BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016077
(395 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/367 (67%), Positives = 293/367 (79%), Gaps = 15/367 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKCQPDTFSIHFR + H + + +KS+EPI +R C+LSTTSPSTSTA
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPS EA S+++A N WTY G++LATETL TSDEAVIAAA+
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAA 109
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
AEAVALARAAVKVAKDAAL+V + SA+ +SK ++S + + S W Q TE ERA IIGD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESK--LTSPSTIDASRWPQFTETERARIIGD 167
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
SV E P EE S Q + +S LE TH+EL+LL++Q+S+ IAVRSRRQTERKARR RA
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAA++V+SVK GSTS++KR S+QEVDYSDPLRYLR TTS+SRLLTA+EE++LSA IQDL
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE L+E L+ER GG PTFAQWAAAAGVDQR LR+R+N+G +CKDKMI SNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 383 KNYQGAG 389
KNYQGAG
Sbjct: 348 KNYQGAG 354
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 222/373 (59%), Positives = 274/373 (73%), Gaps = 15/373 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSH-------PSKSKEPICFRTHCVLSTTSPS 76
MSCLLPQFKC P+TFSI F+T N+ HH S +K ++P RT C+LS SP
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 77 TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136
TST T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA
Sbjct: 61 TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 112
Query: 137 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERER 196
IAAA+AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ER
Sbjct: 113 SIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESER 172
Query: 197 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 256
A IIG+ V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKA
Sbjct: 173 ADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKA 232
Query: 257 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 316
RRTRAAEK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS
Sbjct: 233 RRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELS 292
Query: 317 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
GIQDLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIR
Sbjct: 293 EGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 352
Query: 377 LVISIAKNYQGAG 389
LVISIAKNYQGAG
Sbjct: 353 LVISIAKNYQGAG 365
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/368 (65%), Positives = 286/368 (77%), Gaps = 18/368 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNH-QHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMT 82
MSCLLPQFKCQPDTFS+HFR L +H +H+ P CVLS+ SPST+
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP-----------QCVLSSASPSTA---- 45
Query: 83 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTS-DEAVIAAA 141
VLD+EKLRLPSLE HS++++ANR WTY G +GP + GTSLA ETL + DEAVIAAA
Sbjct: 46 -VLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAA 104
Query: 142 SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG 201
+AEAVALARAAVKVAKDAA M +++S K ++K I+S+ D+ +SMW+ LTE+ERA IIG
Sbjct: 105 AAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADIIG 164
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E EEYS Q P + LEPT EEL LL++Q+S+ IAVRS+RQTERKARR RA
Sbjct: 165 DSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARA 224
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKAAANV+SVKSGSTS++KR +QEVD SDPLR+ R +SSSRLL+A EE++LS GIQD
Sbjct: 225 AEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQD 284
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE + E L ER GG P+FAQWAAAAGVDQ LR+RLNYGILCKDKMI SN+RLVISI
Sbjct: 285 LLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISI 344
Query: 382 AKNYQGAG 389
AKNYQG G
Sbjct: 345 AKNYQGTG 352
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 250/368 (67%), Positives = 281/368 (76%), Gaps = 10/368 (2%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKC PDTFS H + LH SK++E I FR C LSTTSP ST+ T
Sbjct: 1 MSCLLPQFKCPPDTFSTHPK-LHIL-------SKNREAIYFRVQCALSTTSPPLSTSTTA 52
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAAA+
Sbjct: 53 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAA 112
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASIIG 201
AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I+G
Sbjct: 113 AEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG 172
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR RA
Sbjct: 173 DSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARA 232
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GIQD
Sbjct: 233 AEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQD 292
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVISI
Sbjct: 293 LLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISI 352
Query: 382 AKNYQGAG 389
AKNYQGAG
Sbjct: 353 AKNYQGAG 360
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 248/368 (67%), Positives = 279/368 (75%), Gaps = 7/368 (1%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKC PDTFS H + H K++E I FR C LSTTSP ST+ T
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKL-----HILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA 55
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAAA+
Sbjct: 56 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAA 115
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASIIG 201
AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I+G
Sbjct: 116 AEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG 175
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR RA
Sbjct: 176 DSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARA 235
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GIQD
Sbjct: 236 AEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQD 295
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVISI
Sbjct: 296 LLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISI 355
Query: 382 AKNYQGAG 389
AKNYQGAG
Sbjct: 356 AKNYQGAG 363
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 229/367 (62%), Positives = 272/367 (74%), Gaps = 19/367 (5%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKCQPD+FSIH + EP CFR C LS+ + + T
Sbjct: 1 MSCLLPQFKCQPDSFSIH---------------SNGEPFCFRAQCALSSA---SPSTSTA 42
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAAAS 142
VL++EKLRLPSLE+HS+++AANR WTY G +GP E GTSLATETL +DEAVIAAA+
Sbjct: 43 VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 102
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
AEAVALARAAVKVAKDAA M ++ S ++K I+S+AD+ +SMW+ LT +ERA IIG
Sbjct: 103 AEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGV 162
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
S E EE S Q P +S PTHEEL LLE+Q+S+SI VRS+RQT+RKA+R RAA
Sbjct: 163 SFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAA 222
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAAAN + +KSGS ++KR VQEVD SDPLR+ R ++SSRLL+A EE++LS GIQDL
Sbjct: 223 EKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDL 282
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE + E L ER GG PTFAQWAAAA VDQ LR+RLNY ILCKDKMI SNIRLVISIA
Sbjct: 283 LKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIA 342
Query: 383 KNYQGAG 389
KNYQGAG
Sbjct: 343 KNYQGAG 349
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 259/372 (69%), Gaps = 26/372 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLP FKCQPD+FS+HFRT ++ HS K F+ C +ST+ P +T+
Sbjct: 3 SCLLPNFKCQPDSFSVHFRTSYSVSKHS------KGSAFFQPQCAVSTSPP----LLTST 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S++ ++R WTY +GPSTE +LA+ETL TSDEAV+AAA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVAAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAA+KVAKDA L N HN+ K ++SS+AD S W Q TE+ERA I+G
Sbjct: 113 EAVALARAALKVAKDATLFGNSHNT-----KLSVSSAADKR-SKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258
D+ +V S + S DL P ++ E++S S AVRS RQTERKARR
Sbjct: 167 AVSDTGVVSDRITAPGSLECNKEASDDLTPAEKQE---VEKLSVSSAVRSTRQTERKARR 223
Query: 259 TRAAEKAAANVMS-VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+ EK A+ + S VK+GS+SR+KR + QE+D++DPLRYLR TTSSS+LLTA EE QLS
Sbjct: 224 VKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSE 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ERCG PTF+QWA+AAGVD++ LR+R+ +G CKD+MI SNIRL
Sbjct: 284 GIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRL 343
Query: 378 VISIAKNYQGAG 389
VISIAKNYQGAG
Sbjct: 344 VISIAKNYQGAG 355
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 256/369 (69%), Gaps = 20/369 (5%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT + H+ K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCARKHN------KGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EAVALARAAVKVAKDA L N +N+ ISS+AD S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNT-----NLLISSTADKR-SKWDQFTEKERAGILGHL 166
Query: 204 VIVEAAPEEEYSEQQPLNKS--ADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKARRTR 260
+ + + NK DLE +E L E+ S S+AVRS RQTERKARR +
Sbjct: 167 AVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAK 226
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
EK A+ + SVK+GS R+KR QEVD++DPLRYLR TTSSS+LLT EE +LSAGIQ
Sbjct: 227 GLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L+ L+ERCG PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRLVIS
Sbjct: 287 DLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVIS 346
Query: 381 IAKNYQGAG 389
IAKNYQGAG
Sbjct: 347 IAKNYQGAG 355
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 257/372 (69%), Gaps = 26/372 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S S+AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSA
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRL
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 343
Query: 378 VISIAKNYQGAG 389
VISIAKNYQGAG
Sbjct: 344 VISIAKNYQGAG 355
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 202/367 (55%), Positives = 251/367 (68%), Gaps = 25/367 (6%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLP F C DTF H L +H SK++ +CF+ CVLS TSPST
Sbjct: 1 MSCLLPHFNCHLDTFRTHPYAL------PTHLSKTRPNLCFQPQCVLSATSPST------ 48
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
+L +EK +L +L+A S+ N W Y A N ++L+ E+L T++EAVI AA+
Sbjct: 49 LLSLEK-KL-ALDAPSDP---NTSWPYIAAA------NFKSTLSAESLLTNEEAVIVAAA 97
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
+EA+ALA+AA KVAKDAAL+V A+ + K +SS +D W + E E + +
Sbjct: 98 SEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQME-EVEDGVAE 156
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
+ A E + P + +DLEP+HEEL+ L+EQ+S SIAVRSRRQTERKA+R RA
Sbjct: 157 ESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRAT 216
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKA N S K GS+SRRKR S+QEVDYSDPLRYLR TTS+SRLLT EE++LSAGIQDL
Sbjct: 217 EKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDL 276
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE ++E L+ER G PTFAQWAA AGVDQ+ LR+RLNYGI CKDKMI SNIRLVISIA
Sbjct: 277 LKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIA 336
Query: 383 KNYQGAG 389
KNYQG+G
Sbjct: 337 KNYQGSG 343
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 255/372 (68%), Gaps = 26/372 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N + + ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNYTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S +AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVGLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSA
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRL
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 343
Query: 378 VISIAKNYQGAG 389
VISIAKNYQGAG
Sbjct: 344 VISIAKNYQGAG 355
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 206/374 (55%), Positives = 257/374 (68%), Gaps = 28/374 (7%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S S+AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRL--LTANEEMQL 315
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+L LT EE +L
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHEL 283
Query: 316 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375
SAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNI
Sbjct: 284 SAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNI 343
Query: 376 RLVISIAKNYQGAG 389
RLVISIAKNYQGAG
Sbjct: 344 RLVISIAKNYQGAG 357
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 243/369 (65%), Gaps = 12/369 (3%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPS--KSKEPICFRTHCVLSTTSPSTSTAM 81
M+CLLPQFKCQPDTFSI LH SS S ++++ +CFR C +ST P T+ A
Sbjct: 1 MTCLLPQFKCQPDTFSIS-SVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAE 59
Query: 82 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141
T++ DVEKLRLP +E++SN+++A Q T+ +G E T+L + L +E + AA
Sbjct: 60 TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 142 SAEAVALARAAVKVAKDAA-LMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 200
+A A A LM + KP SK S + AQL E E+ +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSG----AQLLENEQ---V 172
Query: 201 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 260
G E + E E +++ AD+EPT EEL+LLE ++ +SI VRS RQ ERKARR R
Sbjct: 173 GSMRNFEGS-ENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
AAEK A+NV+SVK GS SR+KR SVQEVDYSDPLRYLR T+SSRLLT++EE +LSAGIQ
Sbjct: 232 AAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQ 291
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L + L R G SP+F QWAAAAG+DQR LRRRLN+G CKDKMI SN+RLVIS
Sbjct: 292 DLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVIS 351
Query: 381 IAKNYQGAG 389
IAKNYQG+G
Sbjct: 352 IAKNYQGSG 360
>gi|449523964|ref|XP_004168993.1| PREDICTED: RNA polymerase sigma factor sigB-like, partial [Cucumis
sativus]
Length = 296
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 215/304 (70%), Gaps = 15/304 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSH-PS------KSKEPICFRTHCVLSTTSPS 76
MSCLLPQFKC P+TFSI F+T N+ HH S P+ K ++P RT C+LS SP
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 77 TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136
TST T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA
Sbjct: 61 TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 112
Query: 137 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERER 196
IAAA+AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ER
Sbjct: 113 SIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESER 172
Query: 197 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 256
A IIG+ V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKA
Sbjct: 173 ADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKA 232
Query: 257 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 316
RRTRAAEK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS
Sbjct: 233 RRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELS 292
Query: 317 AGIQ 320
GIQ
Sbjct: 293 EGIQ 296
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 177/372 (47%), Positives = 233/372 (62%), Gaps = 28/372 (7%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRT-HCVLSTTSPSTSTAMTT 83
SCLLPQF C PDTF I T +H HH H + P T HC+LS++ T
Sbjct: 7 SCLLPQFICNPDTF-IRIPTHRHHHHHHHHLFLLQSPKTTTTRHCILSSS--------TA 57
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
+LD + P+ +S W Y +++ + +S LTS++AVIAAA++
Sbjct: 58 LLDFKFDVAPAESENSPP------WPY------ASQAHSSSSSVESLLTSEDAVIAAAAS 105
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EA+ LA+AA K+AKDA L+VN+ + P + S+ + W Q E + S
Sbjct: 106 EALTLAKAAAKLAKDATLLVNNKLPQHNQQPPQLPSTPENLLLKWVQHMEAAEYAAAAVS 165
Query: 204 VIVEAAPEE-----EYSEQQPLNKSADLEPTHEELKLLEEQVSQ-SIAVRSRRQTERKAR 257
+ A + S Q + + D EPT EEL+ +EEQ+ SI RS RQTERKAR
Sbjct: 166 IATGPAGPDIMEHLHISPNQEDDFNDDDEPTSEELEDVEEQLYDTSIDARSGRQTERKAR 225
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R RA+ KAA N++S +SGST+R+KR QEVDYSDPLRYLR TT ++RLLT +EE++ S
Sbjct: 226 RVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSE 285
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDL+KLE L+E L+E+CGG PTFAQWA AGVDQ+ LR+RLNYG+ CK+KMI SNIRL
Sbjct: 286 GIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRL 345
Query: 378 VISIAKNYQGAG 389
VIS+AKNYQG+G
Sbjct: 346 VISVAKNYQGSG 357
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTE +ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
GI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPG 346
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 196/366 (53%), Gaps = 45/366 (12%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
M+CL PQFK P H SS S R HC + TS A+
Sbjct: 1 MACLAPQFKWAPSA--------AAHMPSSSSSSSYSRCSALRVHCAV------TSAAV-- 44
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
+E +N AA + Y P+ + N +LA+E L ++EAV+AAA+A
Sbjct: 45 -----------VEDRTNGSAAQLRLAY---AAPAIQRNFEATLASEALLNEEAVVAAAAA 90
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EAVALARAA + A+D +V +N +P I + + ++ E S D
Sbjct: 91 EAVALARAAAEAAQDVVQIVQRNNH-----QPVIRPKKCVDNYLANEILRTEMRSSSPD- 144
Query: 204 VIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAE 263
+ P EY + + + D EL Q +++IAV+S RQ+ERKARRTRAA
Sbjct: 145 -MYANNPLMEYLDSYGIMDAED------ELDAYA-QYTENIAVKSARQSERKARRTRAAI 196
Query: 264 KAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL 323
KA+ + + + + S +K+ S +PL L T RLLTA EE++ S GIQDLL
Sbjct: 197 KASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLWKMTGR-RLLTAKEEVEFSEGIQDLL 255
Query: 324 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 383
KLE ++ L E GG PTF+QWA AAGVD++ LR+RLNYGI CK++M+TSN+RLVISIA+
Sbjct: 256 KLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKNRMVTSNVRLVISIAR 315
Query: 384 NYQGAG 389
++G G
Sbjct: 316 EFEGPG 321
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 298
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 299 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 358
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RLNYGI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPG 321
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 104/152 (68%), Gaps = 9/152 (5%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMS---VKSGSTSRRKRPSVQEVDYSDPLRYL 297
S ++AV+S R+TERKARR RAA KAA S V + ST +++ Q PL
Sbjct: 165 SIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ-----TPLGCF 219
Query: 298 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357
T RLLTA +E++ S GIQDLLKLE +++ +++ GG PTF+QWAAAAG D+ LR
Sbjct: 220 YKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLR 278
Query: 358 RRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 310
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 208/384 (54%), Gaps = 68/384 (17%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPIC-----FRTHCVLSTTSPSTS 78
M+CL P FK P +FS T H +QH S S S C R C + +
Sbjct: 1 MACLAPHFKWAPSSFS----TTHAYQHPSPSSSSSNSGRCSGRRLIRVQC-------AAT 49
Query: 79 TAMTTVLDVEKLRLPSLE-AHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137
+A V+D E+ L +S+ +A P + N ++LA+ET+ + EAV
Sbjct: 50 SAAAAVVDGERAAGGPLHLVYSSPESA-----------PVLQRNFESTLASETVLNKEAV 98
Query: 138 IAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERE-- 195
+ AA+AEAVALARAA + A++ MV K S+P + + ++ E
Sbjct: 99 VTAAAAEAVALARAAAEAAQEVVHMVQ-----KSSSQPVFRKKGEVENYLAKEILRTEML 153
Query: 196 --RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTH---EELKLLEE-QVSQSIAVRSR 249
RA D V+ S LEP +E +L ++ Q +++IAV+S
Sbjct: 154 SSRAYEYSDGVL-----------------SGVLEPYGIPSDEAELDDDKQDAENIAVKSA 196
Query: 250 RQTERKARRTRAAEKAAANVM-SVKSGSTSRRKR---PSVQEVDYSDPLRYLRATTSSSR 305
RQ+ER+ARRTRA KAA V S+K ++S++KR PS +PL L T +
Sbjct: 197 RQSERRARRTRATMKAAITVRGSLKLVTSSKKKRSKGPSTM-----NPLGSLWKMTGR-K 250
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++LS GIQDLLKLE ++ L+E GG PTF QWAAAAG D+ LR+RL++GI
Sbjct: 251 LLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDHGIH 310
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
CK++M+TSN+RLVISIA+ ++G G
Sbjct: 311 CKNRMVTSNVRLVISIAREFEGPG 334
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+TS +K+ S ++PL L T RLLTA EE++ S GIQDLLKLE ++ L+E
Sbjct: 234 ATSSKKKRSKGASSGTNPLGSLWKMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEY 292
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
GG PTFAQWA AAGVD+R LR+RL++GI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 293 NGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPG 346
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+TS +K+ S ++PL L T RLLTA EE++ S GIQDLLKLE ++ L+E
Sbjct: 234 ATSSKKKRSKGASSGTNPLGSLWKMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEY 292
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
GG PTFAQWA AAGVD+R LR+RL++GI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 293 NGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPG 346
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+TS +K+ S ++PL L T RLLTA EE++ S GIQDLLKLE ++ L+E
Sbjct: 233 ATSSKKKRSKGASSGTNPLGSLWKMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEY 291
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
GG PTFAQWA AAGVD+R LR+RL++GI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 292 NGGQPTFAQWATAAGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPG 345
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
GI CK++M+TSN+RLVISIA+ ++G G
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPG 346
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 124/182 (68%), Gaps = 8/182 (4%)
Query: 212 EEYSEQQPLNKSADLEPTH----EELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA 267
+EYS+ L DLE +H +E++L + Q +SIAV+S RQ+ER+ARRTRAA KAA
Sbjct: 157 DEYSDDVLLE---DLESSHGVLNDEVELDDTQDYKSIAVKSERQSERRARRTRAAIKAAT 213
Query: 268 NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 327
V S + ++S +K+ S +PL L T +LLTA EE++LS GIQDLLKLE
Sbjct: 214 TVRSSQKLASSSKKKRSKGPTTSMNPLGSLWKLTGR-KLLTAKEEVELSNGIQDLLKLEA 272
Query: 328 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
++ L+E G PTF QWAAAAG D++ LR+RL +GI K++M+TSN+RLVISIA+ ++G
Sbjct: 273 IQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAHGIYSKNRMVTSNVRLVISIAREFEG 332
Query: 388 AG 389
G
Sbjct: 333 PG 334
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G G
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPG 322
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 129 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 184
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 185 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 243
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G G
Sbjct: 244 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPG 279
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 8/156 (5%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGW-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G G
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPG 322
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 59/69 (85%)
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVIS
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 381 IAKNYQGAG 389
I KNYQGAG
Sbjct: 63 IXKNYQGAG 71
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 146/265 (55%), Gaps = 27/265 (10%)
Query: 129 ETLTSDEAVIAAASAEAVALARAAVKVAKDAALMV-NHHNSAKPKSKPAISSSADTNTSM 187
E L + EAV+AAA+ + +L A +VA + A M N H +A P DT S
Sbjct: 68 EALLNKEAVVAAAAGKP-SLWLAQAEVAGEVARMAQNDHPAALPPRD-------DTVDSF 119
Query: 188 WAQLTERERASIIGDSV-IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAV 246
++ R + +VE EE+S D + H S ++ V
Sbjct: 120 LSREVLRSEVGLDARRAGLVEMLEGEEHSSIFSDESEDDDDGGH----------SIAVTV 169
Query: 247 RSRRQTERKARRTRAAEKAAANVMSVK--SGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
+S R++ER+ARR RAA K A S+K S++RRKR PL L T
Sbjct: 170 KSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLK----GCLTPLGCLYKMTGP- 224
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA +E++ S GIQDLLKLE +++ +++ G PTF+QWAAAAG D+ LRRRLN+G+
Sbjct: 225 RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGV 284
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
CK++M+ SN+RLVISIAK ++G G
Sbjct: 285 YCKNRMVKSNVRLVISIAKEHEGPG 309
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 69/88 (78%)
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
S+ RLLTA +E++LS GIQD LKLE +++ ++ GG PTF QWAAAAG D+ LR+RL+
Sbjct: 232 SARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLS 291
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
YGI CK+ M+ SN+RLVISIAK ++G G
Sbjct: 292 YGIYCKNMMVKSNVRLVISIAKEFEGPG 319
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 270 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
M S++RRKR PL L T RLLTA +E++ S GIQDLLKLE ++
Sbjct: 196 MKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQ 250
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 251 KEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 310
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 68/88 (77%)
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
+ RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+ LR+RLN
Sbjct: 38 TGRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLN 97
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
YGI CK+ M+ SN+RLVISIA+ ++G G
Sbjct: 98 YGISCKNTMVKSNVRLVISIAREFEGPG 125
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S++RRKR PL L T RLLTA +E++ S GIQDLLKLE +++ +++
Sbjct: 102 SSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQY 156
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 157 NAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 210
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 201/390 (51%), Gaps = 37/390 (9%)
Query: 24 MSCLLPQ-------FKCQPDTFS--IHFR-TLHNHQHHSSHPSKSKEPICFRTHCVLSTT 73
M+ +LP+ F C +T S I F+ + NH S + +E C T VLS T
Sbjct: 1 MAWMLPRTGSPSIHFLCASETSSMPIGFKLVMKNH----SCALRIREASCCETTTVLSVT 56
Query: 74 SPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTY-FGAVGPSTEENLGTSLATETLT 132
+ + T K + P+ +AHS++++ Y + T+ ++ ++ATETL
Sbjct: 57 AVPSFT--------RKDQAPAAKAHSSSLSIIEDVQYNTEPINQQTKPSMKVTIATETLL 108
Query: 133 SDE-AVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQL 191
E A I AA+AEAVALA+AAVK A+D + + + S AD A+L
Sbjct: 109 QSEMAGIEAAAAEAVALAKAAVKAARDVVALSEGQTPLESEYLKDFPSEADLLRIERARL 168
Query: 192 TERERASIIGDSVIVE-----------AAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV 240
TE ER + S V+ + S L + ++ + Q
Sbjct: 169 TEMERLEAMNFSNRVQLFEIHSEEECESQSPSSSSSTPALGRECNISEHAANSLVSPLQK 228
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYLRA 299
+ +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R LR
Sbjct: 229 TYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLLR- 287
Query: 300 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 359
SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+ R
Sbjct: 288 DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMR 347
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L G DK+I N+RLVIS+AKNYQ G
Sbjct: 348 LEVGRDSFDKIINCNLRLVISVAKNYQNRG 377
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 297
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 130 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 189
Query: 298 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 190 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 248
Query: 358 RRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RL G DK+I N+RLVIS+AKNYQ G
Sbjct: 249 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRG 280
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 5/150 (3%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRA 299
S +IAVRS R+ ER +R RA KA + + S +++ +P+ D DP+R YLR
Sbjct: 255 SYNIAVRSNRRRERLLKRERALVKADKAATAPPTTSKAKKSQPAY---DPQDPVRAYLR- 310
Query: 300 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 359
++LLT++EE++L+ GIQDLL++E ++ L E+ G PT +WA A G ++ L R
Sbjct: 311 DIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESR 370
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ G CKD+M+ SN+RLV+SIAK YQG G
Sbjct: 371 IKSGQACKDRMVNSNLRLVVSIAKRYQGRG 400
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCG 324
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 12/172 (6%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 166 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 213
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 214 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 273
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G
Sbjct: 274 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCG 325
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
D SDP+R YLR ++LLTA EE+ LS IQDLLKLE ++ L G + T +W+
Sbjct: 259 DPSDPVRAYLR-DIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSR 317
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A G++Q RL G KDKM+ SN+RLV+SIAKNYQG G
Sbjct: 318 AVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRG 359
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRSRR R++ RA + + S S +KR S Q D +DPLR + +
Sbjct: 176 VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLS-QGFDPNDPLRLFLWGPETKQ 234
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L A IQDL+ LEG++ L + G PT +WA A G+ L+ +L+ G
Sbjct: 235 LLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNR 294
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++K+I +N+R+V+ IAK YQ G
Sbjct: 295 SREKLINANLRMVVHIAKRYQNRG 318
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + + + R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCG 324
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 92/164 (56%), Gaps = 12/164 (7%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPL-RYLRA 299
S+++AV+S R+ ER +R RA EKA ++ S + S+ + SDP+ YLR
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGKVAFALASSPPVPKADKSLIKHRLSDPICSYLR- 265
Query: 300 TTSSSRLLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+S+LLTA EE+ LS IQ LKLE +R L G PT ++W+ A G
Sbjct: 266 DVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVG 325
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRMSRP 394
++Q R+ G KDK++ SN+RLV+SI KNYQG G M+ P
Sbjct: 326 MNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRG-MTLP 368
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 61 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 120
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G
Sbjct: 121 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 45 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 104
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G
Sbjct: 105 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRG 162
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 3/105 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R YLR ++LL+A+EE+ LS IQD+LKLE +R L G PT ++W+ A
Sbjct: 268 SDPIRSYLR-DIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAV 326
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRMSRP 394
+DQ L R+ G KDK++ SN+RLV+SI KNYQG G M+ P
Sbjct: 327 SLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRG-MTLP 370
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
SRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 54 SRRKESATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHE 113
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 SRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRG 166
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 81/141 (57%)
Query: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
RR +RK +++ + + R ++ +E+D DPLR + +LLT
Sbjct: 214 RRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLT 273
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E QL + IQDLL+LE ++ L + G PT A+WA AG++ R L+ +L+ G ++
Sbjct: 274 LEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSRE 333
Query: 369 KMITSNIRLVISIAKNYQGAG 389
K+I +N+R+V+ +AK+YQG G
Sbjct: 334 KLIQANLRMVVHVAKSYQGRG 354
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE-----VDYSDPLRYLRAT 300
VRS R ER+A+ + + + + G + ++ VQ+ ++ SDPL +
Sbjct: 202 VRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQS 261
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
S +LLT+ +E QL IQ+LL+LE L+ L + G PT A+WA AG++ R+++ +L
Sbjct: 262 PESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQL 321
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
G ++K+I +N+RLV IAK+YQG G
Sbjct: 322 RCGNRSREKLIQANLRLVHYIAKSYQGRG 350
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 300
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 256 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 307
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 308 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 367
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+G C+D+++ S LV+ IA+NY+G G
Sbjct: 368 QFGWYCRDELLRSTHSLVLYIARNYRGMG 396
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 300
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 206 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 257
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 258 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 317
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+G C+D+++ S LV+ IA+NY+G G
Sbjct: 318 QFGWYCRDELLRSTHSLVLYIARNYRGMG 346
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + + +K+ Q VD D L+ + +
Sbjct: 187 VRSKRQLERRAKNRRAPKSNDVDNEGYVPQKINAKKKFK-QGVDTDDALQLFLWGPETKQ 245
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ +L+ ++ G
Sbjct: 246 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRS 305
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++K+IT+N+RLV+ IAK YQ G
Sbjct: 306 SREKLITANLRLVVHIAKQYQNRG 329
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR--PSVQE-VDYSDPLR 295
++ +SI ++ RR +RK ++ + + K + RR R ++E +D + LR
Sbjct: 190 KIVRSIRLKERRSKQRKVSNSKVLDD---EMYLTKKSNVQRRLRLEKKLKEGLDGNHALR 246
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
+ + +LL+ EE QL A IQDL KL+ + L G PT A+WA G+ R+
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L++RL+ G KDK+I +N+RLV+ IAK YQG G
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRG 340
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++K+IT+N+RLV+ IAK YQ G
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRG 330
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 240 VSQSIAVRSRRQTERKARRTRAAEKAAAN---VMSVKSGSTS--RRKRPSVQEVDYSDPL 294
+ ++ VRS R ER++++ + + + ++ K + R ++ +E D DPL
Sbjct: 69 IGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPL 128
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
R + +LLT +E QL + IQDLL+LE ++ L + G PT A+WA AG++ R
Sbjct: 129 RLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCR 188
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ +L+ GI ++K+I +N+R+V+ +AK+YQG G
Sbjct: 189 LLQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRG 223
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 128 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 186
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 187 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 246
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++K+IT+N+RLV+ IAK YQ G
Sbjct: 247 SREKLITANLRLVVHIAKQYQNRG 270
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSPTFAQWAA 347
+DP+R YLR ++LLTA+EE+ LS IQ DLL LE ++ L G P+ +W+
Sbjct: 273 TDPVRAYLR-DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSR 331
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRMSRP 394
A G++Q R+ G KDKM+ SN+RLV+SI KNYQG G M+ P
Sbjct: 332 AVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRG-MTLP 377
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS+RQ ER+A+ RA + +N M G ++ K+ Q D D L+
Sbjct: 188 VRSKRQLERRAKNRRAPK---SNNMD-SEGYVPQKINAKKKMKQGFDTDDALQLFLWGPE 243
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L A IQ L+KLE ++ L + G PT +WA A G+ L+ ++
Sbjct: 244 TKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHR 303
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G ++K+IT+N+RLV+ IAK YQ G
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRG 330
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 79/141 (56%)
Query: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
RR +RK +++ + + R ++ +E+D +DPL + + +LLT
Sbjct: 217 RRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLT 276
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E QL + IQDLL+LE ++ L + G PT A+WA G++ R L +L G ++
Sbjct: 277 LEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSRE 336
Query: 369 KMITSNIRLVISIAKNYQGAG 389
K+I +N+R+V+ +AK+YQG G
Sbjct: 337 KLIQANLRMVVHVAKSYQGRG 357
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ P+ ++ D +R RLL A EE++L+ I DLL+LE +RE ++E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G PT +W+ A ++ +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRG 166
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 281
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
+ + ++ +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYG 356
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 280 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 339
RK+P + D +R RLL A EE++L+ I DLL+LE +RE +++R
Sbjct: 55 RKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERY 109
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P+ A+WA + E RRRL YG KDKM+ SN+RLV+SIAK Y G
Sbjct: 110 PSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRG 159
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 282
S LEPT LEE + VRS R+ ER+++ R + S +K+
Sbjct: 170 STGLEPTDLSNFSLEEVKT----VRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKK 225
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
+ + D DPLR + +LLTA EE +L +QDL+ LE ++E + G PT
Sbjct: 226 IN-EGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA A G+ ++ +L+ G ++K+I +N+R+V+ IAK YQG G
Sbjct: 285 VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRG 331
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 246 VRSRRQTERKARRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
VRS R +R++++ + + + +S G SRRK + ++ D +DPLR +
Sbjct: 203 VRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRK--TSEKFDPNDPLRLFLWGPETK 260
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLTA EE +L IQDL+ L+ ++ L + PT +WA A G+ + L+ +L+
Sbjct: 261 KLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQ 320
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
++K+I +N+R+V+ IAK YQG G
Sbjct: 321 TSREKLINANLRMVVHIAKQYQGRG 345
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 273 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSG + SRR+ P+ ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 60 KSGKAAKSRRRTPTAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVR 119
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ L ++ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 DRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 265 AAANVMSVKS---GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A+V S KS +T RR+ S ++ D +R RLL A EE++L+ I D
Sbjct: 45 GVADVSSKKSRKLSATPRRRGQSKKKPFTEDSIRVYLQEIGRIRLLRAEEEIELARQIAD 104
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 380
LL LE +R L E G PT +WA A+ + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 105 LLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVS 164
Query: 381 IAKNYQGAG 389
IAK Y G
Sbjct: 165 IAKKYMNRG 173
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
K G T R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 64 KGGKT--RRRAQTKKKQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK 121
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LS+R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 122 LSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 RLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 204 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 257
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 258 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 317
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G + K+I +N+R+V+ IAK YQG G
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRG 344
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE LS+
Sbjct: 62 GVKSRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQ 121
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ P ++WA A V + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 122 QLDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRG 176
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 215 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 268
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 269 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 328
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G + K+I +N+R+V+ IAK YQG G
Sbjct: 329 GNRSRQKLIYANLRMVVHIAKQYQGRG 355
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 226 LEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTS------- 278
L+ H KLL + + +RS+R ER++++ A ++ + + ST
Sbjct: 174 LDLNHSYEKLLSKG---QVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALCGVVD 230
Query: 279 ----RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
+ + + +D +P + ++ LTA EE QL + +Q+L+KLE + L
Sbjct: 231 TKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEA 290
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+CG P +WA A G+ ++L+ ++ G C++KM SN RLVI +A+ YQG G
Sbjct: 291 QCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYG 345
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 KLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 RLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 275 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
G R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 63 GVAKSRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLV 122
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E P +WA+A + E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 123 EHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 119
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 58 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 117
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 118 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 176
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEM 313
KA+ TR A K A RR+ ++ Y+ D +R RLL A EE+
Sbjct: 67 KAKATRGAAKGKA-----------RRRTAQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEI 115
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
+L+ I DLL+LE +R+ + ++ PT A WA A + RRRL G KDKM+ S
Sbjct: 116 ELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQS 175
Query: 374 NIRLVISIAKNYQGAG 389
N+RLV+SIAK Y G
Sbjct: 176 NLRLVVSIAKKYMNRG 191
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 277 TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
T+ R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 50 TATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRG 163
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 68/127 (53%)
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
E A A K +SRR+ S ++ D +R RLL A EE++L+ I DL
Sbjct: 35 EDAIAEPEDRKVRGSSRRRETSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADL 94
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE + E L +R G P +WA A ++ +RRL G KDKM+ SN+RLV+SIA
Sbjct: 95 LELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIA 154
Query: 383 KNYQGAG 389
K Y G
Sbjct: 155 KKYMNRG 161
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 271 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
+ K+ ST RR +P + D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 ATKARSTRRRAQPKKKHY-TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L + P A+WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 116 HLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRG 174
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 273 KSGST--SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSGS R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 59 KSGSKVAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIR 118
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L E P +WA A G+ R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 EQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 62 KSGKAAKSRRRSQNKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 121
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L ++ P +++WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 122 RLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 180
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 RLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 119
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E+ P + +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 RLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 280 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L G
Sbjct: 54 RRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGR 113
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 YPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRG 164
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 273 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSG + SRR+ P ++ Y+ D +R RLL A+EE++L+ I +LL+LE R
Sbjct: 59 KSGKAAKSRRRTPIAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERAR 118
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L ER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 ERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 281 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
KRPS +D +R S LL A +E++L+ IQDL+ LE +RE L E G
Sbjct: 196 KRPS------TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 341 TFA--QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ QWAAAAG++ LR+RL+ G K++MI +N+RLV+SIAK Y
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKY 296
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 280 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L ++
Sbjct: 59 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDR 118
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+P A+WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 TPQDAEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 169
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G TSRR+ + ++ D +R RLL A EE++L+ I DLL+LE + + L+E
Sbjct: 45 GKTSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAE 104
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P A+WA A + + +RRL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 105 TLQRDPQDAEWAEAVDMPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRG 159
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 272 VKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
VK+G + R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +R
Sbjct: 54 VKAGKVVKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVR 113
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L +R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 EQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 173
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G ++RR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ P +WA + + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRG 165
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 266 AANVMSVKSGSTSRR----KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A+N + K +T RR K+P + D +R RLL A EE++L+ I D
Sbjct: 55 ASNKKARKLPATRRRTQTKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIAD 109
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 380
LL LE +R E G PT +WA A + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 110 LLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIGRRAKDKMVQSNLRLVVS 169
Query: 381 IAKNYQGAG 389
IAK Y G
Sbjct: 170 IAKKYMNRG 178
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G ++RR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE LSE
Sbjct: 46 GRSNRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 105
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ P +WA ++ R RL+ G K+KM+ SN+RLV+SIAK Y G
Sbjct: 106 QLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRG 160
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Query: 265 AAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
A ++ +KSG ++ R R + ++ Y+ D +R RLL A+EE++L+ I DL
Sbjct: 47 AQSDEDDLKSGKVAKSRTRTAGKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADL 106
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE +RE L P ++WA A ++ + +RRL G K+KM+ SN+RLV+SIA
Sbjct: 107 LELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIA 166
Query: 383 KNYQGAG 389
K Y G
Sbjct: 167 KKYMNRG 173
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +RE
Sbjct: 59 KSGKAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 RLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 177
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ LS++
Sbjct: 48 STRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQL 107
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P ++WA + + R RL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 108 EREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRG 160
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G
Sbjct: 117 QLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRG 175
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 14/115 (12%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
STSRR+ S++ YL+ S S LLT +E++L+ IQDL+ LEG+RE L E
Sbjct: 247 STSRRQTDSMKT--------YLKDIGSVS-LLTGEQEVELAMRIQDLVYLEGVREQLEEE 297
Query: 336 CGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++ WA AA V +REL+ RL+ G K++MI +N+RLV+SIAK Y
Sbjct: 298 AKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRY 352
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLT EE+ + +Q + LE L+E L+E G PT AQWA AA
Sbjct: 9 DPVRAYLREIGRVP-LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAK 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ Q+ELR + G K KM+ +N+RLV+S+AK Y
Sbjct: 68 MTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKY 102
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 62/112 (55%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 56 SRRRVQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLD 115
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P +WAA A + + R RL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 116 REPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRG 167
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G
Sbjct: 117 QLLEEYNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRG 175
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%)
Query: 277 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
+ RRK + ++ D +R RLL A+EE++L+ I DLL+LE +R L+E+
Sbjct: 56 SGRRKAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQL 115
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT A+WA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 116 EREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 168
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 271 SVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 328
+VK+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 56 AVKAGKAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 115
Query: 329 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
+ L ++ P ++WA A + ++ R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 116 GDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 175
Query: 389 G 389
G
Sbjct: 176 G 176
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLT EE+ S +Q ++ LE L+ L+E PT +WA AA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ Q+EL++R++ G K KM+ +N+RLV+S+AK Y
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKY 102
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 281
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 103 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 157
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD----------------LLKL 325
+ + ++ +P + ++ LTA EE L + IQ L+K+
Sbjct: 158 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKI 217
Query: 326 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
E L +CG PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y
Sbjct: 218 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 277
Query: 386 QGAG 389
+G G
Sbjct: 278 EGYG 281
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 17/170 (10%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRKRPSVQEVDYSDPLR 295
E Q + VRS R ER+++R A + A+V S + + + + ++ +P +
Sbjct: 152 ELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFK 211
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQD----------------LLKLEGLREVLSERCGGS 339
++ LTA EE L + IQ L+K+E L +CG
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYG 321
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
K ST RR+ + ++ D +R RLL A EE++L+ I DLL+LE RE L
Sbjct: 47 KKLSTIRRQETNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKL 106
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ P +WAA+ ++ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 107 WQELKRIPNDREWAASVEMELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRG 163
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 62/113 (54%)
Query: 277 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
T+RR+ S ++ D +R RLL A+EE++L+ I DLL+LE + + L +R
Sbjct: 46 TARRRGQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRL 105
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P +WA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 106 EREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRG 158
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 55/98 (56%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL+LE R L G PT +WA +
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 143 PLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 180
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQWAAA 348
+D +R S LL A +E++L+ IQDL+ LE +RE L E G T QWA+A
Sbjct: 14 TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASA 73
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AG++ + L +RL G K++MI +N+RLV+SIAK Y
Sbjct: 74 AGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKY 110
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYL+ LLT +E+ L +Q L+KLE +R+ L+E PT A+WA A +
Sbjct: 13 RYLKGIGRFP-LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPE 71
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
L++ + G KDKM+ SN+RLV+SIAK Y+G+
Sbjct: 72 ALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGS 105
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ L ++
Sbjct: 55 STRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQL 114
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P +WA ++ R+RL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 115 EREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRG 167
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ QREL+++L G K KM+ +N+RLV+S+AK Y
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKY 102
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I +LL+LE + E L +
Sbjct: 58 STRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQL 117
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
P ++WA A + + R RL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 118 DREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRG 170
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD +R YLR S LLT +E+QL +Q +++LE +++ L++ CG P+ W AA
Sbjct: 21 SDNVRLYLR-DIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAA 79
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
++ EL+ L G K KMIT+N+RLV++IAK Y+
Sbjct: 80 DLEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYR 116
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L E + G P +WAA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 231
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAA + S+K G V D +R RLL +EE++L+ I DL
Sbjct: 173 EKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 223
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE L G P +WAA + + RRRL G K+KM+ SN+RLV+SIA
Sbjct: 224 LQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 283
Query: 383 KNYQGAG 389
K Y G
Sbjct: 284 KKYMNRG 290
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AA + + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LLT EE+ + +Q L+ LE LRE + E G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+RE R + G K KM+ +N+RLV+S+AK Y
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKY 102
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRG 160
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRG 160
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AA + + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
K+G R+R + ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 47 KAGKAKGRRRATAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDR 106
Query: 332 LSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+SE+ P + WA+ + R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 107 ISEQLDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYM 166
Query: 387 GAG 389
G
Sbjct: 167 NRG 169
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L E + G P +WA+ +
Sbjct: 151 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEM 210
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 211 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 248
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ QR+L+++L G K KM+ +N+RLV+S+AK Y
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKY 102
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 41 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 100
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 101 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRG 159
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
T A + AA + S+K G V D +R RLL +EE++L+
Sbjct: 67 TVAKDGKAAKLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARK 117
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
I DLL LE L + E G P +WA + + RRRL G K+KM+ SN+RLV
Sbjct: 118 IADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLV 177
Query: 379 ISIAKNYQGAG 389
+SIAK Y G
Sbjct: 178 VSIAKKYMNRG 188
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 56 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 116 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRG 174
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRSYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 274 SGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
G+ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 58 GGAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKL 117
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 118 IEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRG 174
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 18/153 (11%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMS-------VKSGSTSRRKRPSVQEVDYSDPLRY 296
+ V + ++ ERK+RR RA+ + S ++SGS ++P+V +
Sbjct: 204 VVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGS----EKPTVSSGKKA----- 254
Query: 297 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 356
+ + S RL+ A E +++ GI+ L LE +R L E + + WA AAG+D + L
Sbjct: 255 --SKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVL 312
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+++L++G C+D++I S LV+ A+NY+G G
Sbjct: 313 QQQLSFGWYCRDELIKSTRSLVLYFARNYRGTG 345
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
IQ+L+KLEG + L +CG PT +WA A G+ REL+ + G C++KM SN RLV
Sbjct: 5 IQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLV 64
Query: 379 ISIAKNYQGAG 389
I +A+ Y+G G
Sbjct: 65 IHVARKYEGCG 75
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +LRR L G K KM+ +N+RLV+S+AK Y
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKY 102
>gi|168029696|ref|XP_001767361.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens]
gi|162681425|gb|EDQ67852.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
Length = 632
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 53/80 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L+ ++ + KLE L++VL ++ G PT +WAAAAGVD +RRRL G
Sbjct: 334 LLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMRRRLALGRA 393
Query: 366 CKDKMITSNIRLVISIAKNY 385
+ K+I N+RLV+S A Y
Sbjct: 394 ARTKLIQRNLRLVLSQAYKY 413
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ L+ +Q + L L+E LSE+ PT +W+ A ++ EL ++N G +
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQ 115
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLT EE QL + IQ+L +LE ++ L + G PT A+WA G+ L+ +L
Sbjct: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+K+I +N+R+V+ +AKNY G G
Sbjct: 68 GTRSKEKLIHANLRMVVHVAKNYLGRG 94
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRG 186
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRG 171
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRG 186
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ +Q L+KL L+E L G + QWA AA V EL+R++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI +N+RLV+S+AK YQ G
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRG 146
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P +WAA +
Sbjct: 154 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDM 213
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 214 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 251
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG-GSP---TFAQWAA 347
D +R RLL A+EE++L+ I DLL+LE RE L+ G P + + WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRG 199
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +QDL+KL+ +R+ L+E+ P A+W+ AA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEA 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L R G P +WAA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K KM+ SN+RLV+SIAK Y G
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRG 247
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLT EE+ + +Q + LE RE+ ++ G PT QWA AA
Sbjct: 9 DPVRSYLREIGRVP-LLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAAR 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ +REL + G K KM+ +N+RLV+S+AK Y
Sbjct: 68 ISRRELHSAIASGEAAKRKMVEANLRLVVSVAKKY 102
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRG 159
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRG 153
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 205
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 265 AAANVMSVKSGSTSRRK-------RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 316
A + V+ G + R RPS ++ D D + + LL A+EE++L+
Sbjct: 36 AVGEIEDVEIGGSEDRDGDSLAAARPSGYRKTDSDDAVGAFFKEMARYPLLKADEEVELA 95
Query: 317 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
+Q L++++ L+E LS + T A+ AAA G+ +R+L ++L G + K KMI SN+R
Sbjct: 96 KRVQFLVEVDNLQESLSSKLNRRATQAETAAAFGLTERQLEQKLYQGRVAKRKMIRSNLR 155
Query: 377 LVISIAKNYQGAG 389
LV+SIAK Y G
Sbjct: 156 LVVSIAKRYLNRG 168
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 205
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 14/182 (7%)
Query: 210 PEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV 269
P+ +QQ + + P EE E++ SQ + VRS + ERK +R RA+EK +
Sbjct: 141 PDSSLLDQQIIEFDPETTPLDEE----EQEDSQVVVVRSGKSEERKLKRVRASEKGSR-- 194
Query: 270 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS--SSRLLTANEEMQLSAGIQDLLKLEG 327
+SVK +RP S +++ S R + E+ L A I++ LE
Sbjct: 195 ISVKVNP----RRPKKSSRKASSS-QFISEWKSHPGRRRIIVREQSALLATIKECASLEK 249
Query: 328 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
+RE + + G ++ +WA AAG+D+ EL RL G C+++++ + LV IA++Y G
Sbjct: 250 IREKMVKE-GQEVSYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTG 308
Query: 388 AG 389
G
Sbjct: 309 MG 310
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 230
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 258
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 234
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
+A ++RA + +N K SR+ + SV+E + D + Y T + LL NEE+
Sbjct: 114 RAIKSRATKPGNSNGEPPKP--VSRKIKASVRETGF-DSMHYYMKTMGNHELLQKNEEII 170
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR--ELRRRLNYGILCKDKMIT 372
L+ IQ L+ EG R+ L PT+ +WAA+ + +L+R++ + K +
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLVISIAK YQ G
Sbjct: 231 SNLRLVISIAKRYQNRG 247
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ IQ L ++E LR E G P A+ A A G+ +R+L +RL+ +
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRG 150
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A K A + S+K G V D +R RLL +EE++L+ I D
Sbjct: 139 AAKTAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIAD 189
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LL+LE L G P +WA + + RRRL G K+KM+ SN+RLV+SI
Sbjct: 190 LLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSI 249
Query: 382 AKNYQGAG 389
AK Y G
Sbjct: 250 AKKYMNRG 257
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 238
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LLT EE+ + +Q L+ LE LR+ + E G PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++EL+ + G K KM+ +N+RLV+S+AK Y
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKY 102
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ +Q L++L L E L+E+ PT A+WA AG++ EL + + G
Sbjct: 51 LLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTR 110
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 111 SKRKMIEANLRLVVSVAKKYQ 131
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 57/98 (58%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A EE++L+ I DLL+LE +R+ LS+ P A WAAA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 163
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 238
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE LRE L R GG+ P+ + AAAAG+ LR+RL+ G
Sbjct: 60 LLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLHAGR 119
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 120 RAKERMVAANLRLVVSVAKKY 140
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 237
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSA 317
TR A +A + + + R P V D +R YLR LLT +E+ L
Sbjct: 7 TRPAALQSAPALDSRQAPIAVRTLPPVD----GDLVRSYLR-DIGRVPLLTHEQEITLGR 61
Query: 318 GIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
+Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G K++M+ +N+R
Sbjct: 62 QVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLR 121
Query: 377 LVISIAKNY 385
LV+S+AK Y
Sbjct: 122 LVVSVAKKY 130
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 245
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSS 303
+ V+S ++ E K RR R A + S+ T + + + + +S L T +
Sbjct: 197 VVVQSSKKKENKTRRKREFVSTAVSSQSL----TLKANQEDL--LGFSASLVKRAPNTKN 250
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
R+L A E ++S G++ L +LE +R + E + + WA A+GVD++ L++ L+ G
Sbjct: 251 KRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRG 310
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAG 389
C+D++I S LV+ +A+ Y+G G
Sbjct: 311 YYCQDELIRSTRSLVLYLARKYRGMG 336
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 44/158 (27%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 336 CGGSPTFAQWA----AAAGVDQR------------------------------------- 354
P QW ++QR
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 355 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRG 201
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 372 TSNIRLVISIAKNYQGAG 389
S LV+ +A+NY+G G
Sbjct: 338 KSTRSLVLFLARNYRGMG 355
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 222
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA+ Y G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLG 280
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA+ Y G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLG 280
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAA 348
SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +WAAA
Sbjct: 9 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAA 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AG+ ELR++ + G K KMI +N+RLV+S+AK Y
Sbjct: 68 AGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKY 104
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA+A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 227
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 94 RAKERMVAANLRLVVSVAKKY 114
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 275 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
G SRR R V++ Y+ D +R RLL A+EE++L+ I DLL++E +R+ L
Sbjct: 86 GRASRR-RTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLC 144
Query: 334 ERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
+ G + + WA G+ R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 145 QELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNR 204
Query: 389 G 389
G
Sbjct: 205 G 205
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE + G P+ +WAA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 212
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 372 TSNIRLVISIAKNYQGAG 389
S LV+ +A+NY+G G
Sbjct: 338 KSTRSLVLFLARNYRGLG 355
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAA 348
SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +WAAA
Sbjct: 15 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAA 73
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AG+ ELR++ + G K KMI +N+RLV+S+AK Y
Sbjct: 74 AGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKY 110
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+KL+ +R+ L+E+ P A+W+AAA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEA 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAA 348
SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +WAAA
Sbjct: 9 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAA 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AG+ ELR++ + G K KMI +N+RLV+S+AK Y
Sbjct: 68 AGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKY 104
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG-LREVLSERCGGSPTF 342
S Q+VD YL+ S S LL ANEE+QL+ IQDL+ LE +E++++ G+
Sbjct: 373 SAQQVDSMKV--YLKEIGSVS-LLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPI 429
Query: 343 AQ----------WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AQ WA G+ + EL RL G K+ MI +N+RLV+SIAK Y
Sbjct: 430 AQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRY 482
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT A+W A G + Q++ RL+ G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRG 154
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA-- 349
D ++Y T + LL NEE+ L+ IQ L+K E +RE L + PT+ +WA A
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ ++++++ + K + SN+RLVISIAK YQG G
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRG 100
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQ 117
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQ 105
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQ 105
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P ++WA+AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + EL R + G K+KM+ +N+RLV+S+AK Y
Sbjct: 67 KITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKY 102
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q +K+E ++E L ++ G PT +QWA AA + ELR + G
Sbjct: 23 LLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQAGEA 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQ 117
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L ++ +RE LS+R G P +WA AA + + EL+ +N G L
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 66/160 (41%), Gaps = 46/160 (28%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 336 CGGSPTFAQWA----------------AAAGVDQR------------------------- 354
PT QW +A D +
Sbjct: 104 LDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLES 163
Query: 355 -----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 164 KAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRG 203
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 8/146 (5%)
Query: 245 AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
VR+ ++ ERK RR RAA S+ S +VQ + P R ++SSS
Sbjct: 206 VVRTGKKEERKFRRERAASDNGKKTTSLSLPS------KTVQN-NLPKPTFVKRTSSSSS 258
Query: 305 RL-LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
R L A E +++ G++ LE +R L E G + + WA A G+D++ L+++L +G
Sbjct: 259 RRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFG 318
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAG 389
C+D++I + LV+ IA+NY+G G
Sbjct: 319 WYCRDELIKNTHSLVLYIARNYRGMG 344
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 99 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 158
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 159 AKQKMIEANLRLVVSIAKKYQ 179
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R + G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDREIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQ 105
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ +Q L++++ + E L + G PT A+ A A + +R+ RL G +
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRG 159
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 192 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 250
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA Y G
Sbjct: 251 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLG 284
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y + S +RL EE+ L+ I LL LE + E L E+ SP +WA A + + E
Sbjct: 192 YYKQVNSFARL-HPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWE 250
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L RL G K++M+T+N+RLV S+AK YQ G
Sbjct: 251 LCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRG 284
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 292 DPLR-----YLR--ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
DPLR +++ + T + R + A E+++S G++ L +LE +R + E + +
Sbjct: 235 DPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSS 294
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA +GVD++ L+++L +G C+D++I S LV+ A+ Y+G G
Sbjct: 295 WAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMG 339
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P +WA AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + ELRR + G K+KM+ +N+RLV+S+AK Y
Sbjct: 67 KISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKY 102
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D D + L S LL EE++L+ IQ+L+ E L E L+ G +PT ++ A A
Sbjct: 67 DIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVA 126
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
AG + +L RL+ K +MI+SN+RLV+SIAK Y G
Sbjct: 127 AGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRG 167
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 37 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 95
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA Y G
Sbjct: 96 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLG 129
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
D +R+ +LL EE+QL+ I LL+ E ++ L E+ G PT +W+AA
Sbjct: 83 DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACK 142
Query: 351 V-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ D ++ + L K++MI +N+RLV+SIAK Y G
Sbjct: 143 ISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRG 182
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
R K A + S+K G V D +R RLL +EE++L+ I
Sbjct: 99 RKDAKGAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKI 149
Query: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
DLL+LE G P +WAA + + RRRL G K+KM+ SN+RLV+
Sbjct: 150 ADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVV 209
Query: 380 SIAKNYQGAG 389
SIAK Y G
Sbjct: 210 SIAKKYMNRG 219
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 284
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 195 DPEPETTPLDAGQED-SQMVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 252
Query: 285 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
++ S + ++ R++ E+ L + I++ LE +RE + + G ++ +
Sbjct: 253 -RKASSSQFISEWKSHPGQRRIIV-REQSALLSTIKECAGLEKIREKMVKE-GQEVSYHR 309
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G
Sbjct: 310 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMG 354
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 5/165 (3%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 284
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 195 DPEPETTPLDAGQED-SQVVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 252
Query: 285 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
++ S + ++ R++ E+ L + I++ LE +RE + + G ++ +
Sbjct: 253 -RKASSSQFISEWKSHPGQRRIIV-REQSALLSTIKECAGLEKIREKMVKE-GQEVSYHR 309
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G
Sbjct: 310 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMG 354
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 57/131 (43%), Gaps = 37/131 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT---------- 341
D +R RLL A+EE++L+ I DLL LE LR R G + T
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRA----RMGAAGTDMHSDVADLL 116
Query: 342 -----------------------FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
+WA AAG+ + R R+ YG KDKM+ SN+RLV
Sbjct: 117 GDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLV 176
Query: 379 ISIAKNYQGAG 389
+SIAK Y G
Sbjct: 177 VSIAKKYMNRG 187
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQ 353
RYL+ S LL A +E++L+ I+ KLE ++E + + G PT +WA AA + D
Sbjct: 116 RYLQEIGEIS-LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDA 174
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
ELR + G L +D+++ +N+R V+++AK Y
Sbjct: 175 EELRHMVRVGTLARDRLVRANLRWVVAVAKKY 206
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 208 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 266
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 267 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 300
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 284
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 192 DPEPETTPLDAGQED-SQVVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 249
Query: 285 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
++ S + ++ R++ + LS I++ LE +RE + + G ++ +
Sbjct: 250 -RKASSSQFISEWKSHPGQRRIIVREQSALLST-IKECAGLEKIREKMVKE-GQEVSYHR 306
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G
Sbjct: 307 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMG 351
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 68/171 (39%), Gaps = 46/171 (26%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
A A+ + + SRR+ P ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AEADGKKTRKITASRRRDPGKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 325 LEGLREVLSERCGGSPTFAQWAA-------------AAGVDQRE---------------- 355
LE +RE L E PT QW A ++E
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEII 152
Query: 356 -----------------LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRG 203
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L L ++E L+E+ G PT +W+ AAG+ EL++ + G
Sbjct: 23 LLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGET 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +E R+ L+ G SPT + AA + +EL R+L+ G L
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K +MI SN+RLV+SIAK Y G
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRG 161
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L+ IQ+L+ LE RE L ++ P+ +WA AA + ++ L +++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+SIAK Y
Sbjct: 83 AKRKMVEANLRLVVSIAKKY 102
>gi|414878913|tpg|DAA56044.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878914|tpg|DAA56045.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878915|tpg|DAA56046.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
Length = 287
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SN RLVISIA+ Y G
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLG 276
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
D +R YLR +LL EE++LS + L+ LE + E G SPT ++WA G
Sbjct: 276 DTIRSYLREI-GRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCG 334
Query: 351 V--DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D +LR + G K++M+T+N+RLV+SIAK Y G
Sbjct: 335 YGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRG 375
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+ E ++S G++ + +E +R L E G + + WA AAG++++ L R L+YG C+D
Sbjct: 272 SKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRD 331
Query: 369 KMITSNIRLVISIAKNYQGAG 389
+++ S LV+ +A+NY+G G
Sbjct: 332 ELLKSTRSLVLFLARNYRGLG 352
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 299
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + IQ+L+ LE +E L+++ PT +WA AA + ++ L+ ++ G
Sbjct: 23 LLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQGEK 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+SIAK Y
Sbjct: 83 AKRRMVEANLRLVVSIAKKY 102
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
+S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++ S
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 375 IRLVISIAKNYQGAG 389
LV+ +A+NY+G G
Sbjct: 61 RSLVLFLARNYRGLG 75
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++E + G K KM+ +N+RLV+S+AK Y
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKY 102
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L + G P+ Q A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 100 AKERMVAANLRLVVSVAKKY 119
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ L+ +Q + L ++E LS++ PT +W+ A ++ EL +++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQ 124
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +QDL+ +E ++ L R G P+ + A A+G+ +L+R+L +G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 97 AKERMVAANLRLVVSVAKKY 116
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L+ +RE L ER PT +WA AAGV + +L + + G L
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 83 AKRRMVEANLRLVVSVAKKY 102
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 149 YLRGTVSKE-LLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 207
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA+ Y G
Sbjct: 208 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLG 241
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++E + G K KM+ +N+RLV+S+AK Y
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKY 102
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q + L +++ L E+ G PT++QWA A + +EL+ L G
Sbjct: 23 LLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEA 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
L+ A E ++S G++ + LE +RE L + G + + WA AA VD ++L+++L +G
Sbjct: 263 LIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSF 322
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
C+D+++ S LV+ +AK Y+ +G
Sbjct: 323 CRDELLRSTNSLVVFLAKKYRCSG 346
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 76 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 134
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 135 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 168
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 108 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 166
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 167 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 200
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SN RLVISIA+ Y G
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLG 276
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
++Q+ D D +R+ RLL +EE+QL+ I LL E ++ L ++ PT +
Sbjct: 107 NIQKAD--DSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNS 164
Query: 344 QWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+W AA V D R+ R L+ K++M+ +N+RLV+SIAK Y G
Sbjct: 165 EWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRG 211
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L G P+ A AG+ REL +RL G+
Sbjct: 33 LLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVR 92
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+++N+RLV+S+AK Y
Sbjct: 93 AKERMVSANLRLVVSVAKKY 112
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 60 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 118
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 119 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 152
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 94 RAKERMVAANLRLVVSVAKKY 114
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQ 117
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQ 119
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 86 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 144
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SN RLVISIA+ Y G
Sbjct: 145 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLG 178
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L+ L+ ++ L E G +W+ AAG+ + EL +L +G
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+++AK YQ
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQ 112
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R +LL EE++LS + L+ LE ++ E+ G SPT +WA G
Sbjct: 406 DTIRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGY 465
Query: 352 --DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D LR+ + G K++M+T+N+RLV+SIAK Y G
Sbjct: 466 GEDVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRG 505
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
++LLT EE +L IQ L+ G R+ L+ G +PTF++WA + + EL L G
Sbjct: 20 AKLLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVG 79
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAG 389
K M+ +N+R+VISIA+ YQ G
Sbjct: 80 GAAKKTMVEANMRMVISIARKYQHLG 105
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 30 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 88
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R++ L ++ + SN+RLVISIA+ Y G
Sbjct: 89 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLG 122
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER--CG-GSPTFAQWAAA 348
D +R RLL A+EE++L+ I DLL+LE + L+E+ C WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + + RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRG 180
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 18 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 77
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 78 RAKERMVAANLRLVVSVAKKY 98
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ +Q ++ L+G+ E L + PT +WA AA + + EL R L G
Sbjct: 31 LLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQGRQ 90
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 91 AKQKMIEANLRLVVAIAKKYQ 111
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+ L + LLTA EE++L+ +Q+L+ L+ L + L + PT A+ AAA G
Sbjct: 44 DDPVGALFKEMARYPLLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALG 103
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + +L++ + K KMI+SN+RLV+SIAK Y G
Sbjct: 104 ISETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRG 142
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA+ Y G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLG 286
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L+ ++E L + G PT +WA AA + EL +N G +
Sbjct: 23 LLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINAGEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ +E L++R G P++A+WA AGV +EL++ L G
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQT 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 84 AKRKMVEANLRLVVSVAKKY 103
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SNIRLVISIA+ Y G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLG 286
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ L+ +Q L++++ L+E L G P A+ A + +R+L RL G +
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ L ++ LS G P F+QWA A ++++EL++ + L
Sbjct: 23 LLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIATAEL 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 259 TRAAEKAAANVMSVKSGST-SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
T A + AA KSG T + RPS +VD YLR LL+ +E+ L
Sbjct: 14 TVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGR 70
Query: 318 GIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
+Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G K++M+ +N+R
Sbjct: 71 QVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLR 130
Query: 377 LVISIAKNY 385
LV+S+AK Y
Sbjct: 131 LVVSVAKKY 139
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L++R G P+ +WA ++++ L++ L G
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMIT+N+RLV+SIAK YQ
Sbjct: 94 AKHKMITANLRLVVSIAKQYQ 114
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+ L+ ++ +++ E +R+ L E+ +P+ +WA A G+ REL + L G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRG 160
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+ L + LLTA EE++L+ +Q+L+ L+ + + L + PT A+ AAA G
Sbjct: 44 DDPVGALFKEMARYPLLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALG 103
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + +L++ + K KMI+SN+RLV+SIAK Y G
Sbjct: 104 ISETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRG 142
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
RPS +VD YLR LL+ +E+ L +Q+L++LE + L E+ GG
Sbjct: 38 RPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAV 94
Query: 342 FA-QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
A + A AAG+ +L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 95 LAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKY 139
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMIT+N+RLV+SIAK YQ
Sbjct: 94 AKHKMITANLRLVVSIAKQYQ 114
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR + S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 219 YLRGSVSKE-LLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 277
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++ + SN+RLVISIA+ Y G
Sbjct: 278 LRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLG 311
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
Q+ +K+E L +SE+ G PTF +WA A ++ +ELRR+L + C+ M++SN+ LVI
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 380 SIAKNYQGAG 389
+A+ + G
Sbjct: 61 KVARKFGLKG 70
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 49/78 (62%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++S G++ + +E +R L E G + + WA AAG++Q+ L L++G C+D+++
Sbjct: 274 EAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELV 333
Query: 372 TSNIRLVISIAKNYQGAG 389
S LV+ +A+NY+G G
Sbjct: 334 KSTRSLVLFLARNYRGLG 351
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
S Q+ Y D + + LL +EE++L+ ++ E R+ L+E+ G PT
Sbjct: 56 SSQKSKYEDTVGAFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQ 115
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
Q A A + +EL R+L G + K +MI SN+RLV+SIAK Y G
Sbjct: 116 QLAEALEMGVKELDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRG 161
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ I+ L ++E LR L++ G P+ A+ A A G+ +R+L +L+ +
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRG 192
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 31/174 (17%)
Query: 217 QQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGS 276
++P N DLE + ++ S+ IA K A+ + S +
Sbjct: 24 EEPQNLKGDLESSKKD-------SSEKIA------------------KLASKLASTPRRT 58
Query: 277 TSR-RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
R RK+P + D +R RLL A EE++L+ I DLL+LE +RE + +
Sbjct: 59 AERGRKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDE 113
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ A+W ++ R RRRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 LDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRG 167
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+D +R YLR LLT +E+ +Q L+ L ++ L E G P+ +WA AA
Sbjct: 8 TDTVRTYLREIGRVP-LLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+D+ +L++ ++ G K +M+ +N+RLV+S+AK Y
Sbjct: 67 NIDELQLQKTISAGENAKRRMVEANLRLVVSVAKKY 102
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL A EE++L+ +Q LL++E ++ L E +P+ A+ A A G + ++ RL+ G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRG 159
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE L ++ ++K E + E LS G SP+ A+WAAA R R +
Sbjct: 4 LLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACS--PRLFREMMLTAKE 61
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K +M+ N+RLV+SIA+ Y G G
Sbjct: 62 AKQRMVQCNMRLVVSIARRYHGVG 85
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D ++ R L+ K++M+ +N+RLV+SIAK Y G
Sbjct: 190 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRG 228
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE+ L+ +Q +L++E + E L + P+ A+ A + G+++++L RL +
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRG 158
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+QL+ ++ L E R L+E G SP+ +WAA + REL +L G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRG 158
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L ++ ++ L E+ G PT Q AA + +++L RL G +
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 133 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 192
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D ++ R L+ K++M+ +N+RLV+SIAK Y G
Sbjct: 193 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRG 231
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D ++ R L+ K++M+ +N+RLV+SIAK Y G
Sbjct: 190 SDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRG 228
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 53/85 (62%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
R + A E ++S GI+ + +LE ++ L + G + + WA AAG+D++ L+ L++G
Sbjct: 250 RAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGW 309
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
C+D+++ S LV+ +++ Y+G G
Sbjct: 310 YCRDELLKSGRSLVLYLSRYYRGLG 334
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQ 129
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L++L L E L+ G PT A+ A A + +L L G
Sbjct: 30 LLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRKGQR 89
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 90 AKQKMIEANLRLVVSVAKKYQ 110
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ ++ ++ + LRE L E G P++A WA G+D L+ ++ G
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KMI +N+RLV+SIAK Y
Sbjct: 82 AKSKMIEANLRLVVSIAKKY 101
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++ L+E L G PT AQ A + +++L RL G +
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRG 173
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL ANEE++L+ I+ L+ + L E L+ G P ++ A A G+ + EL + GI+
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI+SN+RLV+SIAK Y G
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRG 116
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 53/98 (54%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DL +LE R L G PT +WA G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 174
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 65/160 (40%), Gaps = 46/160 (28%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ S ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 48 SASRRRDTSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 107
Query: 336 CGGSPTFAQWA------------------------------------------AAAGVDQ 353
P QWA ++Q
Sbjct: 108 LDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQEKKTISNLEKIWELEQ 167
Query: 354 R----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + +RRL G KDKM+ SN+RLV+SIAK Y G
Sbjct: 168 KSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRG 207
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L + G P+ A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 100 AKERMVAANLRLVVSVAKKY 119
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+QL+ ++ L E R L E+ G SPT +WA+ G++ ++L L G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRG 150
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 236 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 294
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 525 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 579
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 580 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLL-KDGSEVSHASWAKAAGIDEA 632
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR RL G C+++++ + LV IAK Y G G
Sbjct: 633 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMG 667
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+E+ PT ++WAA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITLGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE+ L+ ++ L++++ L L E+ PT A+ AAA + +R+L L G +
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRG 158
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L R+ L++ G TF +WAAA + EL L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQ 94
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 236 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 294
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 442 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 496
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 497 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 549
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR RL G C+++++ + LV IAK Y G G
Sbjct: 550 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMG 584
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD S LL+A EE++LS I+DL++LE +++ L+ R G P +WA AAG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 351 VDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ R+ G + +++ SN+R V+SIAK Y
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKY 197
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L++L L++ L + G S T + AAA + +++L+ R+ G +
Sbjct: 74 LLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQV 133
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 134 AKSKMIRSNLRLVVSIAKRYLNRG 157
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G PT +WAAA+ ++ EL + + G +
Sbjct: 23 LLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAVGEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
K ST R RP V D +R LLT EE+ +Q ++K ++ L
Sbjct: 9 KDQSTKRNTRPGVS----VDTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKL 64
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ P+ +WA + + EL R L+ G K KMI +N+RLV+SIAK YQ
Sbjct: 65 TKKLEHEPSKTEWANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQ 118
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++SAG + + +E +R L E G + + WA AAG+++ L R L+YG C+D+++
Sbjct: 269 EAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMNEILLMRNLHYGWYCRDELL 328
Query: 372 TSNIRLVISIAKNYQGAG 389
S LV+ +++NY+G G
Sbjct: 329 KSTRSLVLFLSRNYRGLG 346
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ ++E LS + PT +WAA+AG++ EL + + G +
Sbjct: 23 LLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIALGEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L + + L E+ G P+ A+ AA + +R+L RL G +
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRG 172
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE L L ++ GG +WA AAG+ +L+R+L G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 82 RAKERMVAANLRLVVSVAKKY 102
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L LE RE L+E +PT A+WAAA + + +L + G
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 82 AKRRMVEANLRLVVSVAKKY 101
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL EE++L+ ++ +++ E +R+ L E+ PT +W A ++ R+L RL G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRG 153
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q + L L+ + E G P+ +WA AA +D L ++L+ G
Sbjct: 32 LLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K +MI +N+RLV++IAK YQ
Sbjct: 92 AKRQMIEANLRLVVAIAKKYQ 112
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+R+R+ G +++++ SN+RLV++IA Y+
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRYK 163
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 358
LL +EE+ L+ +QD +KL LR L + G PT A+W A A + +L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ MI +N+RLV+S+AK YQ G
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRG 150
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L+ E R L E PT A+WA A + ++R+L RL G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRG 160
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q L++LE + L E+ + A+WA AA V +LR+ ++ G +
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KMI +N+RLV+S+AK Y
Sbjct: 83 AKRKMIEANLRLVVSVAKKY 102
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA-------AGVDQRELRR 358
LL +EE+ L+ +QD +KL +R L + G PT A+WAA A + +L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ MI +N+RLV+S+AK YQ G
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRG 148
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q+L++L RE L ER TF++WA A + ++ELRR + G
Sbjct: 32 LLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKLSEKELRRAVAVGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D +R LL+ EE+ + ++ L++L ++E L+E+ P+ + WA A
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+ +L+ L+ G + + KMI +N+RLV++IAK YQ
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQ 115
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA+EE L IQ ++K E + E LS + PT +WAAA G + +
Sbjct: 11 LLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSRE 70
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K +M+ SN+RLV+SIA+ Y G
Sbjct: 71 AKQRMVQSNMRLVVSIARKYSNVG 94
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L++LE + L E+ GG A + A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 85 RAKERMVAANLRLVVSVAKKY 105
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 21/171 (12%)
Query: 236 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSD-P 293
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ + P
Sbjct: 631 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYP 687
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQ---------------DLLKLEGLREVLSERCGG 338
R S LL + AG+Q + LE +RE L + G
Sbjct: 688 GRRRSIVREQSALLVTIKRRSADAGVQWKASAAEERRRASAAECANLEKIRENLLKD-GS 746
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ A WA AAG+D+ LR RL G C+++++ + LV IAK Y G G
Sbjct: 747 EVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMG 797
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQ 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L+R L G K KMI +N+RLV++IAK YQ
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIAKKYQ 112
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD +R YLR LLT +E+ +Q L L ++ L+ R G +P+F +WA A+
Sbjct: 8 SDLVRTYLREIGRVP-LLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQAS 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ EL++ + G K KM+ +N+RLV+S+AK Y
Sbjct: 67 QLSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKY 102
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 236 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 294
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 200 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 254
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 255 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 307
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR RL G C+++++ + LV IAK Y G G
Sbjct: 308 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMG 342
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 97 AKERMVAANLRLVVSVAKKY 116
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G PT +WAA+A V+ EL + G +
Sbjct: 37 LLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAEGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 97 AKRRMVEANLRLVVSVAKKY 116
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 97 AKERMVAANLRLVVSVAKKY 116
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+ +E LSE+ PT +WA A G++ L L G
Sbjct: 38 LLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTR 97
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 98 AKRKMIEANLRLVVSVAKKYQ 118
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G PT +WAA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RRRL K+KM+ SN+RLV+SIAK Y G
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRG 225
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 11/154 (7%)
Query: 236 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR 295
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++
Sbjct: 200 LEEQ-NVVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFI--AEWKN 254
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 255 Y-----PGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEAL 308
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR RL G C+++++ + LV IAK Y G G
Sbjct: 309 LRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMG 342
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L++ E R+ L PT +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRG 157
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G+
Sbjct: 32 LLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQKGVQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQG 387
K KMI +N+RLV+SIAK YQG
Sbjct: 92 AKQKMIAANLRLVVSIAKKYQG 113
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 282 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
RPS + +Y D + + LL +EE++L+ ++ L ++ ++ L + G P
Sbjct: 66 RPSGYNKTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQP 125
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
T A AA + +++L RL G + K KMI SN+RLV+SIAK Y G
Sbjct: 126 TKASIAAHLQITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRG 174
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L +++L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 84 AKRQMVEANLRLVVSVAKKY 103
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++KL +E L+++ G + +W G+ + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 LKKTVLEGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L++ E R+ L + P+ +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRG 157
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L LE +E L E+ G PT +WA A+ + + EL+ + G
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQT 94
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 95 AKRKMVEANLRLVVSVAKKY 114
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ +Q + L+ L++ L E PT A+WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGA 388
KM+ SN+RLV+SIAK Y A
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKA 105
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 243
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ + +E LSE+ PT +WA +++ L ++L+ G +
Sbjct: 37 LLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQGQI 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQ 117
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 266
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 274 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 47 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 106
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ G PT AQ AA + +++L RL G + K KMI SN+RLV+SIAK Y G
Sbjct: 107 QLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRG 163
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 26/133 (19%)
Query: 283 PSVQEVDYS--DP------------------------LRYLRATTSSSRLLTANEEMQLS 316
PS++E+DYS DP LR+ +LT EE+ LS
Sbjct: 289 PSIRELDYSEDDPSDNEPLAWETYPETPRARSSESSTLRWYLRMIGRVDMLTPEEEVSLS 348
Query: 317 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
I LL E R L +PT + A GVD RR L KD+M+ +N+R
Sbjct: 349 RQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARRAKDRMVAANLR 408
Query: 377 LVISIAKNYQGAG 389
LV+SIAK Y G
Sbjct: 409 LVVSIAKRYMRKG 421
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P+ +WA + E+ + + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQ 112
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E G P+ ++ AA + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRG 174
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++ L+ L + G PT AQ A + +++L RL G +
Sbjct: 92 LLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGRV 151
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 152 AKRKMIRSNLRLVVSIAKRYLNRG 175
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +EVL+++ P+ +WAA + E
Sbjct: 23 YLREIGRVP-LLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L L++ + + G P+ +WA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQGQQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQ 112
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 243 SIAVRSRRQT-ERKARRTR----AAEKAAANVMSVKSGSTSRRKR----PSVQEVDYSDP 293
S A R++R+T +R + +T+ AE +A + S + SRR R + +D
Sbjct: 212 STAPRAKRKTVKRVSTKTQLTGIVAEPGSAQEANEASAAESRRNRRIARKNADTKKQTDS 271
Query: 294 LR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGV 351
++ YL+ + S LLT EE++L+ IQDL+ L + E L E GG PT WA +
Sbjct: 272 MKTYLKDIGTVS-LLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNI 330
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++EL RRL G K+ MI +N+RLV+SIAK Y
Sbjct: 331 TEQELERRLEEGKRAKNAMIQANLRLVVSIAKRY 364
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%)
Query: 286 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 345
++V+ D +R LL+ +E+ +Q ++ L +E L+E PT +W
Sbjct: 12 KKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEW 71
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
A AA EL++ ++ G K KMI +N+RLV++IAK YQ
Sbjct: 72 AQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE+ +Q L L+ + L+E G PT +WA A + + EL+R + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 84 AKRKMVEANLRLVVSVAKKY 103
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L++ G P+ +WA ++++ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+E PT +WA +++ L++ +N G
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTR 116
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 117 AKRKMIEANLRLVVAIAKKYQ 137
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + +RE L+ PT A+WAAAA + + EL + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 80 AKRKMVEANLRLVVSVAKKY 99
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 5/114 (4%)
Query: 272 VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
VKS R+ P+ +VD YLR LL+ +E+ L +Q+L+ LE L
Sbjct: 26 VKSAVVPARQLPA--DVDLVRS--YLRDIGRVP-LLSHEQEITLGRQVQELMSLEQLESE 80
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
L + G + + A AAG+ + +L+++L G K++M+++N+RLV+S+AK Y
Sbjct: 81 LEGKTGAPASRKELAKAAGLSELQLKKKLQIGRRAKERMVSANLRLVVSVAKKY 134
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ ++ +++ E +++ L P A+ A G+ +R+L RL G +
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRG 169
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 100 AKERMVAANLRLVVSVAKKY 119
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 85 RAKERMVAANLRLVVSVAKKY 105
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
++PL T +LL +EE+ L IQ L+LE +R+ L G +P+ +WA+
Sbjct: 225 ANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLH 284
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + EL R L K+ MI++N+RLV+S+A+ Y+G G
Sbjct: 285 LTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRG 323
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L + G P +WA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRG 256
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q +++L +E L++ PT +WA + + EL+R ++ G
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQ 119
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + +L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 84 AKRQMVEANLRLVVSVAKKY 103
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L ++E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQ 112
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E+ G S T + A +++++L RL G +
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRG 181
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSV------KSGSTSRR-KRPSVQEVDYSDP 293
S S + R+RR R+ R A + + + +++ + G RR K VQ DY
Sbjct: 302 SGSPSARTRRLESRQRRVAIAGKPTSPDALTIHPLKKYQKGERVRRVKFDGVQ--DYLTT 359
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
YLR T + LLT EE+ LS ++ L L R+ L+ G P+ +WA +
Sbjct: 360 --YLREITKIN-LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSV 416
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R+L +DKM+ +N+RLV+S+AK Y G
Sbjct: 417 GDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFG 452
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +EE+ +Q ++ L ++ L++ P+ +WAA + ++E
Sbjct: 23 YLREIGRVP-LLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+ + + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VTQIVAQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 97 AKRKMVEANLRLVVSVAKKY 116
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L +E L + + E +PT + A A + + + RL Y
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRG 176
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 184
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D +D +R LLT +E+ ++ L L+ ++E L ++ G PTF++WA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + +L+ + G K KM+ +N+RLV+++AK Y
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKY 102
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ ++ ++++E E SE PT A+ A A G + +LR++L
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K +MI SN+RLV+SIAK Y G
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRG 252
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L+ L + L + PT +WAAA G+ + EL + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 63 AKHRMVEANLRLVVSVAKKY 82
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+
Sbjct: 4 YLRDIGRVP-LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSAL 62
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 63 QLKRKLQAGRRAKERMVAANLRLVVSVAKKY 93
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 345
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRG 191
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L+ L++ L E+ P ++WA A + +L++ L G
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 366 CKDKMITSNIRLVISIAKNYQGA 388
KM+ SN+RLV+SIAK Y A
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKA 105
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+++N+RLV+S+AK Y
Sbjct: 85 AKERMVSANLRLVVSVAKKY 104
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R T + LL NEE+ L +Q L++ E RE L PT+ +WA
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 352 DQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D +L++++ + K + SNIRLV+SIAK YQ G
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRG 100
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L++L RE L+ SPT +WA A + +L + G
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQ 112
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LLTA EE+ L+ ++ L E ++ L + +P+ + A A G++ +R+L RL G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRG 148
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 183
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+ +RE L+ + PT +WA AA +D EL + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L+ LE L E+ GG A+ A AAG+
Sbjct: 16 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAV 74
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 75 QLKRKLQAGRRAKERMVAANLRLVVSVAKKY 105
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQ 119
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L L++ + G P+ +WAA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQGQQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQ 112
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA---QWAAA 348
D +R RLL A+EE++L+ I DLL+LE RE L+ P +WA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ E R+RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRG 181
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQ 119
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L G + L++ PT +WA+ + EL++ ++ G
Sbjct: 38 LLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQGTR 97
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 98 AKRKMIEANLRLVVAIAKKYQ 118
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT+++E+ +Q ++ +EG ++ LS++ P A+ A + E
Sbjct: 12 YLREIGQFP-LLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNKSETE 70
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+ + L G K KM+T+N+RLV+SIAK YQ
Sbjct: 71 VTQILQLGQRAKQKMVTANLRLVVSIAKKYQ 101
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L ++ L+ L+ + G PT + A+ + +++L RL G +
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRG 163
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 180
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 330
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 331 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE L L ++ GG + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 99 RAKERMVAANLRLVVSVAKKY 119
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 330
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 331 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 100 AKERMVAANLRLVVSVAKKY 119
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L + G P+ Q A+ + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRG 174
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 180
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
A +V+ SG+ SRR++ ++ D + + LL+A EE+ L+ ++ L
Sbjct: 28 AHFSVIEDDSGTKSRRQKTKIE-----DSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSD 82
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGILCKDKMITSNIRLVISIAK 383
E ++ L + +P+ + A A G++ +R+L RL G K KMI SN+RLV+SIAK
Sbjct: 83 CEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAK 142
Query: 384 NYQGAG 389
Y G
Sbjct: 143 RYLNRG 148
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
D L + T + LL +EE+ L IQ + E R+ L G P+ +WA A G
Sbjct: 48 GDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALG 107
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+D+ EL + L+ K M+ +N+RLV+S+AK Y+
Sbjct: 108 MDREELVKELSRASKAKMAMLAANLRLVVSVAKRYR 143
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 345
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRG 190
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ + +Q ++ + +E L+E+ PT +WA + + L ++L+ G +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQ 117
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 39/137 (28%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAG 389
SN+RLV+SIAK Y G
Sbjct: 187 SNLRLVVSIAKKYMNRG 203
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 180
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 364
LLT EE+ + IQ ++ L +++ L+E G P ++WA AA + REL + + G
Sbjct: 22 LLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGE 81
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 82 RAKRKMVEANLRLVVSVAKKY 102
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL+ +EE+ L+ +Q L+ L R L G P+ +WA A G + LR R+ +
Sbjct: 17 LLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMK 76
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
C++++I N+RLV+S+AK Y G
Sbjct: 77 ACREELIQRNLRLVLSVAKRYGDCG 101
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L +E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQ 112
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E+ G S + ++ A+ +++++L RL G +
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRG 184
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 181
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+ + G P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 274 SGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
+ + + RP++ ++D +R LLT +E+ +Q ++ L +E ++
Sbjct: 4 ANTVENKNRPTL----HTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIA 59
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
E G P+ +WA + + +L + L G K KMI +N+RLV+SIAK YQ
Sbjct: 60 ETLGREPSQQEWAEGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQ 112
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L L+E L + G PT +W+ AA +D+ L + G +
Sbjct: 23 LLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 83 AKRRMVEANLRLVVSVAKKY 102
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++E L+ L++ G P A A A + + ++R+ L G
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K +MI SN+RLV+SIAK Y G
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRG 177
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+++E+ +Q ++ +E ++ LS++ PT A+ A + E+ + L G
Sbjct: 14 LLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSETEVNQILQQGQR 73
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMIT+N+RLV+S+AK YQ
Sbjct: 74 AKQKMITANLRLVVSVAKKYQ 94
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE++ +Q L+ +RE L+ + G PT +WA + +D +L + G +
Sbjct: 37 LLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 97 AKRRMVEANLRLVVSVAKKY 116
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RRRL G K+KM+ SN+RLV+SIAK Y G
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRG 181
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+++N+RLV+S+AK Y
Sbjct: 100 AKERMVSANLRLVVSVAKKY 119
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
+Y D + + LL +EE++L+ ++ L ++ + E+ G P A A
Sbjct: 63 EYDDAVGAFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKE 122
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ Q++L RL G + K KMI SN+RLV+SIAK Y G
Sbjct: 123 MGIVQKQLEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRG 163
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+ G P +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 270 MSVKSGSTSRRKRPSV---QEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 325
M+V++ TS RK V + +D +R YLR LL+ ++E+ L +Q+L+ L
Sbjct: 1 MAVQAEITSSRKIIPVTLEKSTSDNDLIRSYLRDIGRVP-LLSNDQEITLGRHVQELMAL 59
Query: 326 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
E L + G P + A+AAG+ L+++ G K++M+ +N+RLV+SIAK Y
Sbjct: 60 ENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRLGERAKERMVAANLRLVVSIAKKY 119
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RL++S+AK Y
Sbjct: 97 AKRKMVEANLRLLVSVAKKY 116
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRAT 300
S + VRS + ERK +R R+ EK + + VK+ S ++K + +
Sbjct: 632 SDRLIVRSGKSQERKLKRIRSLEKVSG--VCVKASSRKQKKSCKSSSSQFIAEWK----N 685
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
R E+ L I++ LE +RE + + G ++ +WA AAGVD+ L+ RL
Sbjct: 686 YPGRRRSIVREQSALLMTIKECANLEKIRENMVKE-GQEVSYDRWAKAAGVDEAVLKSRL 744
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
G C+++++ + LV IA+ Y G G
Sbjct: 745 QAGYFCRERLLVTTEWLVKYIARTYTGMG 773
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+++N+RLV+S+AK Y
Sbjct: 85 AKERMVSANLRLVVSVAKKY 104
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L+++E + L ++ P + A G+ ++L +L G +
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRG 185
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE+L+ + G PT +WA A ++ EL + + +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 97 AKRKMVEANLRLVVSVAKKY 116
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 97 AKRKMVEANLRLVVSVAKKY 116
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G P +WAAA ++ L + G +
Sbjct: 54 LLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIADGEI 113
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 114 AKRKMVEANLRLVVSVAKKY 133
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIADGEI 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQ 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKN 384
L+R L G K KMI +N+RLV++IA+N
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIARN 110
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 276 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
+T+ +RP V D +R YLR LL+ +E+ L +Q+L++LE
Sbjct: 3 TTAVDQRPPVD----GDLVRSYLRDIGRVP-LLSHEQEITLGRQVQELVRLEEAEAEFKM 57
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
R G P+ + A++ G+ LRRRL G K++M+ +N+RLV+S+AK Y
Sbjct: 58 RQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKY 108
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGIL 365
L+ EE+ + IQ L E R+ +SE G +PT A+WA A G D E R++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
KDK+I SN+RLV IA+ Y G
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYG 302
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ L +E L+ + PT +W + ++ L ++L+ G
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQ 117
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+R + G + +++ SN+RLV++IA Y+
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRYK 163
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LLT +E+ +Q L L+ +RE L G PT +WA A+ + D EL + + G
Sbjct: 23 LLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIAAGE 82
Query: 365 LCKDKMITSNIRLVISIAKNY 385
L K KM+ +N+RLV+S+AK Y
Sbjct: 83 LAKRKMVEANLRLVVSVAKKY 103
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 24 LLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 84 AKRKMVEANLRLVVSVAKKY 103
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D +D +R LLT +E+ +Q ++ +E L ++ PT +WA A
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
G +L+ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQ 119
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+Q +Q L +R+ L + G P+ +WA AA ++ EL + G
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGET 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 97 AKRKMVEANLRLVVSVAKKY 116
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LLT EE+ + +Q L+ LE L+E L ++ G PT ++WAA
Sbjct: 6 NFTDPVRAYLREIGRVP-LLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAA 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AA + + ELR + G K KM+ +N+RLV+S+AK Y
Sbjct: 65 AAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKY 102
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ PT +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L ++ G K KMI +N+RLV++IAK YQ
Sbjct: 82 LNLTVHQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ +Q + L+ L++ L PT +WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGA 388
KM+ SN+RLV+SIAK Y A
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKA 105
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L ++ P+ +WAA + E
Sbjct: 23 YLREIGRVP-LLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VKQTVQQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE++ +Q L +RE L+ + P +WAAAA ++ EL + G
Sbjct: 23 LLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAEGET 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L +++ L+ L G P+ + A+ + +++L RL G +
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 96 AKRKMVEANLRLVVSVAKKY 115
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 96 AKRKMVEANLRLVVSVAKKY 115
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +EVL+++ P ++WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VQQTVAQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|299473209|emb|CBN78785.1| RNA polymerase [Ectocarpus siliculosus]
Length = 627
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA-AGVDQRE-LRRRLNYG 363
LLT EE++L +Q+LL+ E +R L + G + T +WAA A +D E L R +
Sbjct: 173 LLTRTEEIELGRKVQELLRWERVRMFLELQLGRAATMEEWAAELATMDGVEGLEREIGIM 232
Query: 364 ILCKDKMITSNIRLVISIA--KNYQGA 388
+D+MI+ N+RLV+ IA K Y+GA
Sbjct: 233 KAARDRMISCNLRLVVHIARRKFYKGA 259
>gi|449018705|dbj|BAM82107.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 459
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 296 YLRATTSSSRLLTANEEM-QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
Y+R R+ ++EE+ +LS QD L R+ L G PT A+WAAA +
Sbjct: 109 YVREICKLDRI--SDEEVARLSRATQDYCALLKQRDELRNTLGREPTNAEWAAAVDAPEE 166
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
E+++R+ G +++++ +N+RLV++IA Y+
Sbjct: 167 EIQQRVERGRRARERLVAANLRLVLAIANRYK 198
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQ 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
L++ L G KM+ SN+RLV+SIAK Y A
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKA 105
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT +E+ +Q ++ L+ +E L+++ PT A+ A+ + + EL+ ++ G
Sbjct: 32 MLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSEDELKGIMHRGRR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+SIAK YQ
Sbjct: 92 AKQKMIEANLRLVVSIAKKYQ 112
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQ 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
L++ L G KM+ SN+RLV+SIAK Y A
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKA 105
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q + L+ R L P+ +WA AAG+ EL + ++ G L
Sbjct: 23 LLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDAGDL 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 83 AKRRMVEANLRLVVSVAKKY 102
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF---AQWAAAAGVDQRELRRR 359
S RLL A+EE+ L+ +Q L E +R L E G + A WA A V +LR
Sbjct: 67 SGRLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAA 126
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ G+ + + ++N+RLV+SIAK Y+ G
Sbjct: 127 RSRGVDARSTLTSANLRLVVSIAKRYRFCG 156
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA +G+D +EL++RL G +D+MI +N+RLV+++AK YQ G
Sbjct: 112 YTLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRG 159
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WAA + +
Sbjct: 23 YLREIGRVP-LLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETD 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VKQTVTQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 97 AKRKMVEANLRLVVSVAKKY 116
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + L+ G PT +WA AAG+ + EL+R ++ G
Sbjct: 24 LLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHAGER 83
Query: 366 CKDKMITSNIRLVISIAKNY 385
K M+ +N+RLV+S+AK Y
Sbjct: 84 AKRMMVEANLRLVVSVAKKY 103
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L + G + +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
+ RR + K + + + S++ RP++ + L+ S LL+ E ++
Sbjct: 154 RQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVR 213
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L LE + L +R G P+ Q A + + + ELR R+ L ++K+ SN
Sbjct: 214 LSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSN 273
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 274 VRLVMSIAQRYDNMG 288
>gi|318040246|ref|ZP_07972202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 107
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L+ LE RE L R GG PT AQ A AA + ++L++RL G
Sbjct: 35 LLTHEQEITLGRQVQELMALEEQREELRLRAGGEDPTDAQLAEAAQLTPQQLKKRLRSGQ 94
Query: 365 LCKDKMITSNIRL 377
K++M+ +N+RL
Sbjct: 95 RAKERMVAANLRL 107
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ ++ L+ +E +++ L G PT W+ AA + EL+ + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K +M+ +N+RLV+S+AK Y
Sbjct: 83 AKRQMVEANLRLVVSVAKKY 102
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L ++ PT +W A + E
Sbjct: 26 YLREIGRVP-LLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAE 84
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L + G K KMI +N+RLV++IAK YQ
Sbjct: 85 LNDLIRKGQRAKQKMIEANLRLVVAIAKKYQ 115
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQ 112
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQ 112
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+E LS G + Q A + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRG 162
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 10/100 (10%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R YLR LL EE+ L+ +Q+ E+L +R G T WA
Sbjct: 19 SDPIRLYLREIGRVD-LLRQEEEILLARLVQER------EELLRQRGDGELT--AWAGRC 69
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
GV +LR+ L+ G K++M+ +N+RLV+++AK YQ G
Sbjct: 70 GVPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRG 109
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
L+ EE + I L +LE +RE L + G P +WA A + ELR +L G
Sbjct: 356 LSLVEEKVICEEIARLTRLEAVREDLRRKMGRLPRENEWAWEANLSVSELRGKLIKGRRA 415
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
K++M+ +N+RLVI AK Y+ G
Sbjct: 416 KNRMVAANLRLVICFAKRYRNRG 438
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE+ +Q ++ L ++E ++ PT +WA A G++ L + G
Sbjct: 41 LLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTR 100
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+S+AK YQ
Sbjct: 101 AKRKMIEANLRLVVSVAKKYQ 121
>gi|302793696|ref|XP_002978613.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
gi|300153962|gb|EFJ20599.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
Length = 458
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
R LT+ EE++L + + L +R L P+ +WA AA D R LRRRL G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATAANTDFRTLRRRLQLGE 217
Query: 365 LCKDKMITSNIRLVISIAKNYQ 386
++K+I N RLV+ +A+ Y+
Sbjct: 218 AAQNKLIEHNCRLVLFLARRYE 239
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQ 353
R+LRA LLTA+EE+ L +Q+ L E L R GG +P+ WA++ +
Sbjct: 17 RHLRAIGRVP-LLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSP 75
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAK 383
R+L+R+L ++M+T+N+RLV+S+A+
Sbjct: 76 RQLQRQLRLAERASEQMVTANLRLVVSLAR 105
>gi|407327705|dbj|BAM45410.1| sigma factor 5 [Marchantia polymorpha]
Length = 635
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+A EE L++ ++ KLE + + E G P+ +WA AA +D L+R++ G
Sbjct: 335 LLSAEEEYSLASLMKPAKKLEKTFKAIGEELGRDPSDEEWAKAAQLDVHTLKRQVLLGRA 394
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
++K+I N+RLV+ A YQ
Sbjct: 395 ARNKLIQHNLRLVLFQAHKYQ 415
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + L+ L+E L+ PT +WA A ++ ++L + G +
Sbjct: 27 LLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEKGEV 86
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 87 AKRKMVEANLRLVVSVAKKY 106
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 18/101 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + AT LLT EE++L +Q ++ L +G RE G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLTEDGSREF----EDGELTTAQ---- 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKG 100
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 262 AEKAAANVMSVKS------GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315
A K A +M G+ R+R S +S YL RL + EE ++
Sbjct: 225 AAKTVARIMDYSDSYWSDHGNKKNRRRRSTNSDSFST---YLTEIGKVHRL-SLEEEKEI 280
Query: 316 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375
I LE +RE L R G P +WA + ELR +L G K++M+ +N+
Sbjct: 281 CQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRAKNRMVAANL 340
Query: 376 RLVISIAKNYQGAG 389
RLVI AK ++ G
Sbjct: 341 RLVICFAKRFRNRG 354
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 18/101 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + AT LLT EE++L +Q ++ +G RE+ G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMAFTEDGSREI----EDGELTTAQ---- 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKG 100
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSP 340
R S EVD YLR LL+ +E+ L +Q+L+ LE L E+ +R
Sbjct: 18 RASGAEVDLVRS--YLR-DIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQV 74
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ A AAGV +L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 75 AREEVAKAAGVSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKY 119
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LL+ EE++ +Q + L +RE L+ + G PT +WA A+ ++ E
Sbjct: 14 YLREIGKVP-LLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLE 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNY 385
L + + K +M+ +N+RLV+S+AK Y
Sbjct: 73 LNQAIADADEAKRRMVEANLRLVVSVAKKY 102
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 29/147 (19%)
Query: 272 VKSGSTSRRKRPSVQEVDYSDPL----RYLRATTSSSRLLTANEEMQLSA---GIQDLLK 324
+++GS + R +Q++ D L L A R + EE L+ IQ LL+
Sbjct: 1 MRTGSGNDLLRLYLQDIGRVDLLTNEEEVLLARQVQQREVLLAEERALAGEHPTIQRLLE 60
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVDQ----------------------RELRRRLNY 362
LE L++ + PT +WA AAG+ Q +EL++RL
Sbjct: 61 LEQLQQREANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKELQKRLRE 120
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G +D+MI +N+RLV+++AK YQ G
Sbjct: 121 GRRARDRMIQANLRLVVTVAKKYQQRG 147
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ + +E L+++ PT +WA+ + + +
Sbjct: 24 YLREIGRVP-LLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEAD 82
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L + G K KMI +N+RLV++IAK YQ
Sbjct: 83 LHDTVRRGQRAKQKMIEANLRLVVAIAKKYQ 113
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ L+ +Q ++LE ++ L+ + PT ++WA A G+ +L ++ G
Sbjct: 198 LLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPTRSEWANATGLSLSQLEDAISKGRK 257
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
+ ++ SN+RLV+SIAK YQ G
Sbjct: 258 AQKSLVYSNLRLVVSIAKIYQHRG 281
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + E
Sbjct: 48 YLREIGRVP-LLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETE 106
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 107 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQ 137
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ G +WA +D EL + G
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|113954655|ref|YP_729975.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113882006|gb|ABI46964.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 313
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLTA EE++L +Q ++L ++ SP ++++
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMEL-------TQDGSVSPDSEEFSSKD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K +M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKG 101
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++KL +E L E G T +W AG+ Q EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV
Sbjct: 16 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAA 74
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 75 QLKRKLQAGRRAKERMVAANLRLVVSVAKKY 105
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRG 159
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRG 159
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
+V D + L + + LL+++EE L+ +Q L EG+R L+ G PT
Sbjct: 126 AVSYKDRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTEL 185
Query: 344 QWAAAAGV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+W AAA + + + + K MI +N+RLV+SI+K YQ G
Sbjct: 186 EWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRG 236
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LL+ +E+ +Q ++ L +E L + P+ ++WAA + E
Sbjct: 23 YLREIGRVP-LLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L + G K KMI +N+RLV++IAK YQ
Sbjct: 82 LNHLMVQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I L++ +E L+ G P+ +WA+ AGVD
Sbjct: 115 RYLRL-----RVVLANAAKQGDEIIAPYLRIIEAQERLASELGHRPSMERWASTAGVDVF 169
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL++ L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 170 ELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKEHMIKANLRLVVSVAKKYQNRG 226
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ +Q ++ L +E L+++ PT +WA + + L+++L G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+++AK YQ
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQ 119
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q ++ L+E GS TF
Sbjct: 17 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMM-------TLTE--DGSKTFEDHELTG- 66
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ RR L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 67 ----KQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S LLT E +QLS IQ L LE + L ER G P+ Q A + + + +
Sbjct: 196 YVKGVVSE-ELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSRTD 254
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ L L ++++ SN+RLV+SIA+ Y G
Sbjct: 255 LQSTLIECSLARERLAMSNVRLVMSIAQRYDNVG 288
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 235 LLEEQVSQSIAVRSRRQ------TERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV 288
+LE+Q + S R +R+ T + RR ++ VM+ KS S R +
Sbjct: 185 MLEKQWNLSFKARQKRREVTCSGTSARQRRISGRKR----VMNEKSKSRVR------AAL 234
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
+ L+ S LLT + + LS I+ L LE + L ER G PT Q AA+
Sbjct: 235 GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAAS 294
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + EL+ +L L ++K+ SN+RLV+SIA+ Y G
Sbjct: 295 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMG 335
>gi|302774234|ref|XP_002970534.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
gi|300162050|gb|EFJ28664.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
Length = 458
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
R LT+ EE++L + + L +R L P+ +WA A D R LRRRL G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATTANTDFRTLRRRLQLGE 217
Query: 365 LCKDKMITSNIRLVISIAKNYQ 386
++K+I N RLV+ +A+ Y+
Sbjct: 218 AAQNKLIEHNCRLVLFLARRYE 239
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+ + P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 305 RLLTANEEMQLSAG--IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-- 360
RLL +E + G IQ +++ R+ L+ G P+ +WA AAGVD EL+ L
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 361 --------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRG 198
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ PT +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
L + G K KMI +N+RLV++IAK YQ
Sbjct: 82 LPETIKRGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L + L+E+ PT +W D+ L + ++ G
Sbjct: 32 LLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQGTW 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G
Sbjct: 157 QWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRG 202
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 96 AKRKMVEANLRLVVSVAKKY 115
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + +
Sbjct: 23 YLREIGRVP-LLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETD 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+++ + G K KMI +N+RLV++IAK YQ
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQ 112
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+D +R YLR LLT +E+ +Q + L+ +++ L+++ G P+ +WA A+
Sbjct: 12 TDLIRIYLREIGRVP-LLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKAS 70
Query: 350 G-VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
G +D +L + + G K K++ +N+RLV+SIAK Y
Sbjct: 71 GKLDNTQLTQAIADGESAKRKIVEANLRLVVSIAKKY 107
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + AN Q A + L+L ++E L+ G P+ +WAA AGV
Sbjct: 89 RYLRMRT-----VLANAAKQGDAVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLS 143
Query: 355 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRG 200
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-WAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +QDL++LE L L G + A AG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 85 RAKERMVAANLRLVVSVAKKY 105
>gi|87125501|ref|ZP_01081346.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86166801|gb|EAQ68063.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 312
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q++++L +E +P +++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQEMMRL-------TEDGTLAPDHDGFSSHD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------RRMIRVGKRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 283 PSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
PS E SD L YL R+ T EE+ L+ IQ L ++G RE L+ R G
Sbjct: 22 PSRSEAQGSDDLVDLYLNEIGRIPRV-TPEEEIHLARRIQAKLAIDGAREELAMRLGRPS 80
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
AA G D + L G+ + K+I +N+RLV+SIAK Y G
Sbjct: 81 PEEDVAAFMGRDPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIG 127
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S LL+ E + LS I+ L LE + L ER G P+ Q A + + + E
Sbjct: 191 YVKGIVSEE-LLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISRTE 249
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ L ++K+ SN+RLV+SIA+ Y G
Sbjct: 250 LRARMIECTLAREKLAMSNVRLVMSIAQKYDNLG 283
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRG 204
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT ++E+ + +Q ++ +E R L+ + PT + A + G ++ EL+ + G
Sbjct: 21 LLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEAELQSVIQQGQK 80
Query: 366 CKDKMITSNIRLVISIAKNYQG 387
K KM+T+N+RLV+S+AK YQ
Sbjct: 81 AKQKMVTANLRLVVSVAKKYQN 102
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 43/142 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 52 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 111
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ EL++ + G C K
Sbjct: 112 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 171
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
D MI +N+RLV+S+AK YQ G
Sbjct: 172 DHMIKANLRLVVSVAKKYQNRG 193
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T RL TA EE+ LS I+ L+ R+ G T QWA + +
Sbjct: 258 YLRDITKIDRL-TAEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWAGHMHMAVGD 316
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L +L+ L +D+M+ +N+RLV+S+ K Y G
Sbjct: 317 LDAQLHEAELARDRMVMANLRLVVSVVKQYNCEG 350
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
+V EVD YLR LL+ +E+ L +QDL++LE L L G
Sbjct: 26 AVAEVDLVRS--YLRDIGRVP-LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAP 82
Query: 344 Q-WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ A AG+ +L+R+L G K++M+ +N+RLV+S+AK Y
Sbjct: 83 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKY 125
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L ++ ++ +E L T +WA G+ REL+ L G
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQVE-KSYITEEEWAKEIGISVRELQLILKRGKR 78
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+KMI +N+RLV++++K YQG G
Sbjct: 79 AKEKMIQANLRLVVAVSKKYQGKG 102
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G
Sbjct: 27 LLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQGTQ 86
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KM+ +N+RLV++IAK YQ
Sbjct: 87 AKQKMMVANLRLVVAIAKKYQ 107
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ L +E L+ + PT +WA + L +L+ G
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV+++AK YQ
Sbjct: 104 AKQKMIQANLRLVVAVAKKYQ 124
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCG------GSPTFAQWAAAAGVDQRELRRR 359
LL+ +E+ L +Q ++ L ++E L+ + + A WAAAA + + EL
Sbjct: 88 LLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESELDHH 147
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQ 386
+ G K KMI +N+RLV+++AK YQ
Sbjct: 148 MRRGQRSKRKMIEANLRLVVAVAKKYQ 174
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S LLT + + LS I+ L LE + L ER G PT Q AA+ + + E
Sbjct: 185 YVKGVVSEE-LLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAE 243
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ +L L ++K+ SN+RLV+SIA+ Y G
Sbjct: 244 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMG 277
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT E +QLS I+ L LE + L ER G P+ Q A + + + +LR L L
Sbjct: 199 LLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSL 258
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++K+ SN+RLV+SIA+ Y G
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDTNG 282
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ +Q ++ L ++E L + T +WA A E+++ ++ G
Sbjct: 36 LLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKR 95
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 96 AKQKMIEANLRLVVAIAKKYQ 116
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AG+D +EL R GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 147 WAEIAGMDVQELDRIQKAGIRAKEHMIEANLRLVVSVAKKYQNRG 191
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYS----------DPLR-YLRATTSSSRLLTANEEM 313
A+ +V V+S + + ++E+D S DP+R YLR LLTA +E+
Sbjct: 94 ASIDVFDVESEKDAAKLTQQIEEIDLSKISLDKTVSSDPVRMYLREIGKVD-LLTAKQEI 152
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK---- 369
+L A + K + L++ G PT + A G+D++ ++ DK
Sbjct: 153 EL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKDWNDKQGEA 211
Query: 370 ----MITSNIRLVISIAKNYQGAG 389
+I +N+RLV+SIAK Y G G
Sbjct: 212 AERMLIQANLRLVVSIAKKYMGRG 235
>gi|148240072|ref|YP_001225459.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147848611|emb|CAK24162.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 313
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 22/103 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + AT LLT EE++L +Q L++L +G + A
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLTEDG------------------SIA 58
Query: 349 AGVDQRE--LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A DQ + RR + G K +M+ +N+RLV+S+AK YQG G
Sbjct: 59 ADSDQFDGKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKG 101
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I +L ++E LS G P+ +WA AG+D
Sbjct: 90 RYLRL-----RIVLANAAKQGDTVIVPYQRLIEVQERLSSELGHRPSLERWAKTAGIDLA 144
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 145 DLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRG 201
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G + + WA D REL+ RL G +D+MI +N+RLV+++AK YQ G
Sbjct: 107 GLTQGYETWANLISTDSRELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRG 159
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 58/103 (56%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P+ Q +D +R S LLT +E+ L +Q+L+ ++ + L + G PT
Sbjct: 4 PNDQTSSDADLVRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQ 63
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ A + + +++R++ +G K++M++SN+RLV+SIAK Y
Sbjct: 64 EELANSLDLSINQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKY 106
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA D R+L+RRL G +D+MI +N+RLV+++AK YQ G
Sbjct: 91 YQTWADLITSDSRDLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRG 138
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 43/142 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 28 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 87
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ EL++ + G C K
Sbjct: 88 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 147
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
D MI +N+RLV+S+AK YQ G
Sbjct: 148 DHMIKANLRLVVSVAKKYQNRG 169
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 361
RLL AN Q A I L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 107 RLLLANAAKQGDALIVLYLQLIEVQERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGK 166
Query: 362 -------------------YGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 167 RRWGEIAQLTVEELDEIQSQGIQAKEHMIKANLRLVVSVAKKYQNRG 213
>gi|224110206|ref|XP_002333134.1| predicted protein [Populus trichocarpa]
gi|222834948|gb|EEE73397.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT++E + L +Q + L ++E L E GG PT + A A +D ++R+++ G
Sbjct: 216 VLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRA 275
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ + K Y
Sbjct: 276 ARNKLIKHNLRLVLFVIKKY 295
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL+A EE++L+ I+ L+ E +R+ L+++ +P+ +W A Q R+ L
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K +MI SN+RLV+SIAK Y G
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRG 155
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ +N Q + L++ ++E L+ G P+ +WA+AAGV+
Sbjct: 89 RYLRM-----RIVLSNAAKQGDEILIPYLRVIEVQERLASELGHRPSIERWASAAGVEVL 143
Query: 355 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAG 389
EL++ L G + K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 ELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKEHMIKANLRLVVSVAKKYQNRG 200
>gi|88809137|ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 313
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q L++L GS AA +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQKLMQLTE---------DGSI-----AADSE 62
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + RR + G K +M+ +N+RLV+S+AK YQG G
Sbjct: 63 LFDSKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKG 101
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 263 EKAAANVMSVKSGSTSRRKR---------PSVQEVDYSDPL--RYLRATTSSSRLLTANE 311
EK V SG ++R++R +V EV++ + L Y++ S +L+ E
Sbjct: 125 EKTRKKVPVTCSGISARQRRIGAKKKTNVKAVSEVNFQNNLVKGYVKGVISD-HVLSHAE 183
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
++LS I+ L+L+ + L++R G P+ Q A + + + EL+ L L ++K+
Sbjct: 184 VVRLSKKIKSGLRLDEHKSRLTDRLGCEPSDEQLAMSLKISRAELQAWLMECHLAREKLA 243
Query: 372 TSNIRLVISIAKNYQGAG 389
SN+RLV+SIA+ Y G
Sbjct: 244 MSNVRLVMSIAQRYDNMG 261
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR-------------------- 358
+Q ++ LE +R+ L+ R P+ QWA A + ELRR
Sbjct: 89 LQAMVDLEVVRQRLASRLTHQPSHGQWAEACDLPVAELRRLLQEGHRTWAACLDLSLSDL 148
Query: 359 --RLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RL G +D+MI +N+RLV+++AK YQ G
Sbjct: 149 QQRLLRGRRARDRMIQANLRLVVAVAKKYQKRG 181
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 43/142 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 50 TDLVRLYLQEIGRVRLLGKDEEVSEAQKVQRYVQLVELRDTEAETKGGVLQTYVNLLKVR 109
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ +L++ + G C K
Sbjct: 110 DRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAELANLSVEELKQVQREGLQAK 169
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
D MI +N+RLV+S+AK YQ G
Sbjct: 170 DHMIKANLRLVVSVAKKYQNRG 191
>gi|352096241|ref|ZP_08957121.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351676935|gb|EHA60086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 313
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLTA EE++L +Q ++L +
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQ------------------DGSVS 58
Query: 351 VDQREL----RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D E RR + G K +M+ +N+RLV+S+AK YQG G
Sbjct: 59 ADSEEFSSKDRRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKG 101
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + AN Q I L+L ++E LS G P+ +WA AG++
Sbjct: 85 RYLRMRT-----VLANAAKQGDEVIVPYLRLIEVQERLSSELGHRPSLERWATTAGIELP 139
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 140 DLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRG 196
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q +++L ERC + + + +++R +R G
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLH-------ERCAMAGGVGEACSYNDIEKRTMR----VGE 64
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
KD+MIT+N+RLV+++AK YQG G
Sbjct: 65 RAKDQMITANLRLVVNLAKRYQGKG 89
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 361
RLL AN Q A + L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 110 RLLLANAAKQGDALVVPYLQLIEVQERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGK 169
Query: 362 -------------------YGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 170 RRWAEIAKLTVEELDQIQSQGIQAKEHMIKANLRLVVSVAKKYQNRG 216
>gi|224002653|ref|XP_002290998.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972774|gb|EED91105.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 345
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGIL 365
++ EE +L A Q+ ++L+ + E L + G PT +W AAAG ++ L + L GI
Sbjct: 25 VSPKEEKELGAKTQEAMRLQKMYEDLQSKHGREPTDDEWCAAAGKINMEALEQVLEEGIE 84
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K++++ SN+R+V + Y G
Sbjct: 85 AKNQLVASNLRMVQRVVNLYIRNG 108
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+QWA A +D EL GI KD+MI +N+RLV+S+AK YQ G
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEMIKANLRLVVSVAKKYQHRG 202
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
S LL+ E + LS I+ L LE + L E+ G P+ Q A + + + ELR R+
Sbjct: 197 SEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIE 256
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
L ++K+ SN+RLV+SIA+ Y G
Sbjct: 257 CSLAREKLAMSNVRLVMSIAQKYDNLG 283
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
F +WA A + ELR L+ G K +MI +N+RLV+SIAK YQ G
Sbjct: 126 FQKWAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRG 173
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 44/143 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIARFVHLIEVR 122
Query: 330 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 366
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVETIERIQAEGVEA 182
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
KD MI +N+RLV+S+AK YQ G
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRG 205
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++ ++ L G T Q A + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRG 174
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 268 VRLVMSIAQRYDNLG 282
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 44/143 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIGRFVHLIEVR 122
Query: 330 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 366
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEA 182
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
KD MI +N+RLV+S+AK YQ G
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRG 205
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 268 VRLVMSIAQRYDNLG 282
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 160 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 208
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 209 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 268
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 269 VRLVMSIAQRYDNLG 283
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 268 VRLVMSIAQRYNNLG 282
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 268 VRLVMSIAQRYDNLG 282
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA A +D +EL+ L G KD MI +N+RLV+++AK YQ G
Sbjct: 113 YEAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRG 160
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 157 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 205
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 206 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 265
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 266 VRLVMSIAQRYDNLG 280
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GVDQREL 356
IQ +++ +R+ L+ R G P+F +W A G++ +EL
Sbjct: 102 IQRYVEMIKIRDRLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKEL 161
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ GI + +MI++N+RLV+SIAK YQ G
Sbjct: 162 EQIQTEGIEARHQMISTNLRLVVSIAKKYQNRG 194
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 44/143 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q ++L EGL R
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 330 EVLSERCGGSPTFAQWAAAAGV-DQRELRR----------------------RLNYGILC 366
+ L+ + G P+ +WAA AGV + EL+R + GI
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
KD MI +N+RLV+S+AK YQ G
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRG 245
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 43/127 (33%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG---------------------SPTFAQ 344
LL +EE+ + +Q ++L LR+ +E+ GG P+ +
Sbjct: 89 LLERDEEVAEAQRVQQHMELLALRDRAAEKTGGLLATYVHLLNTRARLTAQLGHRPSLER 148
Query: 345 WAAAAGVDQRELR------RRL----------------NYGILCKDKMITSNIRLVISIA 382
WA A+GVD +L+ +RL N G K+ MI +N+RLV+S+A
Sbjct: 149 WAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVA 208
Query: 383 KNYQGAG 389
K YQ G
Sbjct: 209 KKYQNRG 215
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L + L ++ + +W+ +A + + EL R L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQ 113
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD +R LLT+++E+ + +Q ++ L+ + L+++ PT + A
Sbjct: 6 SDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELANFLN 65
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+ ++ + L G K KMIT+N+RLV+SIAK YQ
Sbjct: 66 KTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQ 101
>gi|356506634|ref|XP_003522082.1| PREDICTED: uncharacterized protein LOC100794777 [Glycine max]
Length = 196
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
L +LE +R + E + + WA +GVD++ L++ L+ G C D++I S+ LV+ +
Sbjct: 120 LAELEKIRTAIEEDTKPVASLSTWAETSGVDEKVLQQLLHCGYYCWDELIQSSRSLVVYL 179
Query: 382 AKNYQGAG 389
A+ Y+G G
Sbjct: 180 ARKYRGMG 187
>gi|75812393|ref|YP_320012.1| sigma-70 [Anabaena variabilis ATCC 29413]
gi|75705149|gb|ABA24823.1| Sigma-70 [Anabaena variabilis ATCC 29413]
Length = 314
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S +LT +E+ L+ ++ + ++ ++VL E+ Q AA G + E
Sbjct: 11 YLREI-SKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGKSETE 69
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+ + L G K+KMI +N+RLV++IAK Y
Sbjct: 70 VFQILRLGQKAKEKMIAANLRLVVAIAKKY 99
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + ++++ +L+ E++++ QD L LE ++ + PT + AAA G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D R + G+ K+ ++ SN RLV+++ K Y G G
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKG 497
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 351
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGL 181
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 219
>gi|224007213|ref|XP_002292566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971428|gb|EED89762.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 338
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ L ++ L+ LEG R L E PTFAQWA+A L++++
Sbjct: 15 LLYKEDEVLLGRQVRLLMGLEGKRRDLEEELLRPPTFAQWASATNHTVPSLKQQIRRSQR 74
Query: 366 CKDKMITSNIRLVISIAKN 384
K +I +N+RLVI++A+
Sbjct: 75 AKAALIEANLRLVITVARQ 93
>gi|219112653|ref|XP_002178078.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410963|gb|EEC50892.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 358
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 311 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGILCKDK 369
+E++L Q+ ++L+ L L+ R PT +W A AG ++ +R+ + G+ K++
Sbjct: 44 QEIELGEKTQEAIRLQRLYNTLTSRLDREPTDEEWCAEAGKINMEAIRQTIEEGLEAKNQ 103
Query: 370 MITSNIRLVISIAKNY 385
++TSN+R+V S+ Y
Sbjct: 104 LVTSNLRMVQSVVNTY 119
>gi|116073370|ref|ZP_01470632.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068675|gb|EAU74427.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 313
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q L+ L + G P + ++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMALT--------QDGTIPIDSDQFSSKD 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------RRIIRVGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|318041996|ref|ZP_07973952.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0101]
Length = 318
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q ++ L ERC + + + +++R +R G
Sbjct: 25 QLLTPEQELMLGRKVQAMV-------ALHERCHSAGGVGEACSYNDIEKRTMR----VGE 73
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
KD+MIT+N+RLV+++AK YQG G
Sbjct: 74 RAKDQMITANLRLVVNLAKRYQGKG 98
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN A I+ L+L ++E L+ G P+ +WA AG+
Sbjct: 89 RYLRM-----RIVLANAAKLGDAVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLS 143
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ L G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPTLANGKRRWAEIAKLTVEELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
R+L+ S LLTA EE+ L+ +Q ++ L E+ + W+ G+
Sbjct: 13 RFLKIIGRYS-LLTAEEELHLAHQVQRMM-------ALLEQRRQHESLEDWSRRLGIPLE 64
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL++ L G K +M+ N+RLV+SIAK Y+ G
Sbjct: 65 ELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRG 99
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA A ++ +EL R GI K++MI +N+RLV+S+AK YQ G
Sbjct: 158 WAELANLEVQELERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRG 202
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 351
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGL 181
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 219
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 17/84 (20%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 32 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 74
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K++MI +N+RLV+S+AK YQG G
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKG 98
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ I+ + L +++ + R G P AQ++ D E
Sbjct: 90 YLREIGRVP-LLTAEEEVELAKAIE--IGLYAEQKLRAARTG--PVPAQYSPEWFEDLNE 144
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L R G L K ++I SN+RLV+S+AK Y G G
Sbjct: 145 LVRE---GKLAKRRLIESNLRLVVSVAKRYLGRG 175
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 17/84 (20%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 38 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 80
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K++MI +N+RLV+S+AK YQG G
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKG 104
>gi|308205502|gb|ADO18992.1| RNA polymerase sigma 70 subunit [Nostoc flagelliforme str.
Sunitezuoqi]
Length = 165
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ +E R L+ + PT + A + G + E+ L+ G
Sbjct: 21 LLTPEQEITNARLVQQMMAIEEQRSNLALQLNREPTTRELATSLGQSEAEVESILHQGER 80
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KM+T+N+RLV++IAK YQ
Sbjct: 81 AKQKMVTANLRLVVAIAKKYQ 101
>gi|352094648|ref|ZP_08955819.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351680988|gb|EHA64120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 308
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 16 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 64
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K++MIT+N+RLV+++AK YQG G
Sbjct: 65 KAKNQMITANLRLVVNLAKRYQGKG 89
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 22/82 (26%)
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------NYGILCK 367
E L+ G P+ +WAA+AG+ EL+ RR N GI K
Sbjct: 119 ERLTSELGHRPSLERWAASAGISVMELKPALAVGKRRWAEIAKITVEELEQIQNDGIHAK 178
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
+ MI +N+RLV+S+AK YQ G
Sbjct: 179 EHMIKANLRLVVSVAKKYQNRG 200
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 351
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGL 181
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 182 EVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRG 219
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QWAA A + EL R GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 157 QWAALASLTVEELERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRG 202
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 311 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 370
EE++LS IQ L ++ R ++ G P+ + AAA + LR R+ G + K+
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 371 ITSNIRLVISIAKNYQGAG 389
I +N+RLV+S+AK Y G
Sbjct: 129 INANLRLVVSVAKKYLNRG 147
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 364
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 365 --LCK------DKMITSNIRLVISIAKNYQGAG 389
+CK D MI +N+RLV+S+AK YQ G
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRG 182
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 21/105 (20%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 346
SDP+R T RLLTA EE+ L+ I+ L KL R++ SP Q
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGLFASEKLAATRKI-------SPQLRQDL 153
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
A D G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 154 QAVEQD----------GQIAKRKLVEANLRLVVSIAKRYVGRGML 188
>gi|33862619|ref|NP_894179.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33634535|emb|CAE20521.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 313
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSL------- 51
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ +P ++ RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 52 TQDGSVAPDDKEFTTHQ-------RRMIRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 364
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 365 --LCK------DKMITSNIRLVISIAKNYQGAG 389
+CK D MI +N+RLV+S+AK YQ G
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRG 182
>gi|113953662|ref|YP_731106.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9311]
gi|113881013|gb|ABI45971.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9311]
Length = 307
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 15 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 63
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K++MIT+N+RLV+++AK YQG G
Sbjct: 64 KAKNQMITANLRLVVNLAKRYQGKG 88
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR-ELRRRLNYGI 364
LL EE+ L+ I+ L+K+E + L SPT A+ A ++ +L L G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ K KMI SN+RLV+SIAK Y G
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRG 139
>gi|124023660|ref|YP_001017967.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123963946|gb|ABM78702.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 313
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 30/121 (24%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSL------- 51
Query: 333 SERCGGSPTFAQWAAAAGVDQREL----RRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
++ +P D +E RR + G K++M+ +N+RLV+S+AK YQG
Sbjct: 52 TQDGSVAP-----------DDKEFTTHQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGK 100
Query: 389 G 389
G
Sbjct: 101 G 101
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+RELR + G KD ++ +N+RLV+S+AK Y G G
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRG 173
>gi|452821943|gb|EME28967.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 540
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 290 YSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+SD Y+ A SRLL+ EE +L+ ++ +L +++ + ++ G + +WA A
Sbjct: 218 FSDG--YIHAI-DKSRLLSQEEEAELANYLKKQTRLIDIQQRMMQKFGRKLSLEEWAIRA 274
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
G+ ++L + G K+K+IT+N+RLV SIA +
Sbjct: 275 GMSVQDLHDAIILGNNAKEKLITANLRLVHSIASRF 310
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + +T LLTA EE++L +Q ++ +E GS F
Sbjct: 17 SDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMM-------AFTE--DGSKDFK----VED 63
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ ++ RR L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 64 LTTKQ-RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L R L G P+ +WA+ A + EL + G
Sbjct: 23 LLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQGGER 82
Query: 366 CKDKMITSNIRLVISIAKNY 385
K KM+ +N+RLV+S+AK Y
Sbjct: 83 AKRKMVEANLRLVVSVAKKY 102
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+RELR + G KD ++ +N+RLV+S+AK Y G G
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRG 173
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + +T LLT EE++L +Q ++ L +G +V SE
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQVMMNLTEDGSIDVKSEEFTSHQ-------- 68
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 --------RRLIRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA A ++ REL+ L G KD MI +N+RLV+++AK YQ G
Sbjct: 203 YGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRG 250
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARPRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAG 389
+RLV+SIA+ Y G
Sbjct: 268 VRLVMSIAQRYDNLG 282
>gi|124025343|ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. NATL1A]
Length = 307
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 17/87 (19%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q ++ L+ERC GG+ ++++A ++R
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGNGPECEYSSAE-------KKRFKA 61
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKG 88
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 22/83 (26%)
Query: 329 REVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------NYGILC 366
R L + G SP+ +WAA +GV+ +L+ RR GI
Sbjct: 106 RSRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKA 165
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
KD MI +N+RLV+S+AK YQ G
Sbjct: 166 KDHMIKANLRLVVSVAKKYQNRG 188
>gi|67921071|ref|ZP_00514590.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
gi|67857188|gb|EAM52428.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
Length = 250
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+QWA A +D EL GI KD++I +N+RLV+S+AK YQ G
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEIIKANLRLVVSVAKKYQHRG 202
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I +L ++E LS G P+ +WA AG++
Sbjct: 89 RYLRL-----RIVLANAAKQGDEVIVPYQRLIEVQERLSSELGHRPSLERWATTAGIELS 143
Query: 355 ELR-------RRL---------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ RR + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 NLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|242089037|ref|XP_002440351.1| hypothetical protein SORBIDRAFT_09g030110 [Sorghum bicolor]
gi|241945636|gb|EES18781.1| hypothetical protein SORBIDRAFT_09g030110 [Sorghum bicolor]
Length = 501
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+++ +L +Q + + ++E L E PT A+ A A G+ +LRRRL+ G
Sbjct: 203 VLTSSQSARLFKTMQPMKAIFEVQESLREELQRDPTDAELAEATGMTVHQLRRRLDVGRA 262
Query: 366 CKDKMITSNIRLV-ISIAKNYQGAG 389
++K+I N+RLV +I K Y G
Sbjct: 263 ARNKLIKHNLRLVPYAINKYYPDMG 287
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 44/143 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR--------------------- 329
+D +R RLL +EE+ + +Q +KL LR
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 330 -EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL----------------------C 366
+ L+ + G P+ +WA AAG+D +L+ ++ G L
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 367 KDKMITSNIRLVISIAKNYQGAG 389
K+ MI +N+RLV+S+AK YQ G
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRG 201
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA+EE M++ AG + KLE + +
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFED-------------EKI 197
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ +QR L R G+ K ++I++N+RLV+SIAK Y G G +
Sbjct: 198 ELSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGML 242
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD +R LLT+++E+ +Q ++ ++ ++ LS++ PT A+ A
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
Q ++ + L G K KMIT+N+RLV+SIAK YQ
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQ 101
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKG 88
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P Q SDP+ + T LLT EE++L +Q +++L + P+
Sbjct: 8 PREQRRRGSDPISWYLGTIGRVPLLTPAEEIELGNQVQAMMQL------IDSGVEDPPSL 61
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
Q ++ L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 62 RQ------------KQLLRLGRRAKERMMKANLRLVVSVAKKYQGKG 96
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 43/142 (30%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL---------------------R 329
+D +R RLL +EE+ + +Q LKL L +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCK 367
E L+ G P+ +WA AG+++ EL+ L+ G + K
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
+ MI +N+RLV+S+AK YQ G
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRG 203
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q +++ L+E L E+ + T +WA V ++ L++ + G
Sbjct: 41 LLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQR 100
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 101 AKQKMIEANLRLVVAIAKKYQ 121
>gi|157412994|ref|YP_001483860.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157387569|gb|ABV50274.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 307
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKG 88
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA A ++ +EL+ L G KD MI +N+RLV+++AK YQ G
Sbjct: 91 YVAWAEQAAIEAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRG 138
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+D D + T LLTA EE++L+ +Q ++ L E+ + W+
Sbjct: 5 LDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMV-------TLLEQRQPHESVEGWSQ 57
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ EL++ L G K +M+ N+RLV+SIAK Y+ G
Sbjct: 58 RLGIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRG 99
>gi|397629977|gb|EJK69584.1| hypothetical protein THAOC_09141 [Thalassiosira oceanica]
Length = 657
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGIL 365
+T +E +L Q+ ++L+ L + L + G PT +W AAAG ++ L+ + G+
Sbjct: 337 VTPKQERELGTKTQEAMRLQKLHDELKIKYGRRPTDDEWCAAAGKINVFALKEAMQVGLE 396
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++++ SN+R+V + Y
Sbjct: 397 AKNQLVASNLRMVQRVVNMY 416
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 23/107 (21%)
Query: 306 LLTANEEMQLS-AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL---- 360
LL EE S I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 101 LLETREEFLDSHPAIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 361 ------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRG 207
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKG 88
>gi|254526924|ref|ZP_05138976.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538348|gb|EEE40801.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
Length = 307
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKG 88
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKG 88
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA+EE M++ AG KLE + L E
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRA-------- 202
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+QR L R + G+ K ++I++N+RLV+SIAK Y G G +
Sbjct: 203 -----EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGML 242
>gi|254430393|ref|ZP_05044096.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197624846|gb|EDY37405.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 302
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q + VL ERC GG A D RE +R L
Sbjct: 13 LLTPEQELTLGRKVQAM-------AVLQERCREAGGQ------GPACEYDDRE-KRVLRL 58
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQ G
Sbjct: 59 GERAKNQMITANLRLVVNLAKRYQNKG 85
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
+LTA EE+ L+ I+ +++E L + G PT +W G+ ++R+ L
Sbjct: 87 MLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGLKSIDDIRKNLKRAS 146
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K +I +N+RLV+S AK YQ G
Sbjct: 147 KSKSAIINANLRLVVSTAKAYQYRG 171
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 127 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 186
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAG 389
++++ S RLV+SIA YQG G
Sbjct: 187 RESRERINQSYRRLVVSIAARYQGKG 212
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA A V EL L GI K KMI +N+RLV+SIAK YQ G
Sbjct: 139 WANLAQVKLSELETILANGIKAKQKMINANLRLVVSIAKKYQNRG 183
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 360
I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 115 IAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKTAWAEKAELSNAEL 174
Query: 361 ----NYGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 175 DQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRG 207
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-- 352
RY+R ++ T E + I+ + L + L+ + G P+ +WA AGVD
Sbjct: 89 RYMRLLDLRAKFATPEEPV-----IEHFVHLIETHDRLASQLGHRPSLERWATTAGVDVA 143
Query: 353 ----------QR----------ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QR EL + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 TLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|87302558|ref|ZP_01085375.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
gi|87282902|gb|EAQ74859.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
Length = 307
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q ++ L+ERC + + V++R +R G
Sbjct: 16 QLLTPTQELTLGRKVQAMV-------ALNERCALAGGNGEACDYNDVERRTIR----TGE 64
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
KD+MIT+N+RLV+++AK YQG G
Sbjct: 65 RAKDQMITANLRLVVNLAKRYQGKG 89
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ L +Q ++ L +ERC GGS A D E +R L
Sbjct: 16 QLLTPEQELTLGRKVQAMVSL-------NERCAQAGGS------GPACEFDDLE-KRTLR 61
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K +M+T+N+RLV+++AK YQG G
Sbjct: 62 NGERAKQQMVTANLRLVVNLAKRYQGKG 89
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 330 EVLSERCG-----GSPTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
E LS+ CG PT QWA G+ +EL + G K+ MI +N+RLV+S
Sbjct: 150 ERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVS 209
Query: 381 IAKNYQGAG 389
+AK YQ G
Sbjct: 210 VAKKYQNRG 218
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 29/111 (26%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA+EE M++ AG++ KLE A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLE-------------------A 190
Query: 347 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
A AG + R L R N G+ K +I++N+RLV+SIAK Y G G +
Sbjct: 191 ADAGELELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGML 241
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E +SE G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 109 AKERMVAANLRLVVSVAKKY 128
>gi|255566078|ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 508
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S LL+ E ++LS I+ L LE + L ER G P+ Q A + + + E
Sbjct: 196 YVKGVVSEE-LLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPSDEQVATSLKISRAE 254
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ + L ++K+ SN+RLV+SIA+ Y G
Sbjct: 255 LQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMG 288
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + + E G P+ + +A + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 109 AKERMVAANLRLVVSVAKKY 128
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 288 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQW 345
V D LR YLR LL+ +E+ L +Q+L+ LE LRE L+ R GG P+
Sbjct: 21 VPTGDSLRSYLRDIGRVP-LLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELL 79
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
AA AG+ LR+RL+ G K++M+ +N+RLV+S+AK Y
Sbjct: 80 AAEAGLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKY 119
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 18/101 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
+DP+ + AT LLT EE++L +Q ++ L +G+ ++E+ +
Sbjct: 17 TDPISWYLATIGRVPLLTPAEEIELGNQVQVMMNLTEDGM---VNEKTKKFTSHE----- 68
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 --------RRSIRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|219124053|ref|XP_002182327.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406288|gb|EEC46228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 317
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGG---SPTFAQWAAAAGVDQRELRRRLNYG 363
LT EE Q S I+ L LRE L G PT +WAAA GV ELRR L+ G
Sbjct: 1 LTKEEEAQYSFQIRTLSAALALREQLVTLQDGMHVHPTHQEWAAACGVSAVELRRVLDEG 60
Query: 364 ILCKDKMITSNIRLVISIAK 383
+ ++ +N+ LV ++AK
Sbjct: 61 QQARAALVAANLGLVTALAK 80
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 20 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 79
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAG 389
++++ S RLV+SIA YQG G
Sbjct: 80 RESRERINQSYRRLVVSIAARYQGKG 105
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+ + T + EE++LS IQ L ++ R+ ++ G P+ A A +
Sbjct: 50 DPVDHYLNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQI 109
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LR R+ G + K+I +N+RLV+S+AK Y G
Sbjct: 110 SVSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRG 147
>gi|325673633|ref|ZP_08153324.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|325555654|gb|EGD25325.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 448
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
R S E +D L++ LLTA+EE++LS I+ L L E R
Sbjct: 138 RTSGNESAAADGLQWYLKRIRRVDLLTADEEVELSRSIEAGLYASHLLEAYPSRT----- 192
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A ++R+LR+ + G + +MI +N+RLV+S A+NY+G G
Sbjct: 193 ----TRPAPAERRDLRQIVQDGRSARTRMIEANLRLVVSTAQNYEGRG 236
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA AG++ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 153 RWAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 198
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN I L+L ++E L+ G P+ +WAA A +
Sbjct: 89 RYLRM-----RIVLANAAKLGDEVIIPYLRLVEVQERLTSELGHRPSLERWAATADIVLS 143
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+LR L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A WA G + EL + GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 155 ASWAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRG 201
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL + + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRG 200
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AG+ +EL + GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 158 WANLAGLKVQELEQIQKAGIEAKNHMIKANLRLVVSVAKRYQNRG 202
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL + + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRG 200
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RVVLANAAKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL + + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRG 200
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 25/94 (26%)
Query: 321 DLLKLEGLREV-LSE--RCGGSPTFAQWAAAAGVDQRELR-------------------- 357
D+ +LE L E L E + G P+ +QWA A G+ ELR
Sbjct: 61 DVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDMSPGD 120
Query: 358 --RRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R+L +G K++MI +N+RLV+++AK YQ G
Sbjct: 121 LQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRG 154
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA +E M++ AG++ KLE S+R + T A
Sbjct: 138 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAEKLES-----SDRGEIALTRA--- 189
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D R L R G+ K +I++N+RLV+SIAK Y G G
Sbjct: 190 -----DMRRLSRIEQVGLEAKQALISANLRLVVSIAKRYVGRG 227
>gi|72381853|ref|YP_291208.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. NATL2A]
gi|72001703|gb|AAZ57505.1| possible type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
Length = 307
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 17/87 (19%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q ++ L+ERC GG ++++A +++
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGHGPECEYSSAE-------KKKFKA 61
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKG 88
>gi|284042443|ref|YP_003392783.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283946664|gb|ADB49408.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 285
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 345 WAAAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAG 389
W ++ EL RR+ G L K++M+ SN+RLV+SIA++YQG G
Sbjct: 28 WPLLTPAEEIELARRIERGDLSAKERMVNSNLRLVMSIARHYQGQG 73
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQ----------------------WAAAAGVDQREL 356
+Q+L+ LE ++ L+ + G P Q WA + + EL
Sbjct: 67 LQELIDLEDDQQRLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAEL 126
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ L++G +D+MI +N+RLV+++AK YQ G
Sbjct: 127 KQALHHGRRARDRMIQANLRLVVAVAKKYQQRG 159
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ +E +RE+ + T Q AA + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVR---FIEEVREL---QASLQATKGQVAAELDMTEKQLESRLYQGRV 132
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K KMI SN+RLV+SIAK Y G
Sbjct: 133 AKRKMIRSNLRLVVSIAKRYLNRG 156
>gi|219125233|ref|XP_002182890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405684|gb|EEC45626.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 312
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
+T +E+QL+ IQ +L+G R L + G S T +WA G+ +ELRR +N
Sbjct: 1 VTPEQEIQLARIIQQGAQLQGSRVELENQLGRSCTKQEWADKVGLSNKELRRVVNDYRRA 60
Query: 367 KDKMITSNIRLVISIAKNYQGA 388
K ++T+N+ LV ++ G+
Sbjct: 61 KHDLVTANLGLVHAVVNQQYGS 82
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + +E+ + L L ++E L+ G P+ +WA AG++
Sbjct: 115 RYLRMRTVLADAAKEGDEI-----VAPFLNLVQVQERLTSELGHRPSLERWANTAGIELV 169
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 170 DLKPTLANGKRRWAEIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRG 226
>gi|161899381|ref|XP_001712917.1| sigma 2 transcription factor [Bigelowiella natans]
gi|75756411|gb|ABA27305.1| sigma 2 transcription factor [Bigelowiella natans]
Length = 389
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCK 367
T+ E + ++DLL+ E L L + G PT + E++ RL G + K
Sbjct: 92 TSTNESIIMEWVKDLLRWEDLFLKLENKLGFYPTIDFFTKGIIDLTSEIKERLAIGKISK 151
Query: 368 DKMITSNIRLVISIAKNYQGAG 389
+ +I +++L+ISIAK Y G G
Sbjct: 152 EILIKRSLKLIISIAKRYNGCG 173
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E P+ + AA + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSSSQIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 98 AKERMVAANLRLVVSVAKKY 117
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 22/90 (24%)
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR---------------------- 359
LKL + + L+ G PT +WAA +D+ LR++
Sbjct: 91 FLKLIEVHDRLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAV 150
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L G K+ MI +N+RLV+S+AK YQ G
Sbjct: 151 LKAGAKAKEHMIQANLRLVVSVAKKYQNRG 180
>gi|291295726|ref|YP_003507124.1| RNA polymerase sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
gi|290470685|gb|ADD28104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
Length = 507
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 56/129 (43%), Gaps = 30/129 (23%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS-------AGIQDL-----LKLEGLREVLSERCGG 338
SDP+R LLT EE+ L+ A Q L L E +R VL + G
Sbjct: 162 SDPVRQYLHEIGQVPLLTLEEEIDLARRVEEGVAAAQRLAEETGLDAELIRHVLRSQVQG 221
Query: 339 SPTFAQWAAA---------AGVD------QRELRRRLNY---GILCKDKMITSNIRLVIS 380
S A A VD RE++R L+ G +C+ +I +N+RLV+S
Sbjct: 222 SSRVASIPGTDLRIDPETIAAVDARLRALPREVKRYLHIARDGEICRQHLIEANLRLVVS 281
Query: 381 IAKNYQGAG 389
IAK Y G G
Sbjct: 282 IAKKYTGRG 290
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 298 RATTSSSR----------LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
RATT R LLT +E+ +Q + L + L E S + A WA
Sbjct: 11 RATTDLVRNYLHEIGRIPLLTHEQEVLYGKQVQQMKMLLARKVELEEINPTSISQADWAQ 70
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
A + + EL + L G K+KMI +N+RLV+S+AK Y
Sbjct: 71 AVELTESELEQALVQGQRAKNKMIQANLRLVVSVAKQY 108
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA----------------------AGV 351
Q A +Q +KL +R+ L+ + P+ +WA AG+
Sbjct: 101 QGDAQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGL 160
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 161 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 198
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + ++ LLT EE++L +Q L+ L ++ + S F
Sbjct: 17 SDPISWYLSSIGRVPLLTPAEEIELGNQVQTLMSLTEDGQIKEQ----SKEFTS------ 66
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 67 ----HQRRLIRIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA----------------------AGV 351
Q A +Q +KL +R+ L+ + P+ +WA AG+
Sbjct: 101 QGDAQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGL 160
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 161 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 198
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S +L E ++LS I+ L E + L ER G P+ Q A + + + +
Sbjct: 197 YVKGVVSDE-VLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRAD 255
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ +L L ++K+ SN+RLV+SIA+ Y G
Sbjct: 256 LQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMG 289
>gi|423348933|ref|ZP_17326589.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
gi|393703162|gb|EJD65363.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
Length = 593
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 290 SDPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHL---LDTSPAEDLTFQR------ 340
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+RELR N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 341 --RRELRWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 379
>gi|148239078|ref|YP_001224465.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847617|emb|CAK23168.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 308
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L +ERC GGS +++ ++R ++R
Sbjct: 16 QLLTPEQELTMGRKVQAMVSL-------TERCHLAGGSGPACEYSDD---EKRTIKR--- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|315226631|ref|ZP_07868419.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120763|gb|EFT83895.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 690
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 387 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 437
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 438 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGML 476
>gi|124023525|ref|YP_001017832.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. MIT 9303]
gi|123963811|gb|ABM78567.1| Putative type II alternative sigma factor, sigma70 family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 308
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L++RC GG+ +++ DQR RR
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------ALTDRCHLAGGAGPECEYSD----DQRLTIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 15/95 (15%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAAAGVDQR 354
YL+A RLLTA++E++L+ ++ L E L ++ + R P
Sbjct: 54 YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLDLPPAARGSRRPV------------- 99
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 100 ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 134
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ I+ L E + L E+ AAG++ E
Sbjct: 76 YLREIGKVP-LLTAEEEVELAKAIEAGLFAE---DKLCEK-----------KAAGIECPE 120
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
L + GI K ++I +N+RLV+SIAK Y G G +
Sbjct: 121 LEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGML 156
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ GG+P A
Sbjct: 143 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL- 193
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 194 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 228
>gi|88809561|ref|ZP_01125068.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786311|gb|EAR17471.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 211
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q + L+ERC GGS +++ D++ + +R
Sbjct: 16 QLLTPEQELTMGRKVQAM-------ATLTERCMLAGGSGPACEYSE----DEKRIIKR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|78212534|ref|YP_381313.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78196993|gb|ABB34758.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 309
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 19/89 (21%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 360
+LLT +E+ + +Q ++ ++ERC GGS +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMV-------AITERCHLAGGSGPACEYSDEEKGVIRR------ 63
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MITSN+RLV+++AK YQG G
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKG 90
>gi|123967121|ref|YP_001012202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201487|gb|ABM73095.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 339
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLTA EE++L+ +Q++ K+ + E+ ER +
Sbjct: 49 SDSIGYYLSSIGRVPLLTAAEEIELAHHVQNMKKMLKIPEI--ERSSRN----------- 95
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R + G +D+M+++N+RLV+S+AK YQ G
Sbjct: 96 ------RHLIKVGKRARDRMMSANLRLVVSVAKKYQNQG 128
>gi|325283594|ref|YP_004256135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
gi|324315403|gb|ADY26518.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
Length = 487
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQD----LLKLEGLREVLSERCGGSPTFAQWA 346
+DP+R LLT EE+ L+ I+D ++LE E L +R
Sbjct: 184 NDPVRQYLHEIGRVPLLTLEEEIALARRIEDGEFARVELEEKGEELDDRG---------- 233
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R L+RR+ G + +I +N+RLV+SIAK Y G G
Sbjct: 234 ------RRALQRRMEDGAAARQGLIEANLRLVVSIAKKYTGRG 270
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LLTA EE LS +Q L+ +E + ++R G T +WAA G R+ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+ +M+ SN RLV +A+ Y G
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRG 93
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE--RCGGSPT 341
S V+ DP+R LLTA EE+ L+ ++ LK + E+L E R G
Sbjct: 295 STDAVNIDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSE 354
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
A + + L+ G K K+ +N+RLV+SIAK Y G G +
Sbjct: 355 EDMMNLEAQI--KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGML 402
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ G+P AA
Sbjct: 109 SDLFRQYLREIGRIP-LLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAA 160
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 161 DLD-----RLVVLGRMAKRRLIEANLRLVVSVAKRYVGRG 195
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 26/115 (22%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G SRR+ SDP+ + +T LLT EE++L +Q +++L
Sbjct: 9 GGASRRR--------GSDPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLT-------- 52
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ DQ+ ++ + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 53 --------EEEPENGYTDQQ--KKTIRVGRRSKERMMKANLRLVVSVAKKYQGKG 97
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 271 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 32 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 88
Query: 331 VL-SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + R P ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 89 LPPAARGSRRPI-------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 135
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 42/141 (29%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--------------------AGIQDLLKLEGLRE 330
+D LR LLT+ EE+ LS A I+ LL LE L++
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC----------------------KD 368
+ PT +WA AA + EL R LN G +D
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 369 KMITSNIRLVISIAKNYQGAG 389
+MI +N+RLV+++AK YQ G
Sbjct: 139 RMIQANLRLVVAVAKKYQQRG 159
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA AG+ +EL + + G K+ MI +N+RLV+S+AK YQ G
Sbjct: 156 RWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRG 201
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL E + A I +L +LE L+ + + PT +WA AAG+ +L++R+ G
Sbjct: 55 LLQQRELAESDAAIGELHRLEELQRREANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQ 114
Query: 366 C----------------------KDKMITSNIRLVISIAKNYQGAG 389
KD MI +N+RLV+++AK YQ G
Sbjct: 115 AWAEQAQLEAKDVKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRG 160
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 22/98 (22%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG---VDQR---------------- 354
Q S ++ + L R+ L+ G P+ +WA AG VD +
Sbjct: 130 QASGPLERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASL 189
Query: 355 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
EL + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 190 TVAELEEAIREGLRAKEHMIKANLRLVVSVAKKYQNRG 227
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ GL +E+ GG + A
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIE-----AGL--FAAEKLGGG---RRLTVALR 143
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
VD + R G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 144 VDLEAVARD---GDVAKRKLVEANLRLVVSIAKRYVGRGML 181
>gi|78214100|ref|YP_382879.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78198559|gb|ABB36324.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 377
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ WA A ++ ++L+ L G KD MI +N+RLV+++AK YQ G
Sbjct: 113 YQAWAEQAQLEAKDLKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRG 160
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 23/106 (21%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQW 345
SDP+R YL+A RLLTA EE+ L+ I+ L KL +R SP
Sbjct: 101 SDPVRMYLKAI-GRVRLLTAEEEVDLAKRIEAGLFASEKLAAIRRT-------SPRL--- 149
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+R+L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 150 -------RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGML 188
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E L E G P+ + + + +++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 98 AKERMVAANLRLVVSVAKKY 117
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AG+ EL GI K MI +N+RLV+S+AK YQ G
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRG 188
>gi|270283843|ref|ZP_05965086.2| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
gi|270277549|gb|EFA23403.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
Length = 485
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE +FA+
Sbjct: 184 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----SFAR----- 233
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 234 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 272
>gi|379707440|ref|YP_005262645.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
gi|374844939|emb|CCF62003.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
Length = 319
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 23/99 (23%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R YLRA + LL+A EE+ L+ AG+ R+ L E GG P
Sbjct: 22 DPIRDYLRAIGRTP-LLSAEEEVALAERIAAGVL-------ARQRLDE-AGGLPP----- 67
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++R LRR + G K+ MI +N+RLV+SIA+ Y
Sbjct: 68 ----AERRALRRTVADGARAKEHMIQANLRLVVSIARRY 102
>gi|413946761|gb|AFW79410.1| hypothetical protein ZEAMMB73_457711 [Zea mays]
Length = 497
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+++ +L +Q + + +E L E PT A+ A A G+ +LRRRL+ G
Sbjct: 199 VLTSSQSARLFKTMQPMKAIFEAQESLREELQRDPTDAEVAEATGMTVHQLRRRLDVGRA 258
Query: 366 CKDKMITSNIRLV-ISIAKNYQGAG 389
++K+I N+RLV ++ K Y G
Sbjct: 259 ARNKLIKHNLRLVPYALNKYYPDMG 283
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 179 RWAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRG 224
>gi|297566693|ref|YP_003685665.1| RpoD subfamily RNA polymerase sigma-70 subunit [Meiothermus
silvanus DSM 9946]
gi|296851142|gb|ADH64157.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus
silvanus DSM 9946]
Length = 483
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 30/137 (21%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL------------LKLEGLRE 330
P V SDP+R LLT EE+ L+ ++D L+ + +R+
Sbjct: 130 PLTTRVSTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEDGVASAQFLAQETGLETDLIRQ 189
Query: 331 VLSERCGGSPTFAQWAAA---------AGVDQR------ELRRRLNY---GILCKDKMIT 372
VL + G Q VD R E++R L+ G L + +I
Sbjct: 190 VLRAQVQGGARIHQVPGMEVKLDPETITAVDSRLRALPREVKRHLHIARDGELARQHLIE 249
Query: 373 SNIRLVISIAKNYQGAG 389
+N+RLV+SIAK Y G G
Sbjct: 250 ANLRLVVSIAKKYTGRG 266
>gi|78185860|ref|YP_378294.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78170154|gb|ABB27251.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 328
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 21/100 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCGGSPTFAQWAAAA 349
+D + + ++ LLTA EE++L+ +QD+ +L+ L +E L+ R
Sbjct: 38 TDSIGFYLSSIGRVPLLTAAEEIELAHHVQDMKQLKELPQEELTSRQ------------- 84
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 85 -------KHKIRMGKRARDRMMAANLRLVVSVAKKYQNQG 117
>gi|425443241|ref|ZP_18823466.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
gi|389715506|emb|CCI00140.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
Length = 135
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA AG++ EL + G K++MI +N+RLV+S+AK YQ G
Sbjct: 39 RWAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRG 84
>gi|33862729|ref|NP_894289.1| RNA polymerase sigma-70 factor family protein [Prochlorococcus
marinus str. MIT 9313]
gi|33634645|emb|CAE20631.1| Sigma-70 factor family [Prochlorococcus marinus str. MIT 9313]
Length = 308
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L+ RC GG+ +++ DQR RR
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------ALTNRCHLAGGAGPECEYSD----DQRLTIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|332298226|ref|YP_004440148.1| RpoD subfamily RNA polymerase sigma-70 subunit [Treponema
brennaborense DSM 12168]
gi|332181329|gb|AEE17017.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Treponema
brennaborense DSM 12168]
Length = 332
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLL-KLEGLREVLSERCGGSPTFAQWAAAAG 350
DPL S +LL+ EE +A IQ+ ++ L+ L E SP + +
Sbjct: 32 DPLSLYLKQISRYKLLSVQEEQATAAAIQEHKSRIRQLKSGLLEPAENSPAYEE------ 85
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D+ L R L ++ K+KMI +N+RLV+SIAK YQ G
Sbjct: 86 IDR--LERDL---LVLKNKMIQANLRLVVSIAKRYQHRG 119
>gi|67925817|ref|ZP_00519113.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
gi|67852341|gb|EAM47804.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
Length = 386
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ REL+ L G K+KMI +N+RLV++++K YQG G
Sbjct: 7 GISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKG 46
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKIKEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AG+ EL GI K MI +N+RLV+S+AK YQ G
Sbjct: 125 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRG 169
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA EE M++ AG+ + +LE A
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEK------------------A 146
Query: 347 AAAGVD-QRELRRRLN----YGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G++ +R +RRL GI K ++I +N+RLV+SIAK Y G G +
Sbjct: 147 EDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGML 196
>gi|260435993|ref|ZP_05789963.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260413867|gb|EEX07163.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 309
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 19/89 (21%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 360
+LLT +E+ + +Q ++ + +ERC GG+ +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMVSI-------TERCHLAGGTGPACEYSDEEKGVIRR------ 63
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MITSN+RLV+++AK YQG G
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKG 90
>gi|307107488|gb|EFN55731.1| hypothetical protein CHLNCDRAFT_35462 [Chlorella variabilis]
Length = 267
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E+RRRL G+ ++ M+ N+RLV+SIAK Y G G
Sbjct: 15 EVRRRLALGLQAREHMVNCNMRLVVSIAKKYVGRG 49
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN----------------- 361
IQ L+++ + + L G P++ +WA AA + EL+ L
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 362 -----YGILCKDKMITSNIRLVISIAKNYQGAG 389
GI K++MI +N+RLV+S+AK YQ G
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRG 201
>gi|33862253|ref|NP_893814.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634471|emb|CAE20156.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 339
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLTA EE++L+ +Q++ K+ + E+ ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTAAEEIELAHHVQNMKKMLEIPEI--ERSS------------- 93
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ LR + G +D+M+++N+RLV+S+AK YQ G
Sbjct: 94 ---KHLRL-IKIGKRARDRMMSANLRLVVSVAKKYQNQG 128
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA +EL R GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 155 RWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|116075407|ref|ZP_01472667.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116067604|gb|EAU73358.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 310
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ ++ERC GG+ ++ E +R +
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------AITERCMLAGGTGPACNYS-------EEEKRTIK 61
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 62 KGEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA G+ +EL L G K+ MI +N+RLV+S+AK YQ G
Sbjct: 137 RWAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRG 182
>gi|254526617|ref|ZP_05138669.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538041|gb|EEE40494.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 339
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLT EE++L+ +Q++ KL + E +ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TERT-------------- 92
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QR L + + G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|308205773|gb|ADO19206.1| RNA polymerase sigma factor [Nostoc flagelliforme str. Sunitezuoqi]
Length = 124
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
+L +E + +L +R SP ++ +A + EL + L G L K MIT+N+RLV+++
Sbjct: 1 MLAIEQQKNLLVQRLKRSPNGSELSAQVNKTEAELTQILEQGQLAKHLMITANLRLVVAV 60
Query: 382 AKNY 385
AK Y
Sbjct: 61 AKKY 64
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+WA G+ +EL L G K+ MI +N+RLV+S+AK YQ G
Sbjct: 137 RWAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRG 182
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 313
+AAE A N+ V + S+ R+R + V DP+R LLTA EE M
Sbjct: 55 KAAEDAEVNLPKVTTRSSKVRRRSADTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 114
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
++ AG+ +LE E E G+D K ++I +
Sbjct: 115 KIEAGVAATAELEKAEEEGIELERRERRRLTRVEQVGID-------------AKQQLIEA 161
Query: 374 NIRLVISIAKNYQGAGRM 391
N+RLV+SIAK Y G G +
Sbjct: 162 NLRLVVSIAKRYVGRGML 179
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKINEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|452823970|gb|EME30976.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 547
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK-RP 283
DLE T ++L+ +S +V +R E+K+R ++V+++++G+ S R
Sbjct: 178 DLERTLDKLE-------KSYSVNTRFAKEQKSRNDELPILRNSSVVAIRNGNNSVFNLRE 230
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
++ + S +R+ NEE++L+ I+ L + + + LS+R PT
Sbjct: 231 YLENIQQSQAVRH-------------NEELKLTENIKRGLLADTMFKELSQRLNREPTVY 277
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 383
+WA A V +L + G + K ++T ++ L+ IA+
Sbjct: 278 EWADALQVSAEKLEEIMKLGRISKQALVTLHMGLIRMIAR 317
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 25/104 (24%)
Query: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR---------- 357
TA++E + IQ +KL + L+ G P+ +WA AGV +L+
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 358 ---RRLNY---------GILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ GI K+ MI +N+RLV+S+AK YQ G
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRG 198
>gi|157414303|ref|YP_001485169.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388878|gb|ABV51583.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 339
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLT EE++L+ +Q++ KL + E +ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TERT-------------- 92
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QR L + + G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|317969130|ref|ZP_07970520.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CB0205]
Length = 309
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+ + +T LLT EE++L +Q +++L E G + T +
Sbjct: 18 DPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLA------EEDKGEAYTTHE------- 64
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 65 -----KKIMRVGKRSKERMMKANLRLVVSVAKKYQGKG 97
>gi|88809396|ref|ZP_01124904.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786615|gb|EAR17774.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 339
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 23/101 (22%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + Y +T LLTA EE++L+ +Q + +L + E
Sbjct: 49 TDSIGYYLSTIGRVPLLTAAEEIELAHHVQAMKELLDVPE-------------------- 88
Query: 351 VDQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D+R R R+ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 89 -DERTPRQRHRIRMGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Query: 324 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------N 361
+L ++E L+ G P+ +WA +AG++ EL+ RR +
Sbjct: 110 QLMAVQERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQS 169
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ MI +N+RLV+S+AK YQ G
Sbjct: 170 EGNRAKEHMIKANLRLVVSVAKKYQNRG 197
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 162 WAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRG 206
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 27/117 (23%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + A Q A L L ++E L+ G P+ +WA AGV
Sbjct: 89 RYLRLRT-----VLAGAAKQGDAVATPYLHLIEVQERLASELGHRPSLERWANTAGVQVS 143
Query: 355 ELR-------RRL---------------NYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L+ RR + G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKEHMIKANLRLVVSVAKKYQNRG 200
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+D D + S LLTA EE++L+ I+ + RE L+ R SP Q
Sbjct: 107 IDTDDTIGLYLKEVSRVPLLTAEEEVELAQRIE---RGRMAREELA-RGNVSPKRRQ--- 159
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
ELRR + G ++ +IT+N RLVIS+AK Y G G
Sbjct: 160 -------ELRRLIEDGWAAREHLITANSRLVISVAKKYMGRG 194
>gi|148240837|ref|YP_001226224.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849376|emb|CAK24927.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 339
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + Y ++ LLTA EE++L+ +Q + +L + E G T Q
Sbjct: 49 TDSIGYYLSSIGRVPLLTAAEEIELAHHVQAMKELLDVPE-------GERTPRQ------ 95
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R R+ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 96 ------RHRIRMGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 21/103 (20%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G A+
Sbjct: 88 SDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------ERLG---------TAS 130
Query: 350 GVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+D R +L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 131 GLDTRLALDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 173
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR + LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIT-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G K ++I +N+RLV+S+AK Y G G
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRG 149
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA+EE M++ AG + +LE ++R T A+
Sbjct: 149 GDPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTEATERLEA-----ADRGEIELTRAE-- 201
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
QR L R G+ K +I++N+RL +SIAK Y G G +
Sbjct: 202 ------QRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGML 240
>gi|254432880|ref|ZP_05046583.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
gi|197627333|gb|EDY39892.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
Length = 331
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+ + A+ LLT EE++L +Q +++L P+++
Sbjct: 41 DPISWYLASIGREPLLTPAEEIELGNQVQAMMQL---------LEAAKPSYSDHE----- 86
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ L G K +M+ +N+RLV+S+AK YQG G
Sbjct: 87 -----KKLLRIGKRSKQRMMKANLRLVVSVAKKYQGKG 119
>gi|78779769|ref|YP_397881.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713268|gb|ABB50445.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 313
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKIKEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------KRIIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
D +R YLR LLT EE++L+ Q L E ++E +
Sbjct: 14 GDSIRMYLRDIGKVD-LLTPAEEVELAKKYQTGLAAEAALAQMNE------------GSV 60
Query: 350 GVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAG 389
VD+RE R+ L G KDK++ +N+RLV+SIAK Y+G G
Sbjct: 61 EVDRRECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRG 103
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E G P+ + ++ + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSIPIIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 109 AKERMVAANLRLVVSVAKKY 128
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 43/127 (33%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLR---------------------EVLSERCGGSPTFAQ 344
LL+ EE+ L+ IQ L+L LR + L+ + G P+
Sbjct: 42 LLSKEEEVVLAQKIQRYLQLLELRAQACQQLDPVMAEFARLITVHDHLAAQLGHRPSLKT 101
Query: 345 WAAAAGVDQRELRRRLNYGILC----------------------KDKMITSNIRLVISIA 382
WA ++ EL++ L G LC K+ ++ +N+RLV+SIA
Sbjct: 102 WAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQKAGIEAKNTLLAANLRLVVSIA 161
Query: 383 KNYQGAG 389
K YQ G
Sbjct: 162 KKYQNRG 168
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + + LLT EE++L +Q ++ VL+E + ++
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMM-------VLTEDGQLNEKTKEFTPQD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKVNEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|310287737|ref|YP_003938995.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
gi|309251673|gb|ADO53421.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
Length = 506
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 293
>gi|421733382|ref|ZP_16172488.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
gi|407078624|gb|EKE51424.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
Length = 506
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 293
>gi|311064624|ref|YP_003971349.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|421736043|ref|ZP_16174897.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
gi|310866943|gb|ADP36312.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|407296670|gb|EKF16198.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
Length = 506
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 293
>gi|116071837|ref|ZP_01469105.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065460|gb|EAU71218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 284
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 21/85 (24%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGL-REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LLTA EE++L+ +QD+ +L+ L +E L+ R + ++ G
Sbjct: 9 LLTAAEEIELAHHVQDMKQLKELPQEELTSRQ--------------------KHKIRMGK 48
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
+D+M+ +N+RLV+S+AK YQ G
Sbjct: 49 RARDRMMAANLRLVVSVAKKYQNQG 73
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLTA EEM+L+ I+ L +E ++ L E GG
Sbjct: 105 DPVRMYLRDIGRHP-LLTAEEEMELAEKIR--LGVEAEKK-LQELFGGRSE--DELTDEE 158
Query: 351 VDQR-ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+DQ+ EL ++ G + ++ SN+RLV+S+AK Y G G
Sbjct: 159 LDQKDELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRG 198
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E E G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 109 AKERMVAANLRLVVSVAKKY 128
>gi|313140538|ref|ZP_07802731.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
gi|313133048|gb|EFR50665.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
Length = 500
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 287
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL N+ + L+ I+ L R L ++ G P +WA + + EL R L
Sbjct: 265 LLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRNLLRAQR 324
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++ ++ +N+RLV+S+AK + G
Sbjct: 325 ARESLVAANLRLVVSVAKQFTNRG 348
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 183
Query: 347 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ + E+RR + G+ K +I++N+RLV+SIAK Y G G +
Sbjct: 184 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGML 231
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 186
Query: 347 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ + E+RR + G+ K +I++N+RLV+SIAK Y G G +
Sbjct: 187 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGML 234
>gi|302792318|ref|XP_002977925.1| hypothetical protein SELMODRAFT_53596 [Selaginella moellendorffii]
gi|300154628|gb|EFJ21263.1| hypothetical protein SELMODRAFT_53596 [Selaginella moellendorffii]
Length = 326
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
LT EE++L+ + +L+ +R E P+ +WA A + + LRR L G
Sbjct: 29 LTGPEEVRLAWFMAPAKRLQQVRLKFFEHLKREPSEEEWAKVAEMSVQTLRRLLQLGQAA 88
Query: 367 KDKMITSNIRLVISIAKNY 385
++KMI N+RLV A+ Y
Sbjct: 89 RNKMIKHNLRLVAHQARKY 107
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + ++ LLT EE++L +Q ++ T + A
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RE ++ + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKG 97
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+ITSN+RLV+SIAK Y G G
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRG 186
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+ITSN+RLV+SIAK Y G G
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRG 186
>gi|33866043|ref|NP_897602.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639018|emb|CAE08024.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 308
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ L +Q ++ V++E C GGS +++ +++ + RR
Sbjct: 16 QLLTPEQELMLGRKVQAMV-------VITEPCQLAGGSGPSCEYSD----EEKAVIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GERAKNQMITANLRLVVNLAKRYQGKG 89
>gi|33867026|ref|NP_898585.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639627|emb|CAE09011.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 328
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 21/100 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCGGSPTFAQWAAAA 349
+D + + ++ LLTA EE++L+ +Q++ +L+ L E L+ R
Sbjct: 38 TDSIGFYLSSIGRIPLLTAAEEIELAHHVQEMKQLQELPEEELTSRH------------- 84
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 85 -------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQG 117
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ L+ I++ E ++ L E P
Sbjct: 143 NDPVRQYLHEIGRVSLLTLEEEISLARRIEEG---EAAQKRLDEEGDSLPE--------- 190
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+QR L+R + G + + +I +N+RLV+SIAK Y G G
Sbjct: 191 REQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTGRG 229
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 27/140 (19%)
Query: 264 KAAANV----MSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSA 317
KA +V +S KS S RKR + + DP+R LLTA EE+ L+
Sbjct: 82 KATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 141
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVD-QRELRRRLN----YGILCKDKMI 371
I+ G + T + A G++ +R +RRL GI K ++I
Sbjct: 142 KIE---------------AGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLI 186
Query: 372 TSNIRLVISIAKNYQGAGRM 391
+N+RLV+SIAK Y G G +
Sbjct: 187 EANLRLVVSIAKRYVGRGML 206
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+ITSN+RLV+SIAK Y G G
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRG 186
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT ++ + L+ I+ L R L G P +WA A + EL R L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
++ ++ +N+RLV+S+AK + G
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRG 356
>gi|408500874|ref|YP_006864793.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
gi|408465698|gb|AFU71227.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
Length = 474
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + E
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGE--------------- 216
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 217 GMDFKRRRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 261
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+ITSN+RLV+SIAK Y G G
Sbjct: 134 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRG 171
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+ITSN+RLV+SIAK Y G G
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRG 178
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + AAA
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAAATR 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 180
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 284 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
V+ + DP+R YLR + LLTA EE+ L+ ++ G E SER
Sbjct: 96 DVESMGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQVE-----RG--EQASERL------ 141
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
Q A ++ +L R + G ++++I +N+RLV+SIAK Y G G
Sbjct: 142 -QKGDYAPSERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRG 187
>gi|126696812|ref|YP_001091698.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126543855|gb|ABO18097.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 313
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
+DP+ + LLT EE++L +Q ++ L +G L+E+ T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMILTEDG---QLNEKTNEFTT------- 66
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 67 ------QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
gi|21466014|pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 338
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 61
Query: 339 SPTFAQWAAAAGVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAG 389
+ + +EL+R L+ G + +I +N+RLV+SIAK Y G G
Sbjct: 62 TARVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRG 115
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G K ++I +N+RLV+S+AK Y G G
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRG 149
>gi|78214165|ref|YP_382944.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78198624|gb|ABB36389.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 328
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 23/112 (20%)
Query: 281 KRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCG 337
+RPS ++ +D + + ++ LLTA EE++L+ +Q + +L+ L E L+ R
Sbjct: 26 RRPSTRQGGRLATDSIGFYLSSIGRIPLLTAAEEIELAHHVQAMKQLQELPEEELTSRH- 84
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 85 -------------------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQG 117
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 340 PTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
PT A +WA A + EL + G+ K MI +N+RLV+S+AK YQ G
Sbjct: 142 PTLANGKRRWAEIANLTVEELEQVQTQGLQAKSHMIKANLRLVVSVAKKYQNRG 195
>gi|390937151|ref|YP_006394710.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
gi|389890764|gb|AFL04831.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
Length = 500
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 287
>gi|159903122|ref|YP_001550466.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159888298|gb|ABX08512.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 312
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR + G K++MITSN+RLV+++AK YQG G
Sbjct: 56 RRTIRQGERAKNQMITSNLRLVVNLAKRYQGKG 88
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLE-GLREVLSERCGGSPTFAQWAAAA 349
DP+R LLT +EE+ L+ + + E L+E+ +R G P A A
Sbjct: 170 DDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQREAGDPAAATKEEEA 229
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
L++ L+ G K K+ +N+RLV+SIAK Y G G +
Sbjct: 230 -----ALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGML 266
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 19/89 (21%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LLTA EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 159 LLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSP--------------QMRRDLNWIV 204
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ ++ +N+RLV+S+AK Y G G
Sbjct: 205 RDGERAKNHLLEANLRLVVSLAKRYTGRG 233
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAA 348
+D LR YLR RLLTA EE++L+ I+ L E L V P A+ A
Sbjct: 84 ADLLRQYLR-EIGRVRLLTAVEEVELARAIEAGLFAEEALDRV--------PPAAERRPA 134
Query: 349 AGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D+R +L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 135 ---DERLLGDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRG 175
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G K ++I +N+RLV+S+AK Y G G
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRG 149
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA + + EL++ L+ G +D+MI +N+RLV+++AK YQ G
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRG 159
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 285 VQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
V + DP+R YLR + LLTA EE+ L+ + ER +
Sbjct: 101 VDGIGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQV--------------ERGEQANERL 145
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
Q V++ +L R + G ++++I +N+RLV+SIAK Y G G
Sbjct: 146 QNGDYTPVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRG 191
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 145 DDPVRMYLKEIGKVNLLTPDEEIQLAQDMGAGDAAK-EQMEELEQARKNGEEVSLTEEEE 203
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
ELRR + G K ++ +N+RLV+SIAK Y G G +
Sbjct: 204 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGML 241
>gi|294786990|ref|ZP_06752244.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
gi|294485823|gb|EFG33457.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
Length = 403
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 100 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 150
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 151 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGML 189
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E P+ + A + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNY 385
K++M+ +N+RLV+S+AK Y
Sbjct: 98 AKERMVAANLRLVVSVAKKY 117
>gi|33240031|ref|NP_874973.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33237557|gb|AAP99625.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 310
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD---QRELRRRLNY 362
LLT EE+ + +Q ++ L ERC A G D RR +
Sbjct: 16 LLTPEEELTMGRKVQAMVGL-------IERC-------HRAGDQGADCVYTEAERRTIKI 61
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ MIT+N+RLV+++AK YQG G
Sbjct: 62 GEKAKNHMITANLRLVVNLAKKYQGKG 88
>gi|302810520|ref|XP_002986951.1| hypothetical protein SELMODRAFT_43614 [Selaginella moellendorffii]
gi|300145356|gb|EFJ12033.1| hypothetical protein SELMODRAFT_43614 [Selaginella moellendorffii]
Length = 326
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
LT EE++L+ + +L+ +R E P+ +WA A + + LRR L G
Sbjct: 29 LTGPEEVRLAWFMAPAKRLQQVRLKFFEHLKREPSEEEWAKVAEMSVQTLRRLLQSGQAA 88
Query: 367 KDKMITSNIRLVISIAKNY 385
++KMI N+RLV A+ Y
Sbjct: 89 RNKMIKHNLRLVAHQARKY 107
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 39/153 (25%)
Query: 259 TRAAEKAAANVMSVKSGSTSR----RKRPSVQEVDYS------DPLRYLRATTSSSRLLT 308
+ A+ A A + S K SR R R + +D S DP+R LLT
Sbjct: 97 VKVAKMADAEMASEKPKKKSRVRTARSRNRARGIDASTVMLTGDPVRMYLKEIGKVDLLT 156
Query: 309 ANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRR 358
A +E M++ AG++ KLE AA AG + R L R
Sbjct: 157 AADEVDLAMKIEAGLEASNKLE-------------------AADAGEIELTRAEMRRLTR 197
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+ K +I++N+RLV+SIAK Y G G +
Sbjct: 198 VEQVGLEAKQALISANLRLVVSIAKRYVGRGML 230
>gi|123966683|ref|YP_001011764.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201049|gb|ABM72657.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 313
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + + LLT EE++L +Q ++ L ++ + +P
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMTLTEDGQLNEKTKEFTP---------- 66
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +R + G K++M+ +N+RLV+S+AK YQG G
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKG 101
>gi|260436326|ref|ZP_05790296.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260414200|gb|EEX07496.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 308
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 23/112 (20%)
Query: 281 KRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCG 337
+RPS ++ +D + + ++ LLTA EE++L+ +Q + +L+ L E L+ R
Sbjct: 6 RRPSTRQGGRLATDSIGFYLSSIGRIPLLTAAEEIELAHHVQAMKQLQELPEEELTSRH- 64
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 65 -------------------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQG 97
>gi|354615745|ref|ZP_09033479.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353219904|gb|EHB84408.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 342
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-D 321
+K A + +T R RP+ +E D +RY ++ LLTANEE+ L+ I+
Sbjct: 11 QKEGAELADATLTATRGRGRPANEEPDI---VRYYLDEVGTTSLLTANEEVDLAKRIEAG 67
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
+ E LR + G T + +R+L+R G KD M+ +N+RLV++
Sbjct: 68 VYAAELLRRADAGETGPPETPER-------SRRDLQRVARDGARAKDHMVRANLRLVVTA 120
Query: 382 AK 383
A+
Sbjct: 121 AR 122
>gi|87303841|ref|ZP_01086550.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87281651|gb|EAQ73647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 215
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
RR L G K++M+ +N+RLV+S+AK YQG G
Sbjct: 22 RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKG 54
>gi|78780175|ref|YP_398287.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|123969439|ref|YP_001010297.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|126697226|ref|YP_001092112.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|78713674|gb|ABB50851.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
gi|123199549|gb|ABM71190.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
gi|126544269|gb|ABO18511.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 339
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLT EE++L+ +Q++ KL + E ++R
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TDRT-------------- 92
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QR L + + G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|33241312|ref|NP_876254.1| DNA-directed RNA polymerase sigma subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238842|gb|AAQ00907.1| DNA-directed RNA polymerase sigma subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 339
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + + ++ LLT EE++L+ +Q K++GL ++ E
Sbjct: 49 TDSIGFYLSSIGRVPLLTPAEEIELAHHVQ---KMKGLLDIPKE---------------N 90
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ R+ R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 91 INTRQ-RHQIRMGKRARDRMMAANLRLVVSVAKKYQNQG 128
>gi|212715646|ref|ZP_03323774.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661013|gb|EEB21588.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 448
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 147 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQM----DFKR----- 196
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 197 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGML 235
>gi|307700837|ref|ZP_07637862.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
gi|307613832|gb|EFN93076.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
Length = 614
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G+ K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGML 402
>gi|374849564|dbj|BAL52576.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 334
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RY R RLLT EE++ S + R G + A+ AG D
Sbjct: 47 RYFR-EVGGHRLLTHQEEIEYSRAV---------------RAGLA---AKKRIEAGEDTP 87
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
ELR + G+ ++K+I N+RLV+SIAK Y+
Sbjct: 88 ELRELVRKGMEAREKLIRHNLRLVVSIAKRYR 119
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 140 DDPVRMYLKEIGKVNLLTPDEEVQLAQDMGAGDAAK-EQMEELEQARKNGEEVSITEEEE 198
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
ELRR + G K ++ +N+RLV+SIAK Y G G +
Sbjct: 199 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGML 236
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 151 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 198
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K ++I +N+RLV+S+AK Y G G
Sbjct: 199 AKRRLIEANLRLVVSVAKRYVGRG 222
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 96 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG- 146
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G K ++I +N+RLV+S+AK Y G G
Sbjct: 147 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRG 181
>gi|422294144|gb|EKU21444.1| type ii alternative rna polymerase sigma sigma-70 family protein
[Nannochloropsis gaditana CCMP526]
Length = 323
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
TS+S L A ++++L+ ++ L + ++ G F++WA A GV++ LRR++
Sbjct: 25 TSTSIHLPAEQQLELARCVKSWLTCKAVKAEEESTLGRPIAFSEWARALGVEESALRRQI 84
Query: 361 NYGILCKDKMITSNIRLVISIA 382
G ++ ++ +NI LV S+A
Sbjct: 85 ADGKAARELLVKTNINLVKSMA 106
>gi|227875511|ref|ZP_03993651.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269977243|ref|ZP_06184216.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|306818820|ref|ZP_07452542.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
gi|227843847|gb|EEJ54016.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269934546|gb|EEZ91107.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|304648506|gb|EFM45809.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
Length = 614
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G+ K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGML 402
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKR-PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
+ A++ M +K KR +Q++D D + L+ +L EE S G
Sbjct: 234 KIADELKELYMKLKRKEKDLNKRIKRLQKID-PDVEKLLKGDYDDPEILKKIEENGFSFG 292
Query: 319 IQDLLKLEGLR-----EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
++L+ E L+ E L E G PT ++ + Q E R+ +N K K++ S
Sbjct: 293 RFEILRTETLKLQEEIEELKEMIGTVPT--EFDHVINIIQ-EGRKEVNE---TKQKIVQS 346
Query: 374 NIRLVISIAKNYQGAG 389
N+RLV+SIAK Y G
Sbjct: 347 NLRLVVSIAKKYTNRG 362
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P AA
Sbjct: 85 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAA 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 137 DLD-----RLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 171
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 283 PSVQEVDYSDP-----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
P+V V+ P +YLR LLTA EE++L+ ++ L E E+ G
Sbjct: 63 PAVARVESGGPSADLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLG 114
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+P A ++L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 115 TTPDLDSELA------QDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 160
>gi|119026029|ref|YP_909874.1| RNA polymerase sigma factor [Bifidobacterium adolescentis ATCC
15703]
gi|118765613|dbj|BAF39792.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
adolescentis ATCC 15703]
Length = 479
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 178 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 227
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 228 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGML 266
>gi|154488794|ref|ZP_02029643.1| hypothetical protein BIFADO_02101 [Bifidobacterium adolescentis
L2-32]
gi|154082931|gb|EDN81976.1| RNA polymerase sigma factor RpoD [Bifidobacterium adolescentis
L2-32]
Length = 478
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 177 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 226
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 227 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGML 265
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ G +P A
Sbjct: 131 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL- 181
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 182 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 216
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G K ++I +N+RLV+S+AK Y G G
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRG 149
>gi|283783165|ref|YP_003373919.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
gi|283441732|gb|ADB14198.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
Length = 489
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 276
>gi|224124068|ref|XP_002319237.1| predicted protein [Populus trichocarpa]
gi|222857613|gb|EEE95160.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S +L E ++LS I+ L LE + L ER G P+ Q A + + + +
Sbjct: 187 YVKGVVSDE-VLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPSDEQLADSLRISRAD 245
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L+ +L L ++K+ SN+RLV+SIA+ G
Sbjct: 246 LQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMG 279
>gi|91070600|gb|ABE11500.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[uncultured Prochlorococcus marinus clone HOT0M-8F9]
Length = 340
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD + Y ++ LLT EE++L+ +Q++ KL + E ++R
Sbjct: 50 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TDRT-------------- 93
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
QR L + + G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 94 --QRNLYQ-IKIGKKSRDRMMAANLRLVVSVAKKYQNQG 129
>gi|229817449|ref|ZP_04447731.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785238|gb|EEP21352.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 482
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + G + F +
Sbjct: 181 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDT----EGDTMDFKR----- 230
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 231 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 269
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 109 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 155
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K ++I SN+RLV+S+AK Y G G
Sbjct: 156 AKRRLIESNLRLVVSVAKRYVGRG 179
>gi|297243591|ref|ZP_06927522.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|415709860|ref|ZP_11463439.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
gi|296888342|gb|EFH27083.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|388055862|gb|EIK78747.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
Length = 489
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 276
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 180
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 197
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 180
>gi|299472548|emb|CBN77333.1| RNA polymerase sigma factor SigD [Ectocarpus siliculosus]
Length = 825
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 310 NEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-WAAAAGVDQRELRRRLNYGILCKD 368
++E +L IQ ++KL L++VL G ++ WA A LR+ L+ G K
Sbjct: 53 DKEYELGTKIQRMMKLLKLKDVLQPAAGEDEVSSEVWAEGAMESVESLRQALDEGEKAKQ 112
Query: 369 KMITSNIRLVISIAKNYQG 387
+++ N+ LV I KNY G
Sbjct: 113 ELVLDNLNLVDIIVKNYVG 131
>gi|298253932|ref|ZP_06977519.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
gi|297532075|gb|EFH71050.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
Length = 489
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 276
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 197
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 360
IQ + L + + L+ + G P +WA AGV +L+ L
Sbjct: 147 IQQYVHLIDIHDRLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGEL 206
Query: 361 ----NYGILCKDKMITSNIRLVISIAKNYQGAG 389
G+ K+ MI +N+RLV+S+AK YQ G
Sbjct: 207 DQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRG 239
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 349
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 134
Query: 350 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G G +
Sbjct: 135 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGML 181
>gi|148242708|ref|YP_001227865.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851018|emb|CAK28512.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 301
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R L G K++MIT+N+RLV+++AK YQG G
Sbjct: 50 KRALRLGERAKNQMITANLRLVVNLAKRYQGKG 82
>gi|449017553|dbj|BAM80955.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 591
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DY D +R + L+ EE+ L+ +Q L ++E R+ L + PT +WA
Sbjct: 271 FDYLDEIRRYQ-------LIEHEEEVALAREVQHLNRIEEKRQDLEKMLHRPPTSQEWAR 323
Query: 348 AAGVDQ-RELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
A + EL+ L G +++++TSN+RLV +I +
Sbjct: 324 ALNMKSAAELQEALARGHQARNRLVTSNLRLVNAIVNRF 362
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWA 346
+ +DP+R LL+A+EE++ + I+ L+ E ++++ +E + T
Sbjct: 92 IKINDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADT----- 146
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+R+L+ + G + K +++ +N+RLV+SIAK + G G +
Sbjct: 147 ------ERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGML 185
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++RR L G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGML 197
>gi|225351336|ref|ZP_03742359.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157680|gb|EEG70963.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 472
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQM----DFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 221 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGML 259
>gi|407642486|ref|YP_006806245.1| RNA polymerase principal sigma factor hrdA [Nocardia brasiliensis
ATCC 700358]
gi|407305370|gb|AFT99270.1| RNA polymerase principal sigma factor hrdA [Nocardia brasiliensis
ATCC 700358]
Length = 316
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 23/99 (23%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP++ YLR + LLTA +E++L+ AG+Q +L E+ AQ
Sbjct: 19 DPIKDYLRLIGRTP-LLTATQEVELATRIEAGVQAAQRLAEEDEL---------DVAQ-- 66
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+R L+RR+ G KD M+ +N+RLV+SIAK Y
Sbjct: 67 ------RRALQRRVAEGQRAKDHMVEANLRLVVSIAKRY 99
>gi|420236839|ref|ZP_14741316.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
gi|391879942|gb|EIT88442.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
Length = 624
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 321 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 371
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+R L+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 372 --KRGLKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGML 410
>gi|302867958|ref|YP_003836595.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|302570817|gb|ADL47019.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
Length = 314
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T + LLTA +E +L A I+ + + +R G + +Q
Sbjct: 19 YLR-TIGRTPLLTAEQETRLGARIEAGALAQRRLDDDGDRVGAA------------EQDR 65
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
LRR + G + MI +N+RLV+S+AK Y AGR+
Sbjct: 66 LRRLVADGRRARHHMIEANLRLVVSVAKRYALAGRL 101
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 21/107 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 349
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 79 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 123
Query: 350 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G G +
Sbjct: 124 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGML 170
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 22/72 (30%)
Query: 340 PTFAQWAAAAGVDQRELRRRLN--YGIL--------------------CKDKMITSNIRL 377
PT +WA AAG+ EL+ LN YG +D+MI +N+RL
Sbjct: 88 PTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARDRMIAANLRL 147
Query: 378 VISIAKNYQGAG 389
V+++AK YQ G
Sbjct: 148 VVTVAKKYQQRG 159
>gi|449518953|ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 515
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+L ++E +L +Q + L ++E L + G PT + A A ++ ++RR+L G
Sbjct: 217 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 276
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ + Y
Sbjct: 277 ARNKLIKHNLRLVLFVINKY 296
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P G+ R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GIHHRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRG 314
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 121 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 180
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ L+R ++ G K ++ +N+RLV+SIAK Y G G +
Sbjct: 181 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGML 222
>gi|78184480|ref|YP_376915.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78168774|gb|ABB25871.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 309
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ L +Q ++ ++E C GG+ ++ +QR + RR
Sbjct: 17 QLLTPEQELMLGRKVQAMV-------AITEPCLIAGGTGPSCEYND----NQRFVIRR-- 63
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 64 -GERAKNQMITANLRLVVNLAKRYQGKG 90
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 347 AAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAG 389
AA VD L +R+ G L K KM+ SN+RLV+SIAKNY+ G
Sbjct: 114 AAEEVD---LAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQG 154
>gi|449463472|ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 514
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+L ++E +L +Q + L ++E L + G PT + A A ++ ++RR+L G
Sbjct: 216 VLPSSEHTRLFKLVQPMKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRA 275
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ + Y
Sbjct: 276 ARNKLIKHNLRLVLFVINKY 295
>gi|415722105|ref|ZP_11468993.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
gi|388060269|gb|EIK82968.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
Length = 434
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 221
>gi|113954631|ref|YP_732094.1| RNA polymerase sigma factor [Synechococcus sp. CC9311]
gi|113881982|gb|ABI46940.1| RNA polymerase sigma factor [Synechococcus sp. CC9311]
Length = 340
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 19/84 (22%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ +Q + +L ++E ER +P + R R+ G
Sbjct: 65 LLTAAEEIELAHHVQAMKELLDIQE--EER---TP--------------KQRHRIRMGKR 105
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
+D+M+ +N+RLV+S+AK YQ G
Sbjct: 106 ARDRMMAANLRLVVSVAKKYQNQG 129
>gi|415723156|ref|ZP_11469330.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
gi|388063606|gb|EIK86175.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
Length = 429
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 26/108 (24%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 128 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 168
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 169 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 216
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 105 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 164
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ L+R ++ G K ++ +N+RLV+SIAK Y G G +
Sbjct: 165 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGML 206
>gi|302336705|ref|YP_003801911.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
smaragdinae DSM 11293]
gi|301633890|gb|ADK79317.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
smaragdinae DSM 11293]
Length = 322
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 287 EVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
+VD+ SDPL S+ LLT EE+ + IQ+ R+ +
Sbjct: 14 DVDFNDSDPLSLYLKQISAYPLLTKEEELMIGREIQE-------RKQELLELEELLGKEE 66
Query: 345 WAAAAGVDQRELRRRLNYGILCK--DKMITSNIRLVISIAKNYQGAG 389
+A + R+R +L K D+MITSN+RLV+SIAK YQ G
Sbjct: 67 IERSAYL----FRKRTIEAVLRKSRDRMITSNLRLVVSIAKKYQHRG 109
>gi|333997997|ref|YP_004530609.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
gi|333739459|gb|AEF84949.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
Length = 357
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 357 RRRLNYGILC-KDKMITSNIRLVISIAKNYQGAG 389
R RL+ +L K++MI SN+RLV+SIAKNYQ G
Sbjct: 111 RSRLDESLLLYKNRMINSNLRLVVSIAKNYQHRG 144
>gi|223994539|ref|XP_002286953.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220978268|gb|EED96594.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 298
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLRE-VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E +++ I+ + +R+ ++ R P+ AQWA+A + +L +N G
Sbjct: 1 LLTFEDEKEIAYNIKSFRSVLRVRDQLVGIRQLSEPSEAQWASACSLTVEQLNDIMNKGQ 60
Query: 365 LCKDKMITSNIRLVISIAKNY 385
+ K+IT N+ LV IAK Y
Sbjct: 61 ESRTKLITGNVGLVTLIAKRY 81
>gi|87124019|ref|ZP_01079869.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86168588|gb|EAQ69845.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 308
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 17/88 (19%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ +++RC GG ++ D++ + +R
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------AITDRCMLAGGEGPACDYSE----DEKRVIKR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAG 389
G K++MIT+N+RLV+++AK YQG G
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKG 89
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW-AAAA 349
+DP++ LL A +E++L+ I+ L E E LS+ G W A
Sbjct: 238 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ERLSKEFGEG-----WDKTKA 289
Query: 350 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
++R L R L + G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 290 SAEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGML 335
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 33 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 79
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K ++I SN+RLV+S+AK Y G G
Sbjct: 80 AKRRLIESNLRLVVSVAKRYVGRG 103
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCKDK 369
L+ + G P+ +WA+ AG+ EL+ RL G K+
Sbjct: 127 LTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKEH 186
Query: 370 MITSNIRLVISIAKNYQGAG 389
MI +N+RLV+S+AK YQ G
Sbjct: 187 MIKANLRLVVSVAKKYQNRG 206
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P + A
Sbjct: 86 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLTNTPDLSTRLAV- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G + K ++I SN+RLV+S+AK Y G G
Sbjct: 137 -----DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRG 171
>gi|374814085|ref|ZP_09717822.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-1]
Length = 352
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 255 KARRTRAAEKAAANVMSVKS-GSTSRRKRPSVQE-------VDYSDPLRYLRATTSSSRL 306
K + EK V + + G+ R + P +Q+ V SDPL S L
Sbjct: 7 KTGKIEKYEKKEGVVFHLTNEGNKKRMQNPGLQKMAKKSRPVKESDPLALYFKQISKFPL 66
Query: 307 LTANEEMQLSAGIQDLL-KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LT EE + I + K+ L ++ E+ + +++ LR
Sbjct: 67 LTVQEEQGIGEKIVTIRRKIHELEDIYDEKEKDD---VYRVERSNLEESLLRH------- 116
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ MI SN+RLV+SIAKNYQ G
Sbjct: 117 -KNHMINSNLRLVVSIAKNYQHRG 139
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 355 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAG 389
+L +R+ G L K KM+ SN+RLV+SIAKNY+ G
Sbjct: 119 DLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQG 154
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSP 340
P + ++ + DP+R LLTA +E++L+ ++ D+ + RE +
Sbjct: 84 PDLTDIAFDDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYT------- 136
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+G ++ EL R G + +I +N+RLV+SIAK Y G
Sbjct: 137 --------SGRERMELERAYALGCESRQHLIQANLRLVVSIAKKYTSYG 177
>gi|229820409|ref|YP_002881935.1| RNA polymerase sigma factor [Beutenbergia cavernae DSM 12333]
gi|229566322|gb|ACQ80173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Beutenbergia
cavernae DSM 12333]
Length = 499
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 21/105 (20%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E E L+ GGS F
Sbjct: 200 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ETLA--AGGSMEF-------- 246
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+LRR L + G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 247 ----KLRRELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGML 287
>gi|156975281|ref|YP_001446188.1| hypothetical protein VIBHAR_03010 [Vibrio harveyi ATCC BAA-1116]
gi|156526875|gb|ABU71961.1| hypothetical protein VIBHAR_03010 [Vibrio harveyi ATCC BAA-1116]
Length = 287
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAG 389
++A + D+RE RR G + +MI SN+RLV++IAK Y+G G
Sbjct: 25 IGKYALLSADDEREYARRAKMGDADARTRMINSNLRLVVNIAKRYKGRG 73
>gi|320103352|ref|YP_004178943.1| RNA polymerase sigma-38 subunit RpoS [Isosphaera pallida ATCC
43644]
gi|319750634|gb|ADV62394.1| RNA polymerase, sigma 38 subunit, RpoS [Isosphaera pallida ATCC
43644]
Length = 287
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 352 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
++REL RR++ G +D ++ +N+RLV+SIA+ Y G G
Sbjct: 33 EERELGRRVSEGDYFARDHLVKANLRLVVSIARGYNGKG 71
>gi|87123382|ref|ZP_01079233.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86169102|gb|EAQ70358.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 293
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + Y ++ LLTA EE++L+ +Q + +L L E +ER +P
Sbjct: 3 TDSIGYYLSSIGRVPLLTAAEEIELAHHVQAMKQLLELPE--AER---TP---------- 47
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 48 ----RQRHQIRMGKRARDRMMAANLRLVVSVAKKYQNQG 82
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 162 LLNAEEEVDLAKRIEAGLYGSERLRQVEEEGQKISP--------------QMRRDLNWIV 207
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ ++ +N+RLV+S+AK Y G G
Sbjct: 208 RDGERAKNHLLEANLRLVVSLAKRYTGRG 236
>gi|390564968|ref|ZP_10245695.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390171779|emb|CCF85025.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 329
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RY R RLLT EE++ S ++ L+ A+ +G D
Sbjct: 42 RYFR-DVGGHRLLTHGEEIEYSRAVRAGLE------------------ARKRVDSGEDSA 82
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
ELR L ++K+I N+RLV+SIAK Y+ +G
Sbjct: 83 ELRMILERAKAAREKLIRHNLRLVVSIAKKYRASG 117
>gi|403357522|gb|EJY78389.1| Voltage-gated ion channel superfamily [Oxytricha trifallax]
Length = 2648
Score = 40.0 bits (92), Expect = 2.2, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 164 NHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKS 223
N + S SK ++S + +T L E+E S I +I + EEE+ + +PL
Sbjct: 2169 NFNQSDNSVSKSSVSDISQLDTQSIENLIEQEMISKINSGLIQQPIAEEEFKDDEPLTNR 2228
Query: 224 ADLEPTHEELKLL----EEQVSQSIAVRSR-RQTE 253
D H + + EQ+S ++ ++SR RQ++
Sbjct: 2229 TDKITNHPDSSYIGSDVREQISYNMGLQSRARQSQ 2263
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R LLTA EE+ L+ I+ L E L E + A
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIEAGLFAAEKLSEA-----------RRVTVAL 141
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
VD + R G + K K++ +N+RLV+SIAK Y G G +
Sbjct: 142 RVDLEAVERD---GNVAKRKLVEANLRLVVSIAKRYVGRGML 180
>gi|50955189|ref|YP_062477.1| ECF subfamily RNA polymerase sigma-70 factor [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951671|gb|AAT89372.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 308
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R + + LLTA +E+ L+ I+ + L G E L+ R G SP
Sbjct: 13 NDPVRDYLNSIGRTWLLTAEDEVSLAKRIE-VGVLAG--ERLATRPGLSPR--------- 60
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++REL + G ++ I +N+RLV+SIAK Y G G
Sbjct: 61 -EKRELHVLSDDGKRAFERFIEANLRLVVSIAKRYAGRG 98
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 256 ARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
A+ T EK A + V + R+ R + +D +R LL A EE++
Sbjct: 150 AKETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 209
Query: 315 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 369
L+ I+ L E LR ++ G T AQ +R LN+ G K+
Sbjct: 210 LAKRIEAGLFATERLRRIME--SGEKITTAQ------------KRDLNWISRDGNRAKNH 255
Query: 370 MITSNIRLVISIAKNYQGAG 389
++ +N+RLV+S+AK Y G G
Sbjct: 256 LLEANLRLVVSLAKRYTGRG 275
>gi|374850850|dbj|BAL53828.1| RNA polymerase primary sigma factor RpoS [uncultured planctomycete]
Length = 278
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 352 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAG 389
+++EL RR+ G +D+MI +N+RLV++IA+NY G G
Sbjct: 33 EEKELARRIAQGDSEARDRMIRANLRLVVNIARNYTGKG 71
>gi|294790965|ref|ZP_06756123.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
gi|294458862|gb|EFG27215.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
Length = 588
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 336 KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 374
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R LLTA EE+ L+ +K+E E G A+ A
Sbjct: 117 GDPVRMYLKEIGKVPLLTAAEEIDLA------MKIEAGVE-----AGEQLEAAEADNAEE 165
Query: 351 VDQRELRR--RLN-YGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ +RE RR R+ G+ K ++I +N+RLV+SIAK Y G G +
Sbjct: 166 LSRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGML 209
>gi|94984583|ref|YP_603947.1| RNA polymerase subunit sigma 28 [Deinococcus geothermalis DSM
11300]
gi|94554864|gb|ABF44778.1| RNA polymerase, sigma 28 subunit [Deinococcus geothermalis DSM
11300]
Length = 532
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ L+ I++ E R++L E A
Sbjct: 229 NDPVRQYLHEIGRVPLLTLEEEIALARRIEEG---EEARKMLEE------------AGDE 273
Query: 351 VD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D +R L R++ G + +I +N+RLV+SIAK Y G G
Sbjct: 274 LDDRARRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRG 315
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
LRRR++ G ++ + T+N+RLV+S+AK Y G G
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRG 186
>gi|352095763|ref|ZP_08956777.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678905|gb|EHA62050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 353
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 19/84 (22%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ +Q + +L ++E +R +P + R R+ G
Sbjct: 78 LLTAAEEIELAHHVQAMKELLDIQE--EDR---TP--------------KQRHRIRMGKR 118
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
+D+M+ +N+RLV+S+AK YQ G
Sbjct: 119 ARDRMMAANLRLVVSVAKKYQNQG 142
>gi|383791048|ref|YP_005475622.1| sigma-70 family RNA polymerase sigma factor [Spirochaeta africana
DSM 8902]
gi|383107582|gb|AFG37915.1| RNA polymerase sigma factor, sigma-70 family [Spirochaeta africana
DSM 8902]
Length = 314
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE---RCGGSPTFAQWAA 347
SD L + +LLT +E+++ I +L + L V SE G + + Q ++
Sbjct: 12 SDSLSLYLKQIAKYKLLTVEQELEIGRRIVELR--DELERVTSEYQVHGGDAHDYMQRSS 69
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+RELR + K +MI +N+RLV+SIAK YQ G
Sbjct: 70 TV---ERELREQ-------KSRMINANLRLVVSIAKKYQHRG 101
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 286 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 336
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 337 AKNHLLEANLRLVVSLAKRYTGRG 360
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R+LRR + G K ++I +N+RLV+S+AK Y G G
Sbjct: 108 RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRG 143
>gi|159896899|ref|YP_001543146.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889938|gb|ABX03018.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 391
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 279 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
RRK+ E YLR LLTA EE+ L+ I+ K +E
Sbjct: 81 RRKKTLYSEAVEDSVQMYLR-EIGEVELLTAEEEITLAKQIETGRK--------AEHQLQ 131
Query: 339 SPTFAQWAAAAGVDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
+ +A W D+R L RR+++G + K+ +N+RLV+S+AK Y G
Sbjct: 132 TEQYATW------DERTALERRVDFGNEGRRKLTQANLRLVVSVAKKYIG 175
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 288 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 338
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 339 AKNHLLEANLRLVVSLAKRYTGRG 362
>gi|171742642|ref|ZP_02918449.1| hypothetical protein BIFDEN_01756 [Bifidobacterium dentium ATCC
27678]
gi|171278256|gb|EDT45917.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium ATCC
27678]
Length = 461
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQM----DFKR----- 209
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 248
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE+ L+ ++ L E E+ +P A+
Sbjct: 37 SDLFRQYLREIGRIP-LLTAEEEVDLARRVEAGLFAE-------EKLANTPDLDSRLAS- 87
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G + K K+I +N+RLV+S+AK Y G G
Sbjct: 88 -----DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRG 122
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL + EE+QL+ +Q +L L L++ AAA
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKK------------DNLAAAE-- 52
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++ + G K +MI +N+RLV+SIAK YQ G
Sbjct: 53 -----QKIIEQGQRAKQQMIQANLRLVVSIAKRYQRRG 85
>gi|333994312|ref|YP_004526925.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
gi|333735508|gb|AEF81457.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
Length = 333
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAG 389
N ++ K++MI SN+RLV+SIAKNYQ G
Sbjct: 92 NLVLVNKNRMINSNLRLVVSIAKNYQHRG 120
>gi|404493050|ref|YP_006717156.1| RNA polymerase sigma-38 factor, stationary phase [Pelobacter
carbinolicus DSM 2380]
gi|77545114|gb|ABA88676.1| RNA polymerase sigma-38 factor, stationary phase [Pelobacter
carbinolicus DSM 2380]
Length = 347
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 352 DQRELRRRLNYGILC-KDKMITSNIRLVISIAKNYQGAG 389
D+R L RR++ G + +D+MI SN+RLV+ IAK Y G
Sbjct: 86 DERMLARRISQGDMAARDRMIESNLRLVVKIAKRYMNRG 124
>gi|221636011|ref|YP_002523887.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
gi|221157983|gb|ACM07101.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
Length = 334
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RY R RLLT EE++ S + R G + A+ AG D
Sbjct: 47 RYFR-EVGGHRLLTHQEEIEYSRAV---------------RAGLA---ARKRIEAGEDTP 87
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
ELR + G ++K+I N+RLV+SIAK Y+
Sbjct: 88 ELRELVRKGQEAREKLIRHNLRLVVSIAKRYR 119
>gi|386346777|ref|YP_006045026.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
thermophila DSM 6578]
gi|339411744|gb|AEJ61309.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
thermophila DSM 6578]
Length = 338
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 287 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
E+ +D L SS LLT EE + IQ + KL LRE+ S +
Sbjct: 35 ELSDADALALYLKQISSYPLLTPEEEHWIGGEIQRI-KLR-LREL-------SSLPEEQR 85
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A ++R L +RL K++MIT+N+RLV+SIAK YQ G
Sbjct: 86 AHHFEEERRLDQRLRE---LKNRMITANLRLVVSIAKKYQHRG 125
>gi|338731696|ref|YP_004661088.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermotoga
thermarum DSM 5069]
gi|335366047|gb|AEH51992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
thermarum DSM 5069]
Length = 394
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K K+I SN+RLV+SIAK Y G G
Sbjct: 136 ERELARRAQMGDEKAKKKLIQSNLRLVVSIAKKYMGRG 173
>gi|307718699|ref|YP_003874231.1| RNA polymerase sigma factor RpoD [Spirochaeta thermophila DSM 6192]
gi|306532424|gb|ADN01958.1| RNA polymerase sigma factor RpoD [Spirochaeta thermophila DSM 6192]
Length = 338
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 287 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
E+ +D L SS LLT EE + IQ + KL LRE+ S +
Sbjct: 35 ELSDADALALYLKQISSYPLLTPEEEHWIGGEIQRI-KLR-LREL-------SSLPEEQR 85
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
A ++R L +RL K++MIT+N+RLV+SIAK YQ G
Sbjct: 86 AHHFEEERRLDQRLRE---LKNRMITANLRLVVSIAKKYQHRG 125
>gi|21466021|pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
gi|11527292|gb|AAG36964.1|AF291720_1 sigma factor SigA [Thermus aquaticus]
Length = 438
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 335
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 90 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 149
Query: 336 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 377
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 150 ILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 209
Query: 378 VISIAKNYQGAG 389
V+SIAK Y G G
Sbjct: 210 VVSIAKKYTGRG 221
>gi|308233952|ref|ZP_07664689.1| RNA polymerase, sigma 70 subunit, RpoD [Atopobium vaginae DSM
15829]
gi|328943964|ref|ZP_08241429.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
gi|327491933|gb|EGF23707.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
Length = 441
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 273 KSGSTSRRKRPSVQEVDYS------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLE 326
K S R R + +D S DP+R LL A+EE+ L+ IQ
Sbjct: 113 KKRSNKRSSRARTRRIDSSAVMLTGDPVRMYLKEIGKVDLLNASEEVHLAMKIQ------ 166
Query: 327 GLREVLSERCGGSPTFAQWAAAAG------VDQRELRRRLNYGILCKDKMITSNIRLVIS 380
G + AA G +QR L R G+ K + ++N+RL +S
Sbjct: 167 ---------AGTDASKKLEAAENGEIELTRAEQRRLMRIEQVGLDAKQALTSANLRLTVS 217
Query: 381 IAKNYQGAGRM 391
IAK Y G G +
Sbjct: 218 IAKRYVGRGML 228
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P + E+ + DP+R LLTA +E++L+ ++ + +R
Sbjct: 74 PDLGEIAFDDPVRMYLQEIGQVPLLTAEQEVELAKAME-------AGAIARQRLDRE--- 123
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++A+A ++ EL R + G + +I +N+RLV+SIAK Y G
Sbjct: 124 -EYASAR--ERFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYG 167
>gi|224116898|ref|XP_002331841.1| predicted protein [Populus trichocarpa]
gi|222875079|gb|EEF12210.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+ E L +Q + ++E L E G PT + A A +D ++R+++ G
Sbjct: 216 VLTSAEHAWLFKLMQPMKASLQVKEHLQENSGREPTEGELAEATDMDVLQVRKQIEVGRA 275
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ + Y
Sbjct: 276 ARNKLIKHNLRLVLFVINKY 295
>gi|159904372|ref|YP_001551716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889548|gb|ABX09762.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 338
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 25/102 (24%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ---DLLKLEGLREVLSERCGGSPTFAQWAA 347
+D + + ++ LLT EE++L+ +Q +LL +E +E LS R
Sbjct: 48 TDSIGFYLSSIGRVPLLTPAEEIELAHHVQKMKELLDIE--KEKLSARQ----------- 94
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 95 ---------RHQIRMGKRARDRMMAANLRLVVSVAKKYQNQG 127
>gi|309801431|ref|ZP_07695558.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
gi|308221946|gb|EFO78231.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
Length = 461
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQM----DFKR----- 209
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 248
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR V+ G + AQ RR LN+
Sbjct: 201 LLNAEEEVELAKRIEAGLFATERLRRVME--AGEKLSVAQ------------RRDLNWIS 246
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ ++ +N+RLV+S+AK Y G G
Sbjct: 247 RDGNRAKNHLLEANLRLVVSLAKRYTGRG 275
>gi|379736727|ref|YP_005330233.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
gi|378784534|emb|CCG04203.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
Length = 328
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 25/116 (21%)
Query: 280 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 339
R+ P + +D +R T + LLTA +E++L+ I+ L E L L+E+ G +
Sbjct: 18 RREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELAKRIEAGLYAERL---LAEQQGLT 74
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAG 389
P R+ +Y L D ++ +N+RLV+S+AK Y G G
Sbjct: 75 PA----------------RKRDYKTLATDGKAAKAHLLEANLRLVVSVAKRYTGHG 114
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L +E L + PT ++A + + EL ++L G
Sbjct: 37 LLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKLSESELLQQLQQGYQ 96
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K++MI +N+RLV+SIAK YQ
Sbjct: 97 AKEQMIRANLRLVVSIAKKYQ 117
>gi|148243603|ref|YP_001228760.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851913|emb|CAK29407.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 323
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 19/84 (22%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ +Q + +L SE T Q R+++ G
Sbjct: 48 LLTAAEEIELAHQVQQMKQL-------SEIPAEERTPKQ------------RQQVRMGCR 88
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
+D+M+ +N+RLV+S+AK YQ G
Sbjct: 89 ARDRMMAANLRLVVSVAKKYQNQG 112
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YL+ S LLTANEE++LS I+ + E ER + G +R
Sbjct: 53 YLQEIGRVS-LLTANEEVELSERIERGDEAE-------ERLATEDQLS------GTQRRN 98
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L + G + +I +N+RLV+SIAK Y G G
Sbjct: 99 LEHEVERGNDARRHLIQANLRLVVSIAKKYVGRG 132
>gi|386838431|ref|YP_006243489.1| RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374098732|gb|AEY87616.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451791723|gb|AGF61772.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 311
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 18/95 (18%)
Query: 295 RYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
RYL A +++ LLTA +E++L+ AG+ +LE R G + A
Sbjct: 13 RYL-AQIAATPLLTAEDEVRLARSIEAGVDAAAELE--------RAGDGES-----GPAP 58
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
+REL + G+ KD MI +N+RLV+SIAK +
Sbjct: 59 HRRRELEAAVREGLHAKDHMIRANLRLVVSIAKRH 93
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-------DLLKLEGLREVLSER 335
P + ++ DP+R LLTA EE+ L+ ++ LL+ +G+ E
Sbjct: 78 PDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQDDGMLE----- 132
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
D+ L+R ++ G + +I +N+RLV+SIAK Y G
Sbjct: 133 --------------HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYG 172
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R+ I+ K+K+I +N+RLV+SIAK Y G G
Sbjct: 182 KRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRG 214
>gi|23295779|gb|AAN12882.1| principal sigma factor RpoD [Bifidobacterium animalis subsp.
lactis]
Length = 508
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 28/109 (25%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 207 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 259
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+WAAA G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 260 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGML 295
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 254 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 313
+++ +T AA K+ V + R+ R + +D +R LL A EE+
Sbjct: 175 KESSKTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 234
Query: 314 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 368
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 235 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 280
Query: 369 KMITSNIRLVISIAKNYQGAG 389
++ +N+RLV+S+AK Y G G
Sbjct: 281 HLLEANLRLVVSLAKRYTGRG 301
>gi|284991968|ref|YP_003410522.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284065213|gb|ADB76151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 327
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S R+ P + +D +R T + LLTA +E++LS I+ L E L L+ER
Sbjct: 16 SSRREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELSKRIEAGLYAERL---LTERQL 72
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+P + A D G K ++ +N+RLV+S+AK Y G G
Sbjct: 73 -TPALQRDYKALAAD----------GKAAKRHLLEANLRLVVSVAKRYTGHG 113
>gi|386856302|ref|YP_006260479.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
gi|379999831|gb|AFD25021.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
Length = 390
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ L+ I++ E R++L E
Sbjct: 88 NDPVRQYLHEIGRVSLLTLEEEIALARRIEEG---EEARKILEEDLDLDDR--------- 135
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R L R++ G + +I +N+RLV+SIAK Y G G
Sbjct: 136 -GRRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRG 173
>gi|157364824|ref|YP_001471591.1| RpoD family RNA polymerase sigma factor [Thermotoga lettingae TMO]
gi|157315428|gb|ABV34527.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga lettingae
TMO]
Length = 400
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K+K+I SN+RLV+SIAK Y G G
Sbjct: 143 ERELARRAQIGNKRAKEKLIESNLRLVVSIAKRYIGRG 180
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 261 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 145 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 204
Query: 320 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 374
+ L E LR ++ G T AQ +R LN+ G K+ ++ +N
Sbjct: 205 EAGLFATERLRRMVD--AGEKITTAQ------------KRDLNWISRDGNRAKNHLLEAN 250
Query: 375 IRLVISIAKNYQGAG 389
+RLV+S+AK Y G G
Sbjct: 251 LRLVVSLAKRYTGRG 265
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA+EE M++ AG + KLE A
Sbjct: 157 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASQKLE-------------------A 197
Query: 347 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
A G + R L R G+ K +I++N+RL +SIAK Y G G +
Sbjct: 198 ADNGEIELTRAEMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGML 248
>gi|306822519|ref|ZP_07455897.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
gi|304554064|gb|EFM41973.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
Length = 472
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQM----DFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ N G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 221 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGML 259
>gi|384191381|ref|YP_005577129.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192526|ref|YP_005578273.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289178873|gb|ADC86119.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|340365263|gb|AEK30554.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 522
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 28/109 (25%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 221 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 273
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+WAAA G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 274 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGML 309
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A E++LS I+ L E L E ER GV + EL R + G
Sbjct: 51 LLDAEREVELSRTIEAGLYAEHLLEQGEER-------------RGVSREELERLVTEGQR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
KD I +N+RLV+SIA+ Y +G
Sbjct: 98 AKDLFIRANLRLVVSIARRYVRSG 121
>gi|296454312|ref|YP_003661455.1| RpoD family RNA polymerase sigma-70 factor [Bifidobacterium longum
subsp. longum JDM301]
gi|296183743|gb|ADH00625.1| RNA polymerase, sigma 70 subunit, RpoD family [Bifidobacterium
longum subsp. longum JDM301]
Length = 474
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 222
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 223 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 261
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 139 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 198
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 372
I+ L E LR +++ G + AQ +R LN+ G K+ ++
Sbjct: 199 RIEAGLFATERLRRMMA--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 244
Query: 373 SNIRLVISIAKNYQGAG 389
+N+RLV+S+AK Y G G
Sbjct: 245 ANLRLVVSLAKRYTGRG 261
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +G
Sbjct: 79 AGVEKAELQRLVAEGARAKDLFIRANLRLVVSIARRYVRSG 119
>gi|239621277|ref|ZP_04664308.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239515738|gb|EEQ55605.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 488
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 236
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 237 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 275
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 134 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 193
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 372
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 194 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 239
Query: 373 SNIRLVISIAKNYQGAG 389
+N+RLV+S+AK Y G G
Sbjct: 240 ANLRLVVSLAKRYTGRG 256
>gi|289746504|ref|ZP_06505882.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
02_1987]
gi|424805041|ref|ZP_18230472.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor, partial
[Mycobacterium tuberculosis W-148]
gi|289687032|gb|EFD54520.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
02_1987]
gi|326904317|gb|EGE51250.1| LOW QUALITY PROTEIN: RNA polymerase sigma factor [Mycobacterium
tuberculosis W-148]
Length = 316
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRG 316
>gi|339479381|gb|ABE95849.1| RNA polymerase principal sigma factor hrdB [Bifidobacterium breve
UCC2003]
Length = 472
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 259
>gi|227547666|ref|ZP_03977715.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227211921|gb|EEI79817.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 464
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 163 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 212
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 213 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 251
>gi|23465986|ref|NP_696589.1| RNA polymerase sigma factor [Bifidobacterium longum NCC2705]
gi|46191322|ref|ZP_00206768.1| COG0568: DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Bifidobacterium longum DJO10A]
gi|189439160|ref|YP_001954241.1| RNA polymerase sigma factor [Bifidobacterium longum DJO10A]
gi|312132592|ref|YP_003999931.1| rpod [Bifidobacterium longum subsp. longum BBMN68]
gi|317482450|ref|ZP_07941467.1| RNA polymerase sigma factor RpoD [Bifidobacterium sp. 12_1_47BFAA]
gi|322689398|ref|YP_004209132.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis 157F]
gi|322691364|ref|YP_004220934.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum JCM 1217]
gi|384201340|ref|YP_005587087.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum KACC 91563]
gi|419846679|ref|ZP_14369907.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 1-6B]
gi|419850914|ref|ZP_14373876.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 35B]
gi|419853859|ref|ZP_14376659.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 2-2B]
gi|419855743|ref|ZP_14378493.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 44B]
gi|23326702|gb|AAN25225.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
longum NCC2705]
gi|189427595|gb|ACD97743.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium longum
DJO10A]
gi|311773536|gb|ADQ03024.1| RpoD [Bifidobacterium longum subsp. longum BBMN68]
gi|316916110|gb|EFV37515.1| RNA polymerase sigma factor RpoD [Bifidobacterium sp. 12_1_47BFAA]
gi|320456220|dbj|BAJ66842.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320460734|dbj|BAJ71354.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis 157F]
gi|338754347|gb|AEI97336.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum KACC 91563]
gi|386406433|gb|EIJ21440.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 2-2B]
gi|386407605|gb|EIJ22573.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 35B]
gi|386413459|gb|EIJ28065.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 1-6B]
gi|386414966|gb|EIJ29507.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 44B]
Length = 474
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 222
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 223 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 261
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+EL++ LN I K +M+ +N+RLVISIAK Y G
Sbjct: 369 QELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRG 404
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 33/169 (19%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 282
S ++EP E + L++ +Q I + + + + K + A E+ N +SV G
Sbjct: 42 SFEMEPEQFE-EFLDQIEAQGIEMDRKEEADAK---SDAEEQFDLNDLSVPPG------- 90
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
V +DP+R LLT EE+ L+ IQ+ ++ E L+E +P
Sbjct: 91 -----VRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEA---ELAETNEMTPK- 141
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+D +R G K K+ +N+RLV+SIAK Y G G +
Sbjct: 142 --------IDAAIIR-----GENAKKKLAEANLRLVVSIAKRYVGRGML 177
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S RLLTA +E++L+ I+ L E L L+E P + +RE
Sbjct: 40 YLR-LISRVRLLTAEQEVELAKRIEAGLYAERL---LAEEPVLEPRY----------RRE 85
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
L G K+ + +N+RLV+S+AK Y G G
Sbjct: 86 LGLLAEDGRRAKNHLTEANLRLVVSVAKRYTGRG 119
>gi|213691851|ref|YP_002322437.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|384198994|ref|YP_005584737.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213523312|gb|ACJ52059.1| RNA polymerase, sigma 70 subunit, RpoD family [Bifidobacterium
longum subsp. infantis ATCC 15697 = JCM 1222]
gi|320457946|dbj|BAJ68567.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 464
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 163 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 212
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 213 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 251
>gi|386867263|ref|YP_006280257.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701346|gb|AFI63294.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 488
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 28/109 (25%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+WAAA G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGML 275
>gi|183601374|ref|ZP_02962744.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683429|ref|YP_002469812.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191127|ref|YP_002968521.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196533|ref|YP_002970088.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194120|ref|YP_005579866.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195685|ref|YP_005581430.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|387820993|ref|YP_006301036.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|387822671|ref|YP_006302620.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679653|ref|ZP_17654529.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|183218980|gb|EDT89621.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621079|gb|ACL29236.1| principal sigma factor RpoD [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249519|gb|ACS46459.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251087|gb|ACS48026.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794116|gb|ADG33651.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|345282979|gb|AEN76833.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041297|gb|EHN17801.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|386653694|gb|AFJ16824.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|386655279|gb|AFJ18408.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 488
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 28/109 (25%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+WAAA G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGML 275
>gi|257068601|ref|YP_003154856.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
gi|256559419|gb|ACU85266.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
Length = 433
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E ++ G +F
Sbjct: 128 ADPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDDSFRDKNGRLT 180
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 181 KAGRELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGML 221
>gi|33864510|ref|NP_896070.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33641290|emb|CAE22420.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 344
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+++N+RLV+S+AK YQ G
Sbjct: 101 RHKIRMGKRARDRMMSANLRLVVSVAKKYQNQG 133
>gi|384196835|ref|YP_005582579.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110812|gb|AEF27828.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 472
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 259
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 254 RKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 312
R A TR++++ +A+ V + R+ R + +D +R LL A EE
Sbjct: 128 RVAPTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 187
Query: 313 MQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
++L+ I+ L E +R++ SP +R+LR + G K+ ++
Sbjct: 188 VELAKRIEAGLYGAERIRKLFESNDKLSPQM----------RRDLRWIVRDGERAKNHLL 237
Query: 372 TSNIRLVISIAKNYQGAG 389
+N+RLV+S+AK Y G G
Sbjct: 238 EANLRLVVSLAKRYTGRG 255
>gi|289751356|ref|ZP_06510734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
gi|289691943|gb|EFD59372.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
Length = 470
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA---------AQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRG 314
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
AA K+ V + R+ R + +D +R LL A EE++L+ I+
Sbjct: 187 AAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 246
Query: 321 -DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNI 375
L E LR ++ G + AQ +R LN+ G K+ ++ +N+
Sbjct: 247 AGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWISRDGNRAKNHLLEANL 292
Query: 376 RLVISIAKNYQGAG 389
RLV+S+AK Y G G
Sbjct: 293 RLVVSLAKRYTGRG 306
>gi|357403480|ref|YP_004915404.1| sigma D (sigma 70) factor of RNA polymerase [Methylomicrobium
alcaliphilum 20Z]
gi|351716145|emb|CCE21796.1| sigma D (sigma 70) factor of RNA polymerase [Methylomicrobium
alcaliphilum 20Z]
Length = 603
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 28/110 (25%)
Query: 287 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
E DY ++YLR+T ++++ NE+ E A A
Sbjct: 299 ETDYEWLVQYLRSTGIDNQVIAENEQ---------------------EVKKAQSVLADIA 337
Query: 347 AAAGV---DQRELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAG 389
+ G+ D +++ RR++ G K +MI +N+RLVISIAK Y G
Sbjct: 338 STYGLSVSDIKDINRRMSIGEAKVRRAKKEMIEANLRLVISIAKKYTNRG 387
>gi|218295160|ref|ZP_03495996.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
gi|218244363|gb|EED10888.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
Length = 439
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 30/132 (22%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 335
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 91 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 150
Query: 336 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 377
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 151 ILGTARIQKIPGLKEKLDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 210
Query: 378 VISIAKNYQGAG 389
V+SIAK Y G G
Sbjct: 211 VVSIAKKYTGRG 222
>gi|291457726|ref|ZP_06597116.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|417942051|ref|ZP_12585328.1| RNA polymerase sigma factor [Bifidobacterium breve CECT 7263]
gi|291380779|gb|EFE88297.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|376167436|gb|EHS86272.1| RNA polymerase sigma factor [Bifidobacterium breve CECT 7263]
Length = 472
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
+REL+ G KD ++ +N+RLV+S+AK Y G G +
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGML 259
>gi|386846220|ref|YP_006264233.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359833724|gb|AEV82165.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 333
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A E++LS I+ L E L E ER G+ + EL R + G
Sbjct: 51 LLDAAREVELSKAIEAGLYAEHLLEQGEER-------------RGISREELERLVTEGSR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
KD I +N+RLV+SIA+ Y +G
Sbjct: 98 AKDLFIRANLRLVVSIARRYVRSG 121
>gi|269956779|ref|YP_003326568.1| RpoD subfamily RNA polymerase sigma-70 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269305460|gb|ACZ31010.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Xylanimonas
cellulosilytica DSM 15894]
Length = 549
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA-AAA 349
+DP++ LL A +E++L+ I+ L E E LS+ FA + A
Sbjct: 241 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---EKLSK------DFADFDRTKA 291
Query: 350 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
D R L R L + G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 292 DADTRRLVRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGML 337
>gi|374854339|dbj|BAL57223.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
gi|374855178|dbj|BAL58041.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
Length = 405
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+D D + S LLTA EE++L+ I+ + RE L+ R SP
Sbjct: 103 IDTDDTIGLYLKEVSRIPLLTAEEEVELAQRIE---RGRMAREELA-RGNVSPK------ 152
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ ELR+ + G ++ +IT+N RLVIS+AK Y G G
Sbjct: 153 ----RRAELRKLIEDGWAAREHLITANSRLVISVAKKYMGRG 190
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R+LR + G L K+ ++ +N+RLV+S+AK Y G G
Sbjct: 130 RRDLRAVVRDGALAKNHLLEANLRLVVSLAKRYTGRG 166
>gi|115465727|ref|NP_001056463.1| Os05g0586600 [Oryza sativa Japonica Group]
gi|30698488|dbj|BAC76601.1| Sig5 [Oryza sativa Japonica Group]
gi|30698518|dbj|BAC76607.1| plastid sigma factor SIG5 [Oryza sativa Japonica Group]
gi|113580014|dbj|BAF18377.1| Os05g0586600 [Oryza sativa Japonica Group]
Length = 500
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+ + ++L +Q + + ++E L P AQ A A + ++RR L G
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ Y
Sbjct: 263 ARNKLIKHNLRLVLYTINKY 282
>gi|22298042|ref|NP_681289.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
gi|22294220|dbj|BAC08051.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 375
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
WA AA + EL+ G K++++ +N+RLV++IAK YQ G
Sbjct: 115 WAKAANITLSELQHIERQGQRAKNQLLQANLRLVVNIAKKYQHHG 159
>gi|289444245|ref|ZP_06433989.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
gi|289417164|gb|EFD14404.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
Length = 375
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA---------AQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRG 314
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL A EE++L+ I+ L E LR + SP +R+LR + G
Sbjct: 173 LLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL----------RRDLRWIVRDGE 222
Query: 365 LCKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 223 RAKNHLLEANLRLVVSLAKRYTGRG 247
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 247 RSRRQTERKARRTRAAEKAAAN--VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
R RRQ E A AE A+ V + R+ R + +D +R
Sbjct: 125 RRRRQPEEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKV 184
Query: 305 RLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
LL A EE++L+ I+ L +E +RE S G AQ RR + +
Sbjct: 185 ALLNAEEEVELAKRIEAGLFAVEKMRE--SAEKGEKLPVAQ------------RRDMTW- 229
Query: 364 ILCKDK------MITSNIRLVISIAKNYQGAG 389
+C+D ++ +N+RLV+S+AK Y G G
Sbjct: 230 -ICRDGNRAKNHLLEANLRLVVSLAKRYTGRG 260
>gi|419759946|ref|ZP_14286231.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
gi|407514985|gb|EKF49771.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
Length = 371
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 353 QRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAG 389
+REL RR G K K++ SN+RLV+SIAK Y G G
Sbjct: 115 ERELARRAQLGDERAKQKLVESNLRLVVSIAKRYVGKG 152
>gi|226356403|ref|YP_002786143.1| sigma-70 family RNA polymerase sigma factor [Deinococcus deserti
VCD115]
gi|226318393|gb|ACO46389.1| putative RNA polymerase sigma factor, sigma-70 family [Deinococcus
deserti VCD115]
Length = 547
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ L+ I++ E R++L E
Sbjct: 245 NDPVRQYLHEIGRVSLLTLEEEIALARRIEEG---EEARKLLEEDV----------ELDD 291
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R L R++ G + +I +N+RLV+SIAK Y G G
Sbjct: 292 RGRRRLMRQMEDGANARQGLIEANLRLVVSIAKKYTGRG 330
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLT +EE M++ AG+ +LE +E G +
Sbjct: 90 GDPVRMYLKEIGKVPLLTPSEEVDLAMKIEAGVAATAELEK-----AEEEGVELDRRERR 144
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
V+Q G+ KD++I +N+RLV+SIAK Y G G +
Sbjct: 145 RLTRVEQ--------VGLDAKDQLIEANLRLVVSIAKRYVGRGML 181
>gi|315655467|ref|ZP_07908366.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
gi|315490122|gb|EFU79748.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
Length = 553
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 253 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 303
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G + K+ ++ +N+RLV+++AK Y G G +
Sbjct: 304 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGML 341
>gi|428780485|ref|YP_007172271.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694764|gb|AFZ50914.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 328
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L +E L + T +W + EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMGLIEQKEELEKELEREVTEEEWVEKTELTSAELQKAIKDGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQ 386
K KMI +N+RLV++IAK YQ
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQ 112
>gi|289754805|ref|ZP_06514183.1| predicted protein [Mycobacterium tuberculosis EAS054]
gi|289695392|gb|EFD62821.1| predicted protein [Mycobacterium tuberculosis EAS054]
Length = 473
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA---------AQRRDMMWICRDGDR 292
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRG 316
>gi|15807631|ref|NP_294640.1| RNA polymerase sigma-A factor [Deinococcus radiodurans R1]
Length = 360
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 21/103 (20%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YL S LLT EE+ L+ I++ G Q
Sbjct: 58 NDPVRQYLHEIGRVS-LLTLEEEIALARRIEE----------------GEEARKQLEEDE 100
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+D +R L R++ G + +I +N+RLV+SIAK Y G G
Sbjct: 101 SLDDRSRRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRG 143
>gi|375100080|ref|ZP_09746343.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374660812|gb|EHR60690.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 330
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR--EVLSER 335
SRR RP+ E D +RY ++ LLTAN+E+ L+ I+ G+ E+L
Sbjct: 18 SRRGRPANDEPDI---VRYYLDEVGATPLLTANQEVDLAKRIE-----AGVYAAELLRRA 69
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 383
T D+REL G KD M+ +N+RLV++ A+
Sbjct: 70 DADETTLDH-------DRRELEAIARDGQRAKDHMVKANLRLVVTAAR 110
>gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289714395|gb|EFD78407.1| predicted protein [Mycobacterium tuberculosis T85]
Length = 330
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRG 316
>gi|304389369|ref|ZP_07371334.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327487|gb|EFL94720.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 564
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 264 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 314
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G + K+ ++ +N+RLV+++AK Y G G +
Sbjct: 315 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGML 352
>gi|222632729|gb|EEE64861.1| hypothetical protein OsJ_19718 [Oryza sativa Japonica Group]
Length = 457
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+ + ++L +Q + + ++E L P AQ A A + ++RR L G
Sbjct: 160 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 219
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ Y
Sbjct: 220 ARNKLIKHNLRLVLYTINKY 239
>gi|125553511|gb|EAY99220.1| hypothetical protein OsI_21178 [Oryza sativa Indica Group]
Length = 500
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+ + ++L +Q + + ++E L P AQ A A + ++RR L G
Sbjct: 203 VLTSAQSIRLFRIMQPMKAILEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 366 CKDKMITSNIRLVISIAKNY 385
++K+I N+RLV+ Y
Sbjct: 263 ARNKLIKHNLRLVLYTINKY 282
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE+ L+ I+ L E LR+ E SP ++RR LN+
Sbjct: 141 LLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSP--------------QMRRDLNWIV 186
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAG 389
G K+ ++ +N+RLV+S+AK Y G G
Sbjct: 187 RDGERAKNHLLEANLRLVVSLAKRYTGRG 215
>gi|427703656|ref|YP_007046878.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427346824|gb|AFY29537.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 341
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D + + +T LLT EE++L+ +Q L+ L E G T Q
Sbjct: 51 ADSIGWYLSTIGRVPLLTPAEEIELAHHVQAGKTLQSLVE-------GELTARQ------ 97
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+R+L +D+M+ +N+RLV+S+AK YQ G
Sbjct: 98 ------KRQLRMAQRARDRMMAANLRLVVSVAKKYQNQG 130
>gi|116074244|ref|ZP_01471506.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069549|gb|EAU75301.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
R ++ G +D+M+ +N+RLV+S+AK YQ G
Sbjct: 98 RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQG 130
>gi|302551232|ref|ZP_07303574.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302468850|gb|EFL31943.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 438
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P A
Sbjct: 139 SDLFRQYLREIGRVP-LLTAAEEVELARRVEAGLFAE-------EKLRLAPDLDSQLAV- 189
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+L R + G + K ++I +N+RLV+S+AK Y G G
Sbjct: 190 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRG 224
>gi|443293686|ref|ZP_21032780.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
gi|385883544|emb|CCH20931.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
Length = 316
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A +E+ LS I+ L E L + A GVD+ +L R + G
Sbjct: 34 LLDAAKEVDLSKAIEAGLYAEHL-------------LGEDAVPDGVDRADLERLVVEGER 80
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
KD I +N+RLV+SIA+ Y +G
Sbjct: 81 AKDLFIRANLRLVVSIARRYVRSG 104
>gi|358456365|ref|ZP_09166589.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357080541|gb|EHI89976.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 413
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 24/119 (20%)
Query: 279 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
RR P V DP+R + + LLTA E+ L+ I+ GL
Sbjct: 101 RRVAPREAPVTAHDPVRLYLTSIGKTPLLTAAGEVDLAKRIE-----AGL---------- 145
Query: 339 SPTFAQWAAAAGVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGRM 391
FA + A D R+RL+ G +++ +N+RLV+SIA+ Y G G +
Sbjct: 146 ---FAGYKLANDADDMSPRQRLDLEAIELDGQRANRQLVEANLRLVVSIARRYAGRGML 201
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 22/104 (21%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQW 345
+DP++ YL+ S LL A +E+ L+ AG+ KL+ + ++ +
Sbjct: 319 ADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEYKLKNEADSMTAK---------- 367
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
++REL + G L K+ ++ +N+RLV+S+AK Y G G
Sbjct: 368 ------ERRELHFMASDGQLAKNHLLEANLRLVVSLAKRYTGRG 405
>gi|289575401|ref|ZP_06455628.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85]
gi|289539832|gb|EFD44410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis K85]
Length = 470
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA---------AQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAG 389
K+ ++ +N+RLV+S+AK Y G G
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRG 314
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +G
Sbjct: 77 AGVERAELQRLVAEGERAKDLFIRANLRLVVSIARRYVRSG 117
>gi|336320563|ref|YP_004600531.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
gi|336104144|gb|AEI11963.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
Length = 541
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E ER G T
Sbjct: 242 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ERLGSGATM-------- 286
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGRM 391
+ ++RR L + G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 287 --EPKIRRELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGML 329
>gi|315656627|ref|ZP_07909514.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492582|gb|EFU82186.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 564
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 264 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 314
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G + K+ ++ +N+RLV+++AK Y G G +
Sbjct: 315 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGML 352
>gi|300741779|ref|ZP_07071800.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
gi|300380964|gb|EFJ77526.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
Length = 468
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ L+ I+ L E L++ P
Sbjct: 169 ADPVKDYLKQIGKVS-LLNAQQEVDLAMRIEAGLYAE---HKLADNPDMDPKL------- 217
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
++ELR ++ G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 218 ---KKELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGML 256
>gi|311111671|ref|YP_003982893.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
gi|310943165|gb|ADP39459.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
Length = 468
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ L+ I+ L E L++ P
Sbjct: 169 ADPVKDYLKQIGKVS-LLNAQQEVDLAMRIEAGLYAE---HKLADNPDMDPKL------- 217
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
++ELR ++ G K+ ++ +N+RLV+S+AK Y G G +
Sbjct: 218 ---KKELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGML 256
>gi|298346920|ref|YP_003719607.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
gi|298236981|gb|ADI68113.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
Length = 563
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 263 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 313
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGRM 391
REL + G + K+ ++ +N+RLV+++AK Y G G +
Sbjct: 314 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGML 351
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.123 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,308,174,140
Number of Sequences: 23463169
Number of extensions: 194432054
Number of successful extensions: 723624
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 1502
Number of HSP's that attempted gapping in prelim test: 719749
Number of HSP's gapped (non-prelim): 4302
length of query: 395
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 251
effective length of database: 8,980,499,031
effective search space: 2254105256781
effective search space used: 2254105256781
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)