BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016078
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 8 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 67
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 68 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 127
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 128 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 187
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 188 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 246
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 247 KNSKYHGVSLLNPPETL 263
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 153/259 (59%), Gaps = 2/259 (0%)
Query: 136 LAVVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETL 194
+ V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL
Sbjct: 1 MEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 60
Query: 195 YLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVL 254
+L V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 61 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 120
Query: 255 AAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCP 314
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y P
Sbjct: 121 RMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP 180
Query: 315 SMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYK 374
S+IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +
Sbjct: 181 SVIAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIRE 239
Query: 375 KFSSLDCGAVSLLKPAKSL 393
K+ + VSLL P ++L
Sbjct: 240 KYKNSKYHGVSLLNPPETL 258
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 4 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 123
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 124 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 183
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 184 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 242
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 243 KNSKYHGVSLLNPPETL 259
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 239
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 240 KNSKYHGVSLLNPPETL 256
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 2 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 61
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 62 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 121
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 122 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 181
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 182 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 240
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 241 KNSKYHGVSLLNPPETL 257
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 63 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 183 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 242 KNSKYHGVSLLNPPETL 258
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 4 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 63
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 64 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 123
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 124 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 183
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 184 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 242
Query: 377 SSLDCGAVSLLKPAKSL 393
+VSLL P ++L
Sbjct: 243 KHSKYHSVSLLNPPETL 259
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 120
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 121 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 180
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 239
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 240 KNSKYHGVSLLNPPETL 256
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 239
Query: 377 SSLDCGAVSLLKPAKSL 393
+VSLL P ++L
Sbjct: 240 KHSKYHSVSLLNPPETL 256
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 60
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 61 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRM 120
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 121 EHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYLKYLPSL 180
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IA +A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+
Sbjct: 181 IAGAAFHLALYTVTGQS-WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 239
Query: 377 SSLDCGAVSLLKPAKSL 393
+VSLL P ++L
Sbjct: 240 KHSKYHSVSLLNPPETL 256
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 151/255 (59%), Gaps = 2/255 (0%)
Query: 140 EYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTV 198
+Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L V
Sbjct: 1 DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 199 HIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEK 258
+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL E
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 259 AILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIA 318
+L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+IA
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIA 180
Query: 319 ASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSS 378
+A + A T+ W E+L TGY+ + L+ C L + + A + +++ +K+ +
Sbjct: 181 GAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKN 239
Query: 379 LDCGAVSLLKPAKSL 393
VSLL P ++L
Sbjct: 240 SKYHGVSLLNPPETL 254
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + + C L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
V +Y +DI+ + + E + + YM QP+I MR+ILVDWL EV +++L ETL+L
Sbjct: 5 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
V+ +DRFLS ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D Y ++QVL
Sbjct: 65 AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
E +L+ L + L PT FL +Y ++ ++E++ FL EL + + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
IAA+A + A T+ W E+L TGY+ + L+ L + + A + +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
+ VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 157 bits (398), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 3/220 (1%)
Query: 140 EYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVH 199
EYV DIY + + E+E V E+ MR+IL+DWL +V KF L+ ET+Y+TV
Sbjct: 3 EYVKDIYAYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVS 62
Query: 200 IVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKA 259
I+DRF+ + +K LQLVG++AM IA KYEE++ PE+ DF ++D+ Y + Q+ E
Sbjct: 63 IIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMK 122
Query: 260 ILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAA 319
ILR L + L P P FL R K D E + +L EL + Y +V + PS IAA
Sbjct: 123 ILRALNFGLGRPLPLHFLRRASKIG-EVDVEQHTLAKYLMELTMLDY-DMVHFPPSQIAA 180
Query: 320 SAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVK 359
A A L+ N WT TL+H+ Y+E+ L + L K
Sbjct: 181 GAFCLALKILD-NGEWTPTLQHYLSYTEESLLPVMQHLAK 219
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 3/220 (1%)
Query: 140 EYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVH 199
EYV DIY + + E V E+ MR+IL+DWL +V KF L+ ET+Y+TV
Sbjct: 5 EYVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVS 64
Query: 200 IVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKA 259
I+DRF+ ++ +K LQLVG++AM IA KYEE++ PE+ DF ++D+ Y + Q+ E
Sbjct: 65 IIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMK 124
Query: 260 ILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAA 319
ILR L + L P P FL R K D E + +L EL + Y +V + PS IAA
Sbjct: 125 ILRALNFGLGRPLPLHFLRRASKIG-EVDVEQHTLAKYLMELTMLDY-DMVHFPPSQIAA 182
Query: 320 SAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVK 359
A A L+ N WT TL+H+ Y+E+ L + L K
Sbjct: 183 GAFSLALKILD-NGEWTPTLQHYLSYTEESLLPVMQHLAK 221
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 157 RVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFL-SKETIQRKEL 215
R +++ P + KMR+IL+DWL EV ++L ET YL DR++ ++E + + L
Sbjct: 34 RDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLL 93
Query: 216 QLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYV 275
QL+GIS++ IA K EEI+ P+++ F ++D A +++L E I++ L+W L+ T
Sbjct: 94 QLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVS 153
Query: 276 FLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVL------------------YCPSMI 317
+L Y++ + +D L E+ QYP + + ++
Sbjct: 154 WLNVYMQVAYLND---------LHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGIL 204
Query: 318 AASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAE---SKLK 370
AASA+Y +E ++ +GY + NC K +V F E SKLK
Sbjct: 205 AASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVPFAMVIRETGSSKLK 252
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 12/206 (5%)
Query: 157 RVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQ 216
R + Q EI MR +L W+ EV + E L ++ +DR+LS ++ +LQ
Sbjct: 55 RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQ 114
Query: 217 LVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVF 276
L+G ML+A K E + +D A Q+ E +L KL+W L + F
Sbjct: 115 LLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDF 174
Query: 277 LVRYI-KASVTSDKEM---ENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAA-----RC 327
L + + S+ D++ ++ FLA L Y T +Y PSMIA ++ AA C
Sbjct: 175 LAFILHRLSLPRDRQALVKKHAQTFLA-LCATDY-TFAMYPPSMIATGSIGAAVQGLGAC 232
Query: 328 TLNKNPFWTETLKHHTGYSEDQLRNC 353
+++ + TE L TG D LR C
Sbjct: 233 SMSGDEL-TELLAGITGTEVDCLRAC 257
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 165 QPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAML 224
Q E+ MR I+ W+ EV + + E L ++ +DRFLS E +++ LQL+G + M
Sbjct: 35 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 94
Query: 225 IACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYI 281
+A K +E +D++ E++L E ++ KL+W+L TP+ F+ ++
Sbjct: 95 VASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL 151
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 165 QPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAML 224
Q E+ MR I+ W+ EV + + E L ++ +DRFLS E +++ LQL+G + M
Sbjct: 49 QKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMF 108
Query: 225 IACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYI 281
+A K +E +D++ E++L E ++ KL+W+L TP+ F+ ++
Sbjct: 109 VASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFL 165
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 16/200 (8%)
Query: 163 DAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISA 222
+ Q E+ R+IL+ W+ + FEL L+V I+DR+L K+ +K LQ +G +
Sbjct: 42 EIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAAC 101
Query: 223 MLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIK 282
+LI K + V+ +S + +++ EK IL L+W T V ++
Sbjct: 102 VLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD----TEAVLATDFLI 157
Query: 283 ASVTSDKEMENMVFFLAELGQ------MQYPTIVLYCPSMIAASAVYAARCTLNKN--PF 334
+ K E++ L E + P I L P +I A + T N N P
Sbjct: 158 PLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRP- 216
Query: 335 WT---ETLKHHTGYSEDQLR 351
WT E L +S + +R
Sbjct: 217 WTCYLEDLSSILNFSTNTVR 236
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 163 DAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISA 222
+ Q E+ R+IL+ W+ + FEL L+V I+DR+L K+ +K LQ +G +
Sbjct: 21 EIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAAC 80
Query: 223 MLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIK 282
+LI K + V+ +S + +++ EK IL L+W T V ++
Sbjct: 81 VLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD----TEAVLATDFLI 136
Query: 283 ASVTSDKEMENMVFFLAELGQ------MQYPTIVLYCPSMIAASAVYAARCTLNKN--PF 334
+ K E++ L E + P I L P +I A + T N N P
Sbjct: 137 PLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRP- 195
Query: 335 WT---ETLKHHTGYSEDQLRN 352
WT E L +S + +R
Sbjct: 196 WTCYLEDLSSILNFSTNTVRT 216
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 20/235 (8%)
Query: 148 FYKLTEDEGRVHD----YMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDR 203
FY + E E R + Q + + MR +L W+ V +++ L P + L ++++DR
Sbjct: 22 FYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDR 81
Query: 204 FLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRK 263
L + + ++ Q G + +L+A K + + + ++ R++++ EK +L K
Sbjct: 82 LLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEK 141
Query: 264 LEWH----LTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAA 319
L W L L++ + S +++ F+ E+ + +V + A
Sbjct: 142 LAWRTEAVLATDVTSFLLLKLVGGS-------QHLDFWHHEVNTLITKALVDPLTGSLPA 194
Query: 320 SAVYAARCTL--NKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAV 372
S + AA C L N +T H+G QL + V AA E L +V
Sbjct: 195 SIISAAGCALLVPANVIPQDT---HSGGVVPQLASILGCDVSVLQAAVEQILTSV 246
>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
Length = 235
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 158 VHDYMDAQPEINAKMRSILVDWLT-EVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQ 216
V D+ D E+ AK+ SILVDW + EV F+L+ + L + D LS +I+ Q
Sbjct: 154 VEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQL-----LNDEMLSPGSIKSSRKQ 208
Query: 217 LVGISAMLIACKY 229
+ G+ A+ + Y
Sbjct: 209 IDGLKAVGLDFVY 221
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 77/183 (42%), Gaps = 34/183 (18%)
Query: 166 PEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLI 225
P A+ R ++ +V + L +TL + RF + ++ + G + +
Sbjct: 34 PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL 93
Query: 226 ACKYEEIWAPE------------VND--FVRISDSAYLREQVLAAEKAILRKLEWHLTVP 271
A K EE P+ +ND F + D +E+V+ E+ +L+ +++ L V
Sbjct: 94 AGKVEE--TPKKCKDIIKTARSLLNDVQFGQFGDDP--KEEVMVLERILLQTIKFDLQVE 149
Query: 272 TPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTI---------VLYCPSMIAASAV 322
PY FL++Y K +++ +V QM + + + + P +IA + +
Sbjct: 150 HPYQFLLKYAKQLKGDKNKIQKLV-------QMAWTFVNDSLCTTLSLQWEPEIIAVAVM 202
Query: 323 YAA 325
Y A
Sbjct: 203 YLA 205
>pdb|1JKW|A Chain A, Structure Of Cyclin Mcs2
Length = 323
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 203 RFLSKETIQRKELQLVGISAMLIACKYEE--IWAPEVNDFVRISDSAYLR--EQVLAAEK 258
RF ++ +++ ++ +ACK +E + +P+ +R S + EQ+L E
Sbjct: 89 RFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYEL 148
Query: 259 AILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVF-------FLAELGQMQYPTIVL 311
++++L +HL V PY ++ T +EN FL + +L
Sbjct: 149 LLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTD--AYLL 206
Query: 312 YCPSMIAASAVY--AARCTLNKNPFWTETL 339
Y PS IA +A+ A+R + + +E+L
Sbjct: 207 YTPSQIALTAILSSASRAGITMESYLSESL 236
>pdb|1KXU|A Chain A, Cyclin H, A Positive Regulatory Subunit Of Cdk Activating
Kinase
Length = 333
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 203 RFLSKETIQRKELQLVGISAMLIACKYEE--IWAPEVNDFVRISDSAYLR--EQVLAAEK 258
RF ++ +++ ++ +ACK +E + +P+ +R S + EQ+L E
Sbjct: 99 RFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYEL 158
Query: 259 AILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVF-------FLAELGQMQYPTIVL 311
++++L +HL V PY ++ T +EN FL + +L
Sbjct: 159 LLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTD--AYLL 216
Query: 312 YCPSMIAASAVY--AARCTLNKNPFWTETL 339
Y PS IA +A+ A+R + + +E+L
Sbjct: 217 YTPSQIALTAILSSASRAGITMESYLSESL 246
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV+ IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAA 319
H P P + LV IK +TS K E++V F LG ++P P I +
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFIVS 208
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV +K +TS K +E++V F LG ++P P I
Sbjct: 158 HFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG--KHPVSCKDTPGFI 206
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P + LV IK +TS K E++V F LG ++P P I
Sbjct: 158 HFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 206
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 146 YKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDW 179
++ Y L D G +HD D+QP K+ ++ W
Sbjct: 487 WQLYDLARDPGEIHDLADSQP---GKLAELIEHW 517
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P LV IK TS K E++V F LG ++P P I
Sbjct: 147 HFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 195
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 267 HLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMI 317
H P P LV IK TS K E++V F LG ++P P I
Sbjct: 180 HFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALG--KHPVSCKDTPGFI 228
>pdb|2D0T|A Chain A, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0T|B Chain B, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|A Chain A, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|B Chain B, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
Length = 406
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 235 PEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFL 277
P V +FV A LRE A KA++ +HL + T Y+ +
Sbjct: 317 PSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQIVTKYILI 359
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 149 YKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETL-----------YLT 197
Y + + G V D + A N ++ ++L DW ++ K ++ ++ YLT
Sbjct: 193 YAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLT 252
Query: 198 VHIVDRFLSKET 209
H++DR SK T
Sbjct: 253 EHVMDRIGSKGT 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,297,473
Number of Sequences: 62578
Number of extensions: 387402
Number of successful extensions: 1096
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 51
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)