BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016074
(396 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana
GN=ROPGEF1 PE=1 SV=2
Length = 548
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 9/267 (3%)
Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
++E MKERF+KLLLGED++GG GV TALA+SNAITNL+A+VFGELW+LEPL ++K+ W
Sbjct: 90 EIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMW 149
Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
+RE++WLL ++ +VEL+P+ Q G T EIM + R+D++ NLPAL+KLD+MLI+ LD
Sbjct: 150 RRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKLDAMLIDMLD 209
Query: 240 SMVNTEFWYAEVGSRAEGRNK-------STRESKRWWLPLAQVPASGLSDSGRKKMLSQC 292
+ +TEFWY + G +K S R+ +WWLP +VP +GLS+ RKK L QC
Sbjct: 210 AFSDTEFWYTDRGIVLGDCDKDSYNSPASVRQEDKWWLPCPKVPPNGLSEEARKK-LQQC 268
Query: 293 R-VVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMIN 351
R Q+ KAA +IN VL EM +P + LPKSGK LGE +Y+ LTA S +++
Sbjct: 269 RDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLD 328
Query: 352 FLNLKSEHSALEAINKLEAAVFTWKER 378
L+L SEH LE N++EAAV W+++
Sbjct: 329 CLDLSSEHQTLEIANRIEAAVHVWRQK 355
>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana
GN=ROPGEF8 PE=1 SV=1
Length = 523
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 182/261 (69%), Gaps = 1/261 (0%)
Query: 120 DVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRW 179
D+E MK+RF+KLLLGED++GG GV++ALALSNAITNLAAS+FGE KL+P+ ++R++RW
Sbjct: 85 DMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARW 144
Query: 180 QREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLD 239
++E+DWLLS T+ +VE VP++Q + +G EIM + R D+ MN+PAL+KLD+MLI+TLD
Sbjct: 145 KKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLD 204
Query: 240 SMV-NTEFWYAEVGSRAEGRNKSTRESKRWWLPLAQVPASGLSDSGRKKMLSQCRVVYQV 298
+ + EFWY S + ++ R + +WWLP +VP GLS+ R+ + Q V QV
Sbjct: 205 NFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQV 264
Query: 299 FKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE 358
KAA +IN VL EM +P D LPK+G+ SLG+ +YK +T E + + L++ +E
Sbjct: 265 QKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLDMSTE 324
Query: 359 HSALEAINKLEAAVFTWKERI 379
H L+ N++EA+V WK ++
Sbjct: 325 HKVLDLKNRIEASVVIWKRKL 345
>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana
GN=ROPGEF2 PE=1 SV=2
Length = 485
Score = 251 bits (642), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 140/341 (41%), Positives = 205/341 (60%), Gaps = 29/341 (8%)
Query: 57 GCLTDSLDDDDSSCSSSKDAFGSFSSKWSTMKRVEHGSEDWGPSESPNHYHLKQKPAYAF 116
G +D +D+ S C+ + S W + S + S P + LK
Sbjct: 55 GGFSDQIDETSSFCTEAS------PSDWPVLTE----SNNSASSNFPTVFDLKHNQIETD 104
Query: 117 RFLDV--------ETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKL 168
L V ETMKERFSKLLLGED++G GV TA+ +SNAITNL A+VFG+ +L
Sbjct: 105 EHLAVQEISEPELETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL 164
Query: 169 EPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLPALQ 228
EPL E+K+ W+REM+ LLS +++ E +P QN +NG T+E+M + RADI++NLPAL+
Sbjct: 165 EPLEIEQKTTWKREMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALR 224
Query: 229 KLDSMLIETLDSMVNTEFWYAEVGSRAEGRNKST----------RESKRWWLPLAQVPAS 278
KLDSML+E LDS TEFWYAE GS + +S R+ ++WWLP+ VP
Sbjct: 225 KLDSMLMEALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQ 284
Query: 279 GLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKV 338
GLS+ RK++ S+ Q+ KAA +IN ++L EM +P LPKSGK S G+ +Y+
Sbjct: 285 GLSEKARKQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRH 344
Query: 339 LTAES-ISSGEMINFLNLKSEHSALEAINKLEAAVFTWKER 378
+T+ S ++++ L + SEH AL+ +++EA+++TW+ +
Sbjct: 345 MTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRK 385
>sp|Q55G87|CANB1_DICDI Calcineurin subunit B type 1 OS=Dictyostelium discoideum GN=cnbA
PE=1 SV=1
Length = 180
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 218 ADIHMNLP--ALQKLDSMLIETLDSMVNTEFWYAE-VGSRAEGRNKSTRESK-RWWLPLA 273
D +++P AL L +I+ D + E + E VG+ A +K T+E K ++ +
Sbjct: 47 TDEFLSIPDLALNPLLERVIQIFDQNKDNEIEFFEFVGTLATLSHKGTKEDKLKFLFQIY 106
Query: 274 QVPASGLSDSGRKKMLSQCRVVYQVFK--AAKSINENVLLEMPVPTIIKDVLPKSGKTSL 331
+ G +G ++QV K ++N+ L ++ TII+ K GK S
Sbjct: 107 DIDCDGFISNGE---------LFQVLKMMVGTNLNDVQLQQIVDKTIIEGDYDKDGKISF 157
Query: 332 GEELYKVLTAESISSGEMIN 351
E ++ + E I +N
Sbjct: 158 DEFIHMIGNQEGIEEKLSVN 177
>sp|Q1Q9M0|PUR5_PSYCK Phosphoribosylformylglycinamidine cyclo-ligase OS=Psychrobacter
cryohalolentis (strain K5) GN=purM PE=3 SV=1
Length = 349
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 100 SESPNHYHLKQKPAYAFRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITN--- 156
+E P Y Q Y V ++E ++++ GE++ G V ALA S A +N
Sbjct: 143 AEMPGMY---QDDDYDLAGFCVGVVEE--AEVITGENVAEGD--VLIALASSGAHSNGYS 195
Query: 157 LAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKA 216
L V E+ ++ + Q D L++PT V+ + A Q+ L M+
Sbjct: 196 LVRKVI-EVSGVDVTSSNEQLDGQSIQDALMAPTRIYVKAIKALQDTLGSSALHAMSHIT 254
Query: 217 RADIHMNLPALQKLDSMLIETLDSMVNTEFW 247
+ NLP +L ETL + ++T W
Sbjct: 255 GGGLTDNLP------RVLPETLAASIDTNSW 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,227,577
Number of Sequences: 539616
Number of extensions: 5790268
Number of successful extensions: 15978
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15953
Number of HSP's gapped (non-prelim): 25
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)