Query 016076
Match_columns 395
No_of_seqs 171 out of 1904
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 1E-09 3.6E-14 90.1 3.9 70 269-338 34-104 (137)
2 3b5d_A Multidrug transporter E 98.5 9E-07 3.1E-11 69.9 11.4 69 84-158 34-103 (110)
3 2i68_A Protein EMRE; transmemb 98.5 2E-07 6.9E-12 76.4 7.3 70 84-159 34-104 (137)
4 3b5d_A Multidrug transporter E 98.5 4.8E-07 1.7E-11 71.5 8.7 69 270-338 35-104 (110)
5 3b9w_A Ammonium transporter fa 73.4 30 0.001 33.0 11.4 233 119-395 151-404 (407)
6 1pw4_A Glycerol-3-phosphate tr 55.2 1.3E+02 0.0044 27.7 22.7 18 116-133 195-212 (451)
7 3l1l_A Arginine/agmatine antip 34.6 1.5E+02 0.005 27.8 9.0 45 297-341 386-430 (445)
8 3rko_J NADH-quinone oxidoreduc 30.2 2.4E+02 0.0081 23.5 12.3 32 306-337 127-160 (184)
9 4aps_A DI-OR tripeptide H+ sym 16.6 6.2E+02 0.021 23.3 11.1 160 189-358 46-216 (491)
10 2ks1_B Epidermal growth factor 14.4 47 0.0016 20.8 0.5 24 322-345 21-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.87 E-value=1e-09 Score=90.07 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=53.7
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCceeeeec-hhHHHHHHHHHHHHHhccccchhhhhhHHHHhhhhheeeec
Q 016076 269 YSGIVASGFMVTLISWCVRVKGPLFASVF-SPMMLVVVALAASLILDEMLHLGSLLGATLIVCGLYAVLWG 338 (395)
Q Consensus 269 ~~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li~~G~~l~~~~ 338 (395)
.+++++++++|.++.+++++.+++.+..+ ..+.|+++++++++++||++++.+++|+++|++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566788999999999999999999998 89999999999999999999999999999999999988653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.53 E-value=9e-07 Score=69.90 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=62.3
Q ss_pred HHHhhhhhhHHHHHHHHhhccChhHHHHh-hhhhHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHHhh
Q 016076 84 LSGLFGGSLSQNLFVESLVLTSATFASAM-FNLIPAVTFVLATSIGLEKLGIRTRAGKAKLLGTLIGISGAMLLTL 158 (395)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~~~l~e~~~~~~~~~~~q~~g~~l~~~Gv~li~~ 158 (395)
+.+++...+++.++.+++++.|.+.+..+ ..+.|+++++++++++||++++. |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 35555556899999999999999999999 68999999999999999999999 49999999999999865
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.51 E-value=2e-07 Score=76.40 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHhhhhhhHHHHHHHHhhccChhHHHHh-hhhhHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHHhhh
Q 016076 84 LSGLFGGSLSQNLFVESLVLTSATFASAM-FNLIPAVTFVLATSIGLEKLGIRTRAGKAKLLGTLIGISGAMLLTLY 159 (395)
Q Consensus 84 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~Pi~~~lla~~~l~e~~~~~~~~~~~q~~g~~l~~~Gv~li~~~ 159 (395)
+.+++...++++++.+++++.+++.+..+ ..+.|++++++++++++|++++. |++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 45555666899999999999999999999 79999999999999999999999 599999999999998763
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.49 E-value=4.8e-07 Score=71.47 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHhhhhHHHHHHHHHHhcCCceeeeec-hhHHHHHHHHHHHHHhccccchhhhhhHHHHhhhhheeeec
Q 016076 270 SGIVASGFMVTLISWCVRVKGPLFASVF-SPMMLVVVALAASLILDEMLHLGSLLGATLIVCGLYAVLWG 338 (395)
Q Consensus 270 ~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li~~G~~l~~~~ 338 (395)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5555778899999999999999999888 89999999999999999999999999999999999988553
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=73.40 E-value=30 Score=32.96 Aligned_cols=233 Identities=8% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHhcccccccccccccccchhHHHHHHHHHHH-----hhhcccccccccccccccccCCCCCccccccccCCCC
Q 016076 119 VTFVLATSIGLEKLGIRTRAGKAKLLGTLIGISGAMLL-----TLYKGVEIKIWSTHVDLLHHAGGGGHVASVPLQSSDT 193 (395)
Q Consensus 119 ~~~lla~~~l~e~~~~~~~~~~~q~~g~~l~~~Gv~li-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (395)
+..+...+++++|..+..... .+--...++.+|..++ .++.| ...+
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~-~~~hn~~~~~lGt~lLW~GWfGFN~G----------------------------l~~~ 201 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIE-SDATSDRFSMLGSMVLWLFWPSFATA----------------------------IVPF 201 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHT----------------------------TSCG
T ss_pred HHHHHHHHHhcCccccCCCCc-CCCCCHHHHHHHHHHHHHHHHhhhhh----------------------------hccc
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHh-hhhcCCcchHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHHH
Q 016076 194 GKRLLGSLLALGSCFSYALWLIIQAKL-SEEYPCQYSSTALMCVMGAIQAVAFALCMEKNWDQWKLGWNIRLVTVAYSGI 272 (395)
Q Consensus 194 ~~~~~G~~~~l~a~~~~a~~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (395)
.......+-..+++..-++......++ .++.++ .....--.+.+.+...+.+-...+ +..+.+|+
T Consensus 202 ~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~-~~~~~nG~LAGLVAITa~~~~v~p-------------~~A~iIG~ 267 (407)
T 3b9w_A 202 EQMPQTIVNTLLALCGATLATYFLSALFHKGKAS-IVDMANAALAGGVAIGSVCNIVGP-------------VGAFVIGL 267 (407)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-HHHHHHHTTHHHHHHTTTTTTSCH-------------HHHHHHHH
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHhhhhhhheeccCCCCCCH-------------HHHHHHHH
Q ss_pred hhhhHHHHHHHHH-------HhcCCceeeeechhHHHHHHHHHHHHHhccccchhhhhhHHHH----hhhhheeeecCcc
Q 016076 273 VASGFMVTLISWC-------VRVKGPLFASVFSPMMLVVVALAASLILDEMLHLGSLLGATLI----VCGLYAVLWGKGK 341 (395)
Q Consensus 273 ~~~~~~~~l~~~a-------~~~~~~~~~s~~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li----~~G~~l~~~~~~~ 341 (395)
++..+++....+- ++.-++.-+-.+=..-=+++.++. .++....+..|++|.+.+ +++.++..+--++
T Consensus 268 iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~-glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 268 LGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSA-ILIVPGIAVAQLTGIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp HHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred ccccccccCC----CCCCCCCCCceeEeecCCCCccccccccCCCCCCCccCCCCCCC
Q 016076 342 EMKNVKQLAP----DAKTSKDSEPIKIVIGSPIDDSRHREEDHIFPKENKRNSKGDRD 395 (395)
Q Consensus 342 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (395)
+.+++++..+ +-+..++.|+.+....+....+.+.+.++..++....|+++.+.
T Consensus 347 r~~~e~e~~g~~~we~p~ld~~~hg~~ayp~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 404 (407)
T 3b9w_A 347 TGTTKQAYEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGLKNRIDAAVLSAKSEGHHH 404 (407)
T ss_dssp TCCCSSTTCGGGTSSSCCCGGGC-----------------------------------
T ss_pred CCCHHHHcCCcccccCccccHHHhchhhccchhhhhccccccCCChhhhccccccccc
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=55.20 E-value=1.3e+02 Score=27.75 Aligned_cols=18 Identities=6% Similarity=-0.011 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhcccccc
Q 016076 116 IPAVTFVLATSIGLEKLG 133 (395)
Q Consensus 116 ~Pi~~~lla~~~l~e~~~ 133 (395)
..+...++.+++.+|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhhccCCHh
Confidence 334445555666676544
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=34.60 E-value=1.5e+02 Score=27.80 Aligned_cols=45 Identities=2% Similarity=-0.192 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHhccccchhhhhhHHHHhhhhheeeecCcc
Q 016076 297 FSPMMLVVVALAASLILDEMLHLGSLLGATLIVCGLYAVLWGKGK 341 (395)
Q Consensus 297 ~~~~~pv~a~i~~~l~~ge~~~~~~~~G~~li~~G~~l~~~~~~~ 341 (395)
....-++++.++..+..-.......+.|..+++.|+.++.+.+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455555555544432222234456788888888777654443
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=30.17 E-value=2.4e+02 Score=23.47 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=23.8
Q ss_pred HHHHHHHhccccchhhhhhHHHHh--hhhheeee
Q 016076 306 ALAASLILDEMLHLGSLLGATLIV--CGLYAVLW 337 (395)
Q Consensus 306 ~i~~~l~~ge~~~~~~~~G~~li~--~G~~l~~~ 337 (395)
--+|..++++..=+.+..+..|.+ +|.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999988865 35554433
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.65 E-value=6.2e+02 Score=23.33 Aligned_cols=160 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhh-cCCcchHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHH
Q 016076 189 QSSDTGKRLLGSLLALGSCFSYALWLIIQAKLSEE-YPCQYSSTALMCVMGAIQAVAFALCMEKNWDQWKLGWNIRLVTV 267 (395)
Q Consensus 189 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (395)
+.+-+.+....-.+.....+...+......++.++ .+. -...........+...... ............
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~-r~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 115 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGA-RPAVFWGGVLIMLGHIVLA---------LPFGASALFGSI 115 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHHHHHHHHHHHHHH---------SCCSTTHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHHH---------HhhhHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCcee---------eeechhHHHHHHHHHHHHHhc-cccchhhhhhHHHHhhhhheeee
Q 016076 268 AYSGIVASGFMVTLISWCVRVKGPLF---------ASVFSPMMLVVVALAASLILD-EMLHLGSLLGATLIVCGLYAVLW 337 (395)
Q Consensus 268 ~~~g~~~~~~~~~l~~~a~~~~~~~~---------~s~~~~~~pv~a~i~~~l~~g-e~~~~~~~~G~~li~~G~~l~~~ 337 (395)
+..|+......-.......+..++.. ......+...++..++..+.+ ....+..++..++.+++.++...
T Consensus 116 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCccccccccccCCCCCCCCC
Q 016076 338 GKGKEMKNVKQLAPDAKTSKD 358 (395)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ 358 (395)
.+++..+++.+..+...+.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ 216 (491)
T 4aps_A 196 GGKKTLDPHYLRPTDPLAPEE 216 (491)
T ss_dssp HHHTTCCSCCSCCSCCCSHHH
T ss_pred hCcccccccccCCCCccccch
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=14.45 E-value=47 Score=20.76 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhhHHHHhhhhheeeecCcccccc
Q 016076 322 LLGATLIVCGLYAVLWGKGKEMKN 345 (395)
Q Consensus 322 ~~G~~li~~G~~l~~~~~~~~~~~ 345 (395)
+++.+++.++.+++.+++++++|+
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!