BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016083
         (395 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
          Length = 184

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 123 ENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRIS---MLDAEK-R 178
           ENL+   F G E +  +  + SS K   V RY  G  ++ E    GR     ++D +   
Sbjct: 12  ENLY---FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYL 68

Query: 179 LLAHALLDPDNQQFVLLSDSCIPLH------NFDYVYNYLM 213
           LL      P   QF    D+ + +       +F  VYNY +
Sbjct: 69  LLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYFL 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,036,788
Number of Sequences: 62578
Number of extensions: 572458
Number of successful extensions: 1262
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 2
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)