Query 016078
Match_columns 395
No_of_seqs 294 out of 1798
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 5.1E-59 1.8E-63 446.5 27.6 254 138-393 3-258 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 3.3E-58 1.1E-62 443.1 20.5 254 136-393 1-257 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 2.9E-51 9.9E-56 392.0 24.0 237 131-371 10-256 (257)
4 1w98_B Cyclin E, G1/S-specific 100.0 6.4E-51 2.2E-55 395.2 24.4 250 133-392 9-273 (283)
5 2f2c_A Cyclin homolog, V-cycli 100.0 1.9E-50 6.6E-55 385.7 25.6 231 130-365 10-250 (254)
6 1f5q_B Gamma herpesvirus cycli 100.0 2.1E-49 7.2E-54 378.7 22.2 229 124-364 7-243 (252)
7 3g33_B CCND3 protein; Ser/Thr 100.0 6.4E-49 2.2E-53 385.2 25.7 228 133-363 31-267 (306)
8 2w96_A G1/S-specific cyclin-D1 100.0 6.4E-47 2.2E-51 364.6 23.0 227 133-364 18-258 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 4.2E-38 1.4E-42 300.4 20.6 206 166-377 24-253 (257)
10 3rgf_B Cyclin-C; protein kinas 100.0 1.7E-37 5.7E-42 301.3 21.9 207 168-380 38-263 (285)
11 2i53_A Cyclin K; cell cycle, t 100.0 2.1E-37 7.1E-42 295.5 17.3 197 164-363 32-251 (258)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 3.6E-36 1.2E-40 300.5 13.1 203 166-374 31-257 (358)
13 1zp2_A RNA polymerase II holoe 100.0 3.4E-35 1.2E-39 277.0 18.8 186 173-364 28-221 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 5.1E-34 1.7E-38 281.4 22.7 206 169-376 53-277 (323)
15 1c9b_A General transcription f 100.0 1.1E-27 3.7E-32 221.3 21.7 185 171-361 3-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.1E-23 7.2E-28 191.4 21.6 185 171-361 7-193 (200)
17 3k7a_M Transcription initiatio 99.8 1.8E-19 6E-24 179.1 6.7 183 173-361 126-320 (345)
18 4bbr_M Transcription initiatio 99.4 5.3E-13 1.8E-17 132.4 9.2 183 174-362 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 3.1E-06 1.1E-10 81.4 11.7 106 175-283 76-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.7 0.0064 2.2E-07 54.6 9.4 88 178-268 110-197 (200)
21 1c9b_A General transcription f 95.2 0.12 4.3E-06 46.4 10.6 86 273-361 8-93 (207)
22 1zp2_A RNA polymerase II holoe 89.4 0.6 2E-05 42.7 6.5 84 178-265 136-219 (235)
23 2ivx_A Cyclin-T2; transcriptio 88.6 1.5 5.1E-05 40.5 8.6 87 178-264 148-238 (257)
24 4bbr_M Transcription initiatio 88.3 2.8 9.4E-05 40.9 10.7 87 272-361 128-214 (345)
25 2i53_A Cyclin K; cell cycle, t 87.2 1.6 5.5E-05 40.2 7.9 88 178-265 153-250 (258)
26 2b9r_A Human cyclin B1; cell c 87.1 4.2 0.00014 37.9 10.8 85 275-361 43-129 (269)
27 2w96_A G1/S-specific cyclin-D1 83.9 7.2 0.00025 36.2 10.7 73 288-361 74-148 (271)
28 2pk2_A Cyclin-T1, protein TAT; 83.2 1.4 4.7E-05 43.3 5.6 88 178-265 155-246 (358)
29 2cch_B Cyclin A2, cyclin-A; co 83.2 5 0.00017 37.1 9.3 75 286-361 54-130 (260)
30 1g3n_C V-cyclin; cyclin-depend 82.6 6.5 0.00022 36.2 9.8 75 286-361 66-142 (257)
31 3k7a_M Transcription initiatio 81.8 1.3 4.5E-05 43.1 4.9 87 273-362 129-215 (345)
32 2f2c_A Cyclin homolog, V-cycli 81.7 7 0.00024 35.9 9.6 76 285-361 66-143 (254)
33 3rgf_B Cyclin-C; protein kinas 81.6 11 0.00038 35.3 11.2 85 275-361 48-148 (285)
34 3h4c_A Transcription factor TF 80.7 6.8 0.00023 35.5 8.6 88 175-266 14-104 (260)
35 3g33_B CCND3 protein; Ser/Thr 78.4 8.7 0.0003 36.6 9.3 73 288-361 88-162 (306)
36 1w98_B Cyclin E, G1/S-specific 77.0 14 0.00047 34.6 10.2 74 287-361 66-142 (283)
37 1jkw_A Cyclin H; cell cycle, c 70.5 32 0.0011 32.9 11.1 82 276-360 63-153 (323)
38 2pmi_B PHO85 cyclin PHO80, ami 66.9 36 0.0012 32.3 10.4 90 271-361 75-166 (293)
39 1f5q_B Gamma herpesvirus cycli 59.0 53 0.0018 30.2 9.8 72 288-360 66-139 (252)
40 3v7d_A Suppressor of kinetocho 35.8 27 0.00092 30.2 3.6 55 187-253 99-156 (169)
41 2p1m_A SKP1-like protein 1A; F 33.3 33 0.0011 29.2 3.7 38 215-253 111-148 (160)
42 2ast_A S-phase kinase-associat 32.9 35 0.0012 28.9 3.8 54 188-253 93-149 (159)
43 3m03_A ORC6, origin recognitio 31.3 1.5E+02 0.0053 23.2 6.9 50 312-362 43-92 (95)
44 2qdj_A Retinoblastoma-associat 28.3 1.1E+02 0.0039 29.0 6.8 65 180-245 6-74 (304)
45 3o0g_D Cyclin-dependent kinase 27.6 43 0.0015 28.2 3.2 66 174-240 28-104 (149)
46 1unl_D Cyclin-dependent kinase 27.2 42 0.0014 29.5 3.2 66 174-240 73-149 (208)
47 3m03_A ORC6, origin recognitio 23.4 2.7E+02 0.0092 21.8 8.7 78 180-262 6-89 (95)
48 1fs1_B SKP1, cyclin A/CDK2-ass 22.8 59 0.002 27.0 3.3 46 187-243 87-135 (141)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=5.1e-59 Score=446.46 Aligned_cols=254 Identities=37% Similarity=0.617 Sum_probs=243.3
Q ss_pred ccccHHHHHHHHHHHHhccCC-CCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhH
Q 016078 138 VVEYVDDIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQ 216 (395)
Q Consensus 138 ~~eY~~dI~~~l~~~E~~~~~-~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lq 216 (395)
|.||++|||+||+..|.++.| ++||..|++|++.||.+++|||++||.+|+|+++|+|+|++|||||++...+.+.++|
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq 82 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ 82 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence 789999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHH
Q 016078 217 LVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVF 296 (395)
Q Consensus 217 LvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~ 296 (395)
|+|+||||||||+||.++|++.||+.++++.|++++|++||+.||++|+|++++|||++||.+|++.....+.++..+|+
T Consensus 83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~ 162 (260)
T 2cch_B 83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM 162 (260)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999984333448999999
Q ss_pred HHHHHhhcchh-hhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHhhccccchHHHHHh
Q 016078 297 FLAELGQMQYP-TIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKK 375 (395)
Q Consensus 297 ~l~El~L~d~~-~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~~~~~~~~v~~K 375 (395)
+++|++++|+. ++. |+||.||+||+++|+..++. +.|++.|.+++|+++++|.+|++.|..++.+.+..++++|++|
T Consensus 163 ~l~e~sl~~~~~~~~-~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~K 240 (260)
T 2cch_B 163 FLGELSLIDADPYLK-YLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREK 240 (260)
T ss_dssp HHHHHHHHCHHHHTT-SCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHH
T ss_pred HHHHHHHHhHHHHhC-CCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999999 888 99999999999999999986 6799999999999999999999999999988888899999999
Q ss_pred hCCCCCCceeecCCCCcc
Q 016078 376 FSSLDCGAVSLLKPAKSL 393 (395)
Q Consensus 376 Ys~~~~~~Va~~~~~~~~ 393 (395)
|++++|+.||.+||++.+
T Consensus 241 y~~~~~~~vs~~~~~~~~ 258 (260)
T 2cch_B 241 YKNSKYHGVSLLNPPETL 258 (260)
T ss_dssp HTSGGGTTGGGSCCCSCC
T ss_pred HCcccccceeCCCCcccC
Confidence 999999999999999865
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.3e-58 Score=443.13 Aligned_cols=254 Identities=37% Similarity=0.589 Sum_probs=237.4
Q ss_pred ccccccHHHHHHHHHHHHhccCC-CCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchh
Q 016078 136 LAVVEYVDDIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKE 214 (395)
Q Consensus 136 ~~~~eY~~dI~~~l~~~E~~~~~-~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~ 214 (395)
++|+||++|||+||+..|.++.| ++||+.| +|+++||.+++|||+++|.+|+++++|+|+|++|||||++...+++.+
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 36899999999999999999988 8999988 999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHH
Q 016078 215 LQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENM 294 (395)
Q Consensus 215 lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~l 294 (395)
+||+|+||||||||+||.++|++.||+.++++.|++++|++||+.||++|+|++++|||++||++|++. .+.+.+++.+
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~-~~~~~~~~~~ 158 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKI-GEVDVEQHTL 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHS-SCCCHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHh-cCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 4567889999
Q ss_pred HHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHhhccc--cchHHH
Q 016078 295 VFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAE--SKLKAV 372 (395)
Q Consensus 295 a~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~~~--~~~~~v 372 (395)
|++++|+++.|+.++. |+||.||+||+++|+..++.. .|++.|.+++||++++|.+|++.|..++..... .++++|
T Consensus 159 a~~l~e~sl~~~~~~~-~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai 236 (269)
T 2b9r_A 159 AKYLMELTMLDYDMVH-FPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTV 236 (269)
T ss_dssp HHHHHHHGGGCGGGSS-SCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHH
T ss_pred HHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 9999999999999999 999999999999999999875 699999999999999999999999998876543 588999
Q ss_pred HHhhCCCCCCceeecCCCCcc
Q 016078 373 YKKFSSLDCGAVSLLKPAKSL 393 (395)
Q Consensus 373 ~~KYs~~~~~~Va~~~~~~~~ 393 (395)
++||++++|+.||.+||+++.
T Consensus 237 ~~Ky~~~~~~~vs~~~~~~~~ 257 (269)
T 2b9r_A 237 KNKYATSKHAKISTLPQLNSA 257 (269)
T ss_dssp HHHTTSGGGTTGGGSSCCSGG
T ss_pred HHHhcchhhCcccCCCCCChH
Confidence 999999999999999999864
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.9e-51 Score=392.02 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=212.2
Q ss_pred CCCCcccccccHHHHHHHHHHHHhccCC-CCcc-ccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Q 016078 131 DIDNELAVVEYVDDIYKFYKLTEDEGRV-HDYM-DAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKE 208 (395)
Q Consensus 131 d~~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl-~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~ 208 (395)
+.+||.++.| +||| +|+..|.++.| ++|+ ..|++|++.||.++||||++||.+|+|.++|+|+||+|||||++..
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 4568888888 9999 99999999999 7898 5899999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCc
Q 016078 209 TIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSD 288 (395)
Q Consensus 209 ~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~ 288 (395)
.+.+.++||+|+||||||||+||.++|++.||++++++.|++++|++||+.||++|+|++++|||++||++|++.....+
T Consensus 87 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~ 166 (257)
T 1g3n_C 87 QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGS 166 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998843222
Q ss_pred H---HHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCC-----CCchHHHHHhhCCCHHHHHHHHHHHHHH
Q 016078 289 K---EMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKN-----PFWTETLKHHTGYSEDQLRNCAKLLVKF 360 (395)
Q Consensus 289 ~---~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~-----~~W~~~L~~~tg~s~~~L~~c~~~L~~~ 360 (395)
. .+..+|+++++++++|+.++. |+||.||+||+++|++.++.. +.|.+.|.+++||++++|.+|++.|..+
T Consensus 167 ~~~~~~~~~a~~~le~~l~d~~~~~-~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 167 QHLDFWHHEVNTLITKALVDPLTGS-LPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTS 245 (257)
T ss_dssp TTHHHHHHHHHHHHHHHHTSTTGGG-SCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhC-cCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2 246789999999999999999 999999999999999998743 5799999999999999999999999999
Q ss_pred HhhccccchHH
Q 016078 361 HSAAAESKLKA 371 (395)
Q Consensus 361 ~~~~~~~~~~~ 371 (395)
+.+.+...+++
T Consensus 246 ~~~~~~~~l~~ 256 (257)
T 1g3n_C 246 VSDFDLRILDS 256 (257)
T ss_dssp HHHCCCCC---
T ss_pred HHHCCHHhhcc
Confidence 87766666543
No 4
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.4e-51 Score=395.18 Aligned_cols=250 Identities=27% Similarity=0.476 Sum_probs=226.9
Q ss_pred CCcccccccHHHHHHHHHHHHhccCC-CCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc-ccc
Q 016078 133 DNELAVVEYVDDIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSK-ETI 210 (395)
Q Consensus 133 ~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~-~~v 210 (395)
.+|..+.||.+|||++|+..|.++.| ++||..|++|++.||.+++|||+++|.+|++.++|+|+||+|||||++. ..+
T Consensus 9 ~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 9 PLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp CSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 46788899999999999999999988 8999999999999999999999999999999999999999999999998 689
Q ss_pred cchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCc--
Q 016078 211 QRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSD-- 288 (395)
Q Consensus 211 ~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~-- 288 (395)
.+.++||+|+||||||||+||.++|.+.||++++++.|++++|++||+.||++|+|++++|||++||.+|++.....+
T Consensus 89 ~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 89 VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998732211
Q ss_pred --------HHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHH
Q 016078 289 --------KEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKF 360 (395)
Q Consensus 289 --------~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~ 360 (395)
......+.+++|++++|+.++. |+||.|||||+|+|+ |.+.+..++||++++|.+|++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~~~llelsl~d~~~l~-~~PS~iAaAai~la~--------~~~~l~~~tg~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 169 EVLLPQYPQQIFIQIAELLDLCVLDVDCLE-FPYGILAASALYHFS--------SSELMQKVSGYQWCDIENCVKWMVPF 239 (283)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHSGGGGG-SCHHHHHHHHHHHTS--------CHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHH--------ChHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1223457789999999999999 999999999999983 78999999999999999999999988
Q ss_pred Hhhc---cccchHHHHHhhCCCCCCceeecCCCCc
Q 016078 361 HSAA---AESKLKAVYKKFSSLDCGAVSLLKPAKS 392 (395)
Q Consensus 361 ~~~~---~~~~~~~v~~KYs~~~~~~Va~~~~~~~ 392 (395)
+... ..++++. |+||++++|+.|+..++.-.
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 273 (283)
T 1w98_B 240 AMVIRETGSSKLKH-FRGVADEDAHNIQTHRDSLD 273 (283)
T ss_dssp HHHHHHHCCCCCCC-CTTSCGGGGGGBCCCCCHHH
T ss_pred HHHHHhcChHhhcc-hhccCHHhccCcccCcchHH
Confidence 7643 4556654 89999999999999887533
No 5
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.9e-50 Score=385.70 Aligned_cols=231 Identities=20% Similarity=0.268 Sum_probs=210.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHHhccCC-CCccc-cCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc
Q 016078 130 TDIDNELAVVEYVDDIYKFYKLTEDEGRV-HDYMD-AQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSK 207 (395)
Q Consensus 130 ~d~~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~-~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~ 207 (395)
.+.+||.++.| +|||+ |+..|.++.| ++||. .|+++++.||.++||||++||.+|++.++|+|+||+|+|||++.
T Consensus 10 ~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~ 86 (254)
T 2f2c_A 10 RAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCK 86 (254)
T ss_dssp BCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTT
T ss_pred CCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHcc
Confidence 35679999988 99999 9999999999 79995 89999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCC
Q 016078 208 ETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTS 287 (395)
Q Consensus 208 ~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~ 287 (395)
..+.+.++||+|+||||||||+||.++|++.||++++++.|++++|++||+.||++|+|++++|||++||++|++.. +.
T Consensus 87 ~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~-~~ 165 (254)
T 2f2c_A 87 KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNAL-KI 165 (254)
T ss_dssp SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHT-TC
T ss_pred CCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984 33
Q ss_pred cHH----HHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCC-c---hHHHHHhhCCCHHHHHHHHHHHHH
Q 016078 288 DKE----MENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPF-W---TETLKHHTGYSEDQLRNCAKLLVK 359 (395)
Q Consensus 288 ~~~----~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~-W---~~~L~~~tg~s~~~L~~c~~~L~~ 359 (395)
+.+ ++.+|.++++++++|+.++. |+||.|||||+++|+..++..+. | ++.|.+++||++++|.+|++.|..
T Consensus 166 ~~~~~~~~~~~a~~ll~~~l~d~~~~~-~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~ 244 (254)
T 2f2c_A 166 PEDLWPQLYEAASTTICKALIQPNIAL-LSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSE 244 (254)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSGGGTT-SCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHcCcchhc-cCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 332 46789999999999999999 99999999999999998755444 5 889999999999999999999998
Q ss_pred HHhhcc
Q 016078 360 FHSAAA 365 (395)
Q Consensus 360 ~~~~~~ 365 (395)
++.+.+
T Consensus 245 ~~~~~~ 250 (254)
T 2f2c_A 245 AFSLYD 250 (254)
T ss_dssp HHHTCC
T ss_pred HHHhCC
Confidence 876543
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-49 Score=378.65 Aligned_cols=229 Identities=14% Similarity=0.181 Sum_probs=204.8
Q ss_pred ccCCCCCCCCCcccccccHHHHHHHHHHHHhccCCCCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 016078 124 ISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDR 203 (395)
Q Consensus 124 ~~diD~~d~~n~~~~~eY~~dI~~~l~~~E~~~~~~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDR 203 (395)
...+|. +..||.++.| |||++++..|.++.| +..|++|++.||.++||||++||.+|+|.++|+|+||+|+||
T Consensus 7 ~~~~~~-~~~dp~l~~d---~i~~~l~~~E~~~~p---~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDR 79 (252)
T 1f5q_B 7 QGFLDS-SLLNEEDCRQ---MIYRSEREHDARMVG---VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDE 79 (252)
T ss_dssp CSSCSC-TTCCHHHHHH---HHHHHHHHHHHHHSS---SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCCc-CcCCHHHhHH---HHHHHHHHHHHHhCc---CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 344554 3457777754 999999999999887 667899999999999999999999999999999999999999
Q ss_pred HhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHH
Q 016078 204 FLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKA 283 (395)
Q Consensus 204 fLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~ 283 (395)
||+...+.+.++||+|+||||||||+||+++|.+.+|++++++.|+.++|++||+.||++|+|+++.|||++||++|++.
T Consensus 80 fLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 159 (252)
T 1f5q_B 80 LFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159 (252)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCcH----HHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCc----hHHHHHhhCCCHHHHHHHHH
Q 016078 284 SVTSDK----EMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFW----TETLKHHTGYSEDQLRNCAK 355 (395)
Q Consensus 284 ~~~~~~----~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W----~~~L~~~tg~s~~~L~~c~~ 355 (395)
. +.+. .+..++.++++++++|+.|+. |+||+||+||+ ++.++..+.| ++.|.++|||++++|.+|++
T Consensus 160 ~-~~~~~~~~~~~~~a~~~l~~~l~d~~~l~-~~PS~iAaaa~---~~~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~ 234 (252)
T 1f5q_B 160 M-HAPREDYLNIYNLCRPKIFCALCDGRSAM-KRPVLITLACM---HLTMNQKYDYYENRIDGVCKSLYITKEELHQCCD 234 (252)
T ss_dssp T-TCCHHHHHHHHHHHHHHHHHHHHCHHHHT-SCHHHHHHHHH---HHHHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred c-CCCcchHHHHHHHHHHHHHHHHhchhhhc-cCHHHHHHHHH---HHHhccCCCchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 3 3232 356789999999999999999 99999999994 4455655455 77899999999999999999
Q ss_pred HHHHHHhhc
Q 016078 356 LLVKFHSAA 364 (395)
Q Consensus 356 ~L~~~~~~~ 364 (395)
.|..++...
T Consensus 235 ~i~~~l~~~ 243 (252)
T 1f5q_B 235 LVDIAIVSF 243 (252)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999887553
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-49 Score=385.18 Aligned_cols=228 Identities=25% Similarity=0.296 Sum_probs=206.2
Q ss_pred CCcccccccHHHHHHHHHHHHhccCC-CCccc-cCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccc
Q 016078 133 DNELAVVEYVDDIYKFYKLTEDEGRV-HDYMD-AQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETI 210 (395)
Q Consensus 133 ~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~-~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v 210 (395)
.||..+ |.+|||++|...|.++.| ++|+. .|++|++.||.++||||++||.+|+|.++|+|+||+||||||+...+
T Consensus 31 ~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v 108 (306)
T 3g33_B 31 PDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPT 108 (306)
T ss_dssp --------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCC
T ss_pred CCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCC
Confidence 355554 999999999999999999 78996 69999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCc--
Q 016078 211 QRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSD-- 288 (395)
Q Consensus 211 ~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~-- 288 (395)
.+.++||+|+||||||||+||.++|.+.+|++++++.|++++|++||+.||++|+|++++|||++||.+|++.....+
T Consensus 109 ~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~ 188 (306)
T 3g33_B 109 RKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR 188 (306)
T ss_dssp CGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998732211
Q ss_pred -HHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCc----hHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 016078 289 -KEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFW----TETLKHHTGYSEDQLRNCAKLLVKFHSA 363 (395)
Q Consensus 289 -~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W----~~~L~~~tg~s~~~L~~c~~~L~~~~~~ 363 (395)
..+...++++++++++|+.|+. |+||.||||||++|++.++..+.| ++.|.+++||++++|.+|++.|..++.+
T Consensus 189 ~~~~~~~a~~~l~lsl~d~~~l~-~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 189 QALVKKHAQTFLALCATDYTFAM-YPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTT-SCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc-CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 2356789999999999999999 999999999999999999976655 6788999999999999999999999875
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=6.4e-47 Score=364.59 Aligned_cols=227 Identities=26% Similarity=0.369 Sum_probs=202.6
Q ss_pred CCcccccccHHHHHHHHHHHHhccCC-CCcc-ccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccc
Q 016078 133 DNELAVVEYVDDIYKFYKLTEDEGRV-HDYM-DAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETI 210 (395)
Q Consensus 133 ~n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl-~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v 210 (395)
.||..+ .+|||++|...|.++.| ++|+ ..|++|++.||.+++|||++++.+|+++++|+|+||+|||||++...+
T Consensus 18 ~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v 94 (271)
T 2w96_A 18 PDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV 94 (271)
T ss_dssp ----------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC
T ss_pred CCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc
Confidence 455555 67999999999999999 7887 579999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHH
Q 016078 211 QRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKE 290 (395)
Q Consensus 211 ~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~ 290 (395)
.+.++||+|+||||||||+||++||++++|+.++++.|++++|++||+.||++|+|++++|||++||.+|++.. +.+.+
T Consensus 95 ~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l-~~~~~ 173 (271)
T 2w96_A 95 KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKM-PEAEE 173 (271)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTS-CCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc-CCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999973 33433
Q ss_pred ----HHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCC----CCC----chHHHHHhhCCCHHHHHHHHHHHH
Q 016078 291 ----MENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNK----NPF----WTETLKHHTGYSEDQLRNCAKLLV 358 (395)
Q Consensus 291 ----~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~----~~~----W~~~L~~~tg~s~~~L~~c~~~L~ 358 (395)
+...|.+++++++.|+.++. |+||.||+|||++|+..++. .+. |.+.|.+++|+++++|.+|++.|.
T Consensus 174 ~~~~~~~~a~~~l~~~~~d~~~~~-~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~ 252 (271)
T 2w96_A 174 NKQIIRKHAQTFVALCATDVKFIS-NPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIE 252 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHH-SCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc-cCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 24678899999999999999 99999999999999988852 233 456799999999999999999999
Q ss_pred HHHhhc
Q 016078 359 KFHSAA 364 (395)
Q Consensus 359 ~~~~~~ 364 (395)
.++...
T Consensus 253 ~l~~~~ 258 (271)
T 2w96_A 253 ALLESS 258 (271)
T ss_dssp HHHTTT
T ss_pred HHHHHH
Confidence 987653
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=4.2e-38 Score=300.44 Aligned_cols=206 Identities=17% Similarity=0.295 Sum_probs=182.9
Q ss_pred CcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhc-
Q 016078 166 PEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRIS- 244 (395)
Q Consensus 166 ~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is- 244 (395)
++....||..+++||.++|.+|+|+++|+++|++|||||++.+++.+.++|+||+||||||||+||. ++.+.||+.++
T Consensus 24 ~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 24 ADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 4455789999999999999999999999999999999999999999999999999999999999999 89999997654
Q ss_pred -------------ccccc--HHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcch-hh
Q 016078 245 -------------DSAYL--REQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQY-PT 308 (395)
Q Consensus 245 -------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~-~~ 308 (395)
++.|+ +++|++||+.||++|+|++++|||+.||.+|++. .+.+.++..+|+++++.+++++ -+
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~-l~~~~~~~~~A~~~~~~sl~~~~~~ 181 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFC 181 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHH-hCCCcHHHHHHHHHHHhhhhcccHH
Confidence 55676 8999999999999999999999999999999998 4557889999999999998644 46
Q ss_pred hccCChHHHHHHHHHHHHHHhCCC-------CCchHHHHHhhCCCHHHHHHHHHHHHHHHhhccccchHHHHHhhC
Q 016078 309 IVLYCPSMIAASAVYAARCTLNKN-------PFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFS 377 (395)
Q Consensus 309 ~~~~~PS~IAaaal~lA~~~l~~~-------~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~~~~~~~~v~~KYs 377 (395)
+. |+||.||+|||++|...++.. +.|.+.+ .+|+++++|.+|++.|+.++...+ .+++.|++++.
T Consensus 182 l~-~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~-~~l~~~~~~~~ 253 (257)
T 2ivx_A 182 LQ-YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTP-NRLKKIRNWRA 253 (257)
T ss_dssp GT-SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSH-HHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhCh-HHhhHHHHhhh
Confidence 77 999999999999999998732 3587654 568999999999999999997654 47788888765
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=301.27 Aligned_cols=207 Identities=14% Similarity=0.248 Sum_probs=187.8
Q ss_pred CCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhcc--
Q 016078 168 INAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISD-- 245 (395)
Q Consensus 168 i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~-- 245 (395)
--.+||..+++||.++|.+|+|+++|+++|++|||||++...+.+.++|+||+||||||||+||+..|.+.|++.++.
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999999999999999999999999999889999987653
Q ss_pred ------------ccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCC
Q 016078 246 ------------SAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYC 313 (395)
Q Consensus 246 ------------~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~ 313 (395)
..|++++|++||+.||++|+|+++++||+.||.+|++. ++.+.++.++|+++++.++.++.++. |+
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~-l~~~~~~~~~A~~~l~~sl~t~~~l~-~~ 195 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD-MGQEDMLLPLAWRIVNDTYRTDLCLL-YP 195 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSHHHH-SC
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHccChhhc-cC
Confidence 24789999999999999999999999999999999998 45578899999999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHhCCC-CCchHHHHHhhCCCHHHHHHHHHHHHHHHhh----ccccchHHHHHhhCCCC
Q 016078 314 PSMIAASAVYAARCTLNKN-PFWTETLKHHTGYSEDQLRNCAKLLVKFHSA----AAESKLKAVYKKFSSLD 380 (395)
Q Consensus 314 PS~IAaaal~lA~~~l~~~-~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~----~~~~~~~~v~~KYs~~~ 380 (395)
||.||+||||+|.++++.. +.|.. .+|+++++|.+|+..|+.++.. .......++++||+.++
T Consensus 196 Ps~IAaAaiylA~~~~~~~~~~W~~----~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 196 PFMIALACLHVACVVQQKDARQWFA----ELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHH----TSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCChhhHHH----HHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 9999999999999998853 34654 4699999999999999999876 23456889999999998
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-37 Score=295.45 Aligned_cols=197 Identities=21% Similarity=0.364 Sum_probs=174.7
Q ss_pred cCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHh
Q 016078 164 AQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRI 243 (395)
Q Consensus 164 ~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~i 243 (395)
.++++...||..+++||.++|.+|+|+++|+++|++|||||++..++.+.++|++|+||||||||+||. ++.+.||+.+
T Consensus 32 ~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~ 110 (258)
T 2i53_A 32 LDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKT 110 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-cccHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999995 8899999864
Q ss_pred -----ccccc------cHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcH----HHHHHHHHHHHHhhcchhh
Q 016078 244 -----SDSAY------LREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDK----EMENMVFFLAELGQMQYPT 308 (395)
Q Consensus 244 -----s~~~y------t~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~----~~~~la~~l~El~L~d~~~ 308 (395)
+++.| ++++|++||+.||++|+|++++|||+.||.+|++.. +.+. ++..+|+++++.++.++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l-~~~~~~~~~~~~~A~~l~~~s~~~~~~ 189 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQL-KGDKNKIQKLVQMAWTFVNDSLCTTLS 189 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTB-CSCHHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHHHcCCch
Confidence 45556 489999999999999999999999999999999983 3344 6889999999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHhCCC-CCchHH------HH-HhhCCCHHHHHHHHHHHHHHHhh
Q 016078 309 IVLYCPSMIAASAVYAARCTLNKN-PFWTET------LK-HHTGYSEDQLRNCAKLLVKFHSA 363 (395)
Q Consensus 309 ~~~~~PS~IAaaal~lA~~~l~~~-~~W~~~------L~-~~tg~s~~~L~~c~~~L~~~~~~ 363 (395)
+. |+||.||+|||++|...++.. +.|+.. .. .++|+++++|.+|++.|+.++..
T Consensus 190 l~-~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 190 LQ-WEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp GT-SCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSS
T ss_pred hc-cChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 99 999999999999999998753 344432 11 24799999999999999988754
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.6e-36 Score=300.54 Aligned_cols=203 Identities=19% Similarity=0.340 Sum_probs=178.3
Q ss_pred CcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhc-
Q 016078 166 PEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRIS- 244 (395)
Q Consensus 166 ~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is- 244 (395)
++....||..+++||.+|+.+|+|+++|+++|++|||||++.+.+.+.++|+||+||||||||+||+ ++.+.||+.++
T Consensus 31 ~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~ 109 (358)
T 2pk2_A 31 PDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999 88999998654
Q ss_pred -------------ccccc--HHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchh-h
Q 016078 245 -------------DSAYL--REQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYP-T 308 (395)
Q Consensus 245 -------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~-~ 308 (395)
++.|+ +++|++||+.||++|+|+|++|||+.||.+|++. +..+.++..+|+++++.+++++. +
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~-l~~~~~l~~~A~~ll~~sl~~t~l~ 188 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQL-VRASKDLAQTSYFMATNSLHLTTFS 188 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCcch
Confidence 55676 8999999999999999999999999999999998 45578899999999999996554 6
Q ss_pred hccCChHHHHHHHHHHHHHHhCCC-------CCchHHHHHhhCCCHHHHHHHHHHHHHHHhhccccchHHHHH
Q 016078 309 IVLYCPSMIAASAVYAARCTLNKN-------PFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYK 374 (395)
Q Consensus 309 ~~~~~PS~IAaaal~lA~~~l~~~-------~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~~~~~~~~v~~ 374 (395)
+. |+||.||+||||+|..+++.. ..|...+ .+++++++|.+|++.|+.++...+. +++.+..
T Consensus 189 l~-y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i~~ 257 (358)
T 2pk2_A 189 LQ-YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLKRIWN 257 (358)
T ss_dssp GT-SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHHHH
T ss_pred hc-cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccchhc
Confidence 77 999999999999999998731 3477654 4689999999999999999876554 5666554
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-35 Score=277.03 Aligned_cols=186 Identities=13% Similarity=0.210 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHhhccccccCCChhhHHHhccc-----
Q 016078 173 RSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQR-KELQLVGISAMLIACKYEEIWAPEVNDFVRISDS----- 246 (395)
Q Consensus 173 R~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~-~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~----- 246 (395)
|..+++||.+++..|+|+++|+++|++|||||++..++.+ .++|+||+||||||||+||. ++.+.||+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 7889999998875
Q ss_pred -cccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHH
Q 016078 247 -AYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAA 325 (395)
Q Consensus 247 -~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA 325 (395)
.+++++|++||+.||++|+|++.++||+.||.+|++. .+.+.++..+|+++++.++.++.++. |+||.||+|||++|
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~-~~~~~~~~~~A~~~l~~s~~~~~~l~-~~Ps~IAaAai~lA 184 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHD-GIINQKQLEFAWSIVNDSYASSLCLM-AHPHQLAYAALLIS 184 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTTTGGGT-SCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCchhc-cCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999997 45578899999999999999999999 99999999999999
Q ss_pred HHHhCCC-CCchHHHHHhhCCCHHHHHHHHHHHHHHHhhc
Q 016078 326 RCTLNKN-PFWTETLKHHTGYSEDQLRNCAKLLVKFHSAA 364 (395)
Q Consensus 326 ~~~l~~~-~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~ 364 (395)
...++.. |.|.+.++ |+++++|.+|++.|+.++...
T Consensus 185 ~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 185 CCNDENTIPKLLDLIK---STDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HTSCTTHHHHHHHHCC---HHHHHHHHHHHHHHHHHHTSS
T ss_pred HHhcCCCCCCCcchhh---cCCHHHHHHHHHHHHHHHhhC
Confidence 9887742 23555543 999999999999999998654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=5.1e-34 Score=281.40 Aligned_cols=206 Identities=15% Similarity=0.203 Sum_probs=183.5
Q ss_pred CHHhHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccc
Q 016078 169 NAKMRSILVDWLTEVHRKFE--LMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDS 246 (395)
Q Consensus 169 ~~~mR~~lvdWL~ev~~~f~--L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~ 246 (395)
...+|...++||.++|.+|+ |+++|+++|++|||||++..++.+.++|+||+||||||||+||+ ++++.+|+....+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~ 131 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRE 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhcc
Confidence 35689999999999999999 99999999999999999999999999999999999999999999 6789999876642
Q ss_pred -----cccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHh------cCCcHHHHHHHHHHHHHhhcchhhhccCChH
Q 016078 247 -----AYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKAS------VTSDKEMENMVFFLAELGQMQYPTIVLYCPS 315 (395)
Q Consensus 247 -----~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~------~~~~~~~~~la~~l~El~L~d~~~~~~~~PS 315 (395)
.|++++|++||+.||++|+|+++++||+.||.+|+... ......+..+|+++++.+++++.++. |+||
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~-~~Ps 210 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLL-YTPS 210 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHH-SCHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHc-CCHH
Confidence 47899999999999999999999999999999998652 23345788999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCC-CCchHHHHHh--hCCCHHHHHHHHHHHHHHHhh---ccccchHHHHHhh
Q 016078 316 MIAASAVYAARCTLNKN-PFWTETLKHH--TGYSEDQLRNCAKLLVKFHSA---AAESKLKAVYKKF 376 (395)
Q Consensus 316 ~IAaaal~lA~~~l~~~-~~W~~~L~~~--tg~s~~~L~~c~~~L~~~~~~---~~~~~~~~v~~KY 376 (395)
.||+||||+|...++.. +.|...+..+ ++++.++|.+|++.|..++.. ....+.++|++|.
T Consensus 211 ~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 211 QIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999999999999864 7899988776 889999999999999998876 2345578888883
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=1.1e-27 Score=221.34 Aligned_cols=185 Identities=15% Similarity=0.188 Sum_probs=171.4
Q ss_pred HhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccH
Q 016078 171 KMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLR 250 (395)
Q Consensus 171 ~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~ 250 (395)
+......+||.+++..|+|++.|+.+|+.||+||+..+.+...+.++|+++|||||||+||. |+++.|++.+++ ++.
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~ 79 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISK 79 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCH
Confidence 44667889999999999999999999999999999999999999999999999999999998 899999999887 899
Q ss_pred HHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhC
Q 016078 251 EQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLN 330 (395)
Q Consensus 251 ~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~ 330 (395)
.+|.++|+.||+.|+|++.+++|+.||.+|++. ++.+.++...|+++++.++.+.-+.. ++|+.||+||||+|...++
T Consensus 80 ~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~-l~l~~~~~~~A~~i~~~~~~~~l~~g-~~P~~IAaAaiylA~~~~~ 157 (207)
T 1c9b_A 80 KEIGRCFKLILKALETSVDLITTGDFMSRFCSN-LCLPKQVQMAATHIARKAVELDLVPG-RSPISVAAAAIYMASQASA 157 (207)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHTTCSTT-CCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCccCC-CChHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999988 55678899999999999988776677 9999999999999999887
Q ss_pred CCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 016078 331 KNPFWTETLKHHTGYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 331 ~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~ 361 (395)
. +.|...+..++|+++.+|.+|++.|....
T Consensus 158 ~-~~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 158 E-KRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp S-CCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred C-CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5 56888999999999999999999998654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.92 E-value=2.1e-23 Score=191.42 Aligned_cols=185 Identities=13% Similarity=0.132 Sum_probs=170.7
Q ss_pred HhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccH
Q 016078 171 KMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLR 250 (395)
Q Consensus 171 ~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~ 250 (395)
+......++|.+++..++|++.+...|..|++||+....+.....+.++++|||||||.|| .|.++.|+..+++ ++.
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~ 83 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDK 83 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCH
Confidence 3456889999999999999999999999999999999999999999999999999999999 5899999998876 789
Q ss_pred HHHHHHHHHHHHhcCccccc--cChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHH
Q 016078 251 EQVLAAEKAILRKLEWHLTV--PTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCT 328 (395)
Q Consensus 251 ~eIl~mE~~IL~~L~f~L~~--pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~ 328 (395)
.+|.++++.|++.|+|++.. ++|+.|+.+|... ++.+.++.+.|+++++.+..+.-+.+ ++|+.|||||||+|...
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~-L~l~~~v~~~A~~i~~~~~~~~~~~g-r~P~~iAaAaly~A~~~ 161 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADE-LGLSEKVRRRAIEILDEAYKRGLTSG-KSPAGLVAAALYIASLL 161 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHH-HTCCHHHHHHHHHHHHHHHHTTCCTT-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCcccC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999998 55678899999999999998777777 99999999999999988
Q ss_pred hCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 016078 329 LNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 329 l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~ 361 (395)
++. +.|...+..++|+++.+|..|++.|...+
T Consensus 162 ~~~-~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 162 EGE-KRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp TTC-CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 775 57999999999999999999999998765
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.8e-19 Score=179.06 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHH
Q 016078 173 RSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQ 252 (395)
Q Consensus 173 R~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~e 252 (395)
.......|..++..++|+..+.-.|..||.|++....+.....+.|+++|||||||.|+. |.++.|+..+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 456779999999999999999999999999999999999999999999999999998887 899999998876 78999
Q ss_pred HHHHHHHHHHhcC------------ccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHH
Q 016078 253 VLAAEKAILRKLE------------WHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAAS 320 (395)
Q Consensus 253 Il~mE~~IL~~L~------------f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaa 320 (395)
|.++++.|++.|+ |++.+++|+.|+.+|+.. ++.+.++...|++|++.+..+.-+.. ++|+.||||
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~-L~l~~~v~~~A~~i~~~~~~~~l~~G-r~P~~IAaA 280 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSH-LGLPMQVTTSAEYTAKKCKEIKEIAG-KSPITIAVV 280 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhchhcC-CCHHHHHHH
Confidence 9999999999999 999999999999999988 45578899999999999988776677 999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHH
Q 016078 321 AVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 321 al~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~ 361 (395)
|||+|..+++. +.|...+...+|+++..|+.+++.|..+.
T Consensus 281 aIylAa~~~~~-~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 281 SIYLNILLFQI-PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999988875 46888999999999999999999998765
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.39 E-value=5.3e-13 Score=132.42 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHH
Q 016078 174 SILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQV 253 (395)
Q Consensus 174 ~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 253 (395)
......|.+++..++|+..+.-.|..|+.+++....+.......++++|||||||.++. |.++.|+..+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 45667899999999999999999999999999999999999999999999999998775 888999988775 578999
Q ss_pred HHHHHHHHHhcCcc------------ccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHH
Q 016078 254 LAAEKAILRKLEWH------------LTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASA 321 (395)
Q Consensus 254 l~mE~~IL~~L~f~------------L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaa 321 (395)
.+..+.|++.|+.. +....|..|+.+|... ++.+.++...|..|++.+.-+.-... .+|+-|||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~-L~l~~~v~~~A~~i~~~~~~~~i~~G-R~P~~IAAAa 281 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSH-LGLPMQVTTSAEYTAKKCKEIKEIAG-KSPITIAVVS 281 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhcccccC-CChHHHHHHH
Confidence 99999999999864 6778999999999987 55677889999999988776554456 8999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 016078 322 VYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHS 362 (395)
Q Consensus 322 l~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~ 362 (395)
||+|....+.. .-...+...+|.++..|+..++.|.....
T Consensus 282 IylAa~l~g~~-~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 282 IYLNILLFQIP-ITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHhCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999877643 23456778899999999999998886643
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.33 E-value=3.1e-06 Score=81.43 Aligned_cols=106 Identities=9% Similarity=0.079 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc---cccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHH
Q 016078 175 ILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKE---TIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLRE 251 (395)
Q Consensus 175 ~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~---~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~ 251 (395)
.+-+||..+...-.++.+++..|..|+||+.... .+...+.+-+-++||.+|+|+-+-....-..+..+ +.++.+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gGisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GGVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HTSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cCcCHH
Confidence 3678999999999999999999999999998753 45667888999999999999977767777777777 447999
Q ss_pred HHHHHHHHHHHhcCccccccChHHHHHHHHHH
Q 016078 252 QVLAAEKAILRKLEWHLTVPTPYVFLVRYIKA 283 (395)
Q Consensus 252 eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~ 283 (395)
|+-.||+..|..|+|+|.++ +..|..+|+..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 99999999999999999765 55666666554
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.71 E-value=0.0064 Score=54.63 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHH
Q 016078 178 DWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAE 257 (395)
Q Consensus 178 dWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE 257 (395)
++|..++..++++.++.-.|..++.+.....-+......-++++|+++||+.... +.+..++..+++ .+...|...=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5677888999999999999999999999887788889999999999999998764 457888887766 5888999999
Q ss_pred HHHHHhcCccc
Q 016078 258 KAILRKLEWHL 268 (395)
Q Consensus 258 ~~IL~~L~f~L 268 (395)
+.+.+.|+..+
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998654
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.21 E-value=0.12 Score=46.35 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHH
Q 016078 273 PYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRN 352 (395)
Q Consensus 273 p~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~ 352 (395)
.+.++..+... ++..+.+...|..+....+....+-. +++-.+|+||||+|++.-+. |.-...+...++++..+|..
T Consensus 8 a~~~I~~~~~~-L~L~~~v~~~A~~~~~r~~~~~~~~~-~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~~~~~~i~~ 84 (207)
T 1c9b_A 8 AFKEITTMADR-INLPRNIVDRTNNLFKQVYEQKSLKG-RANDAIASACLYIACRQEGV-PRTFKEICAVSRISKKEIGR 84 (207)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTCSTT-SCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHCCCHHHHHH
Confidence 45677777766 45577888888888888776555555 99999999999999987765 55567788889999999999
Q ss_pred HHHHHHHHH
Q 016078 353 CAKLLVKFH 361 (395)
Q Consensus 353 c~~~L~~~~ 361 (395)
+.+.|++.+
T Consensus 85 ~~~~ll~~L 93 (207)
T 1c9b_A 85 CFKLILKAL 93 (207)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988887754
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=89.45 E-value=0.6 Score=42.75 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHH
Q 016078 178 DWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAE 257 (395)
Q Consensus 178 dWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE 257 (395)
++|......++++.++..+|.+++..-+....+-......||++|+++|++......| .+-.... .++.++|..+-
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~--~~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIP--KLLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHH--HHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCC--CCcchhh--cCCHHHHHHHH
Confidence 3455555678999999999999999877666677778889999999999998553222 1111222 67888888888
Q ss_pred HHHHHhcC
Q 016078 258 KAILRKLE 265 (395)
Q Consensus 258 ~~IL~~L~ 265 (395)
..|++..+
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887643
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.58 E-value=1.5 Score=40.50 Aligned_cols=87 Identities=10% Similarity=0.093 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHh-hcccccchhhHHHHHHHHHHhhccccccCCChh---hHHHhccccccHHHH
Q 016078 178 DWLTEVHRKFELMPETLYLTVHIVDRFL-SKETIQRKELQLVGISAMLIACKYEEIWAPEVN---DFVRISDSAYLREQV 253 (395)
Q Consensus 178 dWL~ev~~~f~L~~eTl~lAV~llDRfL-s~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~---dlv~is~~~yt~~eI 253 (395)
++|......++.+.++..+|.+++..-+ ....+-......||++|+++|++.-....|... ......+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4566667788889999999999885544 233355667889999999999998554333211 121222335789999
Q ss_pred HHHHHHHHHhc
Q 016078 254 LAAEKAILRKL 264 (395)
Q Consensus 254 l~mE~~IL~~L 264 (395)
..+-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 24
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=88.31 E-value=2.8 Score=40.92 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHH
Q 016078 272 TPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLR 351 (395)
Q Consensus 272 Tp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~ 351 (395)
..+..|..+... ++..+.+...|..+...++. ..++...+...+||||||+|++..+ .|.-...+...++.+..+|.
T Consensus 128 ~a~~~I~~~~~~-L~Lp~~v~d~A~~lyk~a~~-~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~v~~keig 204 (345)
T 4bbr_M 128 AAFAKITMLCDA-AELPKIVKDCAKEAYKLCHD-EKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTT-CTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHh-cCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhCCCHHHHH
Confidence 345556666655 45567888889998888665 4555448899999999999988665 45555677788999999999
Q ss_pred HHHHHHHHHH
Q 016078 352 NCAKLLVKFH 361 (395)
Q Consensus 352 ~c~~~L~~~~ 361 (395)
.+.+.|...+
T Consensus 205 r~~k~l~~~L 214 (345)
T 4bbr_M 205 KTLNIMKNIL 214 (345)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=87.17 E-value=1.6 Score=40.24 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCh----HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCCh------hhHHHhcccc
Q 016078 178 DWLTEVHRKFELMP----ETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEV------NDFVRISDSA 247 (395)
Q Consensus 178 dWL~ev~~~f~L~~----eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v------~dlv~is~~~ 247 (395)
++|......++... +...+|.++++.-+....+-......+|++|+++|++.-....|.. ...-......
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 57777788888887 5788899999887776667777888999999999999865422211 1111111235
Q ss_pred ccHHHHHHHHHHHHHhcC
Q 016078 248 YLREQVLAAEKAILRKLE 265 (395)
Q Consensus 248 yt~~eIl~mE~~IL~~L~ 265 (395)
++.++|..+-..|++..+
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 799999999999998765
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=87.10 E-value=4.2 Score=37.86 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHH
Q 016078 275 VFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTG--YSEDQLRN 352 (395)
Q Consensus 275 ~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg--~s~~~L~~ 352 (395)
+||...... +....+.-.+|-.+++..+....+-. ...-.+|+||+++|.+.-+..+.-...+...++ |+.++|..
T Consensus 43 ~wl~~v~~~-~~l~~~tl~lAv~~lDRfl~~~~v~~-~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~ 120 (269)
T 2b9r_A 43 DWLVQVQMK-FRLLQETMYMTVSIIDRFMQNNSVPK-KMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQ 120 (269)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHTTSCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCCcH-HHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHH
Confidence 344444443 34456777788888877766555444 778899999999999987764444556666774 89999999
Q ss_pred HHHHHHHHH
Q 016078 353 CAKLLVKFH 361 (395)
Q Consensus 353 c~~~L~~~~ 361 (395)
+-..|+..+
T Consensus 121 mE~~IL~~L 129 (269)
T 2b9r_A 121 MEMKILRAL 129 (269)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 887777654
No 27
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=83.88 E-value=7.2 Score=36.20 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHHH
Q 016078 288 DKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTG--YSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 288 ~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg--~s~~~L~~c~~~L~~~~ 361 (395)
..+.-.+|-.+++-.+.-..+-. ...-.+|+||+++|.+.-+..|.-...+...++ |+.++|..+-..|++.+
T Consensus 74 ~~~tl~lAv~~lDRfls~~~v~~-~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 74 EEEVFPLAMNYLDRFLSLEPVKK-SRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTSCCCT-TTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhCCcCCcCH-HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHC
Confidence 34444555555555554444444 778899999999999988764433455666654 89999998877776543
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.25 E-value=1.4 Score=43.26 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhh-cccccchhhHHHHHHHHHHhhccccccCCCh---hhHHHhccccccHHHH
Q 016078 178 DWLTEVHRKFELMPETLYLTVHIVDRFLS-KETIQRKELQLVGISAMLIACKYEEIWAPEV---NDFVRISDSAYLREQV 253 (395)
Q Consensus 178 dWL~ev~~~f~L~~eTl~lAV~llDRfLs-~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v---~dlv~is~~~yt~~eI 253 (395)
+||......++...++..+|.+++..-+. ..-+-......||++||++|+++-....|.. .......+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 35566667788888999999999866553 3334556778999999999999865433321 1121222335789999
Q ss_pred HHHHHHHHHhcC
Q 016078 254 LAAEKAILRKLE 265 (395)
Q Consensus 254 l~mE~~IL~~L~ 265 (395)
..+-..|++.++
T Consensus 235 ~~i~~~il~~y~ 246 (358)
T 2pk2_A 235 DELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=83.25 E-value=5 Score=37.08 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHHHH
Q 016078 286 TSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHT--GYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 286 ~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~t--g~s~~~L~~c~~~L~~~~ 361 (395)
....+.-.+|-.+++..+.-..+-. ...-.+|+||+++|.+.-+..+.-...+...+ .|+.++|..+-..|+..+
T Consensus 54 ~l~~~tl~lAv~~lDRfls~~~v~~-~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L 130 (260)
T 2cch_B 54 KLQNETLHLAVNYIDRFLSSMSVLR-GKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVL 130 (260)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhccCCCCH-HHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHc
Confidence 3445555666666655444333333 55678999999999998876444455666666 489999999877777654
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=82.62 E-value=6.5 Score=36.20 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHHH
Q 016078 286 TSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTG--YSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 286 ~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg--~s~~~L~~c~~~L~~~~ 361 (395)
....+.-.+|-.+++-.+.-...-. ...-.+|++|+++|.+.-+..+.-...+...++ |+.++|..+=..|++.+
T Consensus 66 ~l~~etl~lAv~~~DRfls~~~v~~-~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L 142 (257)
T 1g3n_C 66 NLEPNVVALALNLLDRLLLIKQVSK-EHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKL 142 (257)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCH-HHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 4456666677777776665444333 567789999999999987754433455666654 89999988777666543
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=81.80 E-value=1.3 Score=43.10 Aligned_cols=87 Identities=7% Similarity=-0.019 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHH
Q 016078 273 PYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRN 352 (395)
Q Consensus 273 p~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~ 352 (395)
.+.+|..+... +...+.+...|..|...++.. .++...+...+|+||||+|++..+ .|.-...+...++++..+|..
T Consensus 129 a~~~I~~~~~~-L~Lp~~v~d~A~~lyk~~~~~-~~~kgr~~~~vaaAclyiAcR~e~-~prtl~ei~~~~~v~~keIgr 205 (345)
T 3k7a_M 129 AFAKITMLCDA-AELPKIVKDCAKEAYKLCHDE-KTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp HHHHHHHHHHH-TTCCHHHHTHHHHHHHHHSSS-CSSCCCCSHHHHTTTTTTTSBTTB-SSCCHHHHHHSSSCCSHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhc-CcccCCcHHHHHHHHHHHHHHHcC-CCccHHHHHHHHCCCHHHHHH
Confidence 34566666655 455677788888888776554 444448899999999999987555 355566777889999999999
Q ss_pred HHHHHHHHHh
Q 016078 353 CAKLLVKFHS 362 (395)
Q Consensus 353 c~~~L~~~~~ 362 (395)
+.+.|.+.+.
T Consensus 206 ~~~~l~~~L~ 215 (345)
T 3k7a_M 206 TLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=81.69 E-value=7 Score=35.92 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=53.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHHH
Q 016078 285 VTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTG--YSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 285 ~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg--~s~~~L~~c~~~L~~~~ 361 (395)
+....+.-.+|-.+++-.+.-...-. ...-.+|++|+++|.+.-+..+.-...+...++ |+.++|..+=..|++.+
T Consensus 66 ~~l~~etl~lAv~~~DRfls~~~v~~-~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L 143 (254)
T 2f2c_A 66 FELDKSVFPLSVSILDRYLCKKQGTK-KTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEAL 143 (254)
T ss_dssp TTCCTTHHHHHHHHHHHHTTTSCCCT-TTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHT
T ss_pred HCCCchHHHHHHHHHHHHHccCCcCH-HHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 34456777788888887776555444 788899999999999987754433445555543 78999988877776544
No 33
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=81.58 E-value=11 Score=35.30 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh-----------
Q 016078 275 VFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHT----------- 343 (395)
Q Consensus 275 ~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~t----------- 343 (395)
+||...... +.....+..+|..+++-.+....+.. +.+-.||+|||++|.+.-+....-...+...+
T Consensus 48 ~~I~~v~~~-l~L~~~t~~tA~~~~~RF~~~~s~~~-~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 48 NVIQALGEH-LKLRQQVIATATVYFKRFYARYSLKS-IDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHSCTTT-SCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhCCchh-cCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 344444333 45567778888888887777666666 99999999999999987665321122332211
Q ss_pred -----CCCHHHHHHHHHHHHHHH
Q 016078 344 -----GYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 344 -----g~s~~~L~~c~~~L~~~~ 361 (395)
.++.++|..+=..|+..+
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHHHHHHHHc
Confidence 257788888777776543
No 34
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=80.72 E-value=6.8 Score=35.54 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc---cccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHH
Q 016078 175 ILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKE---TIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLRE 251 (395)
Q Consensus 175 ~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~---~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~ 251 (395)
.+.+.|..++.+-+++..++--||.+--.|.-.+ ...-++.|-|+++|++||+- +-..|..+.++.++ |.....-
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae-~~~~PiplaE~r~l-D~sL~Dv 91 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAE-EAQQPLPLAEVRCL-DSSLGDV 91 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHH-CTTCCCH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHH-HcCCCccHHHHHHH-hhhhhHH
Confidence 4566779999999999999999999999998654 44556789999999999996 33356677887654 4444433
Q ss_pred HHHHHHHHHHHhcCc
Q 016078 252 QVLAAEKAILRKLEW 266 (395)
Q Consensus 252 eIl~mE~~IL~~L~f 266 (395)
++.+. .|++.|+-
T Consensus 92 elrr~--Eiv~~l~l 104 (260)
T 3h4c_A 92 ELRRA--DIVRELHL 104 (260)
T ss_dssp HHHHH--HHHHHTTC
T ss_pred HHHHH--HHHHHccC
Confidence 33333 35566553
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=78.42 E-value=8.7 Score=36.57 Aligned_cols=73 Identities=19% Similarity=0.097 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhC--CCHHHHHHHHHHHHHHH
Q 016078 288 DKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTG--YSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 288 ~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg--~s~~~L~~c~~~L~~~~ 361 (395)
..++..+|-.+++.-+.-..+-. ...-.+|++|+++|.+.-...+.-...+..+++ |+.++|..+=..|+..+
T Consensus 88 ~~~t~~lAv~~lDRfls~~~v~~-~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L 162 (306)
T 3g33_B 88 EEEVFPLAMNYLDRYLSCVPTRK-AQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKL 162 (306)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCCG-GGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHc
Confidence 34444455555544443333334 678899999999999987654433445666665 78999988777766543
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=76.96 E-value=14 Score=34.63 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHHhhcc-hhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHHHH
Q 016078 287 SDKEMENMVFFLAELGQMQ-YPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHT--GYSEDQLRNCAKLLVKFH 361 (395)
Q Consensus 287 ~~~~~~~la~~l~El~L~d-~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~t--g~s~~~L~~c~~~L~~~~ 361 (395)
...+.-.+|-.+++-.+.- ...-. ...-.+|++|+++|.+.-+..+.-...+...+ .|+.++|..+-..|+..+
T Consensus 66 l~~~tl~lAv~~lDRfls~~~~v~~-~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 66 LHRETFYLAQDFFDRYMATQENVVK-TLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp CBHHHHHHHHHHHHHHHHHCCCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 3445555555555554432 12223 67889999999999998876444445566666 489999999877777654
No 37
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=70.53 E-value=32 Score=32.86 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCC-------
Q 016078 276 FLVRYIKASVT--SDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYS------- 346 (395)
Q Consensus 276 FL~~fl~~~~~--~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s------- 346 (395)
||..+... +. ....+..+|..+++-.++...+.. +.|-.||+||||+|.+.-+... -...+...+.-+
T Consensus 63 ~I~ev~~~-l~~~Lp~~t~~tA~~~~~RF~~~~s~~~-~~~~lva~acLfLA~K~EE~~~-~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 63 RLLEFCSV-FKPAMPRSVVGTACMYFKRFYLNNSVME-YHPRIIMLTCAFLACKVDEFNV-SSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHHHH-CTTTCCHHHHHHHHHHHHHHGGGSCTTT-SCHHHHHHHHHHHHHHHTTCCC-CHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHHHHHhhhCChhh-cCHHHHHHHHHHHHHhhhcCCC-CHHHHHHHhccChhhhHHH
Confidence 34444443 33 567777888888888777777666 9999999999999998776532 233333333222
Q ss_pred HHHHHHHHHHHHHH
Q 016078 347 EDQLRNCAKLLVKF 360 (395)
Q Consensus 347 ~~~L~~c~~~L~~~ 360 (395)
.++|..+=..|+..
T Consensus 140 ~~~Il~~E~~iL~~ 153 (323)
T 1jkw_A 140 LEQILEYELLLIQQ 153 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46666665555543
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=66.86 E-value=36 Score=32.34 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=63.5
Q ss_pred cChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc-chhh-hccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHH
Q 016078 271 PTPYVFLVRYIKASVTSDKEMENMVFFLAELGQM-QYPT-IVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSED 348 (395)
Q Consensus 271 pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~-d~~~-~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~ 348 (395)
++-+.|+.++.+... .+....-++.++++.... ...+ +......-|-.+|+.+|.+.++....|+.....+.|++..
T Consensus 75 ISI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ 153 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCH 153 (293)
T ss_dssp SCHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHH
T ss_pred CcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHH
Confidence 356788988888743 355555555555543222 2222 2226788899999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016078 349 QLRNCAKLLVKFH 361 (395)
Q Consensus 349 ~L~~c~~~L~~~~ 361 (395)
+|...=..++.++
T Consensus 154 ELN~LE~eFL~lL 166 (293)
T 2pmi_B 154 ELNILENDFLKRV 166 (293)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Confidence 9888766666543
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=58.96 E-value=53 Score=30.17 Aligned_cols=72 Identities=14% Similarity=-0.059 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhh--CCCHHHHHHHHHHHHHH
Q 016078 288 DKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHT--GYSEDQLRNCAKLLVKF 360 (395)
Q Consensus 288 ~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~t--g~s~~~L~~c~~~L~~~ 360 (395)
..++-.+|-.+++.-+.-...-. ...-.+|++|+++|.+.-...|.-...+..++ .|+.++|...=..++..
T Consensus 66 ~~eT~~lAv~~lDRfLs~~~v~~-~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~ 139 (252)
T 1f5q_B 66 DNNVFPLAVALLDELFLSTRIDR-ENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDT 139 (252)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCG-GGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 34444455545544333222223 55678999999999998776544345555555 47889988765555543
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=35.78 E-value=27 Score=30.20 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=38.4
Q ss_pred cCCChHHHH---HHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHH
Q 016078 187 FELMPETLY---LTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQV 253 (395)
Q Consensus 187 f~L~~eTl~---lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 253 (395)
+++.++++| +|-+|||- -.|+-++|-.+|.++....|-.+..+..|.+. ||.++-
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd-~t~eEe 156 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND-FTPEEE 156 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCC-CCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCC-CCHHHH
Confidence 467777765 35555543 35788999999998877766667777777644 888763
No 41
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=33.32 E-value=33 Score=29.22 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHH
Q 016078 215 LQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQV 253 (395)
Q Consensus 215 lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 253 (395)
-.|+-++|-++|..+....+-.+..+..|.+ -||.++-
T Consensus 111 ~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n-d~t~eEe 148 (160)
T 2p1m_A 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIKN-DFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC-CCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 3588899999999987765555666666654 4887653
No 42
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=32.90 E-value=35 Score=28.93 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCChHHHH---HHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHH
Q 016078 188 ELMPETLY---LTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQV 253 (395)
Q Consensus 188 ~L~~eTl~---lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 253 (395)
++..++++ +|-+|||- -.|+-++|-++|..+....+-.+..+..|.+ -||.++-
T Consensus 93 ~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~-d~t~eEe 149 (159)
T 2ast_A 93 KVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKN-DFTEEEE 149 (159)
T ss_dssp CSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCC-CSCTTHH
T ss_pred cCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHH
Confidence 67777664 34444442 3578899999999988776656677766653 4777654
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=31.30 E-value=1.5e+02 Score=23.22 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 016078 312 YCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHS 362 (395)
Q Consensus 312 ~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~ 362 (395)
+.--.-+++|+|.+++.+..... ..-|-..+|.+..++..+...+-++..
T Consensus 43 ~s~P~f~aaA~~~acr~~K~kVd-K~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 43 LSRPLFTSAALLSACKILKLKVD-KNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp TTSHHHHHHHHHHHHHHTTCCCC-HHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHccCCC-HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 55556788899999888775432 456888999999999999888877753
No 44
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=28.33 E-value=1.1e+02 Score=28.98 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=44.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhc----ccccchhhHHHHHHHHHHhhccccccCCChhhHHHhcc
Q 016078 180 LTEVHRKFELMPETLYLTVHIVDRFLSK----ETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISD 245 (395)
Q Consensus 180 L~ev~~~f~L~~eTl~lAV~llDRfLs~----~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~ 245 (395)
..++|..++++..|.--|..++.+.-+. .....+ -+..-.+|||+|+.-.|....++.+++..++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4678999999999999999999996553 122333 3333344599999876766777777766553
No 45
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=27.59 E-value=43 Score=28.17 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHhhc------ccccchhhHHHHHHHHHHhhcc--ccccCCChhhH
Q 016078 174 SILVDWLTEVHRKF---ELMPETLYLTVHIVDRFLSK------ETIQRKELQLVGISAMLIACKY--EEIWAPEVNDF 240 (395)
Q Consensus 174 ~~lvdWL~ev~~~f---~L~~eTl~lAV~llDRfLs~------~~v~~~~lqLvgitcL~IAsK~--EE~~~p~v~dl 240 (395)
..+|-|+..|-+.+ |.+...+..--|++=-||.. ..-...++|-+-.|||++|--| .|+..| ++-|
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYP-LKPF 104 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP-LKPF 104 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGG
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhccccccc-Ccch
Confidence 47888888888765 44444333333333333332 2234568999999999999888 677555 4444
No 46
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=27.18 E-value=42 Score=29.55 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHc---CCChHHHHHHHHHHHHHhhc------ccccchhhHHHHHHHHHHhhcc--ccccCCChhhH
Q 016078 174 SILVDWLTEVHRKF---ELMPETLYLTVHIVDRFLSK------ETIQRKELQLVGISAMLIACKY--EEIWAPEVNDF 240 (395)
Q Consensus 174 ~~lvdWL~ev~~~f---~L~~eTl~lAV~llDRfLs~------~~v~~~~lqLvgitcL~IAsK~--EE~~~p~v~dl 240 (395)
..+|-||..|-+.+ |..+..+..--|++=-||.. ..-...+||-+-+|||+||--| .|+..| ++-|
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te~eLqa~vLTCLYlsYSYmGNEISYP-LKPF 149 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP-LKPF 149 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCCC-SGGG
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHhhCcccccc-Ccce
Confidence 46788888887765 44444333322333233322 2334568999999999999888 677555 4444
No 47
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=23.35 E-value=2.7e+02 Score=21.79 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=51.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhcc------cccchhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHH
Q 016078 180 LTEVHRKFELMPETLYLTVHIVDRFLSKE------TIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQV 253 (395)
Q Consensus 180 L~ev~~~f~L~~eTl~lAV~llDRfLs~~------~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eI 253 (395)
+.++|..|++.. ..-.|-.++++|=..- .++-.+ -...++|+|.|||.--..+. -..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~-P~f~aaA~~~acr~~K~kVd-K~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR-PLFTSAALLSACKILKLKVD-KNKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS-HHHHHHHHHHHHHHTTCCCC-HHHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc-cHHHHHHHHHHHHHHccCCC-HHHHHHHHC--CCHHHH
Confidence 457788888766 7778889999997542 222233 35667899999998777654 334555554 356666
Q ss_pred HHHHHHHHH
Q 016078 254 LAAEKAILR 262 (395)
Q Consensus 254 l~mE~~IL~ 262 (395)
-..|..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
No 48
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=22.79 E-value=59 Score=26.96 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=29.7
Q ss_pred cCCChHHHH---HHHHHHHHHhhcccccchhhHHHHHHHHHHhhccccccCCChhhHHHh
Q 016078 187 FELMPETLY---LTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRI 243 (395)
Q Consensus 187 f~L~~eTl~---lAV~llDRfLs~~~v~~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~i 243 (395)
+++.+++++ +|-+|||- -.|+-++|-++|..+....+-.++.+..|
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f~I 135 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNI 135 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHTC-
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHcCC
Confidence 467888775 45555553 35788899999998866544445544443
Done!