BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016087
         (395 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H4Q|A Chain A, Crystal Structure Of Putative Acetyltransferase
           (Np_371943.1) From Staphylococcus Aureus Mu50 At 2.50 A
           Resolution
          Length = 188

 Score = 31.6 bits (70), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 79  GSEAGKQKLREIFNYIKETLRIRHNEMIRLMNFSLFVP-------------GDSLEICLP 125
           GS+  K    E+FNY+ + ++ R  E+I    F+L  P             G+ L    P
Sbjct: 113 GSKEYKGAATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLXEYPP 172

Query: 126 YIDQCIFYALGCNVKE 141
           Y     FYA   N+KE
Sbjct: 173 YDKGEPFYAYYKNLKE 188


>pdb|4GMJ|B Chain B, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
 pdb|4GMJ|D Chain D, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
 pdb|4GMJ|F Chain F, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
          Length = 285

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 149 NPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCP 208
           N +FNL E +   +SIE+LT +G++ +      +   T+ F       +L++ S ++ C 
Sbjct: 98  NFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIE--TQYF------AELLMTSGVVLCE 149

Query: 209 LIEYLSLQ 216
            +++LS  
Sbjct: 150 GVKWLSFH 157


>pdb|2D5R|A Chain A, Crystal Structure Of A Tob-Hcaf1 Complex
          Length = 252

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 149 NPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCP 208
           N +FNL E +   +SIE+LT +G++ +      +   T+ F       +L++ S ++ C 
Sbjct: 88  NFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIE--TQYF------AELLMTSGVVLCE 139

Query: 209 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF 268
            +++LS          +   L K+        EEL    I+        +  P+ +  K+
Sbjct: 140 GVKWLSFH-----SGYDFGYLIKILTNSNLPEEELDFFEIL-------RLFFPVIYDVKY 187

Query: 269 NLASCKFLK 277
            + SCK LK
Sbjct: 188 LMKSCKNLK 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,690,611
Number of Sequences: 62578
Number of extensions: 403136
Number of successful extensions: 1125
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 6
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)