Query 016074
Match_columns 396
No_of_seqs 89 out of 115
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03759 PRONE: PRONE (Plant-s 100.0 3E-156 7E-161 1127.2 14.2 272 118-394 2-279 (365)
2 PF09539 DUF2385: Protein of u 48.2 2 4.4E-05 36.8 -2.8 30 159-188 10-40 (96)
3 KOG0938 Adaptor complexes medi 43.2 17 0.00037 38.1 2.3 40 161-225 260-299 (446)
4 PF10236 DAP3: Mitochondrial r 40.5 33 0.00073 33.4 3.8 83 285-367 76-164 (309)
5 PF02169 LPP20: LPP20 lipoprot 34.3 16 0.00035 28.3 0.5 31 137-167 14-44 (92)
6 TIGR02301 conserved hypothetic 32.9 5.1 0.00011 35.7 -2.8 30 159-188 35-65 (121)
7 PF13671 AAA_33: AAA domain; P 27.5 46 0.001 26.8 2.0 58 320-377 4-64 (143)
8 TIGR03578 EF_0831 conserved hy 23.3 66 0.0014 28.0 2.3 33 140-172 11-47 (96)
9 KOG2379 Endonuclease MUS81 [Re 21.4 1.9E+02 0.0042 31.4 5.7 80 277-368 357-450 (501)
10 PF14189 DUF4312: Domain of un 21.4 73 0.0016 27.1 2.2 63 140-223 9-75 (85)
11 PF15172 Prolactin_RP: Prolact 20.2 43 0.00092 26.0 0.5 15 244-258 16-30 (47)
12 PF12867 DinB_2: DinB superfam 20.2 1.4E+02 0.003 22.9 3.3 34 314-347 15-48 (127)
No 1
>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli. Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.
Probab=100.00 E-value=3.1e-156 Score=1127.23 Aligned_cols=272 Identities=52% Similarity=0.893 Sum_probs=218.7
Q ss_pred cchHHHHHHHHhhhhccCCCCCCCCchhhHHHHhhhhhhhHHhhhccccccccCcHHHHhhhhhccceeecccceeEEee
Q 016074 118 FLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELV 197 (396)
Q Consensus 118 ~se~E~MKErFaKLLLGEDMSG~gKGV~tALAiSNAITNL~AtvFGelwrLEPl~~ekK~~WrREmdwLLSv~D~IVElv 197 (396)
.+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus 2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v 81 (365)
T PF03759_consen 2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV 81 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceEEeeccccccccccCchhHHHHHHHHHHHhhcCCCCeeEEeecCCcc------CCCCccccCCCccccc
Q 016074 198 PARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVNTEFWYAEVGSRA------EGRNKSTRESKRWWLP 271 (396)
Q Consensus 198 Ps~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~dtEFWYv~~g~~~------~~r~~~~R~eeKWWLP 271 (396)
|++|++|||+++|||+||||+|||||||||||||+||||+||||+|||||||++|+.+ +.|...+||++|||||
T Consensus 82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~~~~~~~~~~~~~~r~~~KWWLP 161 (365)
T PF03759_consen 82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVADSDSSSSFRRSSQRQEEKWWLP 161 (365)
T ss_dssp EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT------SHHHHT------CCCTTS-
T ss_pred cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCcccccccCccccCcccccCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999554 3467899999999999
Q ss_pred cccCCCCCCChHHhhhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhhcCCCCCCchhHHHHHHhhccCCChhhhhh
Q 016074 272 LAQVPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMIN 351 (396)
Q Consensus 272 ~p~VP~~GLSe~~RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~ 351 (396)
+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+||||+||+
T Consensus 162 ~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~~~Fspe~ll~ 241 (365)
T PF03759_consen 162 VPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYITSEQFSPEQLLD 241 (365)
T ss_dssp -EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHCTSSS--HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHHhccCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcchhHHHHhhhhhhHHHHHHHhhhhcccCCCCCCCCcc
Q 016074 352 FLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMV 394 (396)
Q Consensus 352 ~ldlsSEH~aLelanRiEAsi~iWrrk~~~~~~~ks~~r~SW~ 394 (396)
||||||||+|||+|||||||||+||||++++ ++|+||+
T Consensus 242 ~ldlssEH~~le~~NRvEAai~vWrrK~~~k-----~~ksSWg 279 (365)
T PF03759_consen 242 CLDLSSEHKALELANRVEAAIYVWRRKICEK-----DSKSSWG 279 (365)
T ss_dssp TS--SSHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccchh
Confidence 9999999999999999999999999999875 6677883
No 2
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=48.24 E-value=2 Score=36.77 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.0
Q ss_pred HhhhccccccccCcH-HHHhhhhhccceeec
Q 016074 159 ASVFGELWKLEPLLE-ERKSRWQREMDWLLS 188 (396)
Q Consensus 159 AtvFGelwrLEPl~~-ekK~~WrREmdwLLS 188 (396)
|-|+|+++-|.||+. +....||.+|.=||.
T Consensus 10 AeiLGalHyLR~LCg~~~~~~WR~~M~~Ll~ 40 (96)
T PF09539_consen 10 AEILGALHYLRNLCGGNEDQYWRDRMQALLD 40 (96)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 679999999999999 889999999987765
No 3
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.19 E-value=17 Score=38.05 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=31.2
Q ss_pred hhccccccccCcHHHHhhhhhccceeecccceeEEeecccccCCCCceEEeeccccccccccCch
Q 016074 161 VFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPKARADIHMNLP 225 (396)
Q Consensus 161 vFGelwrLEPl~~ekK~~WrREmdwLLSv~D~IVElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLP 225 (396)
-|-|+-||--.. +.|+++||| ||| .||.|.-|-+.+| |||
T Consensus 260 ~FHqCV~L~kFn-----------------~eh~IsFvP-----PDG-e~ELMkYr~~enI--nlP 299 (446)
T KOG0938|consen 260 TFHQCVRLDKFN-----------------SEHIISFVP-----PDG-EFELMKYRVTENI--NLP 299 (446)
T ss_pred chheeecccccc-----------------ccceEEEeC-----CCC-ceEeEeeeeccCc--ccc
Confidence 399999886543 468999998 777 5899998888775 666
No 4
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=40.55 E-value=33 Score=33.35 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=62.5
Q ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhh--cCCCCCCchhHHHHHHhhccCCChhh---hhhhcCCCcc-
Q 016074 285 RKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDV--LPKSGKTSLGEELYKVLTAESISSGE---MINFLNLKSE- 358 (396)
Q Consensus 285 RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~es--LPKnGrasLGD~iYr~iT~d~Fspe~---lL~~ldlsSE- 358 (396)
+..+-.|-..+.++||.-.+.|+.+|..|.+...|.-+ -+..+..+|-|.+=..+....+++++ |++.|...++
T Consensus 76 ~~~~~~qP~~a~~~L~~~~~~N~~~L~~i~~s~~~~~~~~~~~~~g~tL~dLv~~g~~~~~~a~~~~~~l~~EL~~~~~~ 155 (309)
T PF10236_consen 76 NPGLYDQPMYAAKWLKKFLKANEELLKKIKLSKDYKWSKRESTPKGSTLLDLVEQGINDPKYAWDVFQALIRELKAQSKR 155 (309)
T ss_pred CCCeeecHHHHHHHHHHHHHHhHHHHHhccccccccccccccCCCCCCHHHHHHhhcccchhHHHHHHHHHHHHHhcccC
Confidence 34456677889999999999999999999999998766 44555688888888888888888854 4566666666
Q ss_pred hhHHHHhhh
Q 016074 359 HSALEAINK 367 (396)
Q Consensus 359 H~aLelanR 367 (396)
.++|=..+-
T Consensus 156 ~PVL~avD~ 164 (309)
T PF10236_consen 156 PPVLVAVDG 164 (309)
T ss_pred CceEEEehh
Confidence 555544443
No 5
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=34.29 E-value=16 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=25.8
Q ss_pred CCCCCCchhhHHHHhhhhhhhHHhhhccccc
Q 016074 137 ITGGRLGVTTALALSNAITNLAASVFGELWK 167 (396)
Q Consensus 137 MSG~gKGV~tALAiSNAITNL~AtvFGelwr 167 (396)
+.|-|.|-..-.|.-||..||+..|+|..-.
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~~~v~~ 44 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQISVVVIS 44 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHheeEEEEe
Confidence 4566777777999999999999999998643
No 6
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=32.94 E-value=5.1 Score=35.71 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.1
Q ss_pred HhhhccccccccCcHHHH-hhhhhccceeec
Q 016074 159 ASVFGELWKLEPLLEERK-SRWQREMDWLLS 188 (396)
Q Consensus 159 AtvFGelwrLEPl~~ekK-~~WrREmdwLLS 188 (396)
|.|+|+++-|.+|+.... ..||.+|.=|+-
T Consensus 35 AeiLG~lHyLR~LC~~~~~~~WR~~M~~Ll~ 65 (121)
T TIGR02301 35 AEILGSLHYLRNLCGSKGDDYWRSRMQALID 65 (121)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 678999999999998655 899999987775
No 7
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=27.52 E-value=46 Score=26.83 Aligned_cols=58 Identities=28% Similarity=0.155 Sum_probs=40.3
Q ss_pred hhhcCCCCCCchhHHHHHHhhccCCChhhhhhhcCC---CcchhHHHHhhhhhhHHHHHHH
Q 016074 320 KDVLPKSGKTSLGEELYKVLTAESISSGEMINFLNL---KSEHSALEAINKLEAAVFTWKE 377 (396)
Q Consensus 320 ~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ldl---sSEH~aLelanRiEAsi~iWrr 377 (396)
+--+|=+||++|.+.+.+..+.-.++.|.+...+.- .+.+...+..+++...+..+-+
T Consensus 4 ~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIR 64 (143)
T ss_dssp EEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999989999998876654 2333334455555555544433
No 8
>TIGR03578 EF_0831 conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.26 E-value=66 Score=28.00 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=29.0
Q ss_pred CCCchhhHHHHhhhhhhhHHhhhc----cccccccCc
Q 016074 140 GRLGVTTALALSNAITNLAASVFG----ELWKLEPLL 172 (396)
Q Consensus 140 ~gKGV~tALAiSNAITNL~AtvFG----elwrLEPl~ 172 (396)
+|||=+=+-|++.|+.++-.+|-. =+.|+||..
T Consensus 11 sgkG~tK~~Afa~als~iq~~v~~~~~~illRIEP~d 47 (96)
T TIGR03578 11 SGKGNTKQLAFASALSKIQKKVMKENPAVLLRIEPVD 47 (96)
T ss_pred EcCCccHHHHHHHHHHHHHHHHHhcCCceEEEEccce
Confidence 688889999999999999999984 489999975
No 9
>KOG2379 consensus Endonuclease MUS81 [Replication, recombination and repair]
Probab=21.41 E-value=1.9e+02 Score=31.38 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=57.1
Q ss_pred CCCCChHHhhhhhhhhhHHHHHHHHHHhhh-------hhhhccCCCch-------hhhhhcCCCCCCchhHHHHHHhhcc
Q 016074 277 ASGLSDSGRKKMLSQCRVVYQVFKAAKSIN-------ENVLLEMPVPT-------IIKDVLPKSGKTSLGEELYKVLTAE 342 (396)
Q Consensus 277 ~~GLSe~~RK~Lq~qrd~~nQIlKAAmAIN-------s~vL~EMeIPe-------~y~esLPKnGrasLGD~iYr~iT~d 342 (396)
..||-+..+|- -.-..-..||.+-++-=+ .+..-.|.+|+ .+.+-++|++.-++||..++.+
T Consensus 357 T~~l~et~s~l-~y~tr~~~~~~~~~~~~~~d~~~~~~q~~~~~~~p~~~~~~f~~F~~~~~K~~~~TV~evf~~qL--- 432 (501)
T KOG2379|consen 357 TRDLGETVSKL-AYLTRGLLQIYASLLLDKEDYRERDDQLKGAMTVPSETELSFSAFQERLSKGKALTVGEVFARQL--- 432 (501)
T ss_pred ecChhHHHHHH-HHHhHHHHHHHHHhhccccccccchhhhhcccCCCCcccccHHHHHHHhhhcccccHHHHHHHHH---
Confidence 35666666664 333334567777666555 78899999995 6889999999999999999863
Q ss_pred CCChhhhhhhcCCCcchhHHHHhhhh
Q 016074 343 SISSGEMINFLNLKSEHSALEAINKL 368 (396)
Q Consensus 343 ~Fspe~lL~~ldlsSEH~aLelanRi 368 (396)
+.+..+|-| .|.+|++|-
T Consensus 433 -------Mqvkg~S~e-rAiAI~d~Y 450 (501)
T KOG2379|consen 433 -------MQVKGMSLE-RAIAIADRY 450 (501)
T ss_pred -------HhccCccHH-HHHHHHHhc
Confidence 445555555 666776664
No 10
>PF14189 DUF4312: Domain of unknown function (DUF4312)
Probab=21.39 E-value=73 Score=27.11 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=43.2
Q ss_pred CCCchhhHHHHhhhhhhhHHhhhcc----ccccccCcHHHHhhhhhccceeecccceeEEeecccccCCCCceEEeeccc
Q 016074 140 GRLGVTTALALSNAITNLAASVFGE----LWKLEPLLEERKSRWQREMDWLLSPTNFMVELVPARQNAANGQTLEIMTPK 215 (396)
Q Consensus 140 ~gKGV~tALAiSNAITNL~AtvFGe----lwrLEPl~~ekK~~WrREmdwLLSv~D~IVElvPs~Q~~~dG~~~EvM~~r 215 (396)
+|||=+-+-|+..|..++-.+|-.+ +.|+||.. |+.+-......--.-+..-.+|
T Consensus 9 sGkG~tKe~Afa~als~vq~~v~~~~~~vlLrIEP~d---------------------V~vl~a~e~~~tEkFL~fF~PR 67 (85)
T PF14189_consen 9 SGKGETKEEAFAKALSQVQKTVLKETNGVLLRIEPVD---------------------VEVLKAKEKVYTEKFLFFFFPR 67 (85)
T ss_pred EcccccHHHHHHHHHHHHHHHHHhcCCCcEEEEcCcE---------------------EEEEEeeeeeeehhhheeeccc
Confidence 6889999999999999998888754 78999975 3444444443444445555666
Q ss_pred cccccccC
Q 016074 216 ARADIHMN 223 (396)
Q Consensus 216 pRsDl~~N 223 (396)
.|...+|-
T Consensus 68 ~R~~Y~Ve 75 (85)
T PF14189_consen 68 ERTRYSVE 75 (85)
T ss_pred ceEEEEEE
Confidence 66555443
No 11
>PF15172 Prolactin_RP: Prolactin-releasing peptide
Probab=20.23 E-value=43 Score=26.00 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=12.4
Q ss_pred CeeEEeecCCccCCC
Q 016074 244 TEFWYAEVGSRAEGR 258 (396)
Q Consensus 244 tEFWYv~~g~~~~~r 258 (396)
.-|||+.+|+..-||
T Consensus 16 dP~WY~gRgiRPvGR 30 (47)
T PF15172_consen 16 DPAWYVGRGIRPVGR 30 (47)
T ss_pred Cchheeccccccccc
Confidence 569999999987664
No 12
>PF12867 DinB_2: DinB superfamily; InterPro: IPR024775 DinB from Bacillus subtilis and related Gram-positive bacteria is a DNA-damage-induced gene and the corresponding protein contains a four helix bundle. This fold is shared by diverse proteins []. This entry represents a DinB-like structural domain found in uncharacterised proteins and putative metal-dependent hydrolases.; PDB: 2YQY_B 2RD9_D 2QNL_A 2HKV_A 1RXQ_B 3CEX_B 2P1A_B.
Probab=20.20 E-value=1.4e+02 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCchhhhhhcCCCCCCchhHHHHHHhhccCCChh
Q 016074 314 PVPTIIKDVLPKSGKTSLGEELYKVLTAESISSG 347 (396)
Q Consensus 314 eIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe 347 (396)
.+|+..+..-|..|+-|+|..++..+..+.+-..
T Consensus 15 ~l~~~~~~~~p~~~~~si~~~~~Hl~~~~~~~~~ 48 (127)
T PF12867_consen 15 GLPEEQLNWKPAPGKWSIGEILGHLADWEEFWLA 48 (127)
T ss_dssp CS-HHHHTSBSSTTSSBHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3588888899999999999999888765444333
Done!