Query 016080
Match_columns 395
No_of_seqs 154 out of 253
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 58.7 17 0.00058 27.1 5.0 37 19-56 5-41 (54)
2 2knc_A Integrin alpha-IIB; tra 56.6 24 0.00081 26.2 5.5 37 19-56 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 53.7 19 0.00064 25.4 4.3 36 19-55 6-41 (42)
4 2uwj_E Type III export protein 20.7 33 0.0011 26.8 1.1 33 40-72 8-40 (70)
5 2knc_B Integrin beta-3; transm 19.9 2.1E+02 0.0071 22.3 5.7 24 179-202 34-57 (79)
6 1zke_A Hypothetical protein HP 13.8 26 0.00089 27.9 -1.0 18 57-74 65-82 (83)
7 1rh4_A Right-handed coiled coi 13.4 74 0.0025 21.1 1.3 15 56-70 19-33 (35)
8 2jwa_A Receptor tyrosine-prote 13.4 1.8E+02 0.006 20.7 3.3 30 23-57 12-41 (44)
9 1wy3_A Villin; structural prot 11.3 53 0.0018 22.2 0.1 13 281-293 3-15 (35)
10 1und_A Advillin, P92; actin bi 11.1 55 0.0019 22.4 0.1 13 281-293 5-17 (37)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=58.65 E-value=17 Score=27.06 Aligned_cols=37 Identities=5% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCC
Q 016080 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNR 56 (395)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 56 (395)
+..|.|.+.+-...-+++-.++=-++-++| +|||+++
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~~ 41 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPLK 41 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCS
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCc
Confidence 468999654333333333345556777887 6777654
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.64 E-value=24 Score=26.23 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCC
Q 016080 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNR 56 (395)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 56 (395)
+..|.|.+.+-...-+++-.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 468999755444444444455667788887 6777654
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=53.68 E-value=19 Score=25.41 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcC
Q 016080 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTN 55 (395)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 55 (395)
+..|.|.+.+-...-+++-.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 468999755444444444455566777887 566543
No 4
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=20.70 E-value=33 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHhhcCCchHHHHHHHHHHHHHH
Q 016080 40 VERSIHHLSNWLRKTNRKPLLAAVEKMKEEMML 72 (395)
Q Consensus 40 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELML 72 (395)
+|..|+-.+.-..++=+--|..||.++|++|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555544333343345599999999999985
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.86 E-value=2.1e+02 Score=22.32 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=15.8
Q ss_pred HHHHHHHhhcHHHHHHHHhccccc
Q 016080 179 MLLAIVKIHSWRVWEEEAHMDRHD 202 (395)
Q Consensus 179 m~Lg~~Kir~Wk~WE~e~~~~~~~ 202 (395)
++.....-|.++++|+|-++...+
T Consensus 34 ~~~~i~DrrE~~kFEkE~~~~~w~ 57 (79)
T 2knc_B 34 LLITIHDRKEFAKFEEERARAKWD 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 333333468899999997765544
No 6
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=13.78 E-value=26 Score=27.94 Aligned_cols=18 Identities=33% Similarity=0.733 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHH
Q 016080 57 KPLLAAVEKMKEEMMLLG 74 (395)
Q Consensus 57 kaL~eALeKiK~ELMLLG 74 (395)
|...+||.|+|+|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 568999999999986544
No 7
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=13.42 E-value=74 Score=21.13 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=11.6
Q ss_pred CchHHHHHHHHHHHH
Q 016080 56 RKPLLAAVEKMKEEM 70 (395)
Q Consensus 56 kkaL~eALeKiK~EL 70 (395)
|-....||.|+|.|.
T Consensus 19 kaeilaalkkikqei 33 (35)
T 1rh4_A 19 KAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456788888888885
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.36 E-value=1.8e+02 Score=20.66 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCCc
Q 016080 23 TWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRK 57 (395)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 57 (395)
|++.|.|..+++++-+.+ -++=|++||+++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 456666655443322222 234466776653
No 9
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=11.34 E-value=53 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=11.1
Q ss_pred Hhhcchhcccchh
Q 016080 281 EEEFQRIVGVSGP 293 (395)
Q Consensus 281 E~DFk~VVGIS~~ 293 (395)
++||+.|.|+|..
T Consensus 3 d~dF~~vFgmsr~ 15 (35)
T 1wy3_A 3 DEDFKAVFGMTRS 15 (35)
T ss_dssp HHHHHHHHSSCHH
T ss_pred HHHHHHHHCCCHH
Confidence 6899999999863
No 10
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=11.06 E-value=55 Score=22.38 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=11.1
Q ss_pred Hhhcchhcccchh
Q 016080 281 EEEFQRIVGVSGP 293 (395)
Q Consensus 281 E~DFk~VVGIS~~ 293 (395)
++||..|.|+|.-
T Consensus 5 d~dF~~vFgmsr~ 17 (37)
T 1und_A 5 EQDFVSVFGITRG 17 (37)
T ss_dssp HHHHHHHHSSCHH
T ss_pred HHHHHHHHCcCHH
Confidence 6899999999863
Done!