Query 016083
Match_columns 395
No_of_seqs 275 out of 633
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02485 Branch: Core-2/I-Bran 100.0 7.8E-46 1.7E-50 351.9 12.5 223 110-339 1-243 (244)
2 PLN03183 acetylglucosaminyltra 100.0 2E-43 4.3E-48 359.6 25.3 240 104-391 74-362 (421)
3 KOG0799 Branching enzyme [Carb 99.9 7.1E-24 1.5E-28 218.6 12.5 214 109-331 104-350 (439)
4 PF11337 DUF3139: Protein of u 26.2 53 0.0012 26.4 2.2 8 81-88 47-54 (85)
5 PF12273 RCR: Chitin synthesis 22.9 38 0.00081 29.4 0.8 9 33-41 2-10 (130)
6 PF03032 Brevenin: Brevenin/es 22.6 40 0.00086 24.5 0.7 18 27-44 2-19 (46)
7 PF14812 PBP1_TM: Transmembran 22.1 9.9 0.00021 30.9 -2.7 19 27-45 61-79 (81)
8 cd02515 Glyco_transf_6 Glycosy 22.0 6E+02 0.013 25.3 9.0 112 73-197 9-132 (271)
9 PF13396 PLDc_N: Phospholipase 18.5 1.4E+02 0.0031 20.8 2.9 28 24-51 16-43 (46)
10 COG4459 NapE Periplasmic nitra 17.7 1.3E+02 0.0029 22.9 2.6 21 24-44 12-32 (62)
No 1
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=7.8e-46 Score=351.86 Aligned_cols=223 Identities=28% Similarity=0.467 Sum_probs=146.0
Q ss_pred EEEEEEcCC-CCChHHHHHHHhhccCCCceEEEEeCCCCCC------Cc--cceeeeeccC-CCccccCcchHHHHHHHH
Q 016083 110 VAFMFLTPG-NLPFENLWEKFFHGHEDRFSVYVHASSEKPM------HV--SRYFVGRDIR-SEKVAWGRISMLDAEKRL 179 (395)
Q Consensus 110 iAfLfLt~~-~l~l~~Lwe~ff~~~~~~~sIYVHvD~k~~~------~~--s~vF~~r~Ip-s~~V~WG~~SlV~AelrL 179 (395)
||||||+|+ +.++..+|.+++ +++.+.+|||+|+|++. .. ......+.++ +++|.||++|||+||++|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l--~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLL--YHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHh--cCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence 799999976 766544555554 35677888999999652 10 1111122344 689999999999999999
Q ss_pred HHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CccceeeccCCCCCCCCCcccc----cCccccccccccccc
Q 016083 180 LAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYT--NVSYVDCFEDPGPHGNGRYSEH----MLPEVEKKDFRKGSQ 252 (395)
Q Consensus 180 L~~AL~-d~~n~yfvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~p~p~~~~Ry~~~----mlp~i~~~~~rkGSQ 252 (395)
|++|++ +++|+|||||||+|+||+++++|++||+.. +.+|+++...+++...+||... +.+.++..++++|||
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSq 158 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQ 158 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S
T ss_pred HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccce
Confidence 999999 789999999999999999999999999885 5788999877654333566543 233444458999999
Q ss_pred eeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhccc--CCCCCCCCceEEEeCC-CCCCCCcccccC
Q 016083 253 WFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWS-EGKWHPKAYRAQ 329 (395)
Q Consensus 253 WfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~--~~~~i~n~~lryIDWs-~g~~hP~~~~~~ 329 (395)
||+|||++|++|++|....+.|+.+|+ ++++|||+||||||.+. ..+.+.|+++|||||+ +|++||++++..
T Consensus 159 W~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~ 233 (244)
T PF02485_consen 159 WFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTIC 233 (244)
T ss_dssp --EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEE
T ss_pred eeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeee
Confidence 999999999999999998889998885 47999999999999876 4578899999999999 788999999999
Q ss_pred CCCHHHHHHH
Q 016083 330 DISSEFLKSL 339 (395)
Q Consensus 330 Di~~e~L~~i 339 (395)
|++.+.|..|
T Consensus 234 ~~~~~d~~~~ 243 (244)
T PF02485_consen 234 DLGPEDLPWL 243 (244)
T ss_dssp E--GGGHHHH
T ss_pred eeCHHHHHhh
Confidence 9998877765
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2e-43 Score=359.62 Aligned_cols=240 Identities=20% Similarity=0.275 Sum_probs=181.4
Q ss_pred CCCCCcEEEEEEcC-CC-CChHHHHHHHhhccCCCceEEEEeCCCCCCC-----------------ccceee-eeccCCC
Q 016083 104 HSKNPKVAFMFLTP-GN-LPFENLWEKFFHGHEDRFSVYVHASSEKPMH-----------------VSRYFV-GRDIRSE 163 (395)
Q Consensus 104 ~~~~~KiAfLfLt~-~~-l~l~~Lwe~ff~~~~~~~sIYVHvD~k~~~~-----------------~s~vF~-~r~Ips~ 163 (395)
...+||+||||++| |+ .++++|...+ +++++.+|||+|+|++.. .++++. ++ +.
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k---~~ 147 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITK---AN 147 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEec---ce
Confidence 34689999999997 66 5688888776 578889999999998631 123433 22 36
Q ss_pred ccccCcchHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHH-HHHHHhc-CCccceeeccCCCCCCCCCccc----
Q 016083 164 KVAWGRISMLDAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDY-VYNYLMY-TNVSYVDCFEDPGPHGNGRYSE---- 236 (395)
Q Consensus 164 ~V~WG~~SlV~AelrLL~~AL~-d~~n~yfvLLSgsdiPL~s~~~-I~~~L~~-~~~sFIe~~~~p~p~~~~Ry~~---- 236 (395)
.|.|||+|||+||+++|+.+|+ ..+|+|||||||+|+||+++++ |+.|+.. .+++||++....+.....|+..
T Consensus 148 ~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~ 227 (421)
T PLN03183 148 LVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIID 227 (421)
T ss_pred eeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEec
Confidence 7999999999999999999998 5789999999999999999999 5677765 7899999875322211112110
Q ss_pred ---------cc---Cc--ccc-ccccccccceeeecHHHHHHHHh--C--hHHHHHHHhhccCCCCCCccccCccchhhh
Q 016083 237 ---------HM---LP--EVE-KKDFRKGSQWFTLKRQHAMIIMA--D--SLYYTKFKHYCKPNMEGRNCYADEHYLPTL 297 (395)
Q Consensus 237 ---------~m---lp--~i~-~~~~rkGSQWfsLtR~~a~~Iv~--d--~~~~~~F~~~c~~~~~~~tc~pDE~yf~Tl 297 (395)
.+ .+ .+| ..++++|||||+|||++|+||+. | +.....|.+ .+++|||+||||+
T Consensus 228 pgl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~--------~t~~pdE~fFqTV 299 (421)
T PLN03183 228 PGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT--------NFVSSPEGYFHTV 299 (421)
T ss_pred CceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh--------cCCCCchHHHHHH
Confidence 00 01 123 46899999999999999999995 3 334445554 3578999999999
Q ss_pred hccc--CCCCCCCCceEEEeCCCC-CCCCcccccCCCCHHHHHHHhhccccccccccccccccccccccCCCCCCcceEE
Q 016083 298 FHMI--DPAGIANWSVTHADWSEG-KWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFA 374 (395)
Q Consensus 298 L~~~--~~~~i~n~~lryIDWs~g-~~hP~~~~~~Di~~e~L~~ir~~~~~~~~~~~~~~~~~~~~c~yng~~~~c~LFA 374 (395)
|.+. ..+++.|.++|||||+++ +.||++|+.+|++ +|.+ +.++||
T Consensus 300 l~NS~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D~~-----~l~~---------------------------S~~lFA 347 (421)
T PLN03183 300 ICNVPEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDTE-----KMIA---------------------------SGAAFA 347 (421)
T ss_pred HhhcccccccccCCceeEEecCCCCCCCCcccCHHHHH-----HHHh---------------------------CCCccc
Confidence 9775 457888999999999976 4599999999974 4544 258999
Q ss_pred ecCCcchHHHHHHhhhh
Q 016083 375 RKFNPEALDKLVFLFVN 391 (395)
Q Consensus 375 RKF~~~~~~~Ll~l~~~ 391 (395)
|||+.+ +++++.++.
T Consensus 348 RKFd~d--~~vl~~Id~ 362 (421)
T PLN03183 348 RKFRRD--DPVLDKIDK 362 (421)
T ss_pred cCCCCC--hHHHHHHHH
Confidence 999974 566666654
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.90 E-value=7.1e-24 Score=218.59 Aligned_cols=214 Identities=20% Similarity=0.255 Sum_probs=151.6
Q ss_pred cEEEEEEcCCCCChHHHHHHHhhcc-CCCceEEEEeCCCCCC-------CccceeeeeccC--CCccccCcchHHHHHHH
Q 016083 109 KVAFMFLTPGNLPFENLWEKFFHGH-EDRFSVYVHASSEKPM-------HVSRYFVGRDIR--SEKVAWGRISMLDAEKR 178 (395)
Q Consensus 109 KiAfLfLt~~~l~l~~Lwe~ff~~~-~~~~sIYVHvD~k~~~-------~~s~vF~~r~Ip--s~~V~WG~~SlV~Aelr 178 (395)
=+||+.+++|+.. ..+++++.. .+.+-.+||+|.+++. +-.++|.|..|. +..|.|||.|++.|.++
T Consensus 104 ~~a~~~~v~kd~~---~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~ 180 (439)
T KOG0799|consen 104 PAAFLRVVYKDYE---QVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLN 180 (439)
T ss_pred ceEEEEeecccHH---HHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHH
Confidence 3667777788853 224444443 4455556999999873 234556655554 36899999999999999
Q ss_pred HHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceeeccCCCCC--CCCC-------ccc---cc-Ccccc
Q 016083 179 LLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPH--GNGR-------YSE---HM-LPEVE 243 (395)
Q Consensus 179 LL~~AL~d-~~n~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~p~p~--~~~R-------y~~---~m-lp~i~ 243 (395)
+|+.+++- .+|+||++|||+|+||+++.++.+.|.. +|.+||+.....+.. +... |-. .+ .+-+|
T Consensus 181 c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp 260 (439)
T KOG0799|consen 181 CLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILP 260 (439)
T ss_pred HHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCC
Confidence 99999985 5799999999999999999999999988 999999986543211 0111 110 01 11123
Q ss_pred -ccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhcccCCCCCCCCc--eEEEeCCCC-
Q 016083 244 -KKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWS--VTHADWSEG- 319 (395)
Q Consensus 244 -~~~~rkGSQWfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~~~~~i~n~~--lryIDWs~g- 319 (395)
...+++||.|++|+|.+|+|++.+... ..+..+.+ ++..|||+||+|++.+.....-.+.+ +|++.|..+
T Consensus 261 ~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~~-----~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~ 334 (439)
T KOG0799|consen 261 TALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYYN-----NTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKD 334 (439)
T ss_pred CceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHHh-----CccCcchhhhHhhhccccCCCCcccchhhcceeccccc
Confidence 467899999999999999999987443 34444433 47899999999999887332223344 999999862
Q ss_pred ----CCCCcccccCCC
Q 016083 320 ----KWHPKAYRAQDI 331 (395)
Q Consensus 320 ----~~hP~~~~~~Di 331 (395)
+.||+.++..|.
T Consensus 335 ~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 335 VDPPKQHCHSLTVRDF 350 (439)
T ss_pred ccccccCCcccccccc
Confidence 346777666654
No 4
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.20 E-value=53 Score=26.37 Aligned_cols=8 Identities=0% Similarity=0.189 Sum_probs=4.8
Q ss_pred CCCChHHH
Q 016083 81 RELTDAEN 88 (395)
Q Consensus 81 ~~~~d~e~ 88 (395)
...+++++
T Consensus 47 ~gy~e~~I 54 (85)
T PF11337_consen 47 QGYKESDI 54 (85)
T ss_pred cCCcHHHh
Confidence 45666666
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.88 E-value=38 Score=29.37 Aligned_cols=9 Identities=11% Similarity=0.707 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 016083 33 WIIAFVTFF 41 (395)
Q Consensus 33 ~~~~~~~~~ 41 (395)
|+++++.++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 444444333
No 6
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.61 E-value=40 Score=24.51 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=12.3
Q ss_pred CCCCchhHHHHHHHHHHH
Q 016083 27 HLKRPIWIIAFVTFFIIF 44 (395)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (395)
.+||++..++++.+|+++
T Consensus 2 tlKKsllLlfflG~ISlS 19 (46)
T PF03032_consen 2 TLKKSLLLLFFLGTISLS 19 (46)
T ss_pred cchHHHHHHHHHHHcccc
Confidence 467777777777776554
No 7
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=22.07 E-value=9.9 Score=30.90 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=5.5
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 016083 27 HLKRPIWIIAFVTFFIIFL 45 (395)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (395)
+.||..|+.+|+.+.+||+
T Consensus 61 ~rkKrrwlwLlikl~lV~a 79 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLVFA 79 (81)
T ss_dssp ----------TTTTHCCHC
T ss_pred ccccchhHHHHHHHHHHhe
Confidence 5677788888777665543
No 8
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=22.01 E-value=6e+02 Score=25.30 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=69.1
Q ss_pred ccCCCCCCCCCChHHHHhhhhhhhhccCCCCCCCCCcEEEEEEcCCCCChHHHHHHHhhccC------CCceEEEEeCCC
Q 016083 73 EQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHE------DRFSVYVHASSE 146 (395)
Q Consensus 73 ~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~KiAfLfLt~~~l~l~~Lwe~ff~~~~------~~~sIYVHvD~k 146 (395)
.|+.+......-|.+++..-- .+.++|||.+..+-|.-. ..|+.|++..+ ..-..||=+|..
T Consensus 9 ~W~APivwegtf~~~~l~~~y----------~~~n~tIgl~vfatGkY~--~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~ 76 (271)
T cd02515 9 PWLAPIVWEGTFNPDVLDEYY----------RKQNITIGLTVFAVGKYT--EFLERFLESAEKHFMVGYRVIYYIFTDKP 76 (271)
T ss_pred CccCceeecCcCCHHHHHHHH----------HhcCCEEEEEEEEeccHH--HHHHHHHHHHHHhccCCCeeEEEEEeCCc
Confidence 788667777888888877632 468999999999988754 38888886432 234678999976
Q ss_pred CCCCc-----cceeeeeccCCCccccCcchHHHHHHHHHHHH-hcCCCCCEEEEecC
Q 016083 147 KPMHV-----SRYFVGRDIRSEKVAWGRISMLDAEKRLLAHA-LLDPDNQQFVLLSD 197 (395)
Q Consensus 147 ~~~~~-----s~vF~~r~Ips~~V~WG~~SlV~AelrLL~~A-L~d~~n~yfvLLSg 197 (395)
..++. ..-+..-.|+ ..-.|-..||..-+.-+-... +.-...||...+..
T Consensus 77 ~~~p~v~lg~~r~~~V~~v~-~~~~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dv 132 (271)
T cd02515 77 AAVPEVELGPGRRLTVLKIA-EESRWQDISMRRMKTLADHIADRIGHEVDYLFCMDV 132 (271)
T ss_pred ccCcccccCCCceeEEEEec-cccCCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeC
Confidence 54321 1112211222 246899999977655443221 11134566655443
No 9
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=18.48 E-value=1.4e+02 Score=20.76 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=19.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhcccc
Q 016083 24 QRPHLKRPIWIIAFVTFFIIFLTGVYVY 51 (395)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (395)
.|.+..|-.|+++++.++.+-.+.=+++
T Consensus 16 ~~~~~~k~~W~~~i~~~P~iG~i~Yl~~ 43 (46)
T PF13396_consen 16 DRSPSSKILWLIVILFFPIIGPILYLIF 43 (46)
T ss_pred CCCCchhhHHHHHHHHHHHHHHhheEEE
Confidence 3566778999999998887665544433
No 10
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=17.66 E-value=1.3e+02 Score=22.93 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=15.1
Q ss_pred CCCCCCCchhHHHHHHHHHHH
Q 016083 24 QRPHLKRPIWIIAFVTFFIIF 44 (395)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~ 44 (395)
-.++.||--||.+|+..++++
T Consensus 12 v~~~~~r~e~itFl~la~~l~ 32 (62)
T COG4459 12 VKPSEKRSEWITFLFLAFGLF 32 (62)
T ss_pred CCcchhhhHHHHHHHHHHHHH
Confidence 455566668999988877655
Done!