BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016072
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With Mg2+ And L-glutamate
Length = 449
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/396 (88%), Positives = 374/396 (94%)
Query: 1 MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
MKY+QIAELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC
Sbjct: 54 MKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 113
Query: 61 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
AEVNSHLYQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDM
Sbjct: 114 AEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDM 173
Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
M RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTD
Sbjct: 174 MLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTD 233
Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
TD +R GMLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLP
Sbjct: 234 TDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLP 293
Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
GELPT NDWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VL
Sbjct: 294 GELPTYNDWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVL 353
Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
D+TADWT ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN
Sbjct: 354 DLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNA 413
Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct: 414 VTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449
>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|B Chain B, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|C Chain C, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|D Chain D, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|E Chain E, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|F Chain F, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|G Chain G, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
pdb|2GWC|H Chain H, Crystal Structure Of Plant Glutamate Cysteine Ligase In
Complex With A Transition State Analogue
Length = 449
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/395 (85%), Positives = 356/395 (90%)
Query: 2 KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCA 61
KY+QIAELLNSIAERF+WEKV EGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCA
Sbjct: 55 KYDQIAELLNSIAERFEWEKVXEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCA 114
Query: 62 EVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMM 121
EVNSHLYQVKAVAEE GIGFLG GFQPKW +DIP PKGRY+I RNY PKVGSLGLD
Sbjct: 115 EVNSHLYQVKAVAEEXGIGFLGXGFQPKWRREDIPTXPKGRYDIXRNYXPKVGSLGLDXX 174
Query: 122 FRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDT 181
RTCTVQVNLDFSSEAD IRKFRAGLALQPIATALFANSPFTEGKPNG+LS RSHIWTDT
Sbjct: 175 LRTCTVQVNLDFSSEADXIRKFRAGLALQPIATALFANSPFTEGKPNGFLSXRSHIWTDT 234
Query: 182 DNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPG 241
D +R G LPFVFDDSFGFEQYVDYALDVP YF YR KY+DC G +FR FLAGKLPCLPG
Sbjct: 235 DKDRTGXLPFVFDDSFGFEQYVDYALDVPXYFAYRNGKYVDCTGXTFRQFLAGKLPCLPG 294
Query: 242 ELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLD 301
ELPT NDWENHLTTIFPEVRLKRY E RGADGGPWRRLCALPAFWVGLLYDED LQ+VLD
Sbjct: 295 ELPTYNDWENHLTTIFPEVRLKRYXEXRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLD 354
Query: 302 MTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEV 361
+TADWT ER+ LRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN V
Sbjct: 355 LTADWTPAEREXLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAV 414
Query: 362 AEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
EVVRTGVTPAE LL+ Y+G+W +SVDPVF+ELLY
Sbjct: 415 TEVVRTGVTPAENLLEXYNGEWGQSVDPVFQELLY 449
>pdb|3G7R|A Chain A, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
pdb|3G7R|B Chain B, Crystal Structure Of Sco4454, A Tetr-Family
Transcriptional Regulator From Streptomyces Coelicolor
Length = 221
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 314 LRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE 363
+R +V +P DG +R VA+ ++ DG+ GF+ FLN VAE
Sbjct: 94 IRAQVTAARGSSPAADGQVRAVARSIV----DGIRSPGFRGCAFLNAVAE 139
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 198 GFEQYVDYALDVPMYFVYRKKKYIDCAGMSFR---------DFLAGKLPCLPGELPTLND 248
G VD V + K++ D AG+ DFL K G L +
Sbjct: 91 GKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVY 150
Query: 249 WENHLTTIFPEVRLKRYLEMRGADGGPWRRL 279
+E+H PE+R +R+ E GA GG W L
Sbjct: 151 FESHFDRYRPEIR-QRWREQAGAGGGIWYDL 180
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 117 GLDMMFRTCTVQVNLDFSSEADMIRKFRA-------GLALQPIATALFANSPFTEG-KPN 168
G +++R V L + AD A G ++ P+ AL + + +T +
Sbjct: 337 GKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAV 396
Query: 169 GYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQ 201
LS+ + W TDN+ G L D S F+Q
Sbjct: 397 DSLSIDNATWVMTDNSNVGALRLASDGSVDFQQ 429
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 331 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 377
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 143 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 195
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 331 LLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE------VVRTGVTPAEKLLD 377
L + A L LS DGL RG+++ + + E V+R+G P LLD
Sbjct: 144 LHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLD 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,650,698
Number of Sequences: 62578
Number of extensions: 556386
Number of successful extensions: 945
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)