RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 016073
(396 letters)
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 496 bits (1279), Expect = e-175
Identities = 214/377 (56%), Positives = 265/377 (70%), Gaps = 7/377 (1%)
Query: 9 PPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF 68
KVP L+ +NR+++ LR++ + V+LQGGEE RYCTD LFRQES+F
Sbjct: 16 TLKVPLALFALNRQRLCERLRKNPAVQA---GSIVVLQGGEETQRYCTDTGVLFRQESFF 72
Query: 69 AYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
+ FGV EPG YG ID+ TGKS LF PRLP +A W+GKI +F+EKY V+ V Y DE
Sbjct: 73 HWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQYVDE 132
Query: 129 IVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFK 188
I VL +L L G+NTDS + + A F+G+ KFE LHP + ECRVFK
Sbjct: 133 IASVL----TSQKPSVLLTLRGVNTDSGSVCREASFDGISKFEVNNTILHPEIVECRVFK 188
Query: 189 SDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICAT 248
+D EL ++++ N ISSEAH EVMK +VGMKEY++ES+F H+ Y GG RH SYTCIC +
Sbjct: 189 TDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGS 248
Query: 249 GENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN 308
GENSAVLHYGHA APNDRT ++GDM L DMG EY + SDITCSFP NGKFT+DQ +Y
Sbjct: 249 GENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYE 308
Query: 309 AVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHG 368
AVL++ AV+ AMKPGV W DMH+LA++I LE L G++ G+VD M+ A LGAVFMPHG
Sbjct: 309 AVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHG 368
Query: 369 LGHFLGIDTHDPGGYPK 385
LGHFLGID HD GGYP+
Sbjct: 369 LGHFLGIDVHDVGGYPE 385
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 414 bits (1066), Expect = e-144
Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 27/378 (7%)
Query: 12 VPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYL 71
+ + + NRE+++N+L P +L G+ D F F Y+
Sbjct: 1 MKSKFFAQNRERLVNTL---------PDESITILFAGQAPHM-SADAHYKFVPNRNFYYV 50
Query: 72 FGVREPGFYGAIDIA--TGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEI 129
G+ EP + + + LF + P W+GK ++ + V Y D
Sbjct: 51 TGIDEPNVIFMLKKFGNSVEETLFIEKSDPVMEKWVGKTVSNEEAEKISGIKKVIYLDSF 110
Query: 130 VGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFE---TELNTLHPILSECRV 186
+ + L+L +K F + + + ++P + E RV
Sbjct: 111 EKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQYPHVTIGNVYPNICELRV 170
Query: 187 FKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCIC 246
FK+D E+ +I+ A ++ + V+K + M EY++E+ F G +H ++ I
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFT-LKSSGIKHHAFNTIL 229
Query: 247 ATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLI 306
A+G+N+ VLHY ND ++GD+ LLD+GA+ +Y +DI+ +FP NG F+S Q I
Sbjct: 230 ASGKNATVLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQI 285
Query: 307 YNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMP 366
YN VL A +KPG+ + +++ A+K++ E K G++ + + +
Sbjct: 286 YNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELS-------KYYY 338
Query: 367 HGLGHFLGIDTHDPGGYP 384
HG+ HFLG+DTHD G Y
Sbjct: 339 HGVSHFLGLDTHDVGTYK 356
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 409 bits (1052), Expect = e-141
Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 29/375 (7%)
Query: 14 KELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF-AYLF 72
K Y + E++ R+ L R +++ G+ + + D+ F+ F A++
Sbjct: 5 KATYQQHIEELQARTREAL---QREGLDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVP 61
Query: 73 GVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKI-KPLSYFQEKYMVNMVYYTDEIVG 131
+ P + ++ +++F P D+ W +P ++ + + + ++ D +
Sbjct: 62 VIDNPNCWLVVNGVDKPTLIFYR--PEDF--WHKVPPEPNDFWTDSFDIKLLQQADAVEK 117
Query: 132 VLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDH 191
L P F G + + A+ G + + + L R +K+D+
Sbjct: 118 FL------PYDKSRFAYVG------EYIEVAKALGFDNVNPD--RVLHYLHYQRAYKTDY 163
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGEN 251
EL ++ AN ++ H + R G E+ + + + G YT I A E+
Sbjct: 164 ELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASR--QGDNDVPYTSIVALNEH 221
Query: 252 SAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQS-LIYNAV 310
+++LHY + ++ L+D GA Y Y +DIT ++ G S + AV
Sbjct: 222 ASILHYMQC---DTVAPKESRSFLIDAGANYHGYAADITRTYAQEGVHNSAMFRDLIQAV 278
Query: 311 LKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLG 370
K +++++KPGV + D+H LA I + L G++ E++ + F PHG+G
Sbjct: 279 DKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEMGITRTFFPHGIG 338
Query: 371 HFLGIDTHDPGGYPK 385
HFLG+ HD GG
Sbjct: 339 HFLGLQVHDVGGLVN 353
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 408 bits (1050), Expect = e-141
Identities = 111/392 (28%), Positives = 176/392 (44%), Gaps = 26/392 (6%)
Query: 11 KVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAY 70
++ ++ + R+ ++ ++ L+ E TR D +RQ S F Y
Sbjct: 2 EISRQEFQRRRQALVEQMQPG---------SAALIFAAPEVTR-SADSEYPYRQNSDFWY 51
Query: 71 LFGVREPGFYGAI---DIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTD 127
G EP + D S+LF +W G+ EK V+
Sbjct: 52 FTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFS 111
Query: 128 EIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFE------TELNTLHPIL 181
EI L G +++ G ++ A + + + P++
Sbjct: 112 EINQQLYQLLN--GLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCS 241
E R+FKS E+A+++ A +I++ AH M+K R GM EY +E H + G R+ S
Sbjct: 170 HEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHE-FNRHGARYPS 228
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
Y I +GEN +LHY N+ DGD+ L+D G EY+ Y DIT +FPVNGKFT
Sbjct: 229 YNTIVGSGENGCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLG 361
Q IY+ VL++ + +PG +++ +I++ L K G++ G+VDE++A
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 362 AVFMPHGLGHFLGIDTHDPGGYPKVYMIKLTA 393
F HGL H+LG+D HD G Y + L
Sbjct: 345 RPFFMHGLSHWLGLDVHDVGVYGQDRSRILEP 376
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 395 bits (1016), Expect = e-135
Identities = 73/371 (19%), Positives = 148/371 (39%), Gaps = 28/371 (7%)
Query: 16 LYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYF-AYLFGV 74
LY + + R+ + R V+ G+ + ++ D F+ F A+L +
Sbjct: 7 LYAEHIATLQKRTREII---ERENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVI 63
Query: 75 REPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQ 134
P + + ++F + + V P Y+ + + + ++ D++ +L
Sbjct: 64 DNPHCWIVANGTDKPKLIFYRPVDFWHKVPDE---PNEYWADYFDIELLVKPDQVEKLLP 120
Query: 135 GHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELA 194
++ L + E + R +K+ +ELA
Sbjct: 121 YD----KARFAYIGEYLEVAQALGFELMNPEP----------VMNFYHYHRAYKTQYELA 166
Query: 195 LIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYTCICATGENSAV 254
++ AN I+ + H G E++++ +L T Y I A EN A+
Sbjct: 167 CMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQ--HSENDNPYGNIVALNENCAI 224
Query: 255 LHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAH 314
LHY H + L+D GA + Y +DIT ++ G+ + + + +
Sbjct: 225 LHYTH---FDRVAPATHRSFLIDAGANFNGYAADITRTYDFTGEGEFAE--LVATMKQHQ 279
Query: 315 NAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLG 374
A++N + PG + ++H + + ++L ++ + DE++A + + F PHGLGH +G
Sbjct: 280 IALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIG 339
Query: 375 IDTHDPGGYPK 385
+ HD GG+
Sbjct: 340 LQVHDVGGFMA 350
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 143 bits (364), Expect = 1e-39
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 25/220 (11%)
Query: 162 AQFEGM-EKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKE 220
+ + E + E ++ + R+ K+D E+ +++ A I+ A ++ R G+ E
Sbjct: 104 SSYSAHKEAIDAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSE 163
Query: 221 YQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGA 280
++ S L G S+ I A+G SA+ H +++ E GD LD GA
Sbjct: 164 IEV-SNELEFFMRKQGATSSSFDIIVASGLRSALPH----GVASEKVIETGDFVTLDFGA 218
Query: 281 EYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 340
Y+ Y SDIT + V G+ + IYN VL+A +N +K G+ + L I E
Sbjct: 219 YYKGYCSDITRTIAV-GEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYITE 277
Query: 341 SLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDP 380
G F H GH +G++ H+
Sbjct: 278 -----------------KGYGEYF-GHSTGHGIGLEIHEA 299
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 145 bits (367), Expect = 2e-39
Identities = 43/401 (10%), Positives = 109/401 (27%), Gaps = 68/401 (16%)
Query: 18 FINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREP 77
F R + L E + + + G + +L P
Sbjct: 13 FKKR---IELLYSKYNEFEGSPNSLLFVLGSSN------AENPYQKTTILHNWLLSYEFP 63
Query: 78 GFYGAIDIATGKSILF------APRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVG 131
+ ++ A L ++ ++ + ++
Sbjct: 64 A---TLIALVPGKVIIITSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFD 120
Query: 132 VLQGHYKEPGKPLLFLLH-GLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSD 190
+ GK + P +++ E + + LS+ K
Sbjct: 121 DVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWEVKDV 180
Query: 191 HELALIQFANDISSEA-------------------HVEVMKKTRVGMK--------EYQM 223
+E A + ++ S + + ++ K + +
Sbjct: 181 NEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDL 240
Query: 224 ESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQ 283
++ + +Y+ I +G+ + A + L G Y
Sbjct: 241 SALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRV--SAR-STNDQLYGNGCILASCGIRYN 297
Query: 284 FYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVI-NAMKPGVCWVDMHKLAEKIILESL 342
Y S+IT +F ++ + + + Y+ +L ++ N +KPG ++++ + I
Sbjct: 298 NYCSNITRTFLIDP--SEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYI---- 351
Query: 343 KKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
+K + +G +G++ D
Sbjct: 352 EKTKPELVP------------NFTKNIGSLIGLEFRDSNFI 380
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 141 bits (359), Expect = 6e-39
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ F + + + + + + R+ K + E+ I+ A +IS A +E +++ R GM
Sbjct: 106 SLFRRISSAFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMT 165
Query: 220 EYQMESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMG 279
E ++ + L +T G ++ I A+G SA+ H +D+ E GD+ ++D G
Sbjct: 166 EKEI-AALLEYTMRKEGAEGVAFDTIVASGCRSALPH----GKASDKVVERGDVIVIDFG 220
Query: 280 AEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIIL 339
A Y+ Y +DIT + G+ + + +++ VL+A + K GV + +A + I
Sbjct: 221 ATYENYCADITRVVSI-GEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIR 279
Query: 340 ESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDP 380
E G F H LGH +G++ H+
Sbjct: 280 E-----------------KGYGEFF-GHSLGHGIGLEVHEG 302
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 139 bits (353), Expect = 4e-38
Identities = 56/210 (26%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 171 ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHH 230
E + ++ + R+ KS+ E+ +I+ A +I+ +A + +++ G KE ++ + + +
Sbjct: 111 IKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREV-AAKVEY 169
Query: 231 TYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDIT 290
G ++ I A+G SA+ H +D+ E GD+ ++D+GA YQ Y SDIT
Sbjct: 170 LMKMNGAEKPAFDTIIASGYRSALPH----GVASDKRIERGDLVVIDLGALYQHYNSDIT 225
Query: 291 CSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG 350
+ V G Q IY VL+A + + KPG+ ++ +A II E
Sbjct: 226 RTIVV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAE---------- 274
Query: 351 NVDEMMAARLGAVFMPHGLGHFLGIDTHDP 380
G F H LGH +G++ H+
Sbjct: 275 -------YGYGEYF-NHSLGHGVGLEVHEW 296
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 138 bits (350), Expect = 2e-37
Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 26/216 (12%)
Query: 167 MEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM 226
+ +L + R+ K E+ + A H V G E Q+ +
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAA- 188
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQF-Y 285
+ + G ++ I +G + A H +DR + GD+ ++D+G Y+ Y
Sbjct: 189 DIAEAIVAEGHSAVAFV-IVGSGPHGADPH----HGYSDRKLQVGDIVVVDIGGTYEPGY 243
Query: 286 GSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKG 345
SD T ++ + G + D + Y+A+ +A A ++A++PGV + A ++ +
Sbjct: 244 YSDSTRTYSI-GDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLAD----- 297
Query: 346 GVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPG 381
A L F H GH +G+ H+
Sbjct: 298 ------------AGLAEYF-VHRTGHGIGLCVHEEP 320
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 136 bits (346), Expect = 4e-37
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 167 MEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESM 226
M+ + L ++ E R+ K E+ +++ A+ I+ + E++ +GMKE ++ ++
Sbjct: 111 MKLGKFTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKEREL-AL 169
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYG 286
+ + ++ I A+GEN+A H P +R GD+ +LD GA ++ Y
Sbjct: 170 KIEL-LIRELSDGIAFEPIVASGENAANPH----HEPGERKIRKGDIIILDYGARWKGYC 224
Query: 287 SDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGG 346
SDIT + + G+ IY V A + A++ G+ D+ A ++I +
Sbjct: 225 SDITRTIGL-GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISK------ 277
Query: 347 VMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDP 380
A G F H GH LG+D H+
Sbjct: 278 -----------AGYGEYF-IHRTGHGLGLDVHEE 299
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 137 bits (346), Expect = 1e-36
Identities = 54/403 (13%), Positives = 119/403 (29%), Gaps = 61/403 (15%)
Query: 8 SPPKVPKELYFINREKVLNSLRQHLTETS--RPLHGFVLLQGGEEQTRYCTDHLELFRQE 65
+ ++ + + +L S + + + ++ G + D +
Sbjct: 4 AEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHD------DTNPYQKST 57
Query: 66 SYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKY----MVN 121
+ +L G P + + I + A L K+
Sbjct: 58 ALHTWLLGYEFPS---TLILLEKHRITILT--SVNKANMLTKLAETKGAAADVNILKRTK 112
Query: 122 MVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPIL 181
++ + + + K + + FE ++ E L L
Sbjct: 113 DAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKS-EFNLVDASLGL 171
Query: 182 SECRVFKSDHELALIQFANDISSEAHVEVMK-------KTRVGMKEYQ----MESMFLHH 230
++C K + ELA I+ A+ +S + + + MES+ +
Sbjct: 172 AKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNE 231
Query: 231 TYMYG----------GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGA 280
+ YT I +G + + A D GD+ L +G
Sbjct: 232 AFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPS----AITDDRNLHGDVVLCSLGF 287
Query: 281 EYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILE 340
Y+ Y S++ ++ + S+Q Y+ ++ + + G D++ +I
Sbjct: 288 RYKSYCSNVGRTYLFDP--DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRA 345
Query: 341 SLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
K+ L F+ LG +GI+ +
Sbjct: 346 --KRPD-------------LEPNFV-RNLGAGIGIEFRESSLL 372
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 127 bits (320), Expect = 3e-33
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 30/234 (12%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ + + EL + R+ KS E +I+ I+ V++ +
Sbjct: 130 QNRDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVP 189
Query: 220 EYQM-----ESMFLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMA 274
EY++ ++M + +G N+ H R GD+
Sbjct: 190 EYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAH----NPVTTRKVNKGDIL 245
Query: 275 LLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLA 334
L+ Y + + + + + D ++ ++ H A + +KPG D+ +
Sbjct: 246 SLNCFPMIAGYYTALERTLFL-DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIAREL 304
Query: 335 EKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYM 388
+I L+ + G GH G +H G + +
Sbjct: 305 NEIFLK-----------------HDVLQYR-TFGYGHSFGTLSHYYGREAGLEL 340
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 120 bits (303), Expect = 1e-30
Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 32/235 (13%)
Query: 162 AQFEGMEKF--ETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK 219
+ZK TE + + RV KS E LI+ IS G+
Sbjct: 130 BHRRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVP 189
Query: 220 EYQMESMFLHHTYMYGGCRHCSY------TCICATGENSAVLHYGHAAAPNDRTFEDGDM 273
EY++ ++ + R Y +G N+ H BR Z GD+
Sbjct: 190 EYEV-AIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAH----NPVTBRVVZRGDI 244
Query: 274 ALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKL 333
L+ Y + + + + + I+ H + +KPG D+
Sbjct: 245 LSLNCFPMIFGYYTALERTLFL-ZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASE 303
Query: 334 AEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKVYM 388
+ Z L G GH G+ H G V +
Sbjct: 304 LNBMYRZ-----------------WDLLRYR-TFGYGHSFGVLBHYYGREAGVEL 340
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 89.7 bits (222), Expect = 1e-19
Identities = 43/302 (14%), Positives = 91/302 (30%), Gaps = 36/302 (11%)
Query: 86 ATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLL 145
A G +++ + + +L + PL Q + + V V + + LL
Sbjct: 131 ADGYMVMWDYK----NSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILL 186
Query: 146 F-LLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISS 204
GL + + ++ E+ + + R K E+ ++ A+
Sbjct: 187 RDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACE 246
Query: 205 EAHVEVMKKTRVGMKEYQMESMFL---HHTYMYGGCRHCSYTCICATGENSAVLHYGHAA 261
A ++ R + + + H+ T + A+G S
Sbjct: 247 VAVRKMEDFARSKVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRSNPWFQ---- 302
Query: 262 APNDRTFEDGDMALLDMGAE-YQFYGSDITCSFPVNGKFTSDQSLIYNAVL--KAHNAVI 318
R + ++ D +DI+ S+ + G +IY + +
Sbjct: 303 ECGPRVCQRNEIISFDTDLVGAYGICTDISRSWWI-GDQKPRADMIYAMQHGVEHIRTNM 361
Query: 319 NAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTH 378
+KPGV ++ A +L+ A+ L H +G+
Sbjct: 362 EMLKPGVMIPELS--ANTHVLD-----------------AKFQKQK-YGCLMHGVGLCDE 401
Query: 379 DP 380
P
Sbjct: 402 WP 403
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 58.3 bits (141), Expect = 1e-09
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 15/157 (9%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM------ESMFLHHTYMYGGCRHCS 241
L + A + A V R G+ ++ + L G
Sbjct: 42 TESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGIGFP- 100
Query: 242 YTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTS 301
+ NS HY D ++ D+ +D G D +
Sbjct: 101 -AGMSM---NSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENL-- 154
Query: 302 DQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKII 338
+ L+ A + I ++ V D+ + ++I
Sbjct: 155 -EPLL-VAAREGTETGIKSLGVDVRVCDIGRDINEVI 189
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 58.0 bits (140), Expect = 2e-09
Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQM----ESM---FLHHTYMYGGCRHC 240
S+ + A + + VM + GM ++ E + + G
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP 220
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFT 300
T N+ HY A + + D+ +D G D + N K+
Sbjct: 221 --TGCSL---NNCAAHY-TPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKY- 273
Query: 301 SDQSLIYNAVLKAHNAVINAMKPGVCWVD 329
+L+ AV A N I V D
Sbjct: 274 --DTLL-KAVKDATNTGIKCAGIDVRLCD 299
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 56.9 bits (138), Expect = 6e-09
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 241 SYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGS-DITCSFPVNGKF 299
S+ I +TG A++HY +RT ++ L+D GA+Y G+ D+T +
Sbjct: 380 SFPTISSTGPTGAIIHY-APVPETNRTLSLDEVYLIDSGAQY-KDGTTDVTRTMHF-ETP 436
Query: 300 TSDQSLIYNAVLKAHNAVINA 320
T+ + + VLK H AV A
Sbjct: 437 TAYEKECFTYVLKGHIAVSAA 457
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 3e-08
Identities = 55/384 (14%), Positives = 104/384 (27%), Gaps = 134/384 (34%)
Query: 8 SPPKVPKELYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHLELFRQESY 67
K Y ++R + LRQ L E RP VL+ G
Sbjct: 122 DNQVFAK--YNVSRLQPYLKLRQALLEL-RP-AKNVLIDGV------------------- 158
Query: 68 FAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTD 127
G GK+ + LSY + M +++
Sbjct: 159 ---------LGS--------GKTWVALDVC-------------LSYKVQCKMDFKIFW-- 186
Query: 128 EIVGVLQGHYKEPG---KPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLHPILSEC 184
+ + + P + L LL+ + D N S+ + + ++++ L
Sbjct: 187 --LNL--KNCNSPETVLEMLQKLLYQI--DPNWTSRS---DHSSNIKLRIHSIQAELR-- 235
Query: 185 RVFKS-DHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSYT 243
R+ KS +E L+ ++ + C+
Sbjct: 236 RLLKSKPYENCLL-VLLNVQNAKAWNAFN----------------------LSCK----- 267
Query: 244 CICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQ 303
I T V + AA + + M T D+
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMT------------------------LTPDE 302
Query: 304 SLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAV 363
+ +LK + + V + II ES++ G N + +L +
Sbjct: 303 VK--SLLLKYLDCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 364 FMPHGLGHFLGIDTHDPGGYPKVY 387
++ +P Y K++
Sbjct: 359 IE-------SSLNVLEPAEYRKMF 375
Score = 36.4 bits (83), Expect = 0.017
Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 51/221 (23%)
Query: 1 MASSSSLSPPKVPKE-LYFINREKVLNSLRQHLTETSRPLHGFVLLQGGEEQTRYCTDHL 59
+ S + K PKE I + L+ L E LH ++ + +D L
Sbjct: 411 LHKYSLVE--KQPKESTISIP--SIYLELKVKL-ENEYALHR-SIVDHYNIPKTFDSDDL 464
Query: 60 ELFRQESYFAYLFGVREPGFYGAIDIATGKSILFAPRLPPDYAVWLG-KIKPLSYFQEKY 118
+ YF G + +I + + + D+ +L KI+ +
Sbjct: 465 IPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLDFR-FLEQKIR-----HDST 512
Query: 119 MVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETELNTLH 178
N + L+ YK ++ D++ K+E +N +
Sbjct: 513 AWNASGSILNTLQQLK-FYKP------YI-----CDNDP-----------KYERLVNAIL 549
Query: 179 PILSEC--RVFKSDHELALIQFA-----NDISSEAHVEVMK 212
L + + S + L++ A I EAH +V +
Sbjct: 550 DFLPKIEENLICSKY-TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 32.5 bits (73), Expect = 0.28
Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 60/196 (30%)
Query: 121 NMVYYTDEIV-------GVLQGHYKEPGKPLLFLLHGLNTDSNNFSKPAQFEGMEKFETE 173
+++ +V +++ KE + + E K E
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKE----STISIPSI-----------YLELKVKLE-N 441
Query: 174 LNTLHPILSEC----RVFKSDHELALIQ---FANDISSEAHVEVMKKTRVGMKEYQMESM 226
LH + + + F SD + F + I H +K + +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--H---LKNIEHPERMTLFRMV 496
Query: 227 FLHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYG 286
FL ++ RH S + +L+ + +FY
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGS-------------------------ILNTLQQLKFYK 531
Query: 287 SDITCSFPVNGKFTSD 302
I + P + +
Sbjct: 532 PYICDNDPKYERLVNA 547
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 48.8 bits (117), Expect = 1e-06
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 192 ELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGCRHCSY-TCICATGE 250
+ + A +I+ + + +K R GM ++ GG ++ +
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGG--KPAFPVNLSI--- 56
Query: 251 NSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYNAV 310
N HY + ++GD +D+G + +D + V + L+ A
Sbjct: 57 NEIAAHY-TPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEE---DELM-EAA 111
Query: 311 LKAHNAVINAMKPGVCWVDMHKLAEKII 338
+A NA I+ + GV ++ K E I
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEI 139
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 44.4 bits (105), Expect = 4e-05
Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 23/168 (13%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMK---------EYQME---SMFLHHTYMYG 235
D + + DI++ +++ + G+ ME +F M
Sbjct: 20 AEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKK 79
Query: 236 GCRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
G T I N+ V H+ + D ++GD+ +D+G + +++ +F V
Sbjct: 80 GIAFP--TSISV---NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVV 134
Query: 296 NGKFTSDQS-----LIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKII 338
+ + + +I A A + +KPG + + K+
Sbjct: 135 DVAQGTQVTGRKADVI-KAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 56/331 (16%), Positives = 100/331 (30%), Gaps = 121/331 (36%)
Query: 73 GVREPG----FYGAIDIATGKSILFAPRLPPDYAVWLGKIKPLSYFQEKYMVNMVYYTDE 128
G +E G Y A + + + A ++F++ Y +++ +
Sbjct: 1625 GSQEQGMGMDLYKTSKAA--QDVW-------NRA--------DNHFKDTYGFSIL----D 1663
Query: 129 IVGVLQGHYKEPGKPLLFLLHGL-------NTDSNNFSKPAQFEGMEKFETELNTLHPIL 181
IV L G N + F +G K E ++
Sbjct: 1664 IV-------INNPVNLTIHFGGEKGKRIRENYSAMIFETIV--DGKLKTEKIFKEINEHS 1714
Query: 182 SECRVFKSDHE-LALIQF---ANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMYGGC 237
+ F+S+ L+ QF A + +A E +K G+ ++ F G
Sbjct: 1715 TSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK--GLI--PADATF-------AG- 1761
Query: 238 RHCSYTCICATGENSA---------------VLHY-G---HAAAPNDRT-FEDGDMALLD 277
H S GE +A V+ Y G A P D + M ++
Sbjct: 1762 -H-SL------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 278 MG--------AEYQFYGSDIT------CSFPVNGKFTSDQSLIYNA-----V----LKAH 314
G Q+ + VN YN V L+A
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVE-IVN----------YNVENQQYVAAGDLRAL 1862
Query: 315 NAVINAMKP-GVCWVDMHKLAEKIILESLKK 344
+ V N + + +D+ +L + + LE ++
Sbjct: 1863 DTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 33.1 bits (75), Expect = 0.22
Identities = 34/185 (18%), Positives = 49/185 (26%), Gaps = 72/185 (38%)
Query: 215 RVGM-KE-YQMESMF--------LHHTYMYGGCRHCSYTCICATGENSAVLHYGHAAAPN 264
GM + Y+ H YG S I + +H+G
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGF----SILDIVINNPVNLTIHFGGEKGKR 1683
Query: 265 DR------TFE---DGDMALLDMGAEYQFYGSDITCSFPVNGKFTSDQSLIYN------A 309
R FE DG + + E + + T F S++ L+ A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--------FRSEKGLLSATQFTQPA 1735
Query: 310 VLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGL 369
+ L EK E LK G++ D A
Sbjct: 1736 LT---------------------LMEKAAFEDLKSKGLI--PADATFA------------ 1760
Query: 370 GHFLG 374
GH LG
Sbjct: 1761 GHSLG 1765
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 35.6 bits (83), Expect = 0.020
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
KS E+ ++ + ++ ++ H + + G+ + +E ++ Y G
Sbjct: 5 KSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEV--FVRDFIESHGGVAAQIGYEG 62
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN 296
++ C N + H P + +DGD+ +DM + + SD S+ V
Sbjct: 63 YKYA----TC-CSINDEICH----GFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVV- 112
Query: 297 GKFTSD-QSLI---YNAVLKAHNAVINAMKPG 324
G+ T + L+ A+ I + G
Sbjct: 113 GESTPEIDRLMEVTKKALYLG----IEQAQVG 140
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 35.3 bits (82), Expect = 0.026
Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 27/124 (21%)
Query: 186 VFKSDHELALIQFANDISSEAHVEVMKKTRVGM-------------KEYQMESMFLHHTY 232
++ EL + A I A V V + G+ +E FL
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLG--- 89
Query: 233 MYGGCRHCSYTCICATGENSAVLHYGHAAAPND-RTFEDGDMALLDMGAEYQFYGSDITC 291
Y G IC++ N V+H P+ DGD+ +D GA + D
Sbjct: 90 -YHGFPA----SICSS-VNDQVVH----GIPSATAVLADGDLVSIDCGAILDGWHGDSAW 139
Query: 292 SFPV 295
+F V
Sbjct: 140 TFAV 143
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 31.7 bits (73), Expect = 0.31
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
K+ E+ ++ A + A EV K G + +E+ L YGG
Sbjct: 17 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVET--LVLEIFKKLRVKPAFKGYGG 74
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPN-DRTFEDGDMALLDMGAEYQFYGSDITCSFPV 295
++ TC+ N V+H P ++ F++GD+ +D+GA YQ D ++ V
Sbjct: 75 YKYA--TCVSV---NEEVVH----GLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV 125
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 30.6 bits (70), Expect = 0.70
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 32/153 (20%)
Query: 188 KSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYM-----------YGG 236
K++ EL ++ I ++ + T+ G+ ++++ +
Sbjct: 4 KTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDN--IAKELFEEYGAISAPIHDEN 61
Query: 237 CRHCSYTCICATGENSAVLHYGHAAAPNDRTFEDGDMALLDMGAEYQFYGSDITCSFPVN 296
C N V H P+ R +GD+ +D+ A Y +D SF V
Sbjct: 62 FPGQ----TC-ISVNEEVAH----GIPSKRVIREGDLVNIDVSALKNGYYADTGISFVV- 111
Query: 297 GKFTSD--QSLI---YNAVLKAHNAVINAMKPG 324
G+ Q + A A I +KPG
Sbjct: 112 GESDDPMKQKVCDVATMAFENA----IAKVKPG 140
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 30.0 bits (67), Expect = 1.1
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 324 GVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY 383
GVC + L G N + + + + H LGH G + HDP G
Sbjct: 152 GVCP-KAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAE-HDPDGL 209
Query: 384 PK 385
+
Sbjct: 210 AE 211
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.1 bits (67), Expect = 1.2
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMK-----EYQMESMFLHHTYMYGGCRH 239
++ +D I AN + + + K M + + GGC H
Sbjct: 300 SLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTH 359
Query: 240 -C-----SYTCICATG 249
C +YTC C TG
Sbjct: 360 LCLPSGQNYTCACPTG 375
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA
complex, mitosis, cell division, kinetochore microtubule
attachment; 3.32A {Homo sapiens}
Length = 101
Score = 28.5 bits (63), Expect = 1.3
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 151 LNTDSNNFSKPAQFEGMEKFETELNTLHPILSECRVFKSDHELALIQFANDISSEAHVEV 210
L+ ++ + E + + + L+ + SE + K D + L + + ++ ++
Sbjct: 18 LDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDK--ARLENQEGIDF 75
Query: 211 MKKTRVGMKEYQMESMFLHHTY-MYG 235
+K T+V M++ M+ M + + YG
Sbjct: 76 IKATKVLMEKNSMDIMKIREYFQKYG 101
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 26.2 bits (58), Expect = 3.0
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
G C C S C CA G
Sbjct: 9 GDCDQFCHEEQNSVVCSCARG 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 4.3
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 5 SSLSPPKVP-KELYFINREKVLNSLRQHLTETSRPLHGFVLLQG 47
+ L VP + + F+ R+K++++++Q L + + G+V + G
Sbjct: 112 TVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGE-PGWVTIYG 154
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 28.0 bits (63), Expect = 4.4
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 136 HYKEPG--KPLLFLLHGLNTDSNNF 158
H+ +P PL+ L+HGL ++
Sbjct: 8 HFAKPTARTPLVVLVHGLLGSGADW 32
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 28.3 bits (63), Expect = 4.6
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 13/46 (28%)
Query: 345 GGVMVGNVDEMMAARLGAVFMPHGL-------GHFLGIDTHDPGGY 383
G +G + + + G GH G GG+
Sbjct: 116 SGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISG------GGF 155
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 28.3 bits (63), Expect = 4.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 107 KIKPLS---YFQEKYMVNMVYYTDEIVGVLQGHYKEPGKPLLFLLHGL 151
P+ YF+ V + T + + + P+L LLHG
Sbjct: 2 DFSPVPWSQYFESMEDVEVENETGKDT--FRVYKSGSEGPVLLLLHGG 47
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.8 bits (57), Expect = 4.6
Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
GGC C C CA G
Sbjct: 6 GGCDQFCREERSEVRCSCAHG 26
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 28.2 bits (62), Expect = 5.6
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 185 RVFKSDHELALIQFANDISSEAHVEVMKKTRVGMKEYQMESMFLHHTYMY---GGCRH-C 240
V+ +D + I+ + S+E V + + + + + GGC H C
Sbjct: 533 YVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLC 592
Query: 241 -----SYTCICATG 249
C C G
Sbjct: 593 LYRPQGLRCACPIG 606
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 27.5 bits (61), Expect = 6.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 138 KEPGKPLLFLLHGLNTDSNNF 158
K+ KP+L LLHG + +
Sbjct: 34 KDTSKPVLLLLHGTGGNELDL 54
>3mlq_E Transcription-repair coupling factor; tudor,
transferase-transcription complex; 2.91A {Thermus
thermophilus}
Length = 71
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 367 HGLGHFLGIDTHDPGGYPKVYM 388
HG+G +LG++T + G + Y+
Sbjct: 14 HGVGQYLGLETREVLGVKRDYL 35
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 27.5 bits (62), Expect = 7.1
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 309 AVLKAHNAVINAMKPGVCWVDMH----KLAEKIILESLKKGGVMV 349
V N V+ + G ++DM + + I +GG +
Sbjct: 73 EVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFL 117
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 27.6 bits (61), Expect = 8.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 143 PLLFLLHGLNTDSNNFSKPAQFE 165
P+L+ L GL NF + A +
Sbjct: 48 PVLYWLSGLTCSDENFMQKAGAQ 70
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 27.3 bits (61), Expect = 8.4
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 362 AVFMPHGLGHFLGIDTHDPGG 382
AV M H LGH LGI HD G
Sbjct: 137 AVTMAHELGHNLGI-HHDTGS 156
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 27.5 bits (62), Expect = 8.6
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 329 DMHKLAEKI--ILESL--KKG---GVMVGNVDE----MMAA-RLGAVFMP--HGLG 370
D+ ++K KG + + + + M+ +LGA+ +P H L
Sbjct: 91 DLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 26.2 bits (58), Expect = 8.6
Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 6/21 (28%)
Query: 235 GGCRH-C-----SYTCICATG 249
GGC H C C CA G
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPG 82
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation,
oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Length = 518
Score = 27.6 bits (61), Expect = 8.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 345 GGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTH-DPGGY 383
G +G V + + + P G +G+ H GGY
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGY 163
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 309 AVLKAHNAVINAMKPGVCWVDMH----KLAEKIILESLKKGGVMV 349
++ + V+ ++PG C+VDM ++ + +GG +
Sbjct: 102 DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL 146
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 27.1 bits (61), Expect = 9.3
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 309 AVLKAHNAVINAMKPGVCWVDMH----KLAEKIILESLKKGGVMV 349
V + V+ + G +VDM +++I + + KGG +
Sbjct: 73 EVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFL 117
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 27.2 bits (61), Expect = 9.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 309 AVLKAHNAVINAMKPGVCWVDMH----KLAEKIILESLKKGGVMV 349
+V+ V+ + G ++DM + + KI KGG V
Sbjct: 93 SVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFV 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,206,100
Number of extensions: 379429
Number of successful extensions: 1103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 82
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)