RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016073
(396 letters)
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 274 bits (703), Expect = 3e-91
Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 6/193 (3%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+ L++ A DIS+EAH MK +R GM EY++E+ F + G Y+ I A G N+
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA--YSYIVAAGSNA 58
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+LHY H ND+ +DGD+ L+D GAEY Y SDIT +FPVNGKFT +Q +Y AVL
Sbjct: 59 AILHYVH----NDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A I A KPGV + D+H LA +++ E LK+ G++ G+VDE++ + A F PHGLGH+
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 373 LGIDTHDPGGYPK 385
LG+D HD GGY +
Sbjct: 175 LGLDVHDVGGYLR 187
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 184 bits (470), Expect = 4e-54
Identities = 93/251 (37%), Positives = 134/251 (53%), Gaps = 16/251 (6%)
Query: 134 QGHYKEPGKPLLFLLHGLNTDS-NNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHE 192
QG Y + + L L S N + PA L P + E R+FKS E
Sbjct: 129 QGEYAYADEIVFSALEKLRKGSRQNLTAPAT----------LTDWRPWVHEMRLFKSPEE 178
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+A+++ A +IS+ AH M+K R GM EYQ+E +HH + G R+ SY I +GEN
Sbjct: 179 IAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGE-IHHEFNRHGARYPSYNTIVGSGENG 237
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
+LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT Q IY+ VL+
Sbjct: 238 CILHY----TENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLE 293
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
+ + +PG ++ +I++ L K G++ G+VD+++A F HGL H+
Sbjct: 294 SLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHW 353
Query: 373 LGIDTHDPGGY 383
LG+D HD G Y
Sbjct: 354 LGLDVHDVGVY 364
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 179 bits (456), Expect = 1e-52
Identities = 87/330 (26%), Positives = 137/330 (41%), Gaps = 30/330 (9%)
Query: 57 DHLELFRQESYFAYLFGVREPGF---YGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSY 113
L S F YL G GF + A G+ +LF + A IK +
Sbjct: 26 LDALLLTSPSNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGRDEEAAKETSWIKLENV 85
Query: 114 FQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETE 173
+ + D + +L+ GK + + F + E
Sbjct: 86 EVYEDDEDPAAPLDLLGALLEE-LGLAGKRIGIESASIFLTLAAFERLQAALP----RAE 140
Query: 174 LNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM 233
L ++ R+ KS E+A I+ A +I+ A ++ R GM E ++ + +
Sbjct: 141 LVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRK 200
Query: 234 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF 293
GG S+ I A+GEN+A+ HY P+DR DGD+ L+D+G Y Y SDIT +F
Sbjct: 201 -GGAEGPSFDTIVASGENAALPHY----TPSDRKLRDGDLVLIDLGGVYNGYCSDITRTF 255
Query: 294 PVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVD 353
P+ GK + +Q IY AVL+A A I A++PGV ++ A +++ ++
Sbjct: 256 PI-GKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLY------- 307
Query: 354 EMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
G HG+G L D H+ Y
Sbjct: 308 --FLHGTG-----HGVGFVL--DVHEHPQY 328
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 160 bits (406), Expect = 3e-47
Identities = 69/190 (36%), Positives = 101/190 (53%), Gaps = 23/190 (12%)
Query: 194 ALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSA 253
L++ A I++ A + R G+ E ++ + GG R ++ I A+G N+A
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 254 VLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKA 313
V HY P+DR +DGD+ L+D+GAEY Y SDIT +F V GK T +Q +Y AVL+A
Sbjct: 61 VPHY----IPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEA 115
Query: 314 HNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFL 373
A I A+KPGV D+ A +++ ++GG + PHGLGH +
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVL----EEGGY--------------GEYFPHGLGHGI 157
Query: 374 GIDTHDPGGY 383
G+D HD G Y
Sbjct: 158 GLDVHDEGPY 167
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 111 bits (280), Expect = 1e-29
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+P + + R ++L L + +L G E+ R D FRQ+S F YL
Sbjct: 1 IPAKEFAERRARLLALLPPN---------SAAILPGAPEKYRNR-DTEYPFRQDSDFYYL 50
Query: 72 FGVREPGFYGAI-DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIV 130
G EP + D TGKS LF P P+Y +W G+ +EK+ V+ Y DE+
Sbjct: 51 TGFNEPDAVLVLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEAYPIDELD 110
Query: 131 GVLQGHYKEPGKPLLFLLHGLNTDS 155
+L + + + L TDS
Sbjct: 111 EILPELLEGAET----VYYALGTDS 131
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 109 bits (275), Expect = 4e-29
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+P Y R ++ L +L G E+ R D FRQ+S F YL
Sbjct: 1 IPAAEYAARRRRLAAKLFPG---------SVAVLPAGPEKVRSN-DTDYPFRQDSDFYYL 50
Query: 72 FGVREPGFYGAIDIA--TGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEI 129
G EP +D + GKS LF P P+ +W G L +EK+ V+ VY DE+
Sbjct: 51 TGFDEPDAVLVLDPSGGGGKSTLFVPPRDPEDELWDGPRLGLEEAKEKFGVDEVYPIDEL 110
Query: 130 VGVLQGHYKEPGKPLLFLLHGLNTDSN 156
VL G G ++ L G + D +
Sbjct: 111 DAVLPG--LLAGAGTVYYLLGRDPDLD 135
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 116 bits (293), Expect = 7e-29
Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 26/209 (12%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS--- 241
R +K+D+ELA ++ A I+ H + R GM E+ ++ Y+
Sbjct: 159 RAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFD-----INLAYL-TATGQRDNDV 212
Query: 242 -YTCICATGENSAVLHY---GHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSF--PV 295
Y I A E++AVLHY H A R+F L+D GAEY Y +DIT ++
Sbjct: 213 PYGNIVALNEHAAVLHYTKLDHQAPAEMRSF------LIDAGAEYNGYAADITRTYAAKE 266
Query: 296 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG-NVDE 354
+ F +LI V K A+I MKPGV +VD+H + I + L+K ++ G + +
Sbjct: 267 DNDF---AALI-KDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEA 322
Query: 355 MMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
M+ + + F PHGLGH LG+ HD G+
Sbjct: 323 MVEQGITSPFFPHGLGHPLGLQVHDVAGF 351
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 106 bits (268), Expect = 4e-27
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+ L++ A I+ +A E+++ + GM E ++ + + G S+ I A+G NS
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGA-EGPSFDTIVASGPNS 59
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+ H P+DR E+GD+ L+D GA Y Y SDIT + V G+ + + IY VL+
Sbjct: 60 ALPHGV----PSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAV-GEPSDELKEIYEIVLE 114
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A I A+KPGV ++ K A +I E A G F H GH
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEE-----------------AGYGEYF-IHRTGHG 156
Query: 373 LGIDTHD 379
+G++ H+
Sbjct: 157 VGLEVHE 163
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 91.0 bits (226), Expect = 2e-21
Identities = 46/201 (22%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 193 LALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENS 252
+A ++ A +I+ A + R G+ E ++ + + G T + +G +
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAA-AIEQALRAAGGYPAGPTIV-GSGART 58
Query: 253 AVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLK 312
A+ HY P+DR ++GD+ L+D+G Y Y +D+T +F + G+ + +Q +Y AV +
Sbjct: 59 ALPHYR----PDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVI-GEPSDEQRELYEAVRE 113
Query: 313 AHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHF 372
A A + A++PGV ++ A +++ E H GH
Sbjct: 114 AQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNF------------------GHRTGHG 155
Query: 373 LGIDTHDPGGYPKVYMIKLTA 393
+G++ H+P L
Sbjct: 156 IGLEIHEPPVLKAGDDTVLEP 176
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 75.0 bits (184), Expect = 7e-15
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 42/232 (18%)
Query: 164 FEGME-------KFETELNT--LHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKT 214
FEG + ++++ELN + R K+ E+ I+ A I+ + +
Sbjct: 95 FEGQQVSWETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFI 154
Query: 215 RVGMKEYQMES---MFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDG 271
+ GM E ++ + F+ G S+ I A+G A+ H G A+ D+ G
Sbjct: 155 QAGMSEREIAAELEWFMRQQ----GAEKASFDTIVASGWRGALPH-GKAS---DKIVAAG 206
Query: 272 DMALLDMGAEYQFYGSDITCSFPVNGKFTSDQS----LIYNAVLKAHNAVINAMKPGVCW 327
+ LD GA YQ Y SD+T + VNG+ S +S +Y VL+A A I+A++PGV
Sbjct: 207 EFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRC 266
Query: 328 VDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHD 379
+ A ++I E A G F H GH +GI+ H+
Sbjct: 267 QQVDDAARRVITE-----------------AGYGDYF-GHNTGHAIGIEVHE 300
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 54.1 bits (131), Expect = 2e-08
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
S+ I G N A++HY ++R + L+D G +Y +DIT + + G+ T
Sbjct: 53 SFDTISGFGPNGAIVHY-SPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHL-GEPT 110
Query: 301 SDQSLIYNAVLKAHNAVINA 320
++Q Y VLK H A+ A
Sbjct: 111 AEQKRDYTLVLKGHIALARA 130
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 47.6 bits (114), Expect = 4e-06
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM---FLHHTYMYGGCRHC-SY- 242
K+ E+ ++ A I+++A EV + G+ +++ + F+ Y +
Sbjct: 6 KTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFP 65
Query: 243 --TCICATGENSAVLHYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
TCI N V H P D + ++GD+ +D+GA Y D +F V
Sbjct: 66 FPTCISV---NEVVAHG----IPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVS 118
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGV 325
D + A +A A I A+KPG
Sbjct: 119 DEDAKRLLEATKEALYAGIEAVKPGA 144
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 45.6 bits (109), Expect = 2e-05
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 256 HYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAH 314
HY +P D R F +GD+ LD+GA Y +D + + GK+ + L+ A +A
Sbjct: 61 HY--TPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKY---EDLV-EASEEAL 114
Query: 315 NAVINAMKPGV 325
A I ++PGV
Sbjct: 115 EAAIEVVRPGV 125
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 44.7 bits (105), Expect = 5e-05
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
I +E RV KS E+ ++ + +I+ E K RVG ++ + + M H
Sbjct: 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAY-KAAVMSKSETH 229
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
S + + G + + P++ GD+ D G + YG+DI +F V G+
Sbjct: 230 FSRFHLISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEP 283
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY + H +++ + PGV D+ +E +KK G+ N
Sbjct: 284 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDST----MEVIKKSGLPNYN-----RGH 334
Query: 360 LGAVFMPHGLGHFLGID 376
LG HG G FLG++
Sbjct: 335 LG-----HGNGVFLGLE 346
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 44.3 bits (104), Expect = 5e-05
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
I +E RV KS E+ ++ + +I+ E K RVG ++ + + M H
Sbjct: 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAY-KAAVMSKSETH 146
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
S + + G + + P++ GD+ D G + YG+DI +F V G+
Sbjct: 147 FSRFHLISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEP 200
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY + H +++ + PGV D+ +E +KK G+ N
Sbjct: 201 PEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDST----MEVIKKSGLPNYN-----RGH 251
Query: 360 LGAVFMPHGLGHFLGID 376
LG HG G FLG++
Sbjct: 252 LG-----HGNGVFLGLE 263
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAV 310
N V+H P+ + +DGD+ +D+G Y Y D +F V + L+
Sbjct: 71 NEVVIH----GIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLL-ECT 125
Query: 311 LKAHNAVINAMKPG 324
++ I KPG
Sbjct: 126 EESLYKAIEEAKPG 139
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 39.0 bits (92), Expect = 0.002
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
C N V H P+DR +DGD+ +D+G E Y D +F V
Sbjct: 57 SICTSV---NEVVCH----GIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEE 109
Query: 302 DQSLIYNAVLKAHNAVINAMKPGV 325
+ L+ +A I A+KPG
Sbjct: 110 AKKLV-EVTEEALYKGIEAVKPGN 132
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 38.5 bits (89), Expect = 0.006
Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 21/197 (10%)
Query: 180 ILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRH 239
+ +E R+ KS E+ ++ + +I+ KK RVG ++ + F +
Sbjct: 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 240 CSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKF 299
+ I + G+N + + + GD+ D G + YG+D+ +F V G+
Sbjct: 230 SRFNLI-SVGDN-----FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTF-VLGEP 282
Query: 300 TSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR 359
IY+ + H +++ + PGV + +I K G+ N
Sbjct: 283 DKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVI----KTSGLPHYN-----RGH 333
Query: 360 LGAVFMPHGLGHFLGID 376
LG HG G FLG++
Sbjct: 334 LG-----HGDGVFLGLE 345
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 37.0 bits (87), Expect = 0.010
Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 29/151 (19%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGM-------------KEYQMESMFLHHTYMY 234
K+ E+ ++ A +++E E+ + G+ ++ L + + +
Sbjct: 6 KTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGY-HGF 64
Query: 235 GGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFP 294
C N V H P+D+ ++GD+ +D+ Y D + +F
Sbjct: 65 PK-----SICTSV---NEVVCH----GIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFG 112
Query: 295 VNGKFT-SDQSLIYNAVLKAHNAVINAMKPG 324
V G+ + D+ L +A I A+KPG
Sbjct: 113 V-GEISPEDKRLC-EVTKEALYLGIAAVKPG 141
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 36.3 bits (84), Expect = 0.018
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 199 ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYG 258
A I S+ E + G+K ++ + G ++ C + E +A H+
Sbjct: 11 AGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGA--EPAFPCNISINECAA--HF- 65
Query: 259 HAAAPND-RTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAV 317
D F+DGD+ LD+GA Y +D + + ++ + + A A
Sbjct: 66 -TPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDN----LVKAAKDALYTA 120
Query: 318 INAMKPGVCWVDMHKLAEKII 338
I ++ GV ++ K +++I
Sbjct: 121 IKEIRAGVRVGEIGKAIQEVI 141
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 35.0 bits (81), Expect = 0.041
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 278 MGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKI 337
+GA Y+ Y S+I +F ++ TS+Q YN +L ++ +KPG D++ +
Sbjct: 98 LGARYKSYCSNIARTFLIDP--TSEQQKNYNFLLALQEEILKELKPGAKLSDVY----QK 151
Query: 338 ILESLKK 344
L+ +KK
Sbjct: 152 TLDYIKK 158
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 34.2 bits (79), Expect = 0.068
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV-NGKFTS 301
TCI N+ V H+ + T +DGD+ +D+G Y + + + V T
Sbjct: 61 TCISV---NNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETP 117
Query: 302 DQSLIYNAVLKAHNA---VINAMKPGVCWVDMHKLAEKII 338
+ + AH A + ++PG D+ + +K+I
Sbjct: 118 VTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVI 157
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 34.1 bits (79), Expect = 0.091
Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 29/137 (21%)
Query: 199 ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCR-----HCSYTCICATGENSA 253
A +I + + GM ++ F+ + G + S A
Sbjct: 7 AGEIHRQVRKYAQSLIKPGMTLLEIAE-FVENRIRELGAGPAFPVNLSINECAA------ 59
Query: 254 VLHYGHAAAPN---DRTFEDGDMALLDMGAEYQFYGSD--ITCSFPVNGKFTSDQSLIYN 308
HY PN D ++GD+ LD GA Y +D T F + K+ L+
Sbjct: 60 --HY----TPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDF--DPKY---DDLL-E 107
Query: 309 AVLKAHNAVINAMKPGV 325
A +A NA I P V
Sbjct: 108 AAKEALNAAIKEAGPDV 124
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 33.7 bits (78), Expect = 0.11
Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 31/152 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGM---------KEYQMESM-----FLHHTYM 233
KS EL ++ I + A E+ K GM ++ +E Y
Sbjct: 11 KSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKR-LEEHGAIPSPEG-YYG 68
Query: 234 YGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITC-S 292
+ G TCI N V H P R +DGD+ +D+ A Y D T +
Sbjct: 69 FPGS-----TCISV---NEEVAH----GIPGPRVIKDGDLVNIDVSAYLDGYHGD-TGIT 115
Query: 293 FPVNGKFTSDQSLIYNAVLKAHNAVINAMKPG 324
F V G + + + +A A I +K G
Sbjct: 116 FAV-GPVSEEAEKLCRVAEEALWAGIKQVKAG 146
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 32.1 bits (73), Expect = 0.49
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 246 CATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSL 305
C T N + H P+ R EDGD+ +D+ Y+ D+ +F V + + L
Sbjct: 200 CCTSVNEVICH----GIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQL 255
Query: 306 I---YNAVLKAHNAVINAMKPGV 325
+ Y + KA I +KPGV
Sbjct: 256 VKCTYECLEKA----IAIVKPGV 274
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein;
Provisional.
Length = 347
Score = 30.5 bits (69), Expect = 1.7
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 15 ELYFINR----EKVLNSLRQHLTETSRPLH-GFVLLQGGEEQTRYCTDHLELFRQESYFA 69
EL IN+ +V+ +L +H+ T R ++ +++L+G + + + L R +
Sbjct: 221 ELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWE 280
Query: 70 YLFGV 74
+L+ V
Sbjct: 281 HLYHV 285
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger
domain. The ADDz zinc finger domain is present in the
chromatin-associated proteins
cytosine-5-methyltransferase 3 (Dnmt3) and ATRX, a SNF2
type transcription factor protein. The Dnmt3 family
includes two active DNA methyltransferases, Dnmt3a and
-3b, and one regulatory factor Dnmt3l. DNA methylation
is an important epigenetic mechanism involved in diverse
biological processes such as embryonic development, gene
expression, and genomic imprinting. The ADDz domain is a
PHD-like zinc finger motif that contains two parts, a
C2-C2 and a PHD-like zinc finger. PHD zinc finger
domains have been identified in more than 40 proteins
that are mainly involved in chromatin mediated
transcriptional control; the classical PHD zinc finger
has a C4-H-C3 motif that spans about 50-80 amino acids.
In ADDz, the conserved histidine residue of the PHD
finger is replaced by a cysteine, and an additional zinc
finger C2-C2 like motif is located about twenty residues
upstream of the C4-C-C3 motif.
Length = 120
Score = 29.2 bits (66), Expect = 1.7
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 219 KEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
KE E M Y+Y + SY IC G
Sbjct: 31 KENFKECM-----YLYDNDGYQSYCTICCGGGE 58
>gnl|CDD|220794 pfam10517, DM13, Electron transfer DM13. The DM13 domain is a
component of a novel electron-transfer system
potentially involved in oxidative modification of animal
cell-surface proteins. It contains a nearly absolutely
conserved cysteine, which could be involved in a redox
reaction, either as a naked thiol group or through
binding a prosthetic group like heme.
Length = 107
Score = 27.6 bits (62), Expect = 4.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 81 GAIDIATGKSIL-----FAPRLPPDYAVWLGK 107
G + I GK++L FAP PDY V+LG
Sbjct: 15 GTVTIVDGKTLLVLEFDFAPSGGPDYKVYLGP 46
>gnl|CDD|185105 PRK15183, PRK15183, Vi polysaccharide biosynthesis protein TviA;
Provisional.
Length = 143
Score = 28.1 bits (62), Expect = 4.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 22 EKVLNSLRQHLTETSRP----LHGFVLLQGGEE-QTRYCTDHLELFRQESYFAYLFGVRE 76
EK+L R + +R + F+ G EE Q R+ ++R A FGVRE
Sbjct: 71 EKILTEQRDYRFRINRKDIVKMKYFLSESGMEELQDRFMNSSSTMYRWRKELAVKFGVRE 130
Query: 77 PGF 79
P +
Sbjct: 131 PRY 133
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 29.1 bits (65), Expect = 4.6
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 243 TCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSD 302
TCI N+ V H+ + D ++GD+ +D+G + + + +F V
Sbjct: 79 TCISV---NNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEP 135
Query: 303 QSLIYNAVLKAHNAVINA----MKPGVCWVDMHKLAEKI 337
+ V+ A + A +KPG + + K+
Sbjct: 136 VTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKV 174
>gnl|CDD|153239 cd03145, GAT1_cyanophycinase, Type 1 glutamine amidotransferase
(GATase1)-like domain found in cyanophycinase. Type 1
glutamine amidotransferase (GATase1)-like domain found
in cyanophycinase. This group contains proteins similar
to the extracellular cyanophycinases from Pseudomonas
anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803
CphB. Cyanophycinases are intracellular exopeptidases
which hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Cyanophycinase is believed to be a
serine-type exopeptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic triad
typical of GATase1 domains by having a Ser in place of
the reactive Cys at the nucleophile elbow.
Length = 217
Score = 28.4 bits (64), Expect = 5.6
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 16/61 (26%)
Query: 334 AEKIILESLKKGGVMVGN-------VDEMMAA-------RLGAVFMPHGLG--HFLGIDT 377
+ + + G V+ G D M+A R V M GLG + ID
Sbjct: 106 LLDALRKVYRGGVVIGGTSAGAAVMSDTMIAGGGAGEAPRESEVDMAPGLGFVPNVIIDQ 165
Query: 378 H 378
H
Sbjct: 166 H 166
>gnl|CDD|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5)
methyltransferases (C5-MTases) 3 (Dnmt3). Dnmt3 is a de
novo DNA methyltransferase family that includes two
active enzymes Dnmt3a and -3b and one regulatory factor
Dnmt3l. The ADDz domain of Dnmt3 is located in the
C-terminal region of Dnmt3, which is an active catalytic
domain in Dnmt3a and -b, but lacks some residues for
enzymatic activity in Dnmt3l. DNA methylation is an
important epigenetic mechanism involved in diverse
biological processes such as embryonic development, gene
expression, and genomic imprinting. The ADDz_Dnmt3
domain is a PHD-like zinc finger motif that contains two
parts, a C2-C2 and a PHD-like zinc finger. PHD zinc
finger domains have been identified in more than 40
proteins that are mainly involved in chromatin mediated
transcriptional control; the classical PHD zinc finger
has a C4-H-C3 motif that spans about 50-80 amino acids.
In ADDz, the conserved histidine residue of the PHD
finger is replaced by a cysteine, and an additional zinc
finger C2-C2 like motif is located about twenty residues
upstream of the C4-C-C3 motif.
Length = 126
Score = 27.6 bits (62), Expect = 6.6
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 226 MFLHHTYMYGGCRHCSYTCICATGEN 251
FL Y+Y + SY IC G
Sbjct: 33 NFLECMYLYDNDGYQSYCTICCGGGE 58
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part of
an alpha/beta hydrolase domain.
Length = 62
Score = 26.0 bits (58), Expect = 8.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 134 QGHYKEPGKPLLFLLHGLNTDSNNF 158
+ + KP++ L HGL S ++
Sbjct: 34 RNNRGRGKKPVVLLQHGLLASSADW 58
>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like.
MDR/AHD-like proteins, including a protein annotated as
a threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via
NAD(H)-dependent oxidation. The zinc-dependent alcohol
dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent
interconversion of alcohols to aldehydes or ketones.
Zinc-dependent ADHs are medium chain
dehydrogenase/reductase type proteins (MDRs) and have a
NAD(P)(H)-binding domain in a Rossmann fold of an
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. In addition to alcohol
dehydrogenases, this group includes quinone reductase,
sorbitol dehydrogenase, formaldehyde dehydrogenase,
butanediol DH, ketose reductase, cinnamyl reductase, and
numerous others. These proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 339
Score = 28.1 bits (63), Expect = 8.4
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 20/71 (28%)
Query: 232 YMYGGCRHC-----SYTCICATGENSAV---LHYGHA-----------AAPNDRTFEDGD 272
Y Y GC C + +C T + +A GHA P+D +F DG
Sbjct: 85 YHYVGCGACRNCRRGWMQLC-TSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGA 143
Query: 273 MALLDMGAEYQ 283
+ L +G Y
Sbjct: 144 LLLCGIGTAYH 154
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 28.4 bits (64), Expect = 8.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 367 HGLGHFLGIDTHDPGGYPKVYMIKLTADG 395
HG+G FLG++T + GG + Y+ A
Sbjct: 482 HGIGRFLGLETLEVGGIERDYLELEYAGE 510
>gnl|CDD|146128 pfam03333, PapB, Adhesin biosynthesis transcription regulatory
protein. This family includes PapB, DaaA, FanA, FanB,
and AfaA.
Length = 91
Score = 26.5 bits (59), Expect = 9.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 4 SSSLSPPKVPKELYF-------INREKVLNSLRQHL 32
L P V +E ++ I+ EKV+N+LR +L
Sbjct: 15 EGYLLPGSVSEEHFWLLIEISSIHSEKVINALRDYL 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,368,678
Number of extensions: 1975462
Number of successful extensions: 1741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1698
Number of HSP's successfully gapped: 41
Length of query: 396
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 297
Effective length of database: 6,546,556
Effective search space: 1944327132
Effective search space used: 1944327132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)