Query 016074
Match_columns 396
No_of_seqs 89 out of 115
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 100.0 1E-155 5E-160 1119.3 16.1 274 116-394 6-280 (365)
2 3kfo_A Nucleoporin NUP133; nuc 37.7 28 0.00095 33.3 4.1 81 287-381 76-171 (288)
3 2oz8_A MLL7089 protein; struct 29.6 38 0.0013 31.9 3.6 48 121-168 64-125 (389)
4 4axd_A Inositol-pentakisphosph 26.6 40 0.0014 34.2 3.4 35 265-303 173-208 (456)
5 1b63_A MUTL; DNA mismatch repa 24.2 99 0.0034 28.9 5.3 29 193-229 133-161 (333)
6 2qq6_A Mandelate racemase/muco 24.0 57 0.002 30.8 3.7 26 143-168 87-113 (410)
7 2fym_A Enolase; RNA degradosom 22.5 64 0.0022 31.1 3.8 48 121-168 67-132 (431)
8 1kl9_A Eukaryotic translation 21.1 72 0.0025 28.0 3.5 37 286-323 139-175 (182)
9 3hrd_B Nicotinate dehydrogenas 20.6 60 0.002 30.7 3.1 30 145-178 294-323 (330)
10 2ptz_A Enolase; lyase, glycoly 18.9 87 0.003 30.5 3.9 49 120-168 68-134 (432)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=100.00 E-value=1.4e-155 Score=1119.26 Aligned_cols=274 Identities=45% Similarity=0.789 Sum_probs=230.3
Q ss_pred cccchHHHHHHHHhhhhccCCCCCCCCchhhHHHHhhhhhhhHHhhhccccccccCcHHHHhhhhhccceeecccceeEE
Q 016074 116 FRFLDVETMKERFSKLLLGEDITGGRLGVTTALALSNAITNLAASVFGELWKLEPLLEERKSRWQREMDWLLSPTNFMVE 195 (396)
Q Consensus 116 ~~~se~E~MKErFaKLLLGEDMSG~gKGV~tALAiSNAITNL~AtvFGelwrLEPl~~ekK~~WrREmdwLLSv~D~IVE 195 (396)
...+|+|||||||||||||||||||||||||||||||||||||||||||+||||||+||||+||||||||||||||||||
T Consensus 6 ~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE 85 (365)
T 2ntx_A 6 RQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVE 85 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEE
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCCceEEeeccccccccccCchhHHHHHHHHHHHhhcCCC-CeeEEeecCCccCCCCccccCCCcccccccc
Q 016074 196 LVPARQNAANGQTLEIMTPKARADIHMNLPALQKLDSMLIETLDSMVN-TEFWYAEVGSRAEGRNKSTRESKRWWLPLAQ 274 (396)
Q Consensus 196 lvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrKLD~MLle~LDsF~d-tEFWYv~~g~~~~~r~~~~R~eeKWWLP~p~ 274 (396)
||||+|++|||+++|||+||||+|||||||||||||+||||+||||+| ||||||++|+....+...|||++|||||+|+
T Consensus 86 ~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~~~~~~~~~r~eeKWWLP~p~ 165 (365)
T 2ntx_A 86 FVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPPVK 165 (365)
T ss_dssp EEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC--------------------CCCEE
T ss_pred eccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCccccCCcccccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999 9999999998776677889999999999999
Q ss_pred CCCCCCChHHhhhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhhcCCCCCCchhHHHHHHhhccCCChhhhhhhcC
Q 016074 275 VPASGLSDSGRKKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVLPKSGKTSLGEELYKVLTAESISSGEMINFLN 354 (396)
Q Consensus 275 VP~~GLSe~~RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ld 354 (396)
|||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+||||+||+|||
T Consensus 166 VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ld 245 (365)
T 2ntx_A 166 VPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAMLD 245 (365)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHTCSSCCHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHhhccCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhhhhHHHHHHHhhhhcccCCCCCCCCcc
Q 016074 355 LKSEHSALEAINKLEAAVFTWKERISEQASGKSPCPNIMV 394 (396)
Q Consensus 355 lsSEH~aLelanRiEAsi~iWrrk~~~~~~~ks~~r~SW~ 394 (396)
|||||+|||+|||||||||+||||++++ ++ ++||+
T Consensus 246 lssEH~~le~anRiEAsi~vWrrk~~~k-~~----kssW~ 280 (365)
T 2ntx_A 246 MSTEHKVLDLKNRIEASVVIWKRKLHTK-DT----KSSWG 280 (365)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCC-CC----CCCCc
Confidence 9999999999999999999999999763 34 45675
No 2
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=37.67 E-value=28 Score=33.32 Aligned_cols=81 Identities=5% Similarity=0.149 Sum_probs=58.3
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhh-cCCCCCCchhHHHHHHhhccCCChhhhhhhcCCCcc----hhH
Q 016074 287 KMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDV-LPKSGKTSLGEELYKVLTAESISSGEMINFLNLKSE----HSA 361 (396)
Q Consensus 287 ~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~es-LPKnGrasLGD~iYr~iT~d~Fspe~lL~~ldlsSE----H~a 361 (396)
-++.|.++.++|+++.. -+|..|.+. + +.-+.+.++|.+.....+|++|++-|-|-.. +.|
T Consensus 76 lI~~Q~~L~~~i~~~~~----------~~~k~~~~~al----~~lf~~~~~kL~~~~~L~~~eLIDLLTLid~~~~F~~A 141 (288)
T 3kfo_A 76 TIDAEKNISNKLKKGEV----------QICKRFKNGSI----REVFNILVEELKSTTVVNLSDLVELYSMLDDEESLFIP 141 (288)
T ss_dssp HHHHHHHHHHHHHHTCS----------CBCGGGSSHHH----HHHHHHHHHHHHSSSCCCHHHHHHHHTTBCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh----------HHHHHhhhHHH----HHHHHHHHHHHHCCCcCCHHHHHHHHHhcCChhHHHHH
Confidence 45789999999997422 255555531 1 3356677888889999999999998877544 458
Q ss_pred HHHhhhhh----------hHHHHHHHhhhh
Q 016074 362 LEAINKLE----------AAVFTWKERISE 381 (396)
Q Consensus 362 LelanRiE----------Asi~iWrrk~~~ 381 (396)
|.++...+ +--.||||=+..
T Consensus 142 LkvL~~~~~~~~~e~~~~l~~lIWRRcilr 171 (288)
T 3kfo_A 142 LRLLSVDGNLLNFEVKKFLNALVWRRIVLL 171 (288)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHHHhh
Confidence 88888773 557899998754
No 3
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=29.55 E-value=38 Score=31.86 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhccCC-------CCCCCCc------hhhHHHHhhhhhhhHHhhhcc-cccc
Q 016074 121 VETMKERFSKLLLGED-------ITGGRLG------VTTALALSNAITNLAASVFGE-LWKL 168 (396)
Q Consensus 121 ~E~MKErFaKLLLGED-------MSG~gKG------V~tALAiSNAITNL~AtvFGe-lwrL 168 (396)
...+++.++.+|.|.| +.+++.| .+...||..|+-.|.|-..|. +|+|
T Consensus 64 ~~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~l 125 (389)
T 2oz8_A 64 ESVFEHEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVL 125 (389)
T ss_dssp HHHHHHHTHHHHTTSCHHHHTTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4556777999999998 4334444 467789999999999988886 5554
No 4
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=26.56 E-value=40 Score=34.23 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=25.0
Q ss_pred CCcc-ccccccCCCCCCChHHhhhhhhhhhHHHHHHHHHH
Q 016074 265 SKRW-WLPLAQVPASGLSDSGRKKMLSQCRVVYQVFKAAK 303 (396)
Q Consensus 265 eeKW-WLP~p~VP~~GLSe~~RK~Lq~qrd~~nQIlKAAm 303 (396)
-.|| |||.+. .+++...-+...+|=|..|.+|++.
T Consensus 173 KPKwGflp~s~----~i~~~~~~k~~~CRfCm~Q~~K~~~ 208 (456)
T 4axd_A 173 KPKCGFLPTSR----FIGKENMLKTSVSRFKMHQLLKLEY 208 (456)
T ss_dssp CCCCCSCCCST----TCCGGGGGGGTSCHHHHHHHHHHHT
T ss_pred cccccccCCCC----CCCcccccccccCHHHHHHHHHhcC
Confidence 3899 999865 2233344456678999999999863
No 5
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=24.19 E-value=99 Score=28.89 Aligned_cols=29 Identities=41% Similarity=0.564 Sum_probs=22.2
Q ss_pred eEEeecccccCCCCceEEeeccccccccccCchhHHH
Q 016074 193 MVELVPARQNAANGQTLEIMTPKARADIHMNLPALQK 229 (396)
Q Consensus 193 IVElvPs~Q~~~dG~~~EvM~~rpRsDl~~NLPALrK 229 (396)
.++..|. ..+.||+++| .||+-|+|+=+|
T Consensus 133 ~~~~~~~--~~~~GT~V~v------~~Lf~n~P~r~k 161 (333)
T 1b63_A 133 NVTVKPA--AHPVGTTLEV------LDLFYNTPARRK 161 (333)
T ss_dssp EEEEEEE--CCCSEEEEEE------ESTTTTCHHHHH
T ss_pred eEeeecc--cCCCCCEEEE------ecccccchhhhh
Confidence 4566664 3578999998 789999999655
No 6
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=23.97 E-value=57 Score=30.81 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.3
Q ss_pred chhhHHHHhhhhhhhHHhhhcc-cccc
Q 016074 143 GVTTALALSNAITNLAASVFGE-LWKL 168 (396)
Q Consensus 143 GV~tALAiSNAITNL~AtvFGe-lwrL 168 (396)
+..+..||+.|+-.|.|-..|. +|+|
T Consensus 87 ~~~A~~aid~AlwDl~gk~~g~Pl~~l 113 (410)
T 2qq6_A 87 VITALSGIETALWDLAGKLQGVPVYRL 113 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHHHHhHhHcCCcHHHH
Confidence 3566789999999999999887 6665
No 7
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=22.54 E-value=64 Score=31.12 Aligned_cols=48 Identities=29% Similarity=0.461 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhccCCCC-------------C----CCCchhhHHHHhhhhhhhHHhhhcc-cccc
Q 016074 121 VETMKERFSKLLLGEDIT-------------G----GRLGVTTALALSNAITNLAASVFGE-LWKL 168 (396)
Q Consensus 121 ~E~MKErFaKLLLGEDMS-------------G----~gKGV~tALAiSNAITNL~AtvFGe-lwrL 168 (396)
+..+++.++.+|+|.|.. | ++.|..+..||+.|+-.+.|-..|. +|+|
T Consensus 67 ~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~l 132 (431)
T 2fym_A 67 VAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEH 132 (431)
T ss_dssp HHHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 444555566666666531 2 4556678899999999999988887 5554
No 8
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=21.08 E-value=72 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=29.7
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhccCCCchhhhhhc
Q 016074 286 KKMLSQCRVVYQVFKAAKSINENVLLEMPVPTIIKDVL 323 (396)
Q Consensus 286 K~Lq~qrd~~nQIlKAAmAINs~vL~EMeIPe~y~esL 323 (396)
++..|.-+.+...||.|-. |..+|.+..||+...+.|
T Consensus 139 ~~~~~~~~~~~~~f~~~~~-~~~~l~~~~~~~~~~~~l 175 (182)
T 1kl9_A 139 DKYKRPGYGAYDAFKHAVS-DPSILDSLDLNEDEREVL 175 (182)
T ss_dssp HHHTCTTHHHHHHHHHHHH-CGGGGTTSSCCHHHHHHH
T ss_pred hhcCCcchhHHHHHHHHhc-ChhhhhhcCCCHHHHHHH
Confidence 3345555678888988887 999999999999888775
No 9
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=20.58 E-value=60 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=22.6
Q ss_pred hhHHHHhhhhhhhHHhhhccccccccCcHHHHhh
Q 016074 145 TTALALSNAITNLAASVFGELWKLEPLLEERKSR 178 (396)
Q Consensus 145 ~tALAiSNAITNL~AtvFGelwrLEPl~~ekK~~ 178 (396)
++|-||.|||-|.. |.-.+=-|+.|||--+
T Consensus 294 ~~~~Ai~nAi~~A~----G~r~~~lP~tpe~i~~ 323 (330)
T 3hrd_B 294 PMIPAVVAAIEDAL----GTRFTHTPIMPKDIVA 323 (330)
T ss_dssp THHHHHHHHHHHHH----TSCCCBSCCCHHHHHH
T ss_pred chHHHHHHHHHHHh----CCccccCCCCHHHHHH
Confidence 46779999998854 7666667999998443
No 10
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=18.86 E-value=87 Score=30.47 Aligned_cols=49 Identities=33% Similarity=0.483 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhhhccCCCC-----------------CCCCchhhHHHHhhhhhhhHHhhhcc-cccc
Q 016074 120 DVETMKERFSKLLLGEDIT-----------------GGRLGVTTALALSNAITNLAASVFGE-LWKL 168 (396)
Q Consensus 120 e~E~MKErFaKLLLGEDMS-----------------G~gKGV~tALAiSNAITNL~AtvFGe-lwrL 168 (396)
-++.+.+.++.+|+|.|.. +++.|..+.+||+.|+-.++|-..|. +|+|
T Consensus 68 av~~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~l 134 (432)
T 2ptz_A 68 AVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRY 134 (432)
T ss_dssp HHHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3556666777777787642 23445677899999999999988886 5654
Done!