Query 016076
Match_columns 395
No_of_seqs 171 out of 1904
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 07:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 70.7 31 0.0022 29.6 25.0 17 115-131 191-207 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 25.5 36 0.0026 17.0 2.7 18 197-214 2-19 (27)
3 d1v54m_ f.23.7.1 (M:) Mitochon 5.5 1.3E+02 0.0097 17.1 1.5 22 129-155 7-28 (43)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 4.7 8.4E+02 0.061 20.2 19.3 49 199-249 282-331 (383)
5 d1iwga8 f.35.1.1 (A:513-566,A: 4.3 7E+02 0.051 18.7 9.2 29 303-331 95-123 (222)
6 d1xioa_ f.13.1.1 (A:) Sensory 3.6 8.2E+02 0.06 18.3 16.7 17 114-130 78-94 (226)
7 d1q90r_ f.23.12.1 (R:) ISP sub 3.5 4E+02 0.029 14.6 3.5 26 72-97 5-30 (39)
8 d1pv7a_ f.38.1.2 (A:) Lactose 3.5 8.7E+02 0.063 18.5 20.7 34 18-51 14-49 (417)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.3 7.8E+02 0.057 17.6 10.3 21 194-214 160-180 (189)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.3 4E+02 0.029 14.1 2.6 21 194-214 15-35 (37)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=70.71 E-value=31 Score=29.63 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHhcccc
Q 016076 115 LIPAVTFVLATSIGLEK 131 (395)
Q Consensus 115 ~~Pi~~~lla~~~l~e~ 131 (395)
...+...++.+++.+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHHHHHhcccc
Confidence 33444455555555544
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.50 E-value=36 Score=16.95 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 016076 197 LLGSLLALGSCFSYALWL 214 (395)
Q Consensus 197 ~~G~~~~l~a~~~~a~~~ 214 (395)
.+|.+..-+++++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 368888889999999884
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.55 E-value=1.3e+02 Score=17.07 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=15.0
Q ss_pred ccccccccccccccchhHHHHHHHHHH
Q 016076 129 LEKLGIRTRAGKAKLLGTLIGISGAML 155 (395)
Q Consensus 129 ~e~~~~~~~~~~~q~~g~~l~~~Gv~l 155 (395)
+|+++..+ |.+|+..++++.+.
T Consensus 7 ~~~ls~~E-----~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 7 KTPTSPKE-----QAIGLSVTFLSFLL 28 (43)
T ss_dssp SSCCCHHH-----HHHHHHHHHHHHHH
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHc
Confidence 45666666 77888777776654
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.74 E-value=8.4e+02 Score=20.23 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHh
Q 016076 199 GSLLALGSCF-SYALWLIIQAKLSEEYPCQYSSTALMCVMGAIQAVAFALCM 249 (395)
Q Consensus 199 G~~~~l~a~~-~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 249 (395)
..+.+.++++ ++-.+..+.+|+ +.+||......-...+..-.+...++.
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhc
Confidence 4555555443 333444443343 455766666666666655555555543
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.33 E-value=7e+02 Score=18.68 Aligned_cols=29 Identities=17% Similarity=-0.025 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccccchhhhhhHHHHhhh
Q 016076 303 VVVALAASLILDEMLHLGSLLGATLIVCG 331 (395)
Q Consensus 303 v~a~i~~~l~~ge~~~~~~~~G~~li~~G 331 (395)
+.+.+.+..+.+..++....+|..+.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44555666778999999888887776554
No 6
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=3.56 E-value=8.2e+02 Score=18.32 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhccc
Q 016076 114 NLIPAVTFVLATSIGLE 130 (395)
Q Consensus 114 ~~~Pi~~~lla~~~l~e 130 (395)
-+.|+....+......+
T Consensus 78 lTtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 78 VTTPLLLLSLSWTAMQF 94 (226)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HcccHHHHHHHHHHHHh
Confidence 47888887777665443
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.52 E-value=4e+02 Score=14.56 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHhhhhhhHHHHH
Q 016076 72 SKLNWKILFLGFLSGLFGGSLSQNLF 97 (395)
Q Consensus 72 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (395)
+...+++..-++..|.+.......++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcc
Confidence 44567777777777776654444333
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.48 E-value=8.7e+02 Score=18.49 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhh-cCCCHHHHHHHH
Q 016076 18 LMMVVVQVAFAGVNIFY-KLAAN-DGMSLRVIIAYR 51 (395)
Q Consensus 18 l~~l~~~~~~~~~~~~~-k~~~~-~~~~~~~~~~~r 51 (395)
+......+.++....+. .+..+ .|.++.++...-
T Consensus 14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~ 49 (417)
T d1pv7a_ 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIF 49 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 33444455555544433 33333 268887755443
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.33 E-value=7.8e+02 Score=17.63 Aligned_cols=21 Identities=5% Similarity=-0.130 Sum_probs=14.6
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 016076 194 GKRLLGSLLALGSCFSYALWL 214 (395)
Q Consensus 194 ~~~~~G~~~~l~a~~~~a~~~ 214 (395)
+....+.+.++++++.++...
T Consensus 160 ~v~~~aHl~G~l~G~~~g~~~ 180 (189)
T d2nr9a1 160 EMGNAAHISGLIVGLIWGFID 180 (189)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 344568888888888877644
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.26 E-value=4e+02 Score=14.10 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 016076 194 GKRLLGSLLALGSCFSYALWL 214 (395)
Q Consensus 194 ~~~~~G~~~~l~a~~~~a~~~ 214 (395)
.+..+|.++.+.-++.|+-|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 345678888887777777664
Done!