BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016073
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 268/376 (71%), Gaps = 9/376 (2%)
Query: 11 KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
KVP L+ +NR+++ LR++ + + V+LQGGEE RYCTD LFRQES+F +
Sbjct: 18 KVPLALFALNRQRLCERLRKNPAVQAGSI---VVLQGGEETQRYCTDTGVLFRQESFFHW 74
Query: 71 LFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
FGV EPG YG ID+ TGKS LF PRLP +A W+GKI +F+EKY V+ V Y DEI
Sbjct: 75 AFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDEIA 134
Query: 131 GVLQGHYKEPGKP-LLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKS 189
VL KP +L L G+NTDS + + A F+G+ KFE LHP + ECRVFK+
Sbjct: 135 SVLTSQ-----KPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFKT 189
Query: 190 DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATG 249
D EL ++++ N ISSEAH EVMK +VGMKEY++ES+F H+ Y GG RH SYTCIC +G
Sbjct: 190 DMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSG 249
Query: 250 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 309
ENSAVLHYGHA APNDRT ++GDM L DMG EY + SDITCSFP NGKFT+DQ +Y A
Sbjct: 250 ENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEA 309
Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
VL++ AV+ AMKPGV W DMH+LA++I LE L G++ G+VD M+ A LGAVFMPHGL
Sbjct: 310 VLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGL 369
Query: 370 GHFLGIDTHDPGGYPK 385
GHFLGID HD GGYP+
Sbjct: 370 GHFLGIDVHDVGGYPE 385
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 177/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 172/372 (46%), Gaps = 34/372 (9%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
QG Y + L L S N + PA + P++ E R+FKS
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVVHEMRLFKSPE 179
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN
Sbjct: 180 EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGEN 238
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVL 311
+LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL
Sbjct: 239 GCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 312 KAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGH 371
++ + +PG +++ +I++ L K G++ G+VDE++A F HGL H
Sbjct: 295 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSH 354
Query: 372 FLGIDTHDPGGY 383
+LG+D HD G Y
Sbjct: 355 WLGLDVHDVGVY 366
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 177/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 177/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 177/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWYGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 171/372 (45%), Gaps = 34/372 (9%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
QG Y + L L S N + PA + P++ E R+FKS
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVVHEMRLFKSPE 179
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN
Sbjct: 180 EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGEN 238
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVL 311
+L Y N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL
Sbjct: 239 GCILAY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 312 KAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGH 371
++ + +PG +++ +I++ L K G++ G+VDE++A F HGL H
Sbjct: 295 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSH 354
Query: 372 FLGIDTHDPGGY 383
+LG+D HD G Y
Sbjct: 355 WLGLDVHDVGVY 366
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 171/372 (45%), Gaps = 34/372 (9%)
Query: 29 RQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAI---DI 85
RQ L E +P L+ E TR D +RQ S F Y G EP + D
Sbjct: 12 RQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDD 69
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL------------ 133
S+LF +W G+ EK V+ EI L
Sbjct: 70 THNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYH 129
Query: 134 -QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
QG Y + L L S N + PA + P++ E R+FKS
Sbjct: 130 AQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVVHEMRLFKSPE 179
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ SY I +GEN
Sbjct: 180 EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPSYNTIVGSGEN 238
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVL 311
+LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL
Sbjct: 239 GCILHY----TENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 294
Query: 312 KAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGH 371
++ + +PG +++ +I++ L K G++ G+VDE++A F HGL H
Sbjct: 295 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSH 354
Query: 372 FLGIDTHDPGGY 383
+LG+D D G Y
Sbjct: 355 WLGLDVADVGVY 366
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 176/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+ G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 176/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y IT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL H+LG+D HD G Y
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVY 366
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 176/382 (46%), Gaps = 35/382 (9%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHY----TENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F GL H+LG+D HD G Y
Sbjct: 345 RPFFMAGLSHWLGLDVHDVGVY 366
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 175/382 (45%), Gaps = 34/382 (8%)
Query: 19 INREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPG 78
I+R++ RQ L E +P L+ E TR D +RQ S F Y G EP
Sbjct: 3 ISRQE-FQRRRQALVEQMQP-GSAALIFAAPEVTR-SADSEYPYRQNSDFWYFTGFNEPE 59
Query: 79 FYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVL-- 133
+ D S+LF +W G+ EK V+ EI L
Sbjct: 60 AVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQ 119
Query: 134 -----------QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPIL 181
QG Y + L L S N + PA + P++
Sbjct: 120 LLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPAT----------MIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E +HH + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGE-IHHEFNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY R DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHYTENECXEMR---DGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 285
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 286 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 345
Query: 362 AVFMPHGLGHFLGIDTHDPGGY 383
F HGL +LG+D HD G Y
Sbjct: 346 RPFFMHGLSAWLGLDVHDVGVY 367
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 179/374 (47%), Gaps = 37/374 (9%)
Query: 20 NREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGF 79
NRE+++N+L P +L G+ H + +++ Y+ G+ EP
Sbjct: 9 NRERLVNTL---------PDESITILFAGQAPHXSADAHYKFVPNRNFY-YVTGIDEPNV 58
Query: 80 YGAIDIATGKSI---LFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGH 136
+ G S+ LF + P W+GK ++ + V Y D
Sbjct: 59 IFXLK-KFGNSVEETLFIEKSDPVXEKWVGKTVSNEEAEKISGIKKVIYLDSFEKTXSNI 117
Query: 137 YKEPGKPLLFL------LHGLNTDSNNFSKPAQFEGMEKF-ETELNTLHPILSECRVFKS 189
+ L+L G T + F+K + E++ + ++P + E RVFK+
Sbjct: 118 FFTENVKHLYLDLECREWKGTETKTLAFAKHVR----EQYPHVTIGNVYPNICELRVFKT 173
Query: 190 DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATG 249
D E+ +I+ A ++ + V+K + EY++E+ F T G +H ++ I A+G
Sbjct: 174 DEEIEIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQF-DFTLKSSGIKHHAFNTILASG 232
Query: 250 ENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNA 309
+N+ VLHY ND ++GD+ LLD+GA+ +Y +DI+ +FP NG F+S Q IYN
Sbjct: 233 KNATVLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNI 288
Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
VL A +KPG+ + +++ A+K++ E K G++ DE ++ + HG+
Sbjct: 289 VLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLI--QEDEELSK-----YYYHGV 341
Query: 370 GHFLGIDTHDPGGY 383
HFLG+DTHD G Y
Sbjct: 342 SHFLGLDTHDVGTY 355
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTC 244
R +K+D+EL ++ AN ++ H + R G E+ + + + G YT
Sbjct: 157 RAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASRQ--GDNDVPYTS 214
Query: 245 ICATGENSAVLHY--GHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
I A E++++LHY AP + R+F L+D GA Y Y +DIT ++ G S
Sbjct: 215 IVALNEHASILHYMQXDTVAPKESRSF------LIDAGANYHGYAADITRTYAQEGVHNS 268
Query: 302 D--QSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
+ LI AV K +++++KPGV + D+H LA I + L G++ E++
Sbjct: 269 AMFRDLI-QAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMG 327
Query: 360 LGAVFMPHGLGHFLGIDTHDPGG 382
+ F PHG+GHFLG+ HD GG
Sbjct: 328 ITRTFFPHGIGHFLGLQVHDVGG 350
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 15/203 (7%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTC 244
R +K+ +ELA ++ AN I+ + H G E++++ +L T Y
Sbjct: 157 RAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQH--SENDNPYGN 214
Query: 245 ICATGENSAVLHYGH---AAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
I A EN A+LHY H A R+F L+D GA + Y +DIT ++ G+
Sbjct: 215 IVALNENCAILHYTHFDRVAPATHRSF------LIDAGANFNGYAADITRTYDFTGEGEF 268
Query: 302 DQSLIYNAVLKAHN-AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 360
+ + A +K H A++N + PG + ++H + + ++L ++ + DE++A +
Sbjct: 269 AELV---ATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGI 325
Query: 361 GAVFMPHGLGHFLGIDTHDPGGY 383
+ F PHGLGH +G+ HD GG+
Sbjct: 326 TSTFFPHGLGHHIGLQVHDVGGF 348
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 29/215 (13%)
Query: 173 ELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTY 232
E + ++ + R+ KS+ E+ +I+ A +I+ +A + +++ G KE ++ + +
Sbjct: 113 EFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMK 172
Query: 233 MYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCS 292
M G ++ I A+G SA+ H +D+ E GD+ ++D+GA YQ Y SDIT +
Sbjct: 173 M-NGAEKPAFDTIIASGYRSALPH----GVASDKRIERGDLVVIDLGALYQHYNSDITRT 227
Query: 293 FPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNV 352
V G Q IY VL+A + + KPG+ ++ +A II
Sbjct: 228 IVV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNII-------------- 272
Query: 353 DEMMAARLG-AVFMPHGLGHFLGIDTHDPGGYPKV 386
A G + H LGH +G++ H+ +P+V
Sbjct: 273 -----AEYGYGEYFNHSLGHGVGLEVHE---WPRV 299
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 32/240 (13%)
Query: 152 NTDSNNFSKPAQFEGMEKFE-----TELNTLHPILSECRVFKSDHELALIQFANDISSEA 206
NT++ + +E F+ E + ++ + R+ K+ E+ +I+ A +I+ +A
Sbjct: 84 NTETLGIEGTLSYSMVENFKEKSNVKEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKA 143
Query: 207 HVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDR 266
+ +++ G +E ++ + + M G ++ I A+G SA+ H +D+
Sbjct: 144 VMAAIEEITEGKREREVAAKVEYLMKM-NGAEKPAFDTIIASGHRSALPH----GVASDK 198
Query: 267 TFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVC 326
E GD+ ++D+GA Y Y SDIT + V G Q IY VL+A + A KPG+
Sbjct: 199 RIERGDLVVIDLGALYNHYNSDITRTIVV-GSPNEKQREIYEIVLEAQKRAVEAAKPGMT 257
Query: 327 WVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKV 386
++ +A +II E G D + H LGH +G++ H+ +P++
Sbjct: 258 AKELDSIAREIIKE--------YGYGD----------YFIHSLGHGVGLEIHE---WPRI 296
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 24/199 (12%)
Query: 181 LSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHC 240
+ + R+ K + E+ I+ A +IS A +E +++ R GM E ++ ++ L +T G
Sbjct: 127 VKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAAL-LEYTMRKEGAEGV 185
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
++ I A+G SA+ H G A+ D+ E GD+ ++D GA Y+ Y +DIT + G+ +
Sbjct: 186 AFDTIVASGCRSALPH-GKAS---DKVVERGDVIVIDFGATYENYCADITRVVSI-GEPS 240
Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARL 360
+ +++ VL+A + K GV KL + + E +++ G
Sbjct: 241 DEVKEVHSIVLEAQERALKIAKAGVTG----KLLDSVAREFIREKGY------------- 283
Query: 361 GAVFMPHGLGHFLGIDTHD 379
F H LGH +G++ H+
Sbjct: 284 -GEFFGHSLGHGIGLEVHE 301
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 27/204 (13%)
Query: 177 LHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQME-SMFLHHTYMYG 235
L ++ E R+ K E+ +++ A+ I+ + E++ +GMKE ++ + L +
Sbjct: 121 LSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSD 180
Query: 236 GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
G ++ I A+GEN+A H+ P +R GD+ +LD GA ++ Y SDIT + +
Sbjct: 181 GI---AFEPIVASGENAANPHH----EPGERKIRKGDIIILDYGARWKGYCSDITRTIGL 233
Query: 296 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEM 355
G+ IY V A + A++ G+ D+ A ++I
Sbjct: 234 -GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVI----------------- 275
Query: 356 MAARLGAVFMPHGLGHFLGIDTHD 379
A G F+ H GH LG+D H+
Sbjct: 276 SKAGYGEYFI-HRTGHGLGLDVHE 298
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 168 EKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMF 227
E + E ++ + R+ K+D E+ +++ A I+ A ++ R G+ E ++ S
Sbjct: 111 EAIDAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEV-SNE 169
Query: 228 LHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGS 287
L G S+ I A+G SA+ H +++ E GD LD GA Y+ Y S
Sbjct: 170 LEFFMRKQGATSSSFDIIVASGLRSALPH----GVASEKVIETGDFVTLDFGAYYKGYCS 225
Query: 288 DITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGV 347
DIT + V G+ + IYN VL+A +N +K G+ + L I E KG
Sbjct: 226 DITRTIAV-GEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITE---KG-- 279
Query: 348 MVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGG 382
G F H GH +G++ H+ G
Sbjct: 280 ------------YGEYF-GHSTGHGIGLEIHEAPG 301
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 23/206 (11%)
Query: 174 LNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM 233
L+ + P++SE R K E+ + A +I + ++ G E ++ + +
Sbjct: 137 LHPISPVISELREIKDKDEIKAHKKAAEIVDKVFYRFIEGKLEGKSERELANRIEYMIKN 196
Query: 234 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF 293
G S+ I A+G N A H+ P+ R GD+ + D GA+Y Y SD+T +
Sbjct: 197 EFGADDVSFEPIVASGPNGANPHH----RPSHRKIRKGDVVIFDYGAKYLGYCSDVTRTV 252
Query: 294 PVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVD 353
V G + + +Y V +A + + G+ + A II K G
Sbjct: 253 VV-GPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGII----SKYG------- 300
Query: 354 EMMAARLGAVFMPHGLGHFLGIDTHD 379
G F+ H GH LGID H+
Sbjct: 301 ------YGEYFI-HRTGHGLGIDVHE 319
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 10/164 (6%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
+L + R+ K E+ + A H V G E Q+ + G H
Sbjct: 143 VLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEG---H 199
Query: 240 CSYT-CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQ-FYGSDITCSFPVNG 297
+ I +G + A H+G+ +DR + GD+ ++D+G Y+ Y SD T ++ + G
Sbjct: 200 SAVAFVIVGSGPHGADPHHGY----SDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSI-G 254
Query: 298 KFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILES 341
+ D + Y+A+ +A A ++A++PGV + A ++ ++
Sbjct: 255 DPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLADA 298
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
S+ I +TG A++HY N RT ++ L+D GA+Y+ +D+T + T
Sbjct: 380 SFPTISSTGPTGAIIHYAPVPETN-RTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETP-T 437
Query: 301 SDQSLIYNAVLKAHNAVINAMKP 323
+ + + VLK H AV A+ P
Sbjct: 438 AYEKECFTYVLKGHIAVSAAVFP 460
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 48/226 (21%)
Query: 160 KPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
KPA EG E + ++ + ++ A I++ A E K G+
Sbjct: 36 KPAAQEGSEPW----------------VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVT 79
Query: 220 EYQMESMFLHHTYMYGGCRHCS------YTCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
+++ + H Y+ + S + C+T N + H P+ DGD+
Sbjct: 80 TDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICH----GIPDSTVITDGDI 133
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
+D+ A D +FP G + L+ + +A IN +KPG
Sbjct: 134 VNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDRTREATMRAINTVKPG--------- 183
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
+ ++G V E A R G + GH +G H+
Sbjct: 184 ----------RALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHN 219
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 48/226 (21%)
Query: 160 KPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
KPA EG E + ++ + ++ A I++ A E K G+
Sbjct: 36 KPAAQEGSEPW----------------VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVT 79
Query: 220 EYQMESMFLHHTYMYGGCRHCS------YTCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
+++ + H Y+ + S + C T N + H P+ DGD+
Sbjct: 80 TDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICH----GIPDSTVITDGDI 133
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
+D+ A D +FP G + L+ + +A IN +KPG
Sbjct: 134 VNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDRTREATMRAINTVKPG--------- 183
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
+ ++G V E A R G + GH +G H+
Sbjct: 184 ----------RALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHN 219
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 48/226 (21%)
Query: 160 KPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
KPA EG E + ++ + ++ A I++ A E K G+
Sbjct: 30 KPAAQEGSEPW----------------VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVT 73
Query: 220 EYQMESMFLHHTYMYGGCRHCS------YTCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
+++ + H Y+ + S + C T N + H P+ DGD+
Sbjct: 74 TDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICH----GIPDSTVITDGDI 127
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
+D+ A D +FP G + L+ + +A IN +KPG
Sbjct: 128 VNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDRTREATMRAINTVKPG--------- 177
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
+ ++G V E A R G + GH +G H+
Sbjct: 178 ----------RALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHN 213
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 48/226 (21%)
Query: 160 KPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
KPA EG E + ++ + ++ A I++ A E K G+
Sbjct: 33 KPAAQEGSEPW----------------VQTPEVIEKMRVAGRIAAGALAEAGKAVAPGVT 76
Query: 220 EYQMESMFLHHTYMYGGCRHCS------YTCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
+++ + H Y+ + S + C T N + H P+ DGD+
Sbjct: 77 TDELDR--IAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICH----GIPDSTVITDGDI 130
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
+D+ A D +FP G + L+ + +A IN +KPG
Sbjct: 131 VNIDVTAYIGGVHGDTNATFPA-GDVADEHRLLVDRTREATMRAINTVKPG--------- 180
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
+ ++G V E A R G + GH +G H+
Sbjct: 181 ----------RALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHN 216
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 187 FKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLH---------HTYMYGGC 237
K+ E+ ++ A + A EV K G + +E++ L YGG
Sbjct: 16 IKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGY 75
Query: 238 RHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNG 297
++ TC+ N V+H ++ F++GD+ +D+GA YQ D ++ V
Sbjct: 76 KYA--TCVSV---NEEVVH---GLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGE 127
Query: 298 KFTSDQSLIYNAVLKAHNAVINAMKPGV 325
+ L+ + I +KPG+
Sbjct: 128 TDERGKELV-RVTREVLEKAIKMIKPGI 154
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR-----HCSY 242
++ EL + A I A V V + G+ +++ + G H
Sbjct: 35 RTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFP 94
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSD 302
IC++ + V H DGD+ +D GA + D +F V SD
Sbjct: 95 ASICSSVNDQVV----HGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSD 150
Query: 303 QSLIYNAVLKAHNAVINAMKPG 324
++L A + A I AM PG
Sbjct: 151 EAL-SEATRLSMEAGIAAMIPG 171
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 248 TGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIY 307
+G S +L GH +RT E D+ + GA +++ + + SD
Sbjct: 43 SGIVSNLLKMGHTVTVWNRTAEKCDL-FIQEGARLGRTPAEVVSTCDITFACVSDPKAAK 101
Query: 308 NAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 340
+ VL + V+ ++PG C+VDM + + E
Sbjct: 102 DLVL-GPSGVLQGIRPGKCYVDMSTVDADTVTE 133
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 284 FYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLK 343
FY +T +F+S + L+Y+A+ K A+I +V+M + AE++ LE K
Sbjct: 208 FYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALI--------FVNMRRKAERVALELSK 259
Query: 344 K 344
K
Sbjct: 260 K 260
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 232 YMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC 291
++Y C HC Y C +G+ + H +A D + AEY +D
Sbjct: 87 WLYSACGHCDY---CLSGQETLCEHQKNAGYSVDGGY-----------AEYCRAAADYVV 132
Query: 292 SFPVNGKFTSDQSLIYNAVLKAHNAV-INAMKPGVCWVDMHKL 333
P N F + + I+ A + + A+ + KPG WV ++ +
Sbjct: 133 KIPDNLSF-EEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGI 173
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 232 YMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC 291
++Y C HC Y C +G+ + H +A D + AEY +D
Sbjct: 87 WLYSACGHCDY---CLSGQETLCEHQKNAGYSVDGGY-----------AEYCRAAADYVV 132
Query: 292 SFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
P N F + V + KPG WV ++ +
Sbjct: 133 KIPDNLSFEEAAPIFCAGVTTYKALKVTGAKPGE-WVAIYGI 173
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 268 FEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKP 323
FED D ALL +GA+ + G + +NG+ +DQ NAV + V+ P
Sbjct: 106 FEDVDWALL-IGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN----GKFTSDQSLI 306
N+ V H+ + D ++GD+ +D+G + +++ +F V+ + T ++ +
Sbjct: 83 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 142
Query: 307 YNAVLKAHNAVINAMKPG 324
A A + +KPG
Sbjct: 143 IKAAHLCAEAALRLVKPG 160
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN----GKFTSDQSLI 306
N+ V H+ + D ++GD+ +D+G + +++ +F V+ + T ++ +
Sbjct: 90 NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADV 149
Query: 307 YNAVLKAHNAVINAMKPG 324
A A + +KPG
Sbjct: 150 IKAAHLCAEAALRLVKPG 167
>pdb|4DJ2|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|C Chain C, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|D Chain D, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
Length = 320
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 94 APRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEP--GKPLLFLLH 149
APR+PPD ++ + P FQ+ DE L G+ + G P+L LH
Sbjct: 168 APRIPPDKRIFTTRHTPSCLFQD---------VDERAAPLLGYLPQDLLGAPVLLFLH 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,541,614
Number of Sequences: 62578
Number of extensions: 538970
Number of successful extensions: 1324
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 40
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)