BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016084
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
Length = 498
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 47/192 (24%)
Query: 21 IISSQPLDFDNLHKSHHKI---------QGPIKTVVVLIMENRSFDHILGWL-------- 63
+ +S+P D+ L K K+ PIK VV++ EN SFD G
Sbjct: 3 VNNSKPNDYGTLVKIEQKLFNNANTLKTTTPIKHVVIIFQENNSFDRYFGMYPNAKNPEG 62
Query: 64 ------KSTRPDIDGLTGK--ESNSVNISDPKSPKVFVSDDAIFVDSDPGHSFQAIREQI 115
K P+++GLT + E+N P + + D +FQ +
Sbjct: 63 EPKFVAKENTPNVNGLTKQLLENN------PNTKNPYRLD----------RNFQPCSQNH 106
Query: 116 FGSNVISPNSAPMMNGFVQQAMSMDPDMAR-----TVMSGFKPEVIPIYTELANEFAVFD 170
IS + +MN FV+ D D + VM + + A FA+ D
Sbjct: 107 EYHQEISSFNGGLMNKFVEHG-GHDNDTYKQNCDGQVMGYYDGNTVTALWNYAQNFALND 165
Query: 171 RWFASVPSSTQP 182
F + + P
Sbjct: 166 NTFGTTFGPSTP 177
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 295 QRFVKEVYETLRSSPQWNEMAFLITYDEHGGFFDXXXXXXXXXXXXDGVIGPDPFFFRFD 354
Q ++ ++ S W+ A +I YD+ G +D G G
Sbjct: 360 QEWLVNTINRIQQSKDWDSTAIIIIYDDSDGDYDHVYSPKSQFSDIKGRQG--------- 410
Query: 355 RLGVRVPTLLISPW 368
G R+P L+ISP+
Sbjct: 411 -YGPRLPMLVISPY 423
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 181 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 210
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 202 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 231
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,834,005
Number of Sequences: 62578
Number of extensions: 480711
Number of successful extensions: 927
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 8
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)