCHHHHHHHHH
Confidence 68899998632 333222221 2223688899988764 3344555543332222222222 23 47899999
Q ss_pred HHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 225 EHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 225 ~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
++.+ .-+|.|.|+|..++.+-..++
T Consensus 72 ~~a~----~~~v~~ld~D~~~~~~~~~~~ 96 (202)
T cd06433 72 ALAT----GDIIGFLNSDDTLLPGALLAV 96 (202)
T ss_pred HHcC----CCEEEEeCCCcccCchHHHHH
Confidence 8753 347889999888876655553
No 12
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=96.08 E-value=0.076 Score=49.46 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=63.9
Q ss_pred CceEEEEcccCCchhhhHHHH-HHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhc----CCceeEeeecCCCCCCCCcc
Q 016070 142 RKQLIVITPTYNRAMQAYFLN-RLAQVLRLVQPPLLWIVVEENAASYETAELLRKT----GVMYRQLVSQKNSSSVKDRG 216 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~Lt-RLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~s----Gl~y~HL~~~~~~~~~~~rg 216 (396)
.+.|-||.|||........+. .+.+.+...+ ++-+|||+|++. ..|.+++++. +....++... ....|
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~-D~t~~i~~~~~~~~~~~~v~~~~~-----~~n~G 80 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSP-DGTQDVVKQLQKVYGEDRILLRPR-----PGKLG 80 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCC-CCHHHHHHHHHHhcCCCcEEEEec-----CCCCC
Confidence 457999999998876655433 4445555444 799999999763 2334444432 2222222221 11234
Q ss_pred h-hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 217 V-HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~-~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
. ..+|.|++.. ..-+|.|.|.|..++.+.+++|-
T Consensus 81 ~~~a~n~g~~~a----~g~~i~~lD~D~~~~~~~l~~l~ 115 (243)
T PLN02726 81 LGTAYIHGLKHA----SGDFVVIMDADLSHHPKYLPSFI 115 (243)
T ss_pred HHHHHHHHHHHc----CCCEEEEEcCCCCCCHHHHHHHH
Confidence 3 4678888764 23488999999999999888743
No 13
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.04 E-value=0.034 Score=49.73 Aligned_cols=91 Identities=25% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEcccCCchhhhHH-HHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHH
Q 016070 146 IVITPTYNRAMQAYF-LNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLAL 224 (396)
Q Consensus 146 ivVTPTy~R~~Q~a~-LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL 224 (396)
-||.|||.++....+ |..|.+ +..+++-.|||+|+. ++.+.+++++.+ .+++..+. + .-..+|.|+
T Consensus 2 svii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s-~d~~~~~~~~~~--~~~~~~~~---g----~~~a~n~g~ 68 (221)
T cd02522 2 SIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGS-TDGTVAIARSAG--VVVISSPK---G----RARQMNAGA 68 (221)
T ss_pred EEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCC-CccHHHHHhcCC--eEEEeCCc---C----HHHHHHHHH
Confidence 478899998654332 333332 222477888998766 455667777733 33332211 1 136789999
Q ss_pred HHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 225 EHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 225 ~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
+..+ .-+|.|.|+|..++.+.+++|
T Consensus 69 ~~a~----~~~i~~~D~D~~~~~~~l~~l 93 (221)
T cd02522 69 AAAR----GDWLLFLHADTRLPPDWDAAI 93 (221)
T ss_pred Hhcc----CCEEEEEcCCCCCChhHHHHH
Confidence 8754 469999999999999999986
No 14
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.00 E-value=0.068 Score=47.17 Aligned_cols=96 Identities=23% Similarity=0.286 Sum_probs=62.2
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCCcc-hhHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAASYETAELLRKTG--VMYRQLVSQKNSSSVKDRG-VHQRNL 222 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~s~~va~lL~~sG--l~y~HL~~~~~~~~~~~rg-~~QRN~ 222 (396)
||.|||.+. ....|.+.-++|..-. ++.-+|||.|++.++.+.+++++.. .+.+++..+.| .| ...||.
T Consensus 2 viip~~n~~-~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n------~G~~~a~N~ 74 (201)
T cd04195 2 VLMSVYIKE-KPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN------RGLGKALNE 74 (201)
T ss_pred EEEEccccc-hHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc------ccHHHHHHH
Confidence 678999865 2234555555554322 2577899999887777777666431 22444433332 34 467999
Q ss_pred HHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 223 ALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 223 AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
|++.- ..-.|.|.|+|..+....+++|
T Consensus 75 g~~~a----~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 75 GLKHC----TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred HHHhc----CCCEEEEeCCccccCcHHHHHH
Confidence 99863 2348999999999998887764
No 15
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.91 E-value=0.03 Score=51.91 Aligned_cols=93 Identities=28% Similarity=0.251 Sum_probs=65.0
Q ss_pred EEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHHHH
Q 016070 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRNLA 223 (396)
Q Consensus 145 IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN~A 223 (396)
|-||.|||.... .|.+.-++|.... -.-|||+|++ ++.|.+++++.|+...|. . ..| -.+||.|
T Consensus 2 isvii~~~Ne~~---~l~~~l~sl~~~~--~eiivvD~gS-tD~t~~i~~~~~~~v~~~---~------~~g~~~~~n~~ 66 (229)
T cd02511 2 LSVVIITKNEER---NIERCLESVKWAV--DEIIVVDSGS-TDRTVEIAKEYGAKVYQR---W------WDGFGAQRNFA 66 (229)
T ss_pred EEEEEEeCCcHH---HHHHHHHHHhccc--CEEEEEeCCC-CccHHHHHHHcCCEEEEC---C------CCChHHHHHHH
Confidence 678999998753 3444444444331 2567777765 345778888888876665 1 123 4799999
Q ss_pred HHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 224 LEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 224 L~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
++..+. + .|.|.|.|..++.++.++|.+.
T Consensus 67 ~~~a~~---d-~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 67 LELATN---D-WVLSLDADERLTPELADEILAL 95 (229)
T ss_pred HHhCCC---C-EEEEEeCCcCcCHHHHHHHHHH
Confidence 987532 2 8899999999999999987653
No 16
>PRK10018 putative glycosyl transferase; Provisional
Probab=95.83 E-value=0.14 Score=50.23 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=63.9
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHH-HHHHHHhcCC-ceeEeeecCCCCCCCCcch-
Q 016070 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYE-TAELLRKTGV-MYRQLVSQKNSSSVKDRGV- 217 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~-va~lL~~sGl-~y~HL~~~~~~~~~~~rg~- 217 (396)
..|+|-||+|||.+..-.. .-|...|.+--+++-+|||+|++.+.+ +.+++++.+- ..+++..+ ...|.
T Consensus 3 ~~p~VSVIip~yN~~~~l~--~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~------~n~G~~ 74 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAI--RAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND------INSGAC 74 (279)
T ss_pred CCCEEEEEEEeCCCHHHHH--HHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC------CCCCHH
Confidence 3578999999999865322 112222333234799999999887643 5566655332 22222221 23454
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFde 252 (396)
..||.|++.. ..-.|.|.|+|..+..+.+++
T Consensus 75 ~a~N~gi~~a----~g~~I~~lDaDD~~~p~~l~~ 105 (279)
T PRK10018 75 AVRNQAIMLA----QGEYITGIDDDDEWTPNRLSV 105 (279)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCCccHHHH
Confidence 5699999863 345889999999999887665
No 17
>PRK10063 putative glycosyl transferase; Provisional
Probab=95.66 E-value=0.1 Score=49.92 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred ceEEEEcccCCchhhhH-HHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCC--ceeEeeecCCCCCCCCcch-h
Q 016070 143 KQLIVITPTYNRAMQAY-FLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGV--MYRQLVSQKNSSSVKDRGV-H 218 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a-~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl--~y~HL~~~~~~~~~~~rg~-~ 218 (396)
++|-||+|||....... -|..+.+....-..++-+|||+|++ +..|.+++++.+- ..+++. .. ..|. .
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgS-tD~t~~i~~~~~~~~~i~~i~-~~------~~G~~~ 72 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGS-NDGTREFLENLNGIFNLRFVS-EP------DNGIYD 72 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcC-cccHHHHHHHhcccCCEEEEE-CC------CCCHHH
Confidence 35789999998754332 2223322222222378899999976 4456667776542 222332 11 2353 5
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 219 QRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 219 QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
.+|.|++.-+ .=+|.|.|.|..+..+.++.+++.
T Consensus 73 A~N~Gi~~a~----g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 73 AMNKGIAMAQ----GRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHHHHHcC----CCEEEEEeCCcccCcCHHHHHHHH
Confidence 7999998742 237889997666655554444433
No 18
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.65 E-value=0.11 Score=46.34 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=59.3
Q ss_pred EEcccCCchhhhHHHHHHhhhhc-CCCCC--eeEEEEecCCC--CHHHHH-HHHhcCCceeEeeecCCCCCCCCcc-hhH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLR-LVQPP--LLWIVVEENAA--SYETAE-LLRKTGVMYRQLVSQKNSSSVKDRG-VHQ 219 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~-lVp~~--L~WIVVEd~~~--s~~va~-lL~~sGl~y~HL~~~~~~~~~~~rg-~~Q 219 (396)
||.|||.+... |.+.-+.|. +--++ +..|||.|++. +.++.+ .+...+..++++.... ....| ...
T Consensus 1 viip~~n~~~~---l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~----~~~~g~~~a 73 (229)
T cd04192 1 VVIAARNEAEN---LPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR----VSISGKKNA 73 (229)
T ss_pred CEEEecCcHHH---HHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC----cccchhHHH
Confidence 68899988644 333333332 22234 78899998753 334333 3334455666664432 11122 245
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 220 RNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
+|.|++.. ..-+|.|.|+|..++.+.+++|-.
T Consensus 74 ~n~g~~~~----~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 74 LTTAIKAA----KGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HHHHHHHh----cCCEEEEECCCcccCHHHHHHHHH
Confidence 67776653 456999999999999999998654
No 19
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=95.62 E-value=0.11 Score=45.36 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=61.3
Q ss_pred EEcccCCchhhhHH-HHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHHH
Q 016070 147 VITPTYNRAMQAYF-LNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRNL 222 (396)
Q Consensus 147 vVTPTy~R~~Q~a~-LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN~ 222 (396)
||.|||.+..+... |..|...+.+...++.=|||.|++. +.++++-+....-..+.+...+| .| ...+|.
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n------~G~~~a~n~ 74 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRN------FGQQAALLA 74 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCC------CCcHHHHHH
Confidence 58899999877654 3445544544333566677877654 33444433332223444433332 22 467888
Q ss_pred HHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 223 ALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 223 AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
|+++.. .-+|.|.|+|..++.+..++|-+
T Consensus 75 g~~~a~----~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 75 GLDHAR----GDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred HHHhcC----CCEEEEEeCCCCCCHHHHHHHHH
Confidence 888753 35888999999999998888644
No 20
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.56 E-value=0.089 Score=44.11 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=61.0
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRNLAL 224 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN~AL 224 (396)
||.|||.|+ ..|.++-++|.... ++.--|||.|++.. .+.+.+++..-..+.+..+ ...| ...||.|+
T Consensus 1 vii~~~~~~---~~l~~~l~sl~~~~~~~~~iiivdd~s~~-~~~~~~~~~~~~~~~~~~~------~~~g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSL---EYLKACLDSLLAQTYPDFEVIVVDNASTD-GSVELLRELFPEVRLIRNG------ENLGFGAGNNQGI 70 (166)
T ss_pred CEEEecCCH---HHHHHHHHHHHhccCCCeEEEEEECCCCc-hHHHHHHHhCCCeEEEecC------CCcChHHHhhHHH
Confidence 578999883 33555555554432 36777888887653 3444454443222222211 1233 46899999
Q ss_pred HHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 225 EHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 225 ~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
++. ...+|.|.|||..++.+.+++|-+
T Consensus 71 ~~~----~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 71 REA----KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred hhC----CCCEEEEECCCcEECccHHHHHHH
Confidence 987 456899999999999998888654
No 21
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=95.48 E-value=0.16 Score=46.27 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=64.7
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCCCH----HHHHHHHhcCCceeEeeecCCCCCCCCcchhHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAASY----ETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRN 221 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~s~----~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN 221 (396)
||.|||.... ..|.++-.+|.... +++-.|||+|+.... .+.+++++.+..++.+....+. .. ....+|
T Consensus 2 iiip~~ne~~--~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~-G~---~~~a~n 75 (236)
T cd06435 2 IHVPCYEEPP--EMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLP-GA---KAGALN 75 (236)
T ss_pred eeEeeCCCcH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCC-CC---chHHHH
Confidence 6889998762 23445445554432 367789999876422 3567777777665554333221 11 246799
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 222 LALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 222 ~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.|++.... ..-+|.|.|+|..++.+.+++|-
T Consensus 76 ~g~~~a~~--~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 76 YALERTAP--DAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred HHHHhcCC--CCCEEEEEcCCCCcCHHHHHHHH
Confidence 99998532 12389999999999999988863
No 22
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=0.14 Score=41.15 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=55.8
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcc-h
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRG-V 217 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~ 217 (396)
.+.|=||.|||.+. ..|.+.-..+.. -..+.-.|||+|+++ |.++++-+........+...+.| .| .
T Consensus 2 ~~~~siiip~~n~~---~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~------~g~~ 72 (291)
T COG0463 2 MPKVSVVIPTYNEE---EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERN------GGLG 72 (291)
T ss_pred CccEEEEEeccchh---hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccC------CChH
Confidence 45688999999987 233333222222 112346788899764 45555444433322222222222 23 4
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFde 252 (396)
..||.|+.+... -.|.|.|.|+. ....+..
T Consensus 73 ~~~~~~~~~~~~----~~~~~~d~d~~-~~~~~~~ 102 (291)
T COG0463 73 AARNAGLEYARG----DYIVFLDADDQ-HPPELIP 102 (291)
T ss_pred HHHHhhHHhccC----CEEEEEccCCC-CCHHHHH
Confidence 789999988655 56788888888 6555555
No 23
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=95.34 E-value=0.14 Score=46.03 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=61.3
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHH-hcCCceeEeeecCCCCCCCCcc-hhHHHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLR-KTGVMYRQLVSQKNSSSVKDRG-VHQRNLAL 224 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~-~sGl~y~HL~~~~~~~~~~~rg-~~QRN~AL 224 (396)
||.|||.... .|.++-++|....+++--|||.|++. ..|.++++ ..+-.-.++.-.. .....+| -..+|.|+
T Consensus 1 ViIp~~Ne~~---~l~~~l~sl~~~~~~~eIivvdd~S~-D~t~~~~~~~~~~~~v~~i~~~--~~~~~~Gk~~aln~g~ 74 (191)
T cd06436 1 VLVPCLNEEA---VIQRTLASLLRNKPNFLVLVIDDASD-DDTAGIVRLAITDSRVHLLRRH--LPNARTGKGDALNAAY 74 (191)
T ss_pred CEEeccccHH---HHHHHHHHHHhCCCCeEEEEEECCCC-cCHHHHHhheecCCcEEEEecc--CCcCCCCHHHHHHHHH
Confidence 5789998753 45555555544334788889988763 33444444 2111111111110 0011234 47899999
Q ss_pred HHHHhhC-C-----Ce-EEEEecCCCcchhhhhHhhhc
Q 016070 225 EHIERHR-L-----DG-IVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 225 ~~Ir~~~-l-----~G-VVyFADDDNtYdl~LFdemR~ 255 (396)
+.++... . ++ +|.|.|.|..++...++.+..
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~ 112 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAP 112 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHH
Confidence 9987531 1 22 889999999999999988654
No 24
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.18 E-value=0.22 Score=39.88 Aligned_cols=95 Identities=23% Similarity=0.317 Sum_probs=55.4
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCCcchhHHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAASYETAELLRKTG--VMYRQLVSQKNSSSVKDRGVHQRNLA 223 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~s~~va~lL~~sG--l~y~HL~~~~~~~~~~~rg~~QRN~A 223 (396)
||.|||.+. ..|.....++..-. ++...+++.++........+.+... .....+....+ ......+|.|
T Consensus 1 iii~~~~~~---~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEE---PYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEEN-----QGLAAARNAG 72 (156)
T ss_pred CEEeecCcH---HHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCC-----CChHHHHHHH
Confidence 477888882 33334444443332 3688888888764322222222211 12222211111 1224789999
Q ss_pred HHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 224 LEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 224 L~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
+++. ...+|.|.|+|+.++.+.++.+
T Consensus 73 ~~~~----~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 73 LKAA----RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHh----cCCEEEEECCCCccCccHHHHH
Confidence 9887 4678999999999999998875
No 25
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.80 E-value=0.26 Score=44.47 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=57.0
Q ss_pred EEEEcccCCchhhhHHHHHHhhhhcCCC---CCeeEEEEecCCCCHHHHHHHHhcCC--ceeEeeecCCCCCCCCcchhH
Q 016070 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQ---PPLLWIVVEENAASYETAELLRKTGV--MYRQLVSQKNSSSVKDRGVHQ 219 (396)
Q Consensus 145 IivVTPTy~R~~Q~a~LtRLa~TL~lVp---~~L~WIVVEd~~~s~~va~lL~~sGl--~y~HL~~~~~~~~~~~rg~~Q 219 (396)
+-||.|||.++.. |.++-++|+.-. .+.-=|||++++. ..+.+++++.+- +..++....+ . -.-..
T Consensus 2 ~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~--~---~~~~a 72 (249)
T cd02525 2 VSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPK--R---IQSAG 72 (249)
T ss_pred EEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCC--C---CchHH
Confidence 6789999998643 444444443221 2344456777643 344555554332 2233322221 1 12357
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 220 RNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
+|.|+++. ..-+|.|.|+|..++...+++|-
T Consensus 73 ~N~g~~~a----~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 73 LNIGIRNS----RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred HHHHHHHh----CCCEEEEECCCccCCHHHHHHHH
Confidence 99999886 23478999999999999888765
No 26
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=94.80 E-value=0.28 Score=44.44 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=55.3
Q ss_pred EEcccCCchhhhHHHHHHhhhhcC--CCCCeeEEEEecCCCCHHHHHHHHhc-------CCceeEeeecCCCCCCCCcch
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRL--VQPPLLWIVVEENAASYETAELLRKT-------GVMYRQLVSQKNSSSVKDRGV 217 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~l--Vp~~L~WIVVEd~~~s~~va~lL~~s-------Gl~y~HL~~~~~~~~~~~rg~ 217 (396)
||.|||.+.. .|.++-++|.. .++++-.|||+|++. ..+.+++++. ++.+.++. . ......|.
T Consensus 1 ViIp~yn~~~---~l~~~l~sl~~q~~~~~~eiiVvDd~S~-d~t~~i~~~~~~~~~~~~~~~~~~~--~--~~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQ---WLDECLESVLQQDFEGTLELSVFNDAST-DKSAEIIEKWRKKLEDSGVIVLVGS--H--NSPSPKGV 72 (219)
T ss_pred CEEeecCcHH---HHHHHHHHHHhCCCCCCEEEEEEeCCCC-ccHHHHHHHHHHhCcccCeEEEEec--c--cCCCCccH
Confidence 5889999864 44444444433 232578899999763 2233444431 22222221 1 11233465
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHh
Q 016070 218 -HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 218 -~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFde 252 (396)
..||.|++.. ..=+|.|.|+|..++.+-+++
T Consensus 73 ~~a~N~g~~~a----~gd~i~~lD~D~~~~~~~l~~ 104 (219)
T cd06913 73 GYAKNQAIAQS----SGRYLCFLDSDDVMMPQRIRL 104 (219)
T ss_pred HHHHHHHHHhc----CCCEEEEECCCccCChhHHHH
Confidence 6899998753 223899999999998876654
No 27
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.62 E-value=0.49 Score=42.80 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=56.5
Q ss_pred EEEEcccCCch-hhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHH-hcC-CceeEeeecCCCCCCCCcc-hhHH
Q 016070 145 LIVITPTYNRA-MQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLR-KTG-VMYRQLVSQKNSSSVKDRG-VHQR 220 (396)
Q Consensus 145 IivVTPTy~R~-~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~-~sG-l~y~HL~~~~~~~~~~~rg-~~QR 220 (396)
|-||+|||.+. .. |.+.-+.|..-. +.-.|||.|++.. ++.++|. ... ....++ ...+ .| ...+
T Consensus 2 isVvIp~~ne~~~~---l~~~l~sl~~q~-~~eiivvdd~s~d-~~~~~l~~~~~~~~~~v~-~~~~------~g~~~a~ 69 (235)
T cd06434 2 VTVIIPVYDEDPDV---FRECLRSILRQK-PLEIIVVTDGDDE-PYLSILSQTVKYGGIFVI-TVPH------PGKRRAL 69 (235)
T ss_pred eEEEEeecCCChHH---HHHHHHHHHhCC-CCEEEEEeCCCCh-HHHHHHHhhccCCcEEEE-ecCC------CChHHHH
Confidence 56899999876 33 333333333222 5778999887653 4444431 111 111222 1111 12 3567
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 221 NLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 221 N~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
|.||++. ..=+|.|.|+|..++.+.+++|-+
T Consensus 70 n~g~~~a----~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 70 AEGIRHV----TTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred HHHHHHh----CCCEEEEECCCceeChhHHHHHHH
Confidence 8888765 345999999999999998887653
No 28
>PRK10073 putative glycosyl transferase; Provisional
Probab=94.41 E-value=0.52 Score=47.02 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=63.9
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcc-h
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRG-V 217 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~ 217 (396)
.+.|-||.|+|.+. .+|.+.-++|.. --+++-.|||+|+++ |.++.+-+....-..+.+ ..+| .| .
T Consensus 5 ~p~vSVIIP~yN~~---~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi-~~~n------~G~~ 74 (328)
T PRK10073 5 TPKLSIIIPLYNAG---KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLL-HQAN------AGVS 74 (328)
T ss_pred CCeEEEEEeccCCH---HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE-ECCC------CChH
Confidence 46799999999986 355555444432 224789999999864 344444333221122222 2222 34 3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
..||.||+.. ..-.|.|.|+|..++.+.+++|-.
T Consensus 75 ~arN~gl~~a----~g~yi~flD~DD~~~p~~l~~l~~ 108 (328)
T PRK10073 75 VARNTGLAVA----TGKYVAFPDADDVVYPTMYETLMT 108 (328)
T ss_pred HHHHHHHHhC----CCCEEEEECCCCccChhHHHHHHH
Confidence 6799999874 234899999999999998887543
No 29
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=94.35 E-value=0.66 Score=42.92 Aligned_cols=100 Identities=20% Similarity=0.149 Sum_probs=62.0
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhhcCCCC---CeeEEEEecCCCCHHHHHHHHhcCCc-eeEeeecCCCCCCCCcc-h
Q 016070 143 KQLIVITPTYNRAMQAYFLNRLAQVLRLVQP---PLLWIVVEENAASYETAELLRKTGVM-YRQLVSQKNSSSVKDRG-V 217 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~---~L~WIVVEd~~~s~~va~lL~~sGl~-y~HL~~~~~~~~~~~rg-~ 217 (396)
|.|-||.|||..... |.++-+.|....+ .+-=|||.|++ ++.+.+++++.+.+ +.++....+. ..+| .
T Consensus 1 p~vsIiIp~~Ne~~~---l~~~l~sl~~~~y~~~~~eiivVdd~s-~d~t~~i~~~~~~~~~~~i~~~~~~---~~~G~~ 73 (241)
T cd06427 1 PVYTILVPLYKEAEV---LPQLIASLSALDYPRSKLDVKLLLEED-DEETIAAARALRLPSIFRVVVVPPS---QPRTKP 73 (241)
T ss_pred CeEEEEEecCCcHHH---HHHHHHHHHhCcCCcccEEEEEEECCC-CchHHHHHHHhccCCCeeEEEecCC---CCCchH
Confidence 458899999998643 4444444443322 24456677754 56777788876542 2223222211 1223 3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
..+|.|+++. ..-+|.|.|+|..++.+.++++
T Consensus 74 ~a~n~g~~~a----~gd~i~~~DaD~~~~~~~l~~~ 105 (241)
T cd06427 74 KACNYALAFA----RGEYVVIYDAEDAPDPDQLKKA 105 (241)
T ss_pred HHHHHHHHhc----CCCEEEEEcCCCCCChHHHHHH
Confidence 6899999863 2347889999999999998864
No 30
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=94.33 E-value=0.37 Score=43.17 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=57.1
Q ss_pred EEcccCCchhhhHHHHHHhhhhcC-C-CCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRL-V-QPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRN 221 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~l-V-p~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN 221 (396)
||.|||.+... |.++-++|.. . ..++--|||+|+++ +.++++-+.... +...+.... +..| ...+|
T Consensus 1 ViIp~yn~~~~---l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-~~i~~~~~~-----~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNEREN---IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-PRVRLIVRP-----GKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhh---HHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-CceEEEecC-----CCCChHHHHH
Confidence 57899998744 3443333332 1 24788899999753 334333222211 111221111 2234 36789
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 222 LALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 222 ~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
.|+++.+. -+|.|.|+|..++.+.++.|-+
T Consensus 72 ~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 72 EGFKAARG----DVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred HHHHHcCC----CEEEEEECCCCCCHHHHHHHHH
Confidence 99988543 4789999999999998887544
No 31
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=93.95 E-value=0.63 Score=41.14 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=59.2
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCC--C-CCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLV--Q-PPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQRNL 222 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lV--p-~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~QRN~ 222 (396)
||-|+|....- |.++-+.|... | .++-=|||.|++ +..|.+++++.+..+.-. .. ...+| -..+|.
T Consensus 1 VvIp~~ne~~~---i~~~l~sl~~~~~p~~~~eiivvdd~s-~D~t~~~~~~~~~~~~~~--~~----~~~~gk~~aln~ 70 (183)
T cd06438 1 ILIPAHNEEAV---IGNTVRSLKAQDYPRELYRIFVVADNC-TDDTAQVARAAGATVLER--HD----PERRGKGYALDF 70 (183)
T ss_pred CEEeccchHHH---HHHHHHHHHhcCCCCcccEEEEEeCCC-CchHHHHHHHcCCeEEEe--CC----CCCCCHHHHHHH
Confidence 57788887532 22222222221 1 134447788875 466788888877652211 11 11233 356888
Q ss_pred HHHHHHhhCC-CeEEEEecCCCcchhhhhHhhh
Q 016070 223 ALEHIERHRL-DGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 223 AL~~Ir~~~l-~GVVyFADDDNtYdl~LFdemR 254 (396)
|+++.+.... .-+|.|.|.|..++.+.+.+|.
T Consensus 71 g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 71 GFRHLLNLADDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred HHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHH
Confidence 8888764222 3488999999999999998864
No 32
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.76 E-value=1.1 Score=44.80 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=65.6
Q ss_pred CceEEEEcccCCchhhhHH-HHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHH-hcCCceeEeeecCCCCCCCCcch
Q 016070 142 RKQLIVITPTYNRAMQAYF-LNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLR-KTGVMYRQLVSQKNSSSVKDRGV 217 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~-LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~-~sGl~y~HL~~~~~~~~~~~rg~ 217 (396)
.+.|-||-|+|........ |.++...+...+.+.-=|||+|++. |.++++-+. +.+....++....| .|.
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n------~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN------YGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCC------CCH
Confidence 3558999999987655443 4456556666655677799999764 445443333 33554444433322 343
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 218 -HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 218 -~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
...|.|+++- ..-+|.|.|.|..|+.+...+|
T Consensus 79 ~~A~~~G~~~A----~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 79 HSAIMAGFSHV----TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred HHHHHHHHHhC----CCCEEEEECCCCCCCHHHHHHH
Confidence 4577888764 2347889999999999888774
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.47 E-value=1 Score=41.37 Aligned_cols=101 Identities=24% Similarity=0.229 Sum_probs=60.1
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcC-CCCC--eeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcch
Q 016070 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRL-VQPP--LLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGV 217 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~--L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~ 217 (396)
..+.|-||.|||.+..- |.+.-+.+.. ..++ +-=|||.|+.. +.+.+++++-+-...++...++. ....
T Consensus 27 ~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~v~~i~~~~~----~g~~ 98 (251)
T cd06439 27 YLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGST-DGTAEIAREYADKGVKLLRFPER----RGKA 98 (251)
T ss_pred CCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCC-ccHHHHHHHHhhCcEEEEEcCCC----CChH
Confidence 44679999999998633 3333333322 2222 55577887653 23445555433222222222211 1125
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
..||.|+++.. .-+|.|.|+|..++.+.+++|
T Consensus 99 ~a~n~gi~~a~----~d~i~~lD~D~~~~~~~l~~l 130 (251)
T cd06439 99 AALNRALALAT----GEIVVFTDANALLDPDALRLL 130 (251)
T ss_pred HHHHHHHHHcC----CCEEEEEccccCcCHHHHHHH
Confidence 78999998763 268999999999999888874
No 34
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.43 E-value=0.43 Score=42.93 Aligned_cols=100 Identities=26% Similarity=0.318 Sum_probs=60.6
Q ss_pred EEcccCCchhhh-HHHHHHhhhhcC-CCCCeeEEEEecCCC--CHHHHH-HHHhcCCceeEeeecCCCCCCCCcc-hhHH
Q 016070 147 VITPTYNRAMQA-YFLNRLAQVLRL-VQPPLLWIVVEENAA--SYETAE-LLRKTGVMYRQLVSQKNSSSVKDRG-VHQR 220 (396)
Q Consensus 147 vVTPTy~R~~Q~-a~LtRLa~TL~l-Vp~~L~WIVVEd~~~--s~~va~-lL~~sGl~y~HL~~~~~~~~~~~rg-~~QR 220 (396)
||.|+|....-. .-|..+...+.. -+++.-.|||.|++. +.++++ +.++.+-..+++..++| .| ...+
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n------~G~~~a~ 74 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKN------RGKGGAV 74 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccC------CCcHHHH
Confidence 578999864322 234454443332 334788999999764 333332 22333333344444333 23 3678
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 221 NLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 221 N~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
|.|++... .=+|.|.|.|..|+.+.+++|-+.
T Consensus 75 ~~g~~~a~----gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 75 RAGMLAAR----GDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred HHHHHHhc----CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 88998753 358899999999999998886543
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.40 E-value=0.33 Score=43.95 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHH--hcCCceeEeeecCCCCCCCCcc-hhHHHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLR--KTGVMYRQLVSQKNSSSVKDRG-VHQRNLA 223 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~--~sGl~y~HL~~~~~~~~~~~rg-~~QRN~A 223 (396)
+|.|||.+.. ..|.+.-++|..- ....|||+|++.. .+...++ ..++.+.+ .+. .+| ...||.|
T Consensus 1 ~vI~~yn~~~--~~l~~~l~sl~~q--~~~iivvDn~s~~-~~~~~~~~~~~~i~~i~--~~~------n~G~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDL--SKLKELLAALAEQ--VDKVVVVDNSSGN-DIELRLRLNSEKIELIH--LGE------NLGIAKALNIG 67 (237)
T ss_pred CEEEEecCCH--HHHHHHHHHHhcc--CCEEEEEeCCCCc-cHHHHhhccCCcEEEEE--CCC------ceehHHhhhHH
Confidence 4778888763 2344444444331 4567888886542 2223333 33333322 222 234 4789999
Q ss_pred HHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 224 LEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 224 L~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
++..+.. ..=.|.|.|+|...+.+.+++|
T Consensus 68 ~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 68 IKAALEN-GADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHhC-CCCEEEEECCCCCcCHhHHHHH
Confidence 9987654 2348999999999999999998
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.26 E-value=0.99 Score=45.75 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=61.5
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcC--CCCCeeEEEEecCCCCHHHHHHHHhcCCce-----eEeeecCCCCCCCC
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRL--VQPPLLWIVVEENAASYETAELLRKTGVMY-----RQLVSQKNSSSVKD 214 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~l--Vp~~L~WIVVEd~~~s~~va~lL~~sGl~y-----~HL~~~~~~~~~~~ 214 (396)
.+.|-||.|+|..... |.+.-++|.. .|.++--|||+|+++ +.|.+++++..-.+ .++...++.+..-.
T Consensus 39 ~p~VSVIIpa~Ne~~~---L~~~L~sL~~q~yp~~~eIIVVDd~St-D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 39 WPAVVAVVPARNEADV---IGECVTSLLEQDYPGKLHVILVDDHST-DGTADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCEEEEEecCCcHhH---HHHHHHHHHhCCCCCceEEEEEeCCCC-CcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 4569999999998644 4444445543 332467778888653 23444444322111 12211111111001
Q ss_pred cchhHHHHHHHHHHhhCC-CeEEEEecCCCcchhhhhHhh
Q 016070 215 RGVHQRNLALEHIERHRL-DGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 215 rg~~QRN~AL~~Ir~~~l-~GVVyFADDDNtYdl~LFdem 253 (396)
-.....|.|++..++... .-+|.|.|+|...+.+-++++
T Consensus 115 Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~l 154 (384)
T TIGR03469 115 GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARL 154 (384)
T ss_pred chHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHH
Confidence 124578888888765433 248999999999998887774
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.93 E-value=0.49 Score=42.38 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCCCCcch
Q 016070 144 QLIVITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAASYETAELLRKT-----GVMYRQLVSQKNSSSVKDRGV 217 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~s~~va~lL~~s-----Gl~y~HL~~~~~~~~~~~rg~ 217 (396)
.|-||.|+|..... |.++-+.|.. .-+++--|||.|+++ ..+.+++++. .+.++++....+. ......
T Consensus 2 ~vsviip~~n~~~~---l~~~L~sl~~q~~~~~eiivVdd~s~-d~t~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~ 75 (196)
T cd02520 2 GVSILKPLCGVDPN---LYENLESFFQQDYPKYEILFCVQDED-DPAIPVVRKLIAKYPNVDARLLIGGEKV--GINPKV 75 (196)
T ss_pred CeEEEEecCCCCcc---HHHHHHHHHhccCCCeEEEEEeCCCc-chHHHHHHHHHHHCCCCcEEEEecCCcC--CCCHhH
Confidence 47899999987543 3343333332 213577778888664 2333333332 2233333222111 111123
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
.++|.|++.. ..-+|.|.|+|..++.+.+++|-.
T Consensus 76 ~~~n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 76 NNLIKGYEEA----RYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred HHHHHHHHhC----CCCEEEEECCCceEChhHHHHHHH
Confidence 4567788753 234788999999999999888643
No 38
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=92.87 E-value=0.85 Score=39.42 Aligned_cols=95 Identities=24% Similarity=0.236 Sum_probs=58.2
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCC---CCCeeEEEEecCCCCHHHHHHHHhcCCce---eEeeecCCCCCCCCcc-hhH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLV---QPPLLWIVVEENAASYETAELLRKTGVMY---RQLVSQKNSSSVKDRG-VHQ 219 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lV---p~~L~WIVVEd~~~s~~va~lL~~sGl~y---~HL~~~~~~~~~~~rg-~~Q 219 (396)
||.|||.+... |-++-+.|..- ..+.-.|||+|++. ..+.+++++.+-.+ +++..++| .| ...
T Consensus 1 iii~~~n~~~~---l~~~l~sl~~~~~~~~~~eiivvd~~s~-d~~~~~~~~~~~~~~~~~~~~~~~n------~G~~~a 70 (185)
T cd04179 1 VVIPAYNEEEN---IPELVERLLAVLEEGYDYEIIVVDDGST-DGTAEIARELAARVPRVRVIRLSRN------FGKGAA 70 (185)
T ss_pred CeecccChHhh---HHHHHHHHHHHhccCCCEEEEEEcCCCC-CChHHHHHHHHHhCCCeEEEEccCC------CCccHH
Confidence 57899997633 33333333332 23688899998764 23445554433332 22333322 23 477
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 220 RNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
+|.|++..+. =+|.|.|+|..++.+..+++=.
T Consensus 71 ~n~g~~~a~g----d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 71 VRAGFKAARG----DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred HHHHHHHhcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 8889887543 4788999999999998887543
No 39
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=92.59 E-value=2.4 Score=42.58 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=61.8
Q ss_pred CCCceEEEEcccCCchhhhHH-HHHHhhhhc----CCC-CCeeEEEEecCCC--CHHHHHHHHhcC----CceeEeeecC
Q 016070 140 EPRKQLIVITPTYNRAMQAYF-LNRLAQVLR----LVQ-PPLLWIVVEENAA--SYETAELLRKTG----VMYRQLVSQK 207 (396)
Q Consensus 140 ~~~~~IivVTPTy~R~~Q~a~-LtRLa~TL~----lVp-~~L~WIVVEd~~~--s~~va~lL~~sG----l~y~HL~~~~ 207 (396)
.+.+.|-||-|+|........ |.++.+.+. .-+ .++--|||+|++. |.++++-+.+.. ...+.+....
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 356789999999987544332 333333332 122 2678899999763 455544443321 2233333333
Q ss_pred CCCCCCCcch-hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 208 NSSSVKDRGV-HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 208 ~~~~~~~rg~-~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
| .|. ..+|.|++.- ..-+|.|.|.|+.++.+.++++
T Consensus 147 N------~G~~~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l 183 (333)
T PTZ00260 147 N------KGKGGAVRIGMLAS----RGKYILMVDADGATDIDDFDKL 183 (333)
T ss_pred C------CChHHHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHH
Confidence 2 232 4577888753 2347899999999998887664
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.52 E-value=1.3 Score=38.25 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=59.1
Q ss_pred EEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCCCHHHHHH----HHhcCCceeEeeecCCCCCCCCcchhHHH
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAASYETAEL----LRKTGVMYRQLVSQKNSSSVKDRGVHQRN 221 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~s~~va~l----L~~sGl~y~HL~~~~~~~~~~~rg~~QRN 221 (396)
||+|+|.++.+ |.+.-++|.. --++.--|||+|++.. .+.++ .++.+....|+.-... + -.....||
T Consensus 1 ivip~~n~~~~---l~~~l~sl~~q~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEA---LELVLKSVLNQSILPFEVIIADDGSTE-ETKELIEEFKSQFPIPIKHVWQEDE--G--FRKAKIRN 72 (182)
T ss_pred CEEeecCChHH---HHHHHHHHHhccCCCCEEEEEeCCCch-hHHHHHHHHHhhcCCceEEEEcCCc--c--hhHHHHHH
Confidence 58899998654 3333333322 1235677899997642 33333 3444555555532211 1 11246789
Q ss_pred HHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 222 LALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 222 ~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
.|++..+ .-+|.|.|+|...+...+++|.+
T Consensus 73 ~g~~~a~----g~~i~~lD~D~~~~~~~l~~~~~ 102 (182)
T cd06420 73 KAIAAAK----GDYLIFIDGDCIPHPDFIADHIE 102 (182)
T ss_pred HHHHHhc----CCEEEEEcCCcccCHHHHHHHHH
Confidence 9998743 45899999999999998887654
No 41
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=92.49 E-value=0.74 Score=43.71 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=55.5
Q ss_pred cCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCH-HHHHHHHhc-CCceeEeeecCCCCCCCCcc-hhHHHHHHHHH
Q 016070 151 TYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASY-ETAELLRKT-GVMYRQLVSQKNSSSVKDRG-VHQRNLALEHI 227 (396)
Q Consensus 151 Ty~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~-~va~lL~~s-Gl~y~HL~~~~~~~~~~~rg-~~QRN~AL~~I 227 (396)
||.|. ...|.++-+.|.. .....|||++++.+. .+.+++++. .+.+.++ ++| .| -.-+|.|+++.
T Consensus 2 tyn~~--~~~l~~~l~sl~~--q~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~--~~N------~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 2 TFNPD--LEHLGELITSLPK--QVDRIIAVDNSPHSDQPLKNARLRGQKIALIHL--GDN------QGIAGAQNQGLDAS 69 (281)
T ss_pred ccCcc--HHHHHHHHHHHHh--cCCEEEEEECcCCCcHhHHHHhccCCCeEEEEC--CCC------cchHHHHHHHHHHH
Confidence 66662 1233334344433 246789999987543 566666642 3333332 222 34 36899999998
Q ss_pred HhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 228 ERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 228 r~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.++.- -.|.|.|||...+.+.+++|-
T Consensus 70 ~~~~~-d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 70 FRRGV-QGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred HHCCC-CEEEEECCCCCCCHHHHHHHH
Confidence 66433 366799999999888777643
No 42
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=92.20 E-value=2 Score=39.25 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=61.4
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhhcCCCC---CeeEEEEecCCC-CHH-HHHHHH---hcCCceeEeeecCCCCCCCCc
Q 016070 144 QLIVITPTYNRAMQAYFLNRLAQVLRLVQP---PLLWIVVEENAA-SYE-TAELLR---KTGVMYRQLVSQKNSSSVKDR 215 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~---~L~WIVVEd~~~-s~~-va~lL~---~sGl~y~HL~~~~~~~~~~~r 215 (396)
.|-||-|||.... .|.+.-.+|....+ .+--|||+|++. |.+ ..++++ ..++..+|+..+.+. +.
T Consensus 2 ~vSViIp~yNe~~---~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~-G~--- 74 (232)
T cd06437 2 MVTVQLPVFNEKY---VVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRT-GY--- 74 (232)
T ss_pred ceEEEEecCCcHH---HHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCC-CC---
Confidence 4779999998743 34444444443222 256677776432 222 222332 236677777654321 11
Q ss_pred chhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 216 GVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 216 g~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
....+|.|++.. ..-+|.|.|.|...+-+.++++-.
T Consensus 75 k~~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 KAGALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred chHHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhh
Confidence 146789999764 334899999999999998888543
No 43
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=90.99 E-value=2.3 Score=42.31 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCceEEEEcccCCchhhhHH-HHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCC-CCCcch-
Q 016070 141 PRKQLIVITPTYNRAMQAYF-LNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSS-VKDRGV- 217 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~-LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~-~~~rg~- 217 (396)
..+.|-||-|||.......+ |..+.+.+.. +.+.-.|||+|++ +..|++++++.|..+.+.... ... ...+|.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgS-tD~T~~ia~~~~~~v~~~~~~--~~~~~~n~Gkg 104 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGS-TDATAERAAAAGARVVSREEI--LPELPPRPGKG 104 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCC-ccHHHHHHHHhcchhhcchhh--hhccccCCCHH
Confidence 34679999999987655432 3334433332 2246778999876 356777888877654432110 000 122342
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCc-chhhhhHhhh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNI-YTMDLFDSLR 254 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNt-Ydl~LFdemR 254 (396)
...|.|++.. ..-+|.|.|.|.. |+.+...+|-
T Consensus 105 ~A~~~g~~~a----~gd~vv~lDaD~~~~~p~~l~~l~ 138 (306)
T PRK13915 105 EALWRSLAAT----TGDIVVFVDADLINFDPMFVPGLL 138 (306)
T ss_pred HHHHHHHHhc----CCCEEEEEeCccccCCHHHHHHHH
Confidence 4567776542 2358889999996 8888777643
No 44
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.47 E-value=3.5 Score=41.63 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=59.3
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcC-CCCCeeEEEEecCCCCHHHHHHHHhcCCc---eeEeeecCCCCCCCCcc-
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRL-VQPPLLWIVVEENAASYETAELLRKTGVM---YRQLVSQKNSSSVKDRG- 216 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~L~WIVVEd~~~s~~va~lL~~sGl~---y~HL~~~~~~~~~~~rg- 216 (396)
.+.|-||.|||..... +.+....|.. --|++-.|||.|+++ +.+.+++++-.-. .+.+..+. .+|
T Consensus 53 ~p~vsViIp~yne~~~---i~~~l~sl~~q~yp~~eiiVvdD~s~-d~t~~~l~~~~~~~~~v~~i~~~~------n~Gk 122 (420)
T PRK11204 53 YPGVSILVPCYNEGEN---VEETISHLLALRYPNYEVIAINDGSS-DNTGEILDRLAAQIPRLRVIHLAE------NQGK 122 (420)
T ss_pred CCCEEEEEecCCCHHH---HHHHHHHHHhCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCCcEEEEEcCC------CCCH
Confidence 3568999999998633 3333333332 223688899999754 2233443332111 12221122 123
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
...+|.|++.. ..=+|.|.|+|+..+-+..++|-
T Consensus 123 a~aln~g~~~a----~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 123 ANALNTGAAAA----RSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred HHHHHHHHHHc----CCCEEEEECCCCCCChhHHHHHH
Confidence 46789998863 22488899999999999888764
No 45
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.87 E-value=3.1 Score=40.07 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=58.1
Q ss_pred EEcccCCchhhhHHHHHHhhhhc-CCCCC--eeEEEEecCCCCHHHHHHHH---hcCCc-eeEeeecCCCCCCCCcc-hh
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLR-LVQPP--LLWIVVEENAASYETAELLR---KTGVM-YRQLVSQKNSSSVKDRG-VH 218 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~-lVp~~--L~WIVVEd~~~s~~va~lL~---~sGl~-y~HL~~~~~~~~~~~rg-~~ 218 (396)
||-|||.+. ...|.+.-++|. +.++. .--|||+|++....+..+++ ....+ .+.+..+. ..| ..
T Consensus 2 IIIp~~N~~--~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~------n~G~~~ 73 (299)
T cd02510 2 VIIIFHNEA--LSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK------REGLIR 73 (299)
T ss_pred EEEEEecCc--HHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC------CCCHHH
Confidence 677899876 244555555544 33333 36899999875444443332 22222 23332222 234 46
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 219 QRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 219 QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
.||.|++.- ..-+|.|.|+|-..+...+++|
T Consensus 74 a~N~g~~~A----~gd~i~fLD~D~~~~~~wL~~l 104 (299)
T cd02510 74 ARIAGARAA----TGDVLVFLDSHCEVNVGWLEPL 104 (299)
T ss_pred HHHHHHHHc----cCCEEEEEeCCcccCccHHHHH
Confidence 899999974 3458999999999988777765
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=87.94 E-value=3.8 Score=39.65 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=66.3
Q ss_pred EEcccCCchhh----hH---HHHHHhhhhcCCCCCeeEEEEecCCCC---HHHHHHHHhcCCc-eeEeeecCCCCCCCCc
Q 016070 147 VITPTYNRAMQ----AY---FLNRLAQVLRLVQPPLLWIVVEENAAS---YETAELLRKTGVM-YRQLVSQKNSSSVKDR 215 (396)
Q Consensus 147 vVTPTy~R~~Q----~a---~LtRLa~TL~lVp~~L~WIVVEd~~~s---~~va~lL~~sGl~-y~HL~~~~~~~~~~~r 215 (396)
||.|.+.+... .. -|.++.++. .++++-=||||+++.. .++.+++...+.. |....... ..-
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~--~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~-----~~f 74 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQ--SDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNG-----EPF 74 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCC-----CCc
Confidence 67888876532 11 144444443 3457888999998753 4577888877766 54432211 111
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
+ -..||.|.+.- ..-+|.|.|.|-..+.++++++.+
T Consensus 75 ~~a~arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 75 SRAKARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CHHHHHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHH
Confidence 2 36799999885 456999999999999999999766
No 47
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=86.85 E-value=3 Score=43.21 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=59.0
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcC--CCCC-eeEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCCC
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRL--VQPP-LLWIVVEENAASYETAELLRKT-----GVMYRQLVSQKNSSSVK 213 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~l--Vp~~-L~WIVVEd~~~s~~va~lL~~s-----Gl~y~HL~~~~~~~~~~ 213 (396)
.|.|=||-|||... ..|.+.-+.|.. .|+. +.-|||+|++ ++.|.+++++. ++..+++ ++
T Consensus 48 ~P~vsVIIP~yNe~---~~l~~~l~sl~~q~yp~~~~eIiVVDd~S-tD~T~~il~~~~~~~~~v~v~~~--~~------ 115 (439)
T TIGR03111 48 LPDITIIIPVYNSE---DTLFNCIESIYNQTYPIELIDIILANNQS-TDDSFQVFCRAQNEFPGLSLRYM--NS------ 115 (439)
T ss_pred CCCEEEEEEeCCCh---HHHHHHHHHHHhcCCCCCCeEEEEEECCC-ChhHHHHHHHHHHhCCCeEEEEe--CC------
Confidence 35688999999976 334444444433 3322 4567777754 34444454421 2333332 11
Q ss_pred Ccc-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 214 DRG-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 214 ~rg-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.+| ...+|.|++..+ .=+|.|.|.|+..+.+.+++|-
T Consensus 116 ~~Gka~AlN~gl~~s~----g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 116 DQGKAKALNAAIYNSI----GKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred CCCHHHHHHHHHHHcc----CCEEEEECCCCCcChHHHHHHH
Confidence 134 467899998643 2389999999999999988853
No 48
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=84.04 E-value=5.3 Score=35.96 Aligned_cols=101 Identities=25% Similarity=0.333 Sum_probs=51.2
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCC--C-HHHHHHHHhcC-CceeEeeecCCCCCCCCcc-h
Q 016070 144 QLIVITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAA--S-YETAELLRKTG-VMYRQLVSQKNSSSVKDRG-V 217 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~--s-~~va~lL~~sG-l~y~HL~~~~~~~~~~~rg-~ 217 (396)
.|-||-|+|.+... |-+.-+.|.... +++.-|||.|++. + ....++.++.+ +..+.+....+. ...+ .
T Consensus 2 ~v~Vvip~~~~~~~---l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~---g~~~k~ 75 (228)
T PF13641_consen 2 RVSVVIPAYNEDDV---LRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNP---GPGGKA 75 (228)
T ss_dssp -EEEE--BSS-HHH---HHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----H---HHHHHH
T ss_pred EEEEEEEecCCHHH---HHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCC---CcchHH
Confidence 48899999998663 333333333211 3688888877543 2 22444444443 223333222111 0111 3
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 218 HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.++|.|++.++ .-+|.|.|||...+.+.++++-
T Consensus 76 ~a~n~~~~~~~----~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 76 RALNEALAAAR----GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HHHHHHHHH-------SEEEEE-SSEEE-CHHHHHHH
T ss_pred HHHHHHHHhcC----CCEEEEECCCcEECHHHHHHHH
Confidence 56788888865 4499999999999998888743
No 49
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=82.47 E-value=10 Score=39.23 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=58.3
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEecCCCCHHHHHHHHhc-----CCceeEeeecCCCCCCCCc
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEENAASYETAELLRKT-----GVMYRQLVSQKNSSSVKDR 215 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd~~~s~~va~lL~~s-----Gl~y~HL~~~~~~~~~~~r 215 (396)
.+.|-||-|+|..... +.+.-+++..-. |++-=|||.|+++ +.|.+++++. ++.+.|. +. .+
T Consensus 74 ~p~vsViIP~yNE~~~---i~~~l~sll~q~yp~~eIivVdDgs~-D~t~~~~~~~~~~~~~v~vv~~--~~------n~ 141 (444)
T PRK14583 74 HPLVSILVPCFNEGLN---ARETIHAALAQTYTNIEVIAINDGSS-DDTAQVLDALLAEDPRLRVIHL--AH------NQ 141 (444)
T ss_pred CCcEEEEEEeCCCHHH---HHHHHHHHHcCCCCCeEEEEEECCCC-ccHHHHHHHHHHhCCCEEEEEe--CC------CC
Confidence 3678999999987643 333333333321 3688888988763 3344444432 2333332 11 23
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
| ...+|.|++. ...-+|.+.|.|...+.+...+|
T Consensus 142 Gka~AlN~gl~~----a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 142 GKAIALRMGAAA----ARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCcCHHHHHHH
Confidence 3 3577888765 23458999999999998877664
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=78.28 E-value=27 Score=38.94 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=62.4
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCCC---CeeEEEEecCCC--C---------------HHHHHHHHhcCCcee
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQP---PLLWIVVEENAA--S---------------YETAELLRKTGVMYR 201 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~---~L~WIVVEd~~~--s---------------~~va~lL~~sGl~y~ 201 (396)
.+.|=||-|||.......+ +.-..+....+ ++--|||+|+++ | +++.++-++.|+.|.
T Consensus 130 ~P~VsViIP~yNE~~~iv~--~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi 207 (713)
T TIGR03030 130 WPTVDVFIPTYNEDLEIVA--TTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYI 207 (713)
T ss_pred CCeeEEEEcCCCCCHHHHH--HHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEE
Confidence 3567788899987654432 11222333333 478889999742 2 356667777777765
Q ss_pred EeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 202 QLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 202 HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
. -++| ........|.||++. ..-+|.|-|.|.+-+-+..+++
T Consensus 208 ~--r~~n----~~~KAgnLN~al~~a----~gd~Il~lDAD~v~~pd~L~~~ 249 (713)
T TIGR03030 208 T--RPRN----VHAKAGNINNALKHT----DGELILIFDADHVPTRDFLQRT 249 (713)
T ss_pred E--CCCC----CCCChHHHHHHHHhc----CCCEEEEECCCCCcChhHHHHH
Confidence 4 2222 111235689999763 2248899999999998887763
No 51
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=55.62 E-value=61 Score=32.71 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=55.4
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCCC--CHHHHHHH-Hhc-CCceeEeeecCCCCCCCCcc
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENAA--SYETAELL-RKT-GVMYRQLVSQKNSSSVKDRG 216 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~--s~~va~lL-~~s-Gl~y~HL~~~~~~~~~~~rg 216 (396)
.+.|-||-|+|....+..+ .-.+|. +--|++--|||.|+++ +.++.+-+ ++. ++..+.+ ... ++.|
T Consensus 40 ~p~VSViiP~~nee~~l~~---~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v-~~~-----~~~G 110 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYE---NLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLV-IDA-----RRHG 110 (373)
T ss_pred CCCeEEEEECCCCChhHHH---HHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE-ECC-----CCCC
Confidence 4568899999988655433 222332 2223566677776543 23333222 221 2222223 211 1234
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016070 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
......++...-++...-+|.|.|+|..-+-+..++|-
T Consensus 111 ~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv 148 (373)
T TIGR03472 111 PNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVV 148 (373)
T ss_pred CChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHH
Confidence 33333333322233445689999999999999888864
No 52
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=52.14 E-value=35 Score=31.86 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=61.8
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcch---
Q 016070 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGV--- 217 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~--- 217 (396)
|...+|.|=....+..++..-.... .++ |+..+-.++ ......++....|...|+.++.+ +.+.|+.
T Consensus 40 Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~-Nv~~~~~da---~~~l~~~~~~~~v~~i~i~FPDP--WpK~rH~krR 109 (195)
T PF02390_consen 40 PDINFIGIEIRKKRVAKALRKAEKR----GLK-NVRFLRGDA---RELLRRLFPPGSVDRIYINFPDP--WPKKRHHKRR 109 (195)
T ss_dssp TTSEEEEEES-HHHHHHHHHHHHHH----TTS-SEEEEES-C---TTHHHHHSTTTSEEEEEEES-------SGGGGGGS
T ss_pred CCCCEEEEecchHHHHHHHHHHHhh----ccc-ceEEEEccH---HHHHhhcccCCchheEEEeCCCC--Ccccchhhhh
Confidence 4567788877766655543211111 443 777664322 33566778878899999999874 4444444
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 218 -HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 218 -~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
.|....-.+-+..+..|.|||+=|+-.|-...-+.++..
T Consensus 110 l~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 110 LVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 444444344444578999999999888777766666663
No 53
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=51.23 E-value=88 Score=33.59 Aligned_cols=211 Identities=20% Similarity=0.246 Sum_probs=113.1
Q ss_pred CCceEEEEcccCCc-hhhhH-HHHHHhhhhcCCCCCeeEEEEecCC--CC---HHHHHHHH----hc-CCceeEeeecCC
Q 016070 141 PRKQLIVITPTYNR-AMQAY-FLNRLAQVLRLVQPPLLWIVVEENA--AS---YETAELLR----KT-GVMYRQLVSQKN 208 (396)
Q Consensus 141 ~~~~IivVTPTy~R-~~Q~a-~LtRLa~TL~lVp~~L~WIVVEd~~--~s---~~va~lL~----~s-Gl~y~HL~~~~~ 208 (396)
+...|.+|-|-..| ..... .|....++-+.-..+++=+||=... .+ ..+.++|. +. +..+.-+..++
T Consensus 245 ~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~- 323 (499)
T PF05679_consen 245 ESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKT- 323 (499)
T ss_pred CCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecC-
Confidence 34789999999988 33332 4445555533334456666663322 11 22333333 43 33445554441
Q ss_pred CCCCCCcchhHHHHHHHHH-HhhCCCeEEEEecCCCcchhhhhHhhhc--cccccee-EeeEeeccCcceeEec--ceee
Q 016070 209 SSSVKDRGVHQRNLALEHI-ERHRLDGIVYFADDDNIYTMDLFDSLRE--ISRFGTW-PVAMLAQSKNKAIIEG--PVCN 282 (396)
Q Consensus 209 ~~~~~~rg~~QRN~AL~~I-r~~~l~GVVyFADDDNtYdl~LFdemR~--ir~vGvW-PVGlvg~~~~~~~vEG--Pvc~ 282 (396)
|.--|-+||+-. +....+-+|+|+|-|=.+..++++.+|. |+..-|+ ||.+.--+ .++.+.+ |.++
T Consensus 324 -------~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~qvy~PI~Fs~y~-p~~~~~~~~~~~~ 395 (499)
T PF05679_consen 324 -------GEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQVYFPIVFSQYN-PDIVYAGKPPEPD 395 (499)
T ss_pred -------CCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcEEEEeeeccccC-CcccccCCCCccc
Confidence 344566677654 3457789999999999999999999775 6655554 88875322 1232222 1122
Q ss_pred C---CeeeEEEcCCCCCCCcccccccceeeeeeccccCCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceecc-
Q 016070 283 G---SQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGT- 358 (396)
Q Consensus 283 ~---~kVvGW~t~~~~~~~R~fpiDMAGFA~Ns~lLwdp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpl- 358 (396)
+ ++-.|+ -|.|-.+|++| -+++++=- |.. ....+.-.-|.+..++.+.++....+|+-+
T Consensus 396 ~~~i~~~~G~--------w~~~gfg~~~~-YksDy~~~-----~~~---~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~R 458 (499)
T PF05679_consen 396 QFDISKDTGF--------WRRFGFGMVCF-YKSDYMRI-----RGG---GFDLSIRGWGGEDVDLYDKFLKSGHKLHVFR 458 (499)
T ss_pred cCccCCCCCc--------cccCCCceEEE-Ehhhhhhh-----ccc---ccccccccccccHHHHHHHHHhCCCceEEEE
Confidence 1 122332 25677777655 23333310 000 000011223444446777777543245533
Q ss_pred CCCCCEEEEEeccCCCCCC
Q 016070 359 PPSCSRILNWHLHLDAHNL 377 (396)
Q Consensus 359 a~~C~kVLVWHtrte~~~~ 377 (396)
+.+-.=+..||.+.=.+++
T Consensus 459 a~ep~L~h~yh~~~C~~~l 477 (499)
T PF05679_consen 459 AVEPGLVHRYHPKHCDPSL 477 (499)
T ss_pred ccCCCeEEEecccCCCCCC
Confidence 3344677899998765543
No 54
>cd00571 UreE UreE urease accessory protein. UreE is a metallochaperone assisting the insertion of a Ni2+ ion in the active site of urease, an important step in the in vivo assembly of urease, an enzyme that hydrolyses urea into ammonia and carbamic acid. The C-terminal region of UreE contains a histidine rich nickel binding site.
Probab=47.44 E-value=76 Score=28.25 Aligned_cols=53 Identities=36% Similarity=0.495 Sum_probs=38.3
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecCC----CCHHHHHHHHhcCCceeEeee
Q 016070 143 KQLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEENA----ASYETAELLRKTGVMYRQLVS 205 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~~----~s~~va~lL~~sGl~y~HL~~ 205 (396)
..+++|||.. ..+|.|+|+-| +|+| +-+++.. ....+.++|++.|++|+..-+
T Consensus 76 e~vl~i~~~~-----~~~~~~l~y~lGNrH~p-----l~i~~~~l~v~~D~~l~~ml~~lg~~~~~~~~ 134 (136)
T cd00571 76 EDVLVITPKD-----MLELARLAYHLGNRHVP-----LQIEEDELYIPYDHVLEDMLRKLGVRYERVER 134 (136)
T ss_pred CcEEEEEcCC-----HHHHHHHHHHhcCCccc-----eEEeCCEEEEcCCHHHHHHHHHcCCeeEEEec
Confidence 4567788754 55789999987 5565 4555543 246789999999999988644
No 55
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=45.39 E-value=2e+02 Score=29.16 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=57.7
Q ss_pred ceEEEE--cccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---CCCc
Q 016070 143 KQLIVI--TPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---VKDR 215 (396)
Q Consensus 143 ~~IivV--TPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~~~r 215 (396)
+.||+- |||+-++.+...|.+..+.+ .+.+.+ -|-+|... -+.+..+.|++.|+...++++.+-... ...|
T Consensus 53 ~~i~~gGGtps~l~~~~l~~L~~~i~~~-~~~~~~-eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R 130 (374)
T PRK05799 53 KSIFIGGGTPTYLSLEALEILKETIKKL-NKKEDL-EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGR 130 (374)
T ss_pred eEEEECCCcccCCCHHHHHHHHHHHHhC-CCCCCC-EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCC
Confidence 456664 99998777655555444432 233233 45677644 478999999999999999999762211 1123
Q ss_pred --chhHHHHHHHHHHhhCCC
Q 016070 216 --GVHQRNLALEHIERHRLD 233 (396)
Q Consensus 216 --g~~QRN~AL~~Ir~~~l~ 233 (396)
...+-..|++.+++...+
T Consensus 131 ~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 131 IHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 345666788888887554
No 56
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=45.11 E-value=2.3e+02 Score=32.86 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCCC---CeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchh
Q 016070 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQP---PLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVH 218 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~---~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~ 218 (396)
.|.+=||-|||.-+.-...-| +...+. ..+ ++.=|||+|++ ++++.++.++.|+.|.+- ++| .....-
T Consensus 259 ~P~VsViIPtYNE~~~vv~~t-I~a~l~-~dYP~~k~EViVVDDgS-~D~t~~la~~~~v~yI~R--~~n----~~gKAG 329 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNT-IYASLG-IDWPKDKLNIWILDDGG-REEFRQFAQEVGVKYIAR--PTH----EHAKAG 329 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHH-HHHHHh-ccCCCCceEEEEEeCCC-ChHHHHHHHHCCcEEEEe--CCC----CcchHH
Confidence 367888889998653322111 222222 222 25556777764 567888999988876542 221 111245
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHh
Q 016070 219 QRNLALEHIERHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 219 QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFde 252 (396)
..|.||++.+ .=+|.|-|.|..-+-+..++
T Consensus 330 nLN~aL~~a~----GEyIavlDAD~ip~pdfL~~ 359 (852)
T PRK11498 330 NINNALKYAK----GEFVAIFDCDHVPTRSFLQM 359 (852)
T ss_pred HHHHHHHhCC----CCEEEEECCCCCCChHHHHH
Confidence 7899998742 23888999999988877775
No 57
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=44.72 E-value=1.6e+02 Score=29.91 Aligned_cols=91 Identities=20% Similarity=0.076 Sum_probs=60.1
Q ss_pred CceEEEE--cccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCCC---CC
Q 016070 142 RKQLIVI--TPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSSV---KD 214 (396)
Q Consensus 142 ~~~IivV--TPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~~---~~ 214 (396)
-+.||+- |||.-.+.|..+|.....-..-+.++. -|-+|... .+.+..+.|++.|+...+|++..-.+.. -.
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~ 138 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGA-EVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD 138 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 4678875 999888877766665554433333243 57778654 3788999999999999999997632211 12
Q ss_pred cc--hhHHHHHHHHHHhhCCC
Q 016070 215 RG--VHQRNLALEHIERHRLD 233 (396)
Q Consensus 215 rg--~~QRN~AL~~Ir~~~l~ 233 (396)
|+ ..+=..|++.+++...+
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 22 34445677788776554
No 58
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=43.98 E-value=2.1e+02 Score=29.41 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=58.7
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCC---CCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCC-CCCC-------Cc
Q 016070 147 VITPTYNRAMQAYFLNRLAQVLRLVQ---PPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNS-SSVK-------DR 215 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp---~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~-~~~~-------~r 215 (396)
||=.||.|+. +|.|.-.+|.... .+..=||..|+... ++++.++.-+...+|+...... .... ..
T Consensus 4 Vlv~ayNRp~---~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~ 79 (334)
T cd02514 4 VLVIACNRPD---YLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYY 79 (334)
T ss_pred EEEEecCCHH---HHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhccccEEEEcccccccccCcccccchhh
Confidence 3445677753 4566666666541 13455788888643 3666666654444455332210 0000 01
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+ ...--.||.++=+....+-|-|-|||-.-+.++|+-|.+.
T Consensus 80 ~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~ 121 (334)
T cd02514 80 RIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQAT 121 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHH
Confidence 1 1223347777655445677788899999888877665543
No 59
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=43.58 E-value=21 Score=39.16 Aligned_cols=43 Identities=30% Similarity=0.672 Sum_probs=32.9
Q ss_pred CCCCCcchhHHH-------HHHHHHHhhCCCeEEEEecCCCc--chh----hhhHhhhcc
Q 016070 210 SSVKDRGVHQRN-------LALEHIERHRLDGIVYFADDDNI--YTM----DLFDSLREI 256 (396)
Q Consensus 210 ~~~~~rg~~QRN-------~AL~~Ir~~~l~GVVyFADDDNt--Ydl----~LFdemR~i 256 (396)
+...+|-.++|| .||.|||. .|+||.|-+.. |++ .||+.|+-.
T Consensus 223 PGILD~plEdrN~IEmqsITALAHLra----aVLYfmDLSe~CGySva~QvkLfhsIKpL 278 (620)
T KOG1490|consen 223 PGILDRPEEDRNIIEMQIITALAHLRS----AVLYFMDLSEMCGYSVAAQVKLYHSIKPL 278 (620)
T ss_pred ccccCcchhhhhHHHHHHHHHHHHhhh----hheeeeechhhhCCCHHHHHHHHHHhHHH
Confidence 345566667776 79999876 89999999987 664 689988753
No 60
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=43.50 E-value=70 Score=26.15 Aligned_cols=53 Identities=28% Similarity=0.368 Sum_probs=35.4
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecCC----CCHHHHHHHHhcCCceeEeeec
Q 016070 144 QLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEENA----ASYETAELLRKTGVMYRQLVSQ 206 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~~----~s~~va~lL~~sGl~y~HL~~~ 206 (396)
-+|+|+|.- ..+|.|||+-| ||+| +.|++.. ....+.++|++.|+.++.+..+
T Consensus 3 ~vl~I~~~~-----~~~~a~l~~~iGNrH~p-----~~i~~~~l~v~~d~~l~~~L~~lg~~~~~~~~~ 61 (87)
T PF05194_consen 3 EVLVIRPRD-----PKEMARLAYHIGNRHWP-----LFIEEDELYVPYDHVLEELLRKLGLEVEKVERP 61 (87)
T ss_dssp EEEEEE-SS-----HHHHHHHHHHHHHTT-------EEEETTEEEEE--HHHHHHHHHTT-EEEEEEEE
T ss_pred eEEEEeCCC-----HHHHHHHHHHHcCCccc-----eEEcCCEEEecCcHHHHHHHHHCCCccEEeeec
Confidence 478888843 34566888888 6787 7777764 2456889999999999887654
No 61
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=42.96 E-value=11 Score=33.89 Aligned_cols=18 Identities=50% Similarity=0.944 Sum_probs=14.4
Q ss_pred CCeEEEEe-cCCCcchhhh
Q 016070 232 LDGIVYFA-DDDNIYTMDL 249 (396)
Q Consensus 232 l~GVVyFA-DDDNtYdl~L 249 (396)
..|++||| |||++|+..+
T Consensus 100 ~kG~avFaS~d~sVy~a~~ 118 (124)
T PF14263_consen 100 VKGIAVFASDDDSVYQASL 118 (124)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeEEEEEeeCChhhhccce
Confidence 57999988 6689998764
No 62
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=42.40 E-value=17 Score=28.63 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCc--chh----hhhHhhhcc
Q 016070 219 QRNLALEHIERHRLDGIVYFADDDNI--YTM----DLFDSLREI 256 (396)
Q Consensus 219 QRN~AL~~Ir~~~l~GVVyFADDDNt--Ydl----~LFdemR~i 256 (396)
|=-.||+|+ .+.|+||.|-+++ |++ .||+|||..
T Consensus 5 qai~AL~hL----~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~ 44 (58)
T PF06858_consen 5 QAITALAHL----ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL 44 (58)
T ss_dssp HHHHGGGGT-----SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 334566665 4589999999987 764 689998864
No 63
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=41.89 E-value=1.9e+02 Score=30.28 Aligned_cols=92 Identities=23% Similarity=0.070 Sum_probs=59.2
Q ss_pred ceEEE--EcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---CCCc
Q 016070 143 KQLIV--ITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---VKDR 215 (396)
Q Consensus 143 ~~Iiv--VTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~~~r 215 (396)
..||+ =|||.--+.|..+|.........+.+.-..|-+|... .+.+..+.|++.|+....|++.+-... ...|
T Consensus 93 ~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 172 (430)
T PRK08208 93 ASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHR 172 (430)
T ss_pred eEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCC
Confidence 34555 3899876766666555554333343213468889864 378899999999999999999763221 1133
Q ss_pred c--hhHHHHHHHHHHhhCCCe
Q 016070 216 G--VHQRNLALEHIERHRLDG 234 (396)
Q Consensus 216 g--~~QRN~AL~~Ir~~~l~G 234 (396)
+ ..+=..|++.+++....-
T Consensus 173 ~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 173 PQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCCe
Confidence 3 345556788888876543
No 64
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=40.54 E-value=2.1e+02 Score=27.88 Aligned_cols=103 Identities=23% Similarity=0.212 Sum_probs=61.2
Q ss_pred ceEEEEcccCCc-hhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhc-CCceeEeeecCCCCCCCCcchhHH
Q 016070 143 KQLIVITPTYNR-AMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKT-GVMYRQLVSQKNSSSVKDRGVHQR 220 (396)
Q Consensus 143 ~~IivVTPTy~R-~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~s-Gl~y~HL~~~~~~~~~~~rg~~QR 220 (396)
+.|.+|.+||.| ..+..-|..|++.--..- =||+-|+..++.+.+.++.. .-..+.+.-+.|.-. .+|.
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~----~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~--agg~--- 73 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDD----VIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGF--AGGF--- 73 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCc----EEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccc--hhhh---
Confidence 568999999998 666677777766554443 23345555566677777776 223333333333211 2232
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 221 NLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 221 N~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
|.+.++.-...-+ .|+|.++|=..+.+..++|.+
T Consensus 74 n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~ 107 (305)
T COG1216 74 NRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLK 107 (305)
T ss_pred hHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHH
Confidence 3455554332222 788889887777888887644
No 65
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=39.48 E-value=3e+02 Score=27.91 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=60.4
Q ss_pred CceEEEE--cccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCC---CCC
Q 016070 142 RKQLIVI--TPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSS---VKD 214 (396)
Q Consensus 142 ~~~IivV--TPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~---~~~ 214 (396)
-+.||+- |||.-.+.|..+|.....-. ++ .-.-|-+|.... +.+..+.|++.|+....+++..-... ...
T Consensus 52 v~~iyfGGGTPs~l~~~~l~~ll~~i~~~--~~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lg 128 (350)
T PRK08446 52 IESVFIGGGTPSTVSAKFYEPIFEIISPY--LS-KDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLG 128 (350)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHh--cC-CCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 3677775 99998888877766655544 43 345678898654 68899999999999999999762221 113
Q ss_pred cc--hhHHHHHHHHHHhhCCC
Q 016070 215 RG--VHQRNLALEHIERHRLD 233 (396)
Q Consensus 215 rg--~~QRN~AL~~Ir~~~l~ 233 (396)
|+ ..+=..|++.+++...+
T Consensus 129 R~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 129 RIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 32 23444567777776554
No 66
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.45 E-value=34 Score=33.92 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=55.9
Q ss_pred EEecCCCCHHHHHHHHhcCCceeEeeecCCCCCC-CCcchhHHHHHHHHHHhhC-CCeEEEEecCCCcchhhhhHh
Q 016070 179 VVEENAASYETAELLRKTGVMYRQLVSQKNSSSV-KDRGVHQRNLALEHIERHR-LDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 179 VVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~-~~rg~~QRN~AL~~Ir~~~-l~GVVyFADDDNtYdl~LFde 252 (396)
+||..+..-++|+-+++.|+.+..=+.-+|-|++ .-||.-. .+|+++.+.+ .-|+-++.|--+..++++..+
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~--~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e 97 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL--QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD 97 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCH--HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh
Confidence 6777777788999999999988777666665553 4566544 3999998874 679999999888888888766
No 67
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=38.94 E-value=2.9e+02 Score=29.80 Aligned_cols=90 Identities=19% Similarity=0.071 Sum_probs=59.0
Q ss_pred ceEEEE--cccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCC---CCHHHHHHHHhcCCceeEeeecCCCCC----C
Q 016070 143 KQLIVI--TPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENA---ASYETAELLRKTGVMYRQLVSQKNSSS----V 212 (396)
Q Consensus 143 ~~IivV--TPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~---~s~~va~lL~~sGl~y~HL~~~~~~~~----~ 212 (396)
..||+- |||.-.+.|..+|........ .+. .+.=+-||.+. -+.+..+.|++.|+...+++..+-... .
T Consensus 220 ~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~-~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i 298 (488)
T PRK08207 220 TTIYFGGGTPTSLTAEELERLLEEIYENFPDVK-NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAI 298 (488)
T ss_pred eEEEEeCCCccCCCHHHHHHHHHHHHHhccccC-CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh
Confidence 467765 999877666555444433221 222 34445789853 378999999999999999988762211 1
Q ss_pred -CCcchhHHHHHHHHHHhhCCC
Q 016070 213 -KDRGVHQRNLALEHIERHRLD 233 (396)
Q Consensus 213 -~~rg~~QRN~AL~~Ir~~~l~ 233 (396)
+.-...+-..|++.+++...+
T Consensus 299 gR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 299 GRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCC
Confidence 222357788888899887664
No 68
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=37.43 E-value=46 Score=28.09 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=45.8
Q ss_pred hHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHh-hCCCeEE
Q 016070 158 AYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIER-HRLDGIV 236 (396)
Q Consensus 158 ~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~-~~l~GVV 236 (396)
|.++..++..|...-.. | -.|.-|+++|++.|++.+.+.-... + .+-..++.|++ .+.+.||
T Consensus 11 K~~~~~~a~~l~~~G~~---i-----~AT~gTa~~L~~~Gi~~~~v~~~~~-------~--g~~~i~~~i~~~g~idlVI 73 (112)
T cd00532 11 KAMLVDLAPKLSSDGFP---L-----FATGGTSRVLADAGIPVRAVSKRHE-------D--GEPTVDAAIAEKGKFDVVI 73 (112)
T ss_pred HHHHHHHHHHHHHCCCE---E-----EECcHHHHHHHHcCCceEEEEecCC-------C--CCcHHHHHHhCCCCEEEEE
Confidence 45556666665544311 1 1366799999999999777743221 0 12447889999 8999999
Q ss_pred EEecCCC
Q 016070 237 YFADDDN 243 (396)
Q Consensus 237 yFADDDN 243 (396)
.+.|..+
T Consensus 74 n~~~~~~ 80 (112)
T cd00532 74 NLRDPRR 80 (112)
T ss_pred EcCCCCc
Confidence 9998444
No 69
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.27 E-value=51 Score=32.63 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred EEecCCCCHHHHHHHHhcCCceeEeeecCCCCCC-CCcchhHHHHHHHHHHhh-CCCeEEEEecCCCcchhhhhHhh
Q 016070 179 VVEENAASYETAELLRKTGVMYRQLVSQKNSSSV-KDRGVHQRNLALEHIERH-RLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 179 VVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~-~~rg~~QRN~AL~~Ir~~-~l~GVVyFADDDNtYdl~LFdem 253 (396)
+||+.+..-++|+-|++.|..+.-.++-+|-|+. .-+|.- +.+|+++++. +.-|+-++.+--+..+++++.++
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g--~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG--EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY 110 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcH--HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh
Confidence 4577667788999999999987777776665542 334433 7788888876 45789888888888888888765
No 70
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=33.19 E-value=54 Score=31.87 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=27.0
Q ss_pred CcchhHHHHHHHHHHhh---CCCeEEEEecCCCcchhhhhHhhhcc
Q 016070 214 DRGVHQRNLALEHIERH---RLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 214 ~rg~~QRN~AL~~Ir~~---~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+.++ ..-.||+.|-++ ..+.++||+||.| |++.|..++..
T Consensus 170 p~g~-~Kg~al~~ll~~~~~~~~~v~~~GD~~n--D~~mf~~~~~~ 212 (266)
T PRK10187 170 PRGT-NKGEAIAAFMQEAPFAGRTPVFVGDDLT--DEAGFAVVNRL 212 (266)
T ss_pred CCCC-CHHHHHHHHHHhcCCCCCeEEEEcCCcc--HHHHHHHHHhc
Confidence 3443 444566666554 3567999999877 88889887643
No 71
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.02 E-value=3.2e+02 Score=27.69 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=57.6
Q ss_pred ceEEE--EcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC----C-C
Q 016070 143 KQLIV--ITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS----V-K 213 (396)
Q Consensus 143 ~~Iiv--VTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~----~-~ 213 (396)
+.||+ =|||.-.+.+..+|.+..+..-.+....- |-+|... .+.+..+.|++.|+...++++..-.+. . +
T Consensus 53 ~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~e-it~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r 131 (377)
T PRK08599 53 KTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEE-FTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGR 131 (377)
T ss_pred eEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 45665 48886555555555544443322322223 4557654 378999999999999999999762221 1 2
Q ss_pred CcchhHHHHHHHHHHhhCCCeE
Q 016070 214 DRGVHQRNLALEHIERHRLDGI 235 (396)
Q Consensus 214 ~rg~~QRN~AL~~Ir~~~l~GV 235 (396)
.....+...|++.+++...+.|
T Consensus 132 ~~~~~~~~~~i~~l~~~g~~~v 153 (377)
T PRK08599 132 THNEEDVYEAIANAKKAGFDNI 153 (377)
T ss_pred CCCHHHHHHHHHHHHHcCCCcE
Confidence 2235678888999988765533
No 72
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.00 E-value=23 Score=31.32 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhcc
Q 016070 60 LVFFALGLLLGMT 72 (396)
Q Consensus 60 ~lcF~~G~f~g~~ 72 (396)
++||++|+.+|++
T Consensus 3 ~i~lvvG~iiG~~ 15 (128)
T PF06295_consen 3 IIGLVVGLIIGFL 15 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 5788888888876
No 73
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=31.83 E-value=70 Score=30.77 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=42.5
Q ss_pred CeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhh---CCCeEEEEecCCCcchhh
Q 016070 174 PLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERH---RLDGIVYFADDDNIYTMD 248 (396)
Q Consensus 174 ~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~---~l~GVVyFADDDNtYdl~ 248 (396)
.+.+.|-++... ..+....|+..|+...-+......=+.-|.+ ..+-.||+||.+. ..+-||.++|-.| |++
T Consensus 119 k~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~~-a~K~~Al~~L~~~~~~~~~~vl~aGDSgN--D~~ 195 (247)
T PF05116_consen 119 KISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNGRDLDILPKG-ASKGAALRYLMERWGIPPEQVLVAGDSGN--DLE 195 (247)
T ss_dssp CECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTCCEEEEEETT--SHHHHHHHHHHHHT--GGGEEEEESSGG--GHH
T ss_pred eEEEEEecccchhHHHHHHHHHHHcCCCeeEEEccceeEEEccCC-CCHHHHHHHHHHHhCCCHHHEEEEeCCCC--cHH
Confidence 355665544332 2457777888888654332211111112333 3488899999875 3456777777666 888
Q ss_pred hhH
Q 016070 249 LFD 251 (396)
Q Consensus 249 LFd 251 (396)
+|.
T Consensus 196 mL~ 198 (247)
T PF05116_consen 196 MLE 198 (247)
T ss_dssp HHC
T ss_pred HHc
Confidence 884
No 74
>PF14773 VIGSSK: Helicase-associated putative binding domain, C-terminal
Probab=29.95 E-value=35 Score=27.22 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.5
Q ss_pred CHHHHHHHHhcCCceeEeee
Q 016070 186 SYETAELLRKTGVMYRQLVS 205 (396)
Q Consensus 186 s~~va~lL~~sGl~y~HL~~ 205 (396)
...+..||...||.|+|.+-
T Consensus 25 ~d~I~aiL~~~gV~YtH~N~ 44 (61)
T PF14773_consen 25 HDPIQAILASAGVEYTHSNQ 44 (61)
T ss_pred ccHHHHHHhhcceeeeecCc
Confidence 45789999999999999864
No 75
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=29.00 E-value=24 Score=39.53 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=26.6
Q ss_pred ccchhhhhhhhhhHHHHHHHHhhhcccCcc
Q 016070 47 LRRKAWRKSLYRCLVFFALGLLLGMTPFGH 76 (396)
Q Consensus 47 ~~~~~w~r~~~~~~lcF~~G~f~g~~p~~~ 76 (396)
++.++|+..+++..+||++|+++|+.-++-
T Consensus 76 ~k~~~~~y~~~kW~~~~lIGi~TgLva~fi 105 (762)
T KOG0474|consen 76 DKKKGRRYEAVKWMVCFLIGICTGLVALFI 105 (762)
T ss_pred cccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999987653
No 76
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=27.87 E-value=42 Score=28.55 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.9
Q ss_pred hhhhhhhHHHHHHHHhh
Q 016070 53 RKSLYRCLVFFALGLLL 69 (396)
Q Consensus 53 ~r~~~~~~lcF~~G~f~ 69 (396)
|-+++-|+.||++|++.
T Consensus 3 kw~l~Lc~~SF~~G~lf 19 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLF 19 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45788899999999863
No 77
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.60 E-value=37 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHhhhcc
Q 016070 56 LYRCLVFFALGLLLGMT 72 (396)
Q Consensus 56 ~~~~~lcF~~G~f~g~~ 72 (396)
++-..+|++.|++.||+
T Consensus 7 il~ivl~ll~G~~~G~f 23 (71)
T COG3763 7 ILLIVLALLAGLIGGFF 23 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678999999999964
No 78
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.42 E-value=32 Score=27.61 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=10.8
Q ss_pred hHHHHHHHHhhhcc
Q 016070 59 CLVFFALGLLLGMT 72 (396)
Q Consensus 59 ~~lcF~~G~f~g~~ 72 (396)
..+||++|+++||+
T Consensus 3 iilali~G~~~Gff 16 (64)
T PF03672_consen 3 IILALIVGAVIGFF 16 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 36788888888875
No 79
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=27.18 E-value=1.3e+02 Score=31.01 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=18.4
Q ss_pred CchhhhHHHHHHhhhhcCCC
Q 016070 153 NRAMQAYFLNRLAQVLRLVQ 172 (396)
Q Consensus 153 ~R~~Q~a~LtRLa~TL~lVp 172 (396)
-...|+.+|.+||+.|.-.|
T Consensus 53 l~~e~a~eLkkla~~l~asp 72 (313)
T COG1395 53 LSRETAEELKKLAKSLLASP 72 (313)
T ss_pred cCHHHHHHHHHHHHHhCCCc
Confidence 37899999999999999998
No 80
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.90 E-value=38 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.042 Sum_probs=18.1
Q ss_pred hhhhhhhhHHHHHHHHhhhcccCccc
Q 016070 52 WRKSLYRCLVFFALGLLLGMTPFGHV 77 (396)
Q Consensus 52 w~r~~~~~~lcF~~G~f~g~~p~~~~ 77 (396)
+--..+-.++||++|+++|..-....
T Consensus 17 ~~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 17 PLPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567889999999998655443
No 81
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=25.81 E-value=3.8e+02 Score=28.12 Aligned_cols=90 Identities=20% Similarity=0.079 Sum_probs=54.1
Q ss_pred ceEEE--EcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---C--C
Q 016070 143 KQLIV--ITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---V--K 213 (396)
Q Consensus 143 ~~Iiv--VTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~--~ 213 (396)
..|++ =|||.-.+.|..+|.+.....-.+.+. .-|-+|... .+.+..+.|++.|+...++++..-... . +
T Consensus 104 ~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~-~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r 182 (453)
T PRK09249 104 SQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPD-AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNR 182 (453)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHHHhCCCCCC-CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCC
Confidence 45555 389986555555444443322112112 236677654 478999999999999999998762211 1 1
Q ss_pred CcchhHHHHHHHHHHhhCCC
Q 016070 214 DRGVHQRNLALEHIERHRLD 233 (396)
Q Consensus 214 ~rg~~QRN~AL~~Ir~~~l~ 233 (396)
.....+-..|++.+++...+
T Consensus 183 ~~~~~~~~~ai~~l~~~G~~ 202 (453)
T PRK09249 183 IQPFEFTFALVEAARELGFT 202 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 12234566778888887654
No 82
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.80 E-value=5e+02 Score=26.87 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=58.0
Q ss_pred ceEEEE--cccCCchhhhHHHHHHhhhhcCCCCCe---eEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---C
Q 016070 143 KQLIVI--TPTYNRAMQAYFLNRLAQVLRLVQPPL---LWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---V 212 (396)
Q Consensus 143 ~~IivV--TPTy~R~~Q~a~LtRLa~TL~lVp~~L---~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~ 212 (396)
++||+- |||.-.+.|.. +|..+|+.-- ++ .-|=+|... .+.+..+.|++.|+....|++..-... .
T Consensus 68 ~~iy~GGGTps~l~~~~l~---~ll~~i~~~~-~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~ 143 (400)
T PRK07379 68 QTVFFGGGTPSLLSVEQLE---RILTTLDQRF-GIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLAL 143 (400)
T ss_pred eEEEECCCccccCCHHHHH---HHHHHHHHhC-CCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHH
Confidence 566664 99987555544 4444443211 23 358889754 377889999999999999999763221 1
Q ss_pred CCcc--hhHHHHHHHHHHhhCCCeE
Q 016070 213 KDRG--VHQRNLALEHIERHRLDGI 235 (396)
Q Consensus 213 ~~rg--~~QRN~AL~~Ir~~~l~GV 235 (396)
-.|+ ..+-..|++.+++...+-|
T Consensus 144 l~R~~~~~~~~~ai~~l~~~G~~~v 168 (400)
T PRK07379 144 CGRSHRVKDIFAAVDLIHQAGIENF 168 (400)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 1233 4677788899988766533
No 83
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.91 E-value=3.5e+02 Score=28.48 Aligned_cols=91 Identities=20% Similarity=0.049 Sum_probs=56.7
Q ss_pred ceEEE--EcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---CCCc
Q 016070 143 KQLIV--ITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---VKDR 215 (396)
Q Consensus 143 ~~Iiv--VTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~~~r 215 (396)
..|++ =|||.-.+.|..+|.+.....-.+... ..|-+|... -+.+..+.|++.|+....|++..-.+. .-.|
T Consensus 105 ~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~-~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R 183 (453)
T PRK13347 105 SQLHWGGGTPTILNPDQFERLMAALRDAFDFAPE-AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINR 183 (453)
T ss_pred EEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCC-ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCC
Confidence 34555 389976666655554444332122212 357788754 378999999999999999998763221 1122
Q ss_pred --chhHHHHHHHHHHhhCCCe
Q 016070 216 --GVHQRNLALEHIERHRLDG 234 (396)
Q Consensus 216 --g~~QRN~AL~~Ir~~~l~G 234 (396)
...+=..|++.+++...+.
T Consensus 184 ~~~~~~~~~ai~~lr~~G~~~ 204 (453)
T PRK13347 184 IQPEEMVARAVELLRAAGFES 204 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCc
Confidence 2345567888888876653
No 84
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=24.84 E-value=5.7e+02 Score=25.86 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=56.7
Q ss_pred ceEEEE--cccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC--CCHHHHHHHHhcCCceeEeeecCCCCC---CCCc
Q 016070 143 KQLIVI--TPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA--ASYETAELLRKTGVMYRQLVSQKNSSS---VKDR 215 (396)
Q Consensus 143 ~~IivV--TPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~--~s~~va~lL~~sGl~y~HL~~~~~~~~---~~~r 215 (396)
+.||+- |||.-.+.|..+|....+..-.+....- |-+|... .+.+..+.|++.|+....+++..-.+. .-.|
T Consensus 53 ~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~e-itie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR 131 (360)
T TIGR00539 53 ESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCE-ITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGR 131 (360)
T ss_pred cEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCE-EEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCC
Confidence 567765 9998665555444433322112222222 6778754 378899999999999999999763221 1123
Q ss_pred --chhHHHHHHHHHHhhCCCe
Q 016070 216 --GVHQRNLALEHIERHRLDG 234 (396)
Q Consensus 216 --g~~QRN~AL~~Ir~~~l~G 234 (396)
...+-..|++.+++...+.
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~~ 152 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIEN 152 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCe
Confidence 2456667888888876653
No 85
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.49 E-value=3.9e+02 Score=27.29 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=58.0
Q ss_pred ceEEE--EcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCC---CCCc
Q 016070 143 KQLIV--ITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSS---VKDR 215 (396)
Q Consensus 143 ~~Iiv--VTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~---~~~r 215 (396)
++||+ =|||.-.+.|..+|....+.. +++.- =|-+|.... +.+..+.|++.|+...++++..-... .-.|
T Consensus 58 ~tiy~GGGTPs~L~~~~l~~ll~~i~~~--~~~~~-eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R 134 (353)
T PRK05904 58 KTIYLGGGTPNCLNDQLLDILLSTIKPY--VDNNC-EFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNR 134 (353)
T ss_pred EEEEECCCccccCCHHHHHHHHHHHHHh--cCCCC-eEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 56775 699998887776655555443 34232 367887553 78999999999999999999762221 1122
Q ss_pred c--hhHHHHHHHHHHhhCCC
Q 016070 216 G--VHQRNLALEHIERHRLD 233 (396)
Q Consensus 216 g--~~QRN~AL~~Ir~~~l~ 233 (396)
+ ..+=..|++.+++...+
T Consensus 135 ~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 135 THTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 2 34555677788776544
No 86
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.74 E-value=47 Score=24.97 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.3
Q ss_pred hhhhhhhHHHH--HHHHhhhccc
Q 016070 53 RKSLYRCLVFF--ALGLLLGMTP 73 (396)
Q Consensus 53 ~r~~~~~~lcF--~~G~f~g~~p 73 (396)
++.+.||.|-+ ++||++|++=
T Consensus 20 ~~SL~HF~LT~~gll~~lv~la~ 42 (45)
T PF11688_consen 20 GTSLFHFGLTAVGLLGFLVGLAY 42 (45)
T ss_pred CcchhHHHHHHHHHHHHHHHHHH
Confidence 36789999876 5889988763
No 87
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=23.43 E-value=85 Score=35.19 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=41.1
Q ss_pred CCCeEEEEecCCCcchhhhhHhhh---cccccceeEeeEeeccCcceeEecceeeCCeeeEEEcCC
Q 016070 231 RLDGIVYFADDDNIYTMDLFDSLR---EISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNE 293 (396)
Q Consensus 231 ~l~GVVyFADDDNtYdl~LFdemR---~ir~vGvWPVGlvg~~~~~~~vEGPvc~~~kVvGW~t~~ 293 (396)
.-|-|||-+||-+.++++-+++.- +..++=+||.|.. .+-||++..++=-=|...|
T Consensus 204 ~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~-------~liGPlftPgkTGCWeCa~ 262 (637)
T TIGR03693 204 PADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQV-------GLAGPVFQQHGDECFEAAW 262 (637)
T ss_pred CCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccc-------eeecceECCCCCcHHHHHH
Confidence 358899999999999999999854 4445667777765 4999999865433355533
No 88
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=23.15 E-value=3.4e+02 Score=27.67 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeec-CCCCCCCCcchhH
Q 016070 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQ-KNSSSVKDRGVHQ 219 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~-~~~~~~~~rg~~Q 219 (396)
+.+.|++.+|||.-..+.+.+.+ -.+..|| + =|++-...+..+.++. +....++.+. .|.|+ .--...+
T Consensus 164 pgd~Vlv~~P~y~~~~~~~~~~g--~~~~~v~--~----~~~g~~~~~l~~~~~~-~~k~i~~~p~p~NPTG-~~~s~~~ 233 (431)
T PRK15481 164 PGDSVAVEDPCFLSSINMLRYAG--FSASPVS--V----DAEGMQPEKLERALAQ-GARAVILTPRAHNPTG-CSLSARR 233 (431)
T ss_pred CCCEEEEeCCCcHHHHHHHHHcC--CeEEeec--c----CCCCCCHHHHHHHHhc-CCCEEEECCCCCCCCC-ccCCHHH
Confidence 45789999999987655554322 2222332 1 1223223345555543 5666666532 33332 1122345
Q ss_pred HHHHHHHHHhhCCCeEEEEecC
Q 016070 220 RNLALEHIERHRLDGIVYFADD 241 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADD 241 (396)
|..-+++.+++. ++..+.||
T Consensus 234 ~~~l~~la~~~~--~~~ii~De 253 (431)
T PRK15481 234 AAALRNLLARYP--QVLVIIDD 253 (431)
T ss_pred HHHHHHHHHhcC--CceEEecC
Confidence 556667777764 67777775
No 89
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=22.07 E-value=6.5e+02 Score=27.36 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=55.1
Q ss_pred CCCceEEEEcccCCchhhhHHHHHHhhhhcCCC-CCeeEEEEec-CCC-CHHHHHHHHhcCCceeEee-ecCCCCCCCCc
Q 016070 140 EPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQ-PPLLWIVVEE-NAA-SYETAELLRKTGVMYRQLV-SQKNSSSVKDR 215 (396)
Q Consensus 140 ~~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp-~~L~WIVVEd-~~~-s~~va~lL~~sGl~y~HL~-~~~~~~~~~~r 215 (396)
.+.+.+-|+-|.|.-..=..++-+ +.|.... +++-=||+.| ++. |.+.++-+++.. +-.|+. ++.+.+. .+
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~--s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~-p~v~~vv~~~~gp~--~K 137 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLE--HNLATLDYENYRIFVGTYPNDPATLREVDRLAARY-PRVHLVIVPHDGPT--SK 137 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHH--HHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHC-CCeEEEEeCCCCCC--CH
Confidence 346778899999976433333221 1232232 3554445544 332 334444333322 223332 2222111 11
Q ss_pred chhHHHHHHHHHHhh-CCC----eEEEEecCCCcchhhhhHhh
Q 016070 216 GVHQRNLALEHIERH-RLD----GIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 216 g~~QRN~AL~~Ir~~-~l~----GVVyFADDDNtYdl~LFdem 253 (396)
...=|.|+++++.. ... -+|.+-|-|+.-+.+.+..+
T Consensus 138 -a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~ 179 (504)
T PRK14716 138 -ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY 179 (504)
T ss_pred -HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH
Confidence 24567788887542 223 48889999999887776654
No 90
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=21.31 E-value=3.2e+02 Score=26.57 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=38.7
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecCC----CCHHHHHHHHhcCCceeEeeecC
Q 016070 143 KQLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEENA----ASYETAELLRKTGVMYRQLVSQK 207 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~~----~s~~va~lL~~sGl~y~HL~~~~ 207 (396)
..+++|||. -..+|.|+|+-| ||+| +.||+.. ....+.++|++-|+.|+..-++=
T Consensus 78 E~Vl~I~~~-----d~~~l~rlayhLGNRH~P-----lqi~~~~L~v~~D~VLedmL~~LG~~v~~~~apF 138 (206)
T PRK13263 78 EAVLRVRAG-----DPLTLMRAAYHLGNRHTP-----VEVGADYLKLEYDPVLADMLRRLGVTVERASAPF 138 (206)
T ss_pred CcEEEEECC-----CHHHHHHHHHHHcCCCcc-----eEEcCCEEEecCCHHHHHHHHHCCCceEEeEecc
Confidence 446777763 356799999988 4455 4455543 13468899999999999987653
No 91
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=21.20 E-value=1.2e+02 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCcch--hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016070 212 VKDRGV--HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 212 ~~~rg~--~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
...+|. ..=+.++++.+++....|......+|..++++|+.+
T Consensus 37 ~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 37 YRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred HhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 344554 445667788888888999999999999999999864
No 92
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=20.57 E-value=1.6e+02 Score=24.47 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=45.4
Q ss_pred hhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEE
Q 016070 157 QAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIV 236 (396)
Q Consensus 157 Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVV 236 (396)
.+.+|..++..|...-..| -.|+.|+++|++.|+..+-+.... ......++.|++...+-||
T Consensus 11 ~k~~~~~~~~~l~~~G~~l--------~aT~gT~~~l~~~gi~~~~v~~~~----------~~~~~i~~~i~~~~id~vI 72 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKL--------VATEGTAKYLQEAGIPVEVVNKVS----------EGRPNIVDLIKNGEIQLVI 72 (110)
T ss_pred cHhHHHHHHHHHHHCCCEE--------EEchHHHHHHHHcCCeEEEEeecC----------CCchhHHHHHHcCCeEEEE
Confidence 3455666666666554222 136679999999998866654321 0123477889999999999
Q ss_pred EEecCCC
Q 016070 237 YFADDDN 243 (396)
Q Consensus 237 yFADDDN 243 (396)
.+.++++
T Consensus 73 n~~~~~~ 79 (110)
T cd01424 73 NTPSGKR 79 (110)
T ss_pred ECCCCCc
Confidence 9987444
No 93
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.48 E-value=56 Score=30.80 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHhhhccc
Q 016070 56 LYRCLVFFALGLLLGMTP 73 (396)
Q Consensus 56 ~~~~~lcF~~G~f~g~~p 73 (396)
++-.++||++|+++|++=
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345688999999999875
No 94
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=20.39 E-value=1.4e+02 Score=28.89 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=39.6
Q ss_pred HHHHHHhcCCceeEeeecCCCCCCCC----cchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016070 189 TAELLRKTGVMYRQLVSQKNSSSVKD----RGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 189 va~lL~~sGl~y~HL~~~~~~~~~~~----rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
...+...--|.=.+|.+++ ++.+. |+..|.-..=.+-+..+..|++|||=|+-.|=-..+.+...
T Consensus 111 l~~~~~~~sl~~I~i~FPD--PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~ 179 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPD--PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLE 179 (227)
T ss_pred HHhcCCCCCeeEEEEECCC--CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHh
Confidence 3334444466677777766 33343 44555544445555668899999998887776554444333
No 95
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.23 E-value=1.4e+02 Score=31.16 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=51.4
Q ss_pred EecCCCCHHHHHHHHhcCCceeEeeecCCCCC-CCCcchhHHHHHHHHHHhh-CCCeEEEEecCCCcchhhhhHhh
Q 016070 180 VEENAASYETAELLRKTGVMYRQLVSQKNSSS-VKDRGVHQRNLALEHIERH-RLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 180 VEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~-~~~rg~~QRN~AL~~Ir~~-~l~GVVyFADDDNtYdl~LFdem 253 (396)
||+.++.-++|+.|++.|+.|.-=++-++-|+ +.-+|.- ..+|+|+++. ..-|+-++.+--+..+++++.+.
T Consensus 111 IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~ 184 (352)
T PRK13396 111 VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV 184 (352)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh
Confidence 44445566799999999998866555455444 2346655 7889999885 46788888888777777777654
No 96
>PRK11677 hypothetical protein; Provisional
Probab=20.03 E-value=52 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcc
Q 016070 60 LVFFALGLLLGMT 72 (396)
Q Consensus 60 ~lcF~~G~f~g~~ 72 (396)
+++|++|+++|++
T Consensus 7 ~i~livG~iiG~~ 19 (134)
T PRK11677 7 LIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHH
Done!