Query 016087
Match_columns 395
No_of_seqs 168 out of 2310
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 1.3E-21 2.8E-26 170.9 3.1 279 20-350 97-396 (419)
2 KOG4341 F-box protein containi 99.8 6.7E-21 1.5E-25 173.5 -1.5 333 23-387 74-478 (483)
3 PLN03210 Resistant to P. syrin 99.3 2.8E-11 6.1E-16 131.4 12.2 189 160-350 632-855 (1153)
4 PLN00113 leucine-rich repeat r 99.2 3.1E-11 6.7E-16 130.0 10.6 215 137-354 93-345 (968)
5 PLN00113 leucine-rich repeat r 99.2 7.6E-11 1.7E-15 126.9 10.6 214 137-353 140-368 (968)
6 KOG4341 F-box protein containi 99.1 4.4E-12 9.5E-17 116.4 -1.7 216 137-352 138-383 (483)
7 KOG3207 Beta-tubulin folding c 99.1 4.5E-11 9.7E-16 110.5 1.7 200 159-358 118-343 (505)
8 PLN03210 Resistant to P. syrin 99.0 8.1E-10 1.8E-14 120.1 10.2 210 137-352 634-904 (1153)
9 KOG4194 Membrane glycoprotein 99.0 3.9E-10 8.4E-15 107.9 4.1 244 137-383 149-464 (873)
10 cd00116 LRR_RI Leucine-rich re 98.9 1.4E-09 3.1E-14 101.9 7.0 193 137-329 51-287 (319)
11 cd00116 LRR_RI Leucine-rich re 98.9 1.2E-09 2.6E-14 102.4 5.4 219 137-356 23-293 (319)
12 KOG2120 SCF ubiquitin ligase, 98.9 1.8E-10 3.8E-15 101.7 -0.6 168 185-352 187-374 (419)
13 PF12937 F-box-like: F-box-lik 98.8 2E-09 4.3E-14 70.2 2.1 35 21-55 1-35 (47)
14 KOG0444 Cytoskeletal regulator 98.7 1.2E-10 2.5E-15 112.2 -8.1 213 137-352 126-373 (1255)
15 KOG0444 Cytoskeletal regulator 98.6 6.5E-10 1.4E-14 107.1 -6.1 158 147-308 111-277 (1255)
16 KOG3207 Beta-tubulin folding c 98.6 1E-08 2.2E-13 95.1 0.1 172 137-308 146-335 (505)
17 KOG4194 Membrane glycoprotein 98.5 4.3E-08 9.3E-13 94.2 1.3 195 157-355 97-307 (873)
18 PRK15387 E3 ubiquitin-protein 98.4 5.9E-07 1.3E-11 92.2 9.0 18 338-355 442-459 (788)
19 PRK15387 E3 ubiquitin-protein 98.4 9.7E-07 2.1E-11 90.7 10.2 197 137-354 201-415 (788)
20 KOG1909 Ran GTPase-activating 98.4 2.3E-07 5E-12 84.0 3.9 174 181-354 90-311 (382)
21 PF00646 F-box: F-box domain; 98.4 8.8E-08 1.9E-12 62.7 0.5 37 21-57 3-39 (48)
22 PRK15370 E3 ubiquitin-protein 98.3 5.1E-07 1.1E-11 93.0 4.7 200 137-354 199-428 (754)
23 KOG1947 Leucine rich repeat pr 98.3 2E-07 4.3E-12 92.4 1.5 210 137-353 188-439 (482)
24 PRK15370 E3 ubiquitin-protein 98.3 1.8E-06 3.8E-11 89.1 8.2 138 137-287 178-317 (754)
25 smart00256 FBOX A Receptor for 98.3 5.5E-07 1.2E-11 56.6 2.3 34 24-57 1-34 (41)
26 PF14580 LRR_9: Leucine-rich r 98.2 1.8E-06 3.8E-11 72.9 4.7 125 161-309 18-150 (175)
27 KOG0618 Serine/threonine phosp 98.2 2.2E-07 4.9E-12 93.7 -1.0 215 129-351 258-510 (1081)
28 KOG1909 Ran GTPase-activating 98.1 1.3E-06 2.8E-11 79.3 2.6 62 249-310 211-281 (382)
29 KOG1947 Leucine rich repeat pr 98.1 8E-07 1.7E-11 88.1 -0.2 129 181-309 186-331 (482)
30 PF14580 LRR_9: Leucine-rich r 98.0 1.8E-06 3.9E-11 72.8 1.7 78 272-350 62-149 (175)
31 KOG3665 ZYG-1-like serine/thre 98.0 3.5E-06 7.6E-11 86.1 3.5 124 230-356 122-265 (699)
32 KOG2982 Uncharacterized conser 98.0 9E-06 1.9E-10 72.5 5.3 190 137-326 71-285 (418)
33 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 7.9E-11 85.9 2.1 147 162-309 122-285 (699)
34 KOG1259 Nischarin, modulator o 97.7 2.2E-05 4.7E-10 70.1 2.3 189 160-354 180-412 (490)
35 KOG0617 Ras suppressor protein 97.7 9.7E-07 2.1E-11 72.3 -5.8 149 157-309 28-183 (264)
36 KOG2982 Uncharacterized conser 97.6 5.5E-05 1.2E-09 67.6 4.4 191 163-353 46-261 (418)
37 KOG1259 Nischarin, modulator o 97.6 1.6E-05 3.4E-10 71.0 0.7 126 182-310 283-410 (490)
38 KOG0618 Serine/threonine phosp 97.5 1.2E-05 2.6E-10 81.6 -1.8 202 138-353 69-276 (1081)
39 KOG0472 Leucine-rich repeat pr 97.5 1.1E-06 2.5E-11 81.0 -8.6 99 252-353 207-309 (565)
40 KOG0617 Ras suppressor protein 97.2 1.1E-05 2.4E-10 66.2 -4.5 134 151-287 45-186 (264)
41 PRK15386 type III secretion pr 97.2 0.001 2.3E-08 63.3 7.8 135 181-329 50-186 (426)
42 KOG1859 Leucine-rich repeat pr 97.2 7E-05 1.5E-09 74.4 -1.0 198 106-310 55-290 (1096)
43 KOG4658 Apoptotic ATPase [Sign 97.1 0.004 8.6E-08 65.8 11.4 261 84-355 454-731 (889)
44 KOG4658 Apoptotic ATPase [Sign 97.1 0.00011 2.4E-09 77.3 -0.2 80 137-218 571-652 (889)
45 KOG0472 Leucine-rich repeat pr 97.1 6.7E-06 1.5E-10 76.1 -8.5 156 149-309 147-307 (565)
46 KOG4237 Extracellular matrix p 96.8 0.00028 6.1E-09 65.5 0.1 66 291-358 266-339 (498)
47 PRK15386 type III secretion pr 96.8 0.0029 6.3E-08 60.3 6.9 158 159-333 49-213 (426)
48 PF13855 LRR_8: Leucine rich r 96.8 0.00099 2.1E-08 45.7 2.8 58 251-309 1-59 (61)
49 KOG2739 Leucine-rich acidic nu 96.8 0.00029 6.3E-09 62.0 -0.1 110 153-262 34-154 (260)
50 COG5238 RNA1 Ran GTPase-activa 96.7 0.0026 5.5E-08 56.5 5.0 95 125-219 17-131 (388)
51 PF13855 LRR_8: Leucine rich r 96.5 0.0052 1.1E-07 42.0 4.7 55 231-285 2-60 (61)
52 COG4886 Leucine-rich repeat (L 96.5 0.0013 2.8E-08 63.6 2.3 166 159-329 113-286 (394)
53 COG4886 Leucine-rich repeat (L 96.4 0.0039 8.4E-08 60.3 4.6 157 149-310 126-288 (394)
54 KOG2739 Leucine-rich acidic nu 96.4 0.00097 2.1E-08 58.7 0.2 103 207-309 42-153 (260)
55 KOG4237 Extracellular matrix p 96.1 0.00043 9.2E-09 64.3 -3.3 80 270-352 270-357 (498)
56 PF07723 LRR_2: Leucine Rich R 96.1 0.008 1.7E-07 33.3 2.9 25 184-208 1-26 (26)
57 PF12799 LRR_4: Leucine Rich r 95.9 0.0095 2.1E-07 37.7 3.2 33 275-309 2-34 (44)
58 COG5238 RNA1 Ran GTPase-activa 95.9 0.022 4.7E-07 50.8 6.4 214 125-354 44-316 (388)
59 KOG0281 Beta-TrCP (transducin 95.9 0.0028 6.1E-08 57.6 0.9 41 13-53 67-111 (499)
60 KOG2123 Uncharacterized conser 95.5 0.0031 6.7E-08 56.1 -0.4 96 230-327 19-124 (388)
61 PLN03215 ascorbic acid mannose 95.5 0.0082 1.8E-07 56.6 2.1 37 21-57 4-41 (373)
62 PLN03150 hypothetical protein; 95.3 0.029 6.2E-07 57.6 5.9 61 249-310 440-501 (623)
63 KOG1644 U2-associated snRNP A' 95.3 0.036 7.8E-07 47.2 5.3 59 160-219 62-124 (233)
64 KOG2997 F-box protein FBX9 [Ge 95.2 0.01 2.2E-07 53.6 1.7 35 19-53 105-144 (366)
65 KOG3864 Uncharacterized conser 95.1 0.0083 1.8E-07 51.0 1.0 62 270-331 121-187 (221)
66 PF12799 LRR_4: Leucine Rich r 95.0 0.018 3.9E-07 36.5 2.0 33 184-218 2-34 (44)
67 KOG1644 U2-associated snRNP A' 94.7 0.05 1.1E-06 46.4 4.5 97 163-262 43-151 (233)
68 KOG1859 Leucine-rich repeat pr 94.5 0.0099 2.2E-07 59.7 -0.1 36 271-309 184-219 (1096)
69 PLN03150 hypothetical protein; 94.2 0.095 2.1E-06 53.8 6.2 99 253-352 420-526 (623)
70 KOG3864 Uncharacterized conser 94.1 0.0066 1.4E-07 51.6 -1.9 79 163-241 102-187 (221)
71 KOG0532 Leucine-rich repeat (L 93.1 0.01 2.2E-07 58.0 -2.8 132 153-287 112-247 (722)
72 KOG2123 Uncharacterized conser 93.0 0.0044 9.6E-08 55.2 -5.0 57 161-218 40-98 (388)
73 KOG0531 Protein phosphatase 1, 91.7 0.032 6.9E-07 54.4 -1.4 101 158-262 91-197 (414)
74 KOG0532 Leucine-rich repeat (L 90.6 0.011 2.3E-07 57.9 -5.7 154 151-310 87-245 (722)
75 smart00367 LRR_CC Leucine-rich 88.1 0.49 1.1E-05 25.9 2.1 22 182-203 1-23 (26)
76 KOG0274 Cdc4 and related F-box 87.9 0.2 4.3E-06 50.3 0.7 42 13-54 100-141 (537)
77 PF13516 LRR_6: Leucine Rich r 87.2 0.43 9.4E-06 25.5 1.5 22 182-203 1-22 (24)
78 KOG0531 Protein phosphatase 1, 86.8 0.2 4.3E-06 48.9 0.0 162 138-309 96-265 (414)
79 PF13013 F-box-like_2: F-box-l 86.4 0.51 1.1E-05 36.3 2.1 29 21-49 22-50 (109)
80 PF13306 LRR_5: Leucine rich r 84.4 1.6 3.5E-05 34.3 4.3 11 206-216 10-20 (129)
81 PF13306 LRR_5: Leucine rich r 79.7 6.9 0.00015 30.6 6.4 76 230-307 12-89 (129)
82 PF13504 LRR_7: Leucine rich r 76.8 1.6 3.4E-05 21.3 1.1 6 302-307 4-9 (17)
83 smart00368 LRR_RI Leucine rich 75.0 2.8 6.1E-05 23.4 2.0 22 183-204 2-23 (28)
84 KOG4579 Leucine-rich repeat (L 66.5 0.77 1.7E-05 37.0 -2.2 37 181-219 75-111 (177)
85 PF09372 PRANC: PRANC domain; 65.1 3.6 7.8E-05 30.9 1.3 25 19-43 70-94 (97)
86 KOG4579 Leucine-rich repeat (L 64.7 2.4 5.2E-05 34.3 0.2 16 270-285 96-111 (177)
87 KOG3926 F-box proteins [Amino 60.8 4 8.7E-05 36.4 1.0 48 19-66 200-254 (332)
88 KOG3763 mRNA export factor TAP 53.3 14 0.00031 36.7 3.4 63 243-305 236-307 (585)
89 KOG3763 mRNA export factor TAP 46.9 15 0.00032 36.6 2.4 38 181-218 216-254 (585)
90 KOG4308 LRR-containing protein 41.6 0.74 1.6E-05 45.5 -7.4 35 276-310 235-273 (478)
91 smart00370 LRR Leucine-rich re 38.6 20 0.00044 19.1 1.2 13 183-195 2-14 (26)
92 smart00369 LRR_TYP Leucine-ric 38.6 20 0.00044 19.1 1.2 13 183-195 2-14 (26)
93 KOG1665 AFH1-interacting prote 31.4 67 0.0014 28.1 3.7 39 181-219 169-207 (302)
94 KOG4408 Putative Mg2+ and Co2+ 25.0 17 0.00036 33.7 -1.0 37 21-57 8-44 (386)
95 PF01827 FTH: FTH domain; Int 24.4 3.5E+02 0.0075 21.2 8.4 117 90-215 3-124 (142)
96 smart00365 LRR_SD22 Leucine-ri 24.3 49 0.0011 18.1 1.1 13 183-195 2-14 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-21 Score=170.93 Aligned_cols=279 Identities=22% Similarity=0.269 Sum_probs=176.5
Q ss_pred ccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh------ccccceeeeccccccccccCCCCCcchhhhhhHHHHHHH
Q 016087 20 RISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNY 93 (395)
Q Consensus 20 ~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 93 (395)
.|..|||||+..||+.|+.+|+++++.|||||+++ |.. ++...+...+ +.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p---------------------~~ 152 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP---------------------DV 152 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh---------------------hH
Confidence 37789999999999999999999999999999974 544 4444443332 22
Q ss_pred HHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEccee
Q 016087 94 IKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLK 173 (395)
Q Consensus 94 v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~ 173 (395)
..+++ . +++..+++--.. ..+ ..+... ...+..++++++|+........+...+..|++|+.|+|.|..
T Consensus 153 l~~l~-~-----rgV~v~Rlar~~---~~~-prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~ 221 (419)
T KOG2120|consen 153 LGRLL-S-----RGVIVFRLARSF---MDQ-PRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR 221 (419)
T ss_pred HHHHH-h-----CCeEEEEcchhh---hcC-chhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc
Confidence 33333 2 245555443111 111 111111 112335789999988766667777777889999999999988
Q ss_pred ccCCCcc---CCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhcc
Q 016087 174 LESPRSV---KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCII 249 (395)
Q Consensus 174 ~~~~~~~---~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~ 249 (395)
+..+... .-.+|+.|+|+.+.- +..++.-++.+|..|..|+++-|...+.. +... +..-
T Consensus 222 LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~----------------V~hi 284 (419)
T KOG2120|consen 222 LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVA----------------VAHI 284 (419)
T ss_pred cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHH----------------Hhhh
Confidence 7643222 457788888887776 77777878888888888888887654211 0000 0012
Q ss_pred CCceeEEEEeCCC----CcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCc
Q 016087 250 AQDVQEVSIQGPL----PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRS 321 (395)
Q Consensus 250 ~p~L~~L~l~~~~----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~ 321 (395)
.++|+.|+++|+. ...+......||+|.+|+|+.+..........+.+++.|++|.++.|..+..- ....|.
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 3344444444443 11223345567888888888776333355667788899999999998766431 124588
Q ss_pred cCEEecccCCCch---hhhhhCCCcceeEEee
Q 016087 322 LKLLEIYDCLRLV---EVKIAASSLSIFKYSG 350 (395)
Q Consensus 322 Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~ 350 (395)
|.+|++.+|..-. -+...||+|+.-.-..
T Consensus 365 l~yLdv~g~vsdt~mel~~e~~~~lkin~q~~ 396 (419)
T KOG2120|consen 365 LVYLDVFGCVSDTTMELLKEMLSHLKINCQHF 396 (419)
T ss_pred eEEEEeccccCchHHHHHHHhCccccccceee
Confidence 9999988776543 3335677776544333
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.79 E-value=6.7e-21 Score=173.52 Aligned_cols=333 Identities=18% Similarity=0.185 Sum_probs=224.3
Q ss_pred CCCHHHHHHHhcCCCcccchhhhhhhhhhhhh------ccccceeeeccccccccccCCCCCcchhhhhhHHHHHHHHHH
Q 016087 23 NLPEPILHHILSFLPFTQTVQTRVLSRTWKRA------WHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKE 96 (395)
Q Consensus 23 ~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~ 96 (395)
.||.|++.+|||+|+.+.++|++++|+-|... |+.+..++|..+.-. .+|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g----------------------~VV~~ 131 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG----------------------GVVEN 131 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC----------------------cceeh
Confidence 49999999999999999999999999999854 777666544444221 22444
Q ss_pred HHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHH--HhCCCcEEEEEecCC-CcccccccccCCCCccEEEEccee
Q 016087 97 TLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYA--LGCNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGLK 173 (395)
Q Consensus 97 ~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~--~~~~l~~L~l~~~~~-~~~~l~~~l~~~~~L~~L~L~~~~ 173 (395)
++ .|.++ .++.++++..... . ++-+... ..+++++|.+..+.. ....+-..-..|++|++|.|.+|.
T Consensus 132 ~~-~Rcgg--~lk~LSlrG~r~v------~-~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 132 MI-SRCGG--FLKELSLRGCRAV------G-DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred Hh-hhhcc--ccccccccccccC------C-cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 44 44444 8999999876531 1 1112222 347888887765432 222333333358899999998875
Q ss_pred ccC-----CCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCC--------------------------
Q 016087 174 LES-----PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL-------------------------- 221 (395)
Q Consensus 174 ~~~-----~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~-------------------------- 221 (395)
... ..+..|++|++|++++|.- ...++..+..+|..++.+..++|...
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 431 1233789999999998887 66677777888888777777766443
Q ss_pred ceEe---eC-CCCCcceEEeccccccchh-----hccCCceeEEEEeCCC---CcccccccccccccceeEecccc-cch
Q 016087 222 KNLE---LS-GLTKLNKFEVCDAEELQRL-----CIIAQDVQEVSIQGPL---PFQCKFNLASCKFLKYLRFALTH-IKD 288 (395)
Q Consensus 222 ~~~~---i~-~~~~L~~L~i~~c~~l~~l-----~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~L~~L~L~~~~-~~~ 288 (395)
+... +. .+..|+.|..++|..+... ...+++|+.+-+.++. +..+...-.+++.|+.+++..+. +++
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence 1111 11 2457788888888744443 3367899999998887 23344445678999999998887 556
Q ss_pred HHHHHHhccCCCccEEEeeCCCCCchhcc--------CCCccCEEecccCCCch----hhhhhCCCcceeEEeeeee---
Q 016087 289 EWLCNQISKFPLLESLLIAGCDDLKSINI--------SSRSLKLLEIYDCLRLV----EVKIAASSLSIFKYSGDVI--- 353 (395)
Q Consensus 289 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~--------~~~~Lk~L~L~~~~~l~----~l~~~~~~L~~L~~~~~~~--- 353 (395)
..+..+..+||.|++|.++.|..++..++ ....|+.+++++|..++ +....|++||.+++.++..
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 66888889999999999999987755422 34789999999999887 3346799999999998863
Q ss_pred ---ecceeeEEeeccccceecccCCchhhhhhcceee
Q 016087 354 ---SFQLGAITFSKSHLLFQTENSSSEWYTEHFNFLQ 387 (395)
Q Consensus 354 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (395)
......++..+.+.||.-+-=+...-..||-+-.
T Consensus 442 ~~i~~~~~~lp~i~v~a~~a~~t~p~~v~~~~~~v~r 478 (483)
T KOG4341|consen 442 EAISRFATHLPNIKVHAYFAPVTPPGFVKGLHQRVCR 478 (483)
T ss_pred hhhHHHHhhCccceehhhccCCCCccccccchhhccc
Confidence 2222334566667777643222222244444433
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=2.8e-11 Score=131.39 Aligned_cols=189 Identities=20% Similarity=0.217 Sum_probs=92.5
Q ss_pred CCCCccEEEEcceec-c-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-CCCCcceEE
Q 016087 160 CSNSIEILTLAGLKL-E-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNKFE 236 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~-~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~~~~L~~L~ 236 (395)
.+++|+.|+|+++.. . .|....+++|++|+|.+|..- ..+...+..+++|+.|++.+|..+..+... .+++|+.|.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 344444444444321 1 222224455555555554321 112222344555555555555444332221 345666666
Q ss_pred eccccccchhhccCCceeEEEEeCCCCcccccc------------------------------cccccccceeEeccccc
Q 016087 237 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN------------------------------LASCKFLKYLRFALTHI 286 (395)
Q Consensus 237 i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~L~~L~L~~~~~ 286 (395)
+++|..+..+....++|++|.+.++....++.. ...+++|+.|+|++|..
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 666654443333344555555555442111111 01124566666666543
Q ss_pred chHHHHHHhccCCCccEEEeeCCCCCchhcc--CCCccCEEecccCCCchhhhhhCCCcceeEEee
Q 016087 287 KDEWLCNQISKFPLLESLLIAGCDDLKSINI--SSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSG 350 (395)
Q Consensus 287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~--~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~ 350 (395)
... +...+..+++|+.|+|.+|..++.+.. .+++|+.|++++|..+..++...++|+.|++++
T Consensus 791 l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 791 LVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred ccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC
Confidence 222 233356778888888888877765543 357788888877766554443333344444333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.23 E-value=3.1e-11 Score=129.96 Aligned_cols=215 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087 137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 214 (395)
++++.|++..... ...+|..++ .+++|++|+|++|.+. ......+++|++|+|++|.+... +...+..+++|+.|+
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEE
Confidence 5666666643221 124555544 5666777777666553 11112456666666666665321 122245566666666
Q ss_pred eecCCCCce--EeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCc-------------------------
Q 016087 215 LQLCPGLKN--LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF------------------------- 264 (395)
Q Consensus 215 l~~c~~~~~--~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~------------------------- 264 (395)
+++|..... ..+..+++|+.|++++|.. ++......++|+.|+++++...
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 666542211 1223445555555555531 1111123445555555444311
Q ss_pred ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecccCCCch---hhhh
Q 016087 265 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDCLRLV---EVKI 338 (395)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~~~~l~---~l~~ 338 (395)
..+..++.+++|+.|++.++.+.+.. ...+..+++|+.|++++|.... .....+++|+.|+++++.... ....
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPI-PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccC-chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 12223344445555555444433211 1122344555555555443111 112234566666665443221 2234
Q ss_pred hCCCcceeEEeeeeee
Q 016087 339 AASSLSIFKYSGDVIS 354 (395)
Q Consensus 339 ~~~~L~~L~~~~~~~~ 354 (395)
.+++|+.|++.+|.+.
T Consensus 330 ~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 330 SLPRLQVLQLWSNKFS 345 (968)
T ss_pred cCCCCCEEECcCCCCc
Confidence 5677777777766653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=7.6e-11 Score=126.92 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=105.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
+++++|++..... ...+|..+..+++|++|+|++|.+. .|.. ..+++|++|+|++|.+... +...+..+++|+.|
T Consensus 140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence 3455555433221 1244555566667777777766543 2222 2566677777766665321 12234556666666
Q ss_pred eeecCCCCceE--eeCCCCCcceEEecccc---ccchhhccCCceeEEEEeCCCC-cccccccccccccceeEecccccc
Q 016087 214 SLQLCPGLKNL--ELSGLTKLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 214 ~l~~c~~~~~~--~i~~~~~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 287 (395)
++.+|...... .+..+++|++|++.+|. .++......++|++|.++++.. ...+..+..+++|++|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 66666432111 23445667777776664 1121222456666666665542 122333445566666666665544
Q ss_pred hHHHHHHhccCCCccEEEeeCCCCCchh---ccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeee
Q 016087 288 DEWLCNQISKFPLLESLLIAGCDDLKSI---NISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~~---~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~ 353 (395)
.. +...+..+++|+.|++.++.....+ ...+++|+.|+++++.-. +.....+++|+.|++++|.+
T Consensus 298 ~~-~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 298 GE-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred cC-CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 32 2233445566666666554322111 223455555555544321 12223345555555554443
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=4.4e-12 Score=116.44 Aligned_cols=216 Identities=23% Similarity=0.286 Sum_probs=144.1
Q ss_pred CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCC-----CccCCCCCcEEEeeeeec-ChHHHHHHHcCCCC
Q 016087 137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESP-----RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPL 209 (395)
Q Consensus 137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~-----~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~ 209 (395)
..++++.+..+ +.+...+-.....|+++++|.+.+|..... -+..|++|++|+|..|.. ++..++.+..+||+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 57888888764 344556666667899999999999874421 223799999999999766 88899999999999
Q ss_pred ccEEeeecCCCCce--E--eeCCCCCcceEEeccccc--cchh---hccCCceeEEEEeCCC---Ccccccccccccccc
Q 016087 210 IEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEE--LQRL---CIIAQDVQEVSIQGPL---PFQCKFNLASCKFLK 277 (395)
Q Consensus 210 Le~L~l~~c~~~~~--~--~i~~~~~L~~L~i~~c~~--l~~l---~~~~p~L~~L~l~~~~---~~~~~~~~~~~~~L~ 277 (395)
|++|+++.|+.+.. + ...++..++.+...+|.+ +..+ ...++-+..+++..+. +.++...-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999987633 2 223556677777778862 2222 2344555666644443 111122223466677
Q ss_pred eeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCc-----hhccCCCccCEEecccCCCch-----hhhhhCCCccee
Q 016087 278 YLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLK-----SINISSRSLKLLEIYDCLRLV-----EVKIAASSLSIF 346 (395)
Q Consensus 278 ~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~Lk~L~L~~~~~l~-----~l~~~~~~L~~L 346 (395)
.|..+++. +++..+..+..++++|+.|.+..|..+. .+...++.|+.+++..|.... ++..+||.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 77776654 6666677777777777777777776553 344456777777776654322 344567777777
Q ss_pred EEeeee
Q 016087 347 KYSGDV 352 (395)
Q Consensus 347 ~~~~~~ 352 (395)
.+++|.
T Consensus 378 slshce 383 (483)
T KOG4341|consen 378 SLSHCE 383 (483)
T ss_pred Chhhhh
Confidence 777664
No 7
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.5e-11 Score=110.48 Aligned_cols=200 Identities=13% Similarity=0.075 Sum_probs=147.2
Q ss_pred cCCCCccEEEEcceeccCCC----ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCC---ceEeeCCCC
Q 016087 159 LCSNSIEILTLAGLKLESPR----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLT 230 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~~~~----~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~---~~~~i~~~~ 230 (395)
.+.++|+...|.++.+..+. ...||+++.|+|+.+-+ +...+.+++...|+||.|+++.+... .+.....++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45678889999988887433 23899999999999999 88899999999999999999998543 222233568
Q ss_pred CcceEEecccc----ccchhhccCCceeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEE
Q 016087 231 KLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 305 (395)
Q Consensus 231 ~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 305 (395)
.|+.|.++.|. .+..+...+|+|+.|++.++.. .........+..|+.|+|+++.+.+..-......+|+|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999996 5667778999999999988742 111223445789999999999866655555678899999999
Q ss_pred eeCCC--CCc-----h--hccCCCccCEEecccCCC--chhh--hhhCCCcceeEEeeeeeeccee
Q 016087 306 IAGCD--DLK-----S--INISSRSLKLLEIYDCLR--LVEV--KIAASSLSIFKYSGDVISFQLG 358 (395)
Q Consensus 306 L~~~~--~l~-----~--~~~~~~~Lk~L~L~~~~~--l~~l--~~~~~~L~~L~~~~~~~~~~~~ 358 (395)
++.+. .+. . ....+|+|++|.+....- ..++ ....++|..|.+-++.++.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 98863 221 1 123469999999974322 2322 2457778888877776655544
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=8.1e-10 Score=120.14 Aligned_cols=210 Identities=19% Similarity=0.277 Sum_probs=115.5
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
.+++.+++..+.. ...+|. +..+++|+.|+|++|... .|... .+++|+.|++++|..-. .+... .+++.|+.|
T Consensus 634 ~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~-i~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTG-INLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCc-CCCCCCCEE
Confidence 5777777754321 234443 556778888888877532 33332 67778888887765310 11110 146677777
Q ss_pred eeecCCCCceEeeC---------------------CCCCcceEEeccccc---------cch-hhccCCceeEEEEeCCC
Q 016087 214 SLQLCPGLKNLELS---------------------GLTKLNKFEVCDAEE---------LQR-LCIIAQDVQEVSIQGPL 262 (395)
Q Consensus 214 ~l~~c~~~~~~~i~---------------------~~~~L~~L~i~~c~~---------l~~-l~~~~p~L~~L~l~~~~ 262 (395)
++++|..+....-. .+++|+.|.+..+.. +.. .....++|+.|.++++.
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 77777543221100 122333333333210 000 01124677788887765
Q ss_pred -CcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc-----------------------cC
Q 016087 263 -PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN-----------------------IS 318 (395)
Q Consensus 263 -~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-----------------------~~ 318 (395)
...++..++.+++|+.|++.+|..... +.. ...+++|+.|++++|..+..+. ..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~-LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLET-LPT-GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCe-eCC-CCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 223455567788888888877642211 111 1146777777777775543321 23
Q ss_pred CCccCEEecccCCCchhhh---hhCCCcceeEEeeee
Q 016087 319 SRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV 352 (395)
Q Consensus 319 ~~~Lk~L~L~~~~~l~~l~---~~~~~L~~L~~~~~~ 352 (395)
+++|+.|+|++|.++..++ ..+++|+.+++++|.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4677788887777777554 346677777777774
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.97 E-value=3.9e-10 Score=107.86 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=119.1
Q ss_pred CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceeccC--C-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLES--P-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~~--~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
+.++.++|+-... ..+|..-+ .-.++++|+|+++.+.. . ....+.+|.+|.|+.++++.-. ...+.+.|+|+.
T Consensus 149 ~alrslDLSrN~i--s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLI--SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchh--hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence 4677777754222 22222222 23567888887776651 1 1225566777777777763211 223455666666
Q ss_pred EeeecCCCC--ceEeeCCCCCcceEEecccc-------------ccchh--------------hccCCceeEEEEeCCCC
Q 016087 213 LSLQLCPGL--KNLELSGLTKLNKFEVCDAE-------------ELQRL--------------CIIAQDVQEVSIQGPLP 263 (395)
Q Consensus 213 L~l~~c~~~--~~~~i~~~~~L~~L~i~~c~-------------~l~~l--------------~~~~p~L~~L~l~~~~~ 263 (395)
|++..+..- ..+...++++|+.|.+..+. ++..+ ......|+.|+++.+..
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 666655321 12223334444444433321 11111 01223344444444432
Q ss_pred ccccc-ccccccccceeEecccccch-----------------------HHHHHHhccCCCccEEEeeCCC---CCch--
Q 016087 264 FQCKF-NLASCKFLKYLRFALTHIKD-----------------------EWLCNQISKFPLLESLLIAGCD---DLKS-- 314 (395)
Q Consensus 264 ~~~~~-~~~~~~~L~~L~L~~~~~~~-----------------------~~~~~l~~~~~~L~~L~L~~~~---~l~~-- 314 (395)
..+.+ .++.+++|+.|+|++|.++. ..-...+.++.+|++|+|+++. -+++
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 22222 24556666666666655432 1112334455666666666542 1111
Q ss_pred -hccCCCccCEEecccC--CCch-hhhhhCCCcceeEEeeeeeecceeeE--Eeecccccee----cccCCchhhhhhc
Q 016087 315 -INISSRSLKLLEIYDC--LRLV-EVKIAASSLSIFKYSGDVISFQLGAI--TFSKSHLLFQ----TENSSSEWYTEHF 383 (395)
Q Consensus 315 -~~~~~~~Lk~L~L~~~--~~l~-~l~~~~~~L~~L~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 383 (395)
....++.|+.|.+.+. ..++ ....+.++||.|++.+|.+...+... ++.-+++.+. .=+|.=+|..+-.
T Consensus 386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 1123578888888653 2222 23366899999999999874333322 2222233332 2347777876554
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=1.4e-09 Score=101.88 Aligned_cols=193 Identities=21% Similarity=0.127 Sum_probs=105.3
Q ss_pred CCCcEEEEEecCCC-----cccccccccCCCCccEEEEcceecc--CCCc-cCC---CCCcEEEeeeeecChHHHHH---
Q 016087 137 CNVKELSLELLGNP-----RFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKL---SSLTKLFLMRVDATDLVLQS--- 202 (395)
Q Consensus 137 ~~l~~L~l~~~~~~-----~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~---~~Lk~L~L~~~~~~~~~l~~--- 202 (395)
++++++++...... ...++..+..+++|++|++++|.+. .+.. ..+ ++|++|++++|.+++.....
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 45777777543221 1223334456778888888887764 1111 112 55888888888885444333
Q ss_pred HHcCC-CCccEEeeecCCCCce----E--eeCCCCCcceEEecccc----ccchhh---ccCCceeEEEEeCCCCcc---
Q 016087 203 LLIGC-PLIEYLSLQLCPGLKN----L--ELSGLTKLNKFEVCDAE----ELQRLC---IIAQDVQEVSIQGPLPFQ--- 265 (395)
Q Consensus 203 l~~~~-p~Le~L~l~~c~~~~~----~--~i~~~~~L~~L~i~~c~----~l~~l~---~~~p~L~~L~l~~~~~~~--- 265 (395)
.+..+ ++|+.|++.+|..... + .+..+++|+.|++.+|. .+..+. ...++|+.|+++++...+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 33445 7888888888853310 0 12234567777777764 111111 133577777776664221
Q ss_pred --cccccccccccceeEecccccchHHHHHHhccC----CCccEEEeeCCCCC----chh---ccCCCccCEEeccc
Q 016087 266 --CKFNLASCKFLKYLRFALTHIKDEWLCNQISKF----PLLESLLIAGCDDL----KSI---NISSRSLKLLEIYD 329 (395)
Q Consensus 266 --~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~----~~L~~L~L~~~~~l----~~~---~~~~~~Lk~L~L~~ 329 (395)
+...+..+++|++|++++|.+++..+..+...+ +.|++|++.+|..- ..+ ....++|+++++++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 112244556677777777766655544444433 56777777666421 111 11235666666654
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.2e-09 Score=102.39 Aligned_cols=219 Identities=20% Similarity=0.092 Sum_probs=145.4
Q ss_pred CCCcEEEEEecCCC---cccccccccCCCCccEEEEcceeccC-CC--------ccCCCCCcEEEeeeeecCh---HHHH
Q 016087 137 CNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLES-PR--------SVKLSSLTKLFLMRVDATD---LVLQ 201 (395)
Q Consensus 137 ~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~~-~~--------~~~~~~Lk~L~L~~~~~~~---~~l~ 201 (395)
.+++.+++..+... ...++..+...++|++|+++++.+.. +. ...+++|+.|+++++.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 46999999775542 23455556677889999998876541 11 1157899999999999842 2344
Q ss_pred HHHcCCCCccEEeeecCCCCc-e-----EeeCCC-CCcceEEecccc-c---cchh---hccCCceeEEEEeCCCCcc--
Q 016087 202 SLLIGCPLIEYLSLQLCPGLK-N-----LELSGL-TKLNKFEVCDAE-E---LQRL---CIIAQDVQEVSIQGPLPFQ-- 265 (395)
Q Consensus 202 ~l~~~~p~Le~L~l~~c~~~~-~-----~~i~~~-~~L~~L~i~~c~-~---l~~l---~~~~p~L~~L~l~~~~~~~-- 265 (395)
.+... ++|++|++++|.... . ..+..+ ++|+.|++.+|. . ...+ ...+++|++|+++++....
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 44455 779999999986431 0 012344 799999999986 1 1122 1245789999998876321
Q ss_pred ---cccccccccccceeEecccccchHHH---HHHhccCCCccEEEeeCCCCCc----hhcc----CCCccCEEecccCC
Q 016087 266 ---CKFNLASCKFLKYLRFALTHIKDEWL---CNQISKFPLLESLLIAGCDDLK----SINI----SSRSLKLLEIYDCL 331 (395)
Q Consensus 266 ---~~~~~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~l~----~~~~----~~~~Lk~L~L~~~~ 331 (395)
+...+...++|++|++++|.+++... ...+..+++|++|++++|.--. .+.. ..+.|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 11123445799999999998776543 3455678899999999975221 1222 23799999998774
Q ss_pred Cc----h---hhhhhCCCcceeEEeeeeeecc
Q 016087 332 RL----V---EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 332 ~l----~---~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
-- . .....+++|+.|++++|.++.+
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 31 1 2234467899999999987655
No 12
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-10 Score=101.73 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=105.7
Q ss_pred CcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe--eCCCCCcceEEeccccccchh-----hccCCceeEEE
Q 016087 185 LTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE--LSGLTKLNKFEVCDAEELQRL-----CIIAQDVQEVS 257 (395)
Q Consensus 185 Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~--i~~~~~L~~L~i~~c~~l~~l-----~~~~p~L~~L~ 257 (395)
|++|+|+...++...+..+++.|.+|+.|++.+..--+.+. +..-.+|+.|+++.|.++... .-.+..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44445554444445555555555555555555543222111 111135555555555533332 22566677777
Q ss_pred EeCCCCcc--cccc-cccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecc
Q 016087 258 IQGPLPFQ--CKFN-LASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIY 328 (395)
Q Consensus 258 l~~~~~~~--~~~~-~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~ 328 (395)
++.|.... +.+. -..-++|+.|+|+|+. +....+..+...||+|.+|+|++|..++.. ...++.|++|+++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 76665211 2222 2235899999999875 555667778899999999999999888652 2357999999999
Q ss_pred cCCCch--hhh--hhCCCcceeEEeeee
Q 016087 329 DCLRLV--EVK--IAASSLSIFKYSGDV 352 (395)
Q Consensus 329 ~~~~l~--~l~--~~~~~L~~L~~~~~~ 352 (395)
.|..+. .+. ...|.|.+|++.|+-
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 998887 222 568999999999884
No 13
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=2e-09 Score=70.18 Aligned_cols=35 Identities=34% Similarity=0.637 Sum_probs=30.8
Q ss_pred cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087 21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW 55 (395)
Q Consensus 21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw 55 (395)
|..||+||+.+||+||+.+|++++++|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999864
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.73 E-value=1.2e-10 Score=112.16 Aligned_cols=213 Identities=17% Similarity=0.144 Sum_probs=117.8
Q ss_pred CCCcEEEEEecCCCccccccccc-CCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIIL-CSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~-~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
.+.-.|.|+. +...++|..++ +...|-.|+|+++++. +|....+.+|++|.|+++.+....+.. +.+...|+.|
T Consensus 126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence 4555555543 44566676665 4667778888888877 444457888888888888775555544 3345566677
Q ss_pred eeecCCCC-ceE--eeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCC-----------------------cc
Q 016087 214 SLQLCPGL-KNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLP-----------------------FQ 265 (395)
Q Consensus 214 ~l~~c~~~-~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~-----------------------~~ 265 (395)
++++...- .++ .+.++.+|+.++++.+. .++......++|+.|.++++.. ..
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence 77664321 111 12234455555555332 2222223445555555555443 22
Q ss_pred cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEecccCC--CchhhhhhCC
Q 016087 266 CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYDCL--RLVEVKIAAS 341 (395)
Q Consensus 266 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~ 341 (395)
++..+..++.|+.|.+..|+++-+.+..-++++.+|+.+..+++. .+..-...|++|+.|.|++.. .+++-+.-++
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLP 362 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcC
Confidence 333334455555555555555444444444555555555555432 112223457888888885433 2334445678
Q ss_pred CcceeEEeeee
Q 016087 342 SLSIFKYSGDV 352 (395)
Q Consensus 342 ~L~~L~~~~~~ 352 (395)
.|+.|++..|+
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 88888888775
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.64 E-value=6.5e-10 Score=107.14 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=106.8
Q ss_pred cCCCcccccccccCCCCccEEEEcceecc-CCCcc--CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC--
Q 016087 147 LGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV--KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-- 221 (395)
Q Consensus 147 ~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~--~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-- 221 (395)
..+...+.|..+-.-+++..|+|+++.+. .|... ++..|-.|+|+.+++. .+..-+....+|++|.+++++..
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHH
Confidence 44556677888878899999999999887 44333 7788888999999872 22333455678999999998643
Q ss_pred ceEeeCCCCCcceEEecccc----ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhcc
Q 016087 222 KNLELSGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISK 297 (395)
Q Consensus 222 ~~~~i~~~~~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 297 (395)
+--.+.++.+|..|.+++.. +++.-.-...||..++++.+.-.-++-.+-.+++|+.|+|++|.++.-. .-...
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~--~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN--MTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--ccHHH
Confidence 22244555667777777654 3333333667888899988775445656677899999999998876311 11112
Q ss_pred CCCccEEEeeC
Q 016087 298 FPLLESLLIAG 308 (395)
Q Consensus 298 ~~~L~~L~L~~ 308 (395)
--+|++|+++.
T Consensus 267 W~~lEtLNlSr 277 (1255)
T KOG0444|consen 267 WENLETLNLSR 277 (1255)
T ss_pred Hhhhhhhcccc
Confidence 24566666655
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1e-08 Score=95.11 Aligned_cols=172 Identities=19% Similarity=0.175 Sum_probs=121.4
Q ss_pred CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCC----CccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087 137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESP----RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le 211 (395)
++++.|+|+.. -..+..+-..+.++++|+.|+|+.+.+..+ ....+++||.|.|+.|.++.+++.+++..||.|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 57777777541 122344444455689999999998887632 1237999999999999999999999999999999
Q ss_pred EEeeecCCCCc--eEeeCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCCCccccc-------ccccccccce
Q 016087 212 YLSLQLCPGLK--NLELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQCKF-------NLASCKFLKY 278 (395)
Q Consensus 212 ~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~~~~-------~~~~~~~L~~ 278 (395)
.|.+.++.... .....-+..|+.|+++++. .+.. .....|.|+-|.++.+...++.. ....+++|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 99999985431 1122234589999999886 2222 22367888888887766332211 2355789999
Q ss_pred eEecccccchHHHHHHhccCCCccEEEeeC
Q 016087 279 LRFALTHIKDEWLCNQISKFPLLESLLIAG 308 (395)
Q Consensus 279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 308 (395)
|++..|.+.+.....-+...++|++|.+..
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred eecccCccccccccchhhccchhhhhhccc
Confidence 999999887665555566778888887654
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.47 E-value=4.3e-08 Score=94.17 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=120.4
Q ss_pred cccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC--ceEeeCCCCCc
Q 016087 157 IILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL--KNLELSGLTKL 232 (395)
Q Consensus 157 ~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~--~~~~i~~~~~L 232 (395)
.+.+.++|+.+++..+.+. .|... ...+|++|+|.++.++.-.-+ -++..|.||.|+++.+... .......-+++
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 3456788888888887776 44444 456688888888887221111 2345678888888887432 11122222478
Q ss_pred ceEEeccccccchhhc----cCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087 233 NKFEVCDAEELQRLCI----IAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 233 ~~L~i~~c~~l~~l~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
++|+++++. +..+.. ...+|..|.++.+....++. .+..++.|+.|+|..|.+.-.. .-.+.+++.|+.|.+.
T Consensus 176 ~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 176 KKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQ 253 (873)
T ss_pred eEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhh
Confidence 888888764 222211 33478888888776444443 4666888888888777654322 2245778888888876
Q ss_pred CCC--CCch-hccCCCccCEEecccCCCchhhh----hhCCCcceeEEeeeeeec
Q 016087 308 GCD--DLKS-INISSRSLKLLEIYDCLRLVEVK----IAASSLSIFKYSGDVISF 355 (395)
Q Consensus 308 ~~~--~l~~-~~~~~~~Lk~L~L~~~~~l~~l~----~~~~~L~~L~~~~~~~~~ 355 (395)
.+. .+++ ..-.+.++++|+|+.. .+.++. .++..|+.|+++.|.+..
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred hcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhhe
Confidence 643 2222 2234578888888632 333333 457788888888887633
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.45 E-value=5.9e-07 Score=92.21 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=13.5
Q ss_pred hhCCCcceeEEeeeeeec
Q 016087 338 IAASSLSIFKYSGDVISF 355 (395)
Q Consensus 338 ~~~~~L~~L~~~~~~~~~ 355 (395)
.++++|+.|++++|+++.
T Consensus 442 ~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhccCCCeEECCCCCCCc
Confidence 457788888888887653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.44 E-value=9.7e-07 Score=90.68 Aligned_cols=197 Identities=20% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+-..|++... ....+|..+. ++|+.|.+.++.+. .|. ..++|++|+|++|.++. +. ...++|+.|++
T Consensus 201 ~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--cc---Ccccccceeec
Confidence 34444544332 3345665543 35677777766554 222 24667777777766531 11 11345666666
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccc----------------c-ccccccce
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFN----------------L-ASCKFLKY 278 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~----------------~-~~~~~L~~ 278 (395)
..|... .+.. ..++|+.|.+.++. +..+....|+|+.|+++++....++.. + ....+|+.
T Consensus 270 s~N~L~-~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~ 346 (788)
T PRK15387 270 FSNPLT-HLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQE 346 (788)
T ss_pred cCCchh-hhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccce
Confidence 555311 1100 11244444444442 222222234444444444432111110 0 01135666
Q ss_pred eEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeee
Q 016087 279 LRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
|+|++|.++. +....++|+.|+++++. +..+.....+|+.|+++++ .+..++...++|+.|++++|.+.
T Consensus 347 LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 347 LSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLT 415 (788)
T ss_pred EecCCCccCC-----CCCCCcccceehhhccc-cccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCC
Confidence 6666665442 11123455566555432 2222222346677777543 33344444456677777766653
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=2.3e-07 Score=84.01 Aligned_cols=174 Identities=21% Similarity=0.181 Sum_probs=118.1
Q ss_pred CCCCCcEEEeeeeec---ChHHHHHHHcCCCCccEEeeecCCCC---------------ceEeeCCCCCcceEEecccc-
Q 016087 181 KLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGL---------------KNLELSGLTKLNKFEVCDAE- 241 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~---------------~~~~i~~~~~L~~L~i~~c~- 241 (395)
.+|+|++|+|++|-+ ....+..++++|..|+.|.|.+|... ..-.+.+.++|+.+....+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 456777777777766 34467788888999999999888532 01123455799999888775
Q ss_pred -c-----cchhhccCCceeEEEEeCCCCcc--c---ccccccccccceeEecccccchH---HHHHHhccCCCccEEEee
Q 016087 242 -E-----LQRLCIIAQDVQEVSIQGPLPFQ--C---KFNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIA 307 (395)
Q Consensus 242 -~-----l~~l~~~~p~L~~L~l~~~~~~~--~---~~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~ 307 (395)
+ +.......|.|+.+.+..+...+ + .-.+..|++|+.|+|..|.++.. .+...++.+|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 1 12222356899999987765321 2 22367799999999999887654 344556778899999999
Q ss_pred CCCCC--------chhccCCCccCEEecccCCC-ch------hhhhhCCCcceeEEeeeeee
Q 016087 308 GCDDL--------KSINISSRSLKLLEIYDCLR-LV------EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 308 ~~~~l--------~~~~~~~~~Lk~L~L~~~~~-l~------~l~~~~~~L~~L~~~~~~~~ 354 (395)
+|-.- ..+....|+|+.|.+.++.- .. ......|.|+.|++.||...
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 98421 22334568999999875431 11 11134799999999999873
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.37 E-value=8.8e-08 Score=62.66 Aligned_cols=37 Identities=30% Similarity=0.631 Sum_probs=31.3
Q ss_pred cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhccc
Q 016087 21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT 57 (395)
Q Consensus 21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~ 57 (395)
|.+||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.31 E-value=5.1e-07 Score=92.95 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=100.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+++.|++... ....+|..+. ++|+.|++++|.+. .|.. -.++|+.|+|++|.+.. +...+ ...|+.|++
T Consensus 199 ~~L~~L~Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITE--LPERL--PSALQSLDL 269 (754)
T ss_pred cCCcEEEecCC--CCCcCChhhc--cCCCEEECCCCccccCChh-hhccccEEECcCCccCc--CChhH--hCCCCEEEC
Confidence 46677776543 2345565443 47777777777665 2222 13467777777776621 11111 235666666
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhc----------------------cCCceeEEEEeCCCCcccccccccc
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI----------------------IAQDVQEVSIQGPLPFQCKFNLASC 273 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~----------------------~~p~L~~L~l~~~~~~~~~~~~~~~ 273 (395)
++|. +..+.-.-.++|+.|++++|. +..+.. ..++|++|.++++....++.. ..
T Consensus 270 s~N~-L~~LP~~l~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~--l~ 345 (754)
T PRK15370 270 FHNK-ISCLPENLPEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPAS--LP 345 (754)
T ss_pred cCCc-cCccccccCCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChh--hc
Confidence 6553 211111112356666666553 211111 224566666655542222211 13
Q ss_pred cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCC-CccCEEecccCC--Cch----hhhhhCCCccee
Q 016087 274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLV----EVKIAASSLSIF 346 (395)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~~~~--~l~----~l~~~~~~L~~L 346 (395)
++|+.|++++|.++. +... ..++|+.|+|++|. +..+.... +.|+.|+++++. .++ .+...++.+..|
T Consensus 346 ~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 346 PELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred CcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEE
Confidence 567777777766542 1111 12567777777664 33332222 356667766532 111 222345788888
Q ss_pred EEeeeeee
Q 016087 347 KYSGDVIS 354 (395)
Q Consensus 347 ~~~~~~~~ 354 (395)
++.+|+++
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 89888864
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.30 E-value=2e-07 Score=92.42 Aligned_cols=210 Identities=24% Similarity=0.242 Sum_probs=126.3
Q ss_pred CCCcEEEEEecCC-CcccccccccCCCCccEEEEcce-ecc-------CCCccCCCCCcEEEeeeee-cChHHHHHHHcC
Q 016087 137 CNVKELSLELLGN-PRFNLPEIILCSNSIEILTLAGL-KLE-------SPRSVKLSSLTKLFLMRVD-ATDLVLQSLLIG 206 (395)
Q Consensus 137 ~~l~~L~l~~~~~-~~~~l~~~l~~~~~L~~L~L~~~-~~~-------~~~~~~~~~Lk~L~L~~~~-~~~~~l~~l~~~ 206 (395)
++++.+.+..+.. ....+-.....|++|+.|++++| ... ......+++|+.|++.++. +++..+..+...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 6777777655332 22223345567889999999873 221 1122367999999999998 588889988888
Q ss_pred CCCccEEeeecCCCCceEee----CCCCCcceEEeccccc-----cchhhccCCceeEEEEeCCCC--------------
Q 016087 207 CPLIEYLSLQLCPGLKNLEL----SGLTKLNKFEVCDAEE-----LQRLCIIAQDVQEVSIQGPLP-------------- 263 (395)
Q Consensus 207 ~p~Le~L~l~~c~~~~~~~i----~~~~~L~~L~i~~c~~-----l~~l~~~~p~L~~L~l~~~~~-------------- 263 (395)
||+|+.|.+.+|..++...+ ..+++|++|++..|.. +..+...+|+|+.|.+.+...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 99999999888876432222 2567899999998873 333344677777766544321
Q ss_pred ----cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCch--hhh
Q 016087 264 ----FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLV--EVK 337 (395)
Q Consensus 264 ----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~--~l~ 337 (395)
.........+++|+++.+..+...+.....++.+||+|. ..+..+ ...+.+++.|.+..|.... .+.
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCccccccchH
Confidence 011122344666666666665544434344555666552 221111 1112337788887776554 111
Q ss_pred ---hhCCCcceeEEeeeee
Q 016087 338 ---IAASSLSIFKYSGDVI 353 (395)
Q Consensus 338 ---~~~~~L~~L~~~~~~~ 353 (395)
..|.+++.+++.++..
T Consensus 421 ~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred HHhhhhhccccCCccCccc
Confidence 2277788888877754
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.30 E-value=1.8e-06 Score=89.07 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+...+++.. .....+|..+. ++|+.|+|+++.+. .|.. .+++|++|++++|.++. +...+ .+.|+.|++
T Consensus 178 ~~~~~L~L~~--~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKI--LGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCC--CCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence 4555666643 33456676543 57999999998876 3332 34799999999998742 11111 357999999
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 287 (395)
++|... .+...-..+|+.|+++++ .+..+.. ..++|+.|+++++....++..+ .++|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc
Confidence 998543 222122348999999866 4444432 2358999999987633222211 135566666555443
No 25
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.26 E-value=5.5e-07 Score=56.57 Aligned_cols=34 Identities=38% Similarity=0.648 Sum_probs=31.3
Q ss_pred CCHHHHHHHhcCCCcccchhhhhhhhhhhhhccc
Q 016087 24 LPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT 57 (395)
Q Consensus 24 LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~ 57 (395)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=1.8e-06 Score=72.85 Aligned_cols=125 Identities=20% Similarity=0.118 Sum_probs=38.0
Q ss_pred CCCccEEEEcceeccCCCcc--CCCCCcEEEeeeeecC-hHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087 161 SNSIEILTLAGLKLESPRSV--KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~~~--~~~~Lk~L~L~~~~~~-~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i 237 (395)
+.+++.|+|.++.+..-... .+.+|+.|+|++|.+. -++ +..++.|++|+++++...
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~---------------- 77 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRIS---------------- 77 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS-------------------
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCC----------------
Confidence 34556666666655411111 3556666666666552 111 222444455555444211
Q ss_pred ccccccch-hhccCCceeEEEEeCCCCccc--ccccccccccceeEecccccchH--HHHHHhccCCCccEEEeeCC
Q 016087 238 CDAEELQR-LCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 238 ~~c~~l~~-l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L~L~~~ 309 (395)
.+.. +...+|+|+.|.++++....+ ...+..+++|+.|+|.+|.+... --..++..+|+|+.|+-...
T Consensus 78 ----~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 78 ----SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ----ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 1211 222467777777776653221 22355677888888877765432 22345567788877765543
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.19 E-value=2.2e-07 Score=93.74 Aligned_cols=215 Identities=20% Similarity=0.180 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecCh--HH-----
Q 016087 129 QCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATD--LV----- 199 (395)
Q Consensus 129 ~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~--~~----- 199 (395)
.|+..+ .+++.+..... ....+|..++...+|+.|....|.+. .+ ....+..|++|+|..+.+.. +.
T Consensus 258 ~wi~~~--~nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 258 EWIGAC--ANLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL 333 (1081)
T ss_pred HHHHhc--ccceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhh
Confidence 454443 24444444321 12344444444455555555555544 22 23358888888888887721 11
Q ss_pred ---HHHHHcCCCCcc--------------EEeeecCCCC-ceE-eeCCCCCcceEEecccc--ccchhh-ccCCceeEEE
Q 016087 200 ---LQSLLIGCPLIE--------------YLSLQLCPGL-KNL-ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVS 257 (395)
Q Consensus 200 ---l~~l~~~~p~Le--------------~L~l~~c~~~-~~~-~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~ 257 (395)
+..+-..+..|+ .|.+.++.-- ..+ .+.+...||.|.++.+. .++.-. ...+.|+.|.
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 111111222222 2222222111 001 12345688888888773 233332 2667888888
Q ss_pred EeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhcc----CCCccCEEecccCCCc
Q 016087 258 IQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCLRL 333 (395)
Q Consensus 258 l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~----~~~~Lk~L~L~~~~~l 333 (395)
++|+.-..++..+..++.|++|...+|.+. .+. -+..++.|+.++++ |.++..+.. +-|+||+|++++...+
T Consensus 414 LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 414 LSGNKLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cccchhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence 888875555666677788888888777654 222 34567888888887 444443322 2278888888866543
Q ss_pred h---hhhhhCCCcceeEEeee
Q 016087 334 V---EVKIAASSLSIFKYSGD 351 (395)
Q Consensus 334 ~---~l~~~~~~L~~L~~~~~ 351 (395)
. +....+.++..+++.-+
T Consensus 490 ~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 490 VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhHHhhhhhheecccC
Confidence 3 22334555555554433
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=1.3e-06 Score=79.28 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred cCCceeEEEEeCCCCc-----ccccccccccccceeEecccccchHHHH----HHhccCCCccEEEeeCCC
Q 016087 249 IAQDVQEVSIQGPLPF-----QCKFNLASCKFLKYLRFALTHIKDEWLC----NQISKFPLLESLLIAGCD 310 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~ 310 (395)
.+|+|+.|++.++... .+...++..++|+.|+++.|.+.+.... .+-...|+|+.|.+.++.
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 4556666665554311 0111234455666666666554443222 222335666666666553
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.05 E-value=8e-07 Score=88.05 Aligned_cols=129 Identities=23% Similarity=0.246 Sum_probs=89.2
Q ss_pred CCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecC-CCCce------EeeCCCCCcceEEeccccc-----cchhh
Q 016087 181 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC-PGLKN------LELSGLTKLNKFEVCDAEE-----LQRLC 247 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c-~~~~~------~~i~~~~~L~~L~i~~c~~-----l~~l~ 247 (395)
.+++|+.|.+..+.. ++..+..+...||+|++|++.+| ..... .....+++|++|+++.|.. +..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888866 66667888888999999999873 22211 1123457888888888763 33333
Q ss_pred ccCCceeEEEEeCCCC---cccccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCC
Q 016087 248 IIAQDVQEVSIQGPLP---FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 248 ~~~p~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
..+|+|+.|.+.++.. ..+......+++|++|+++++. +++..+..+...|++|+.|.+..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 4578888888766652 2233445668889999998876 556667777777888888765554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=1.8e-06 Score=72.81 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=25.3
Q ss_pred cccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchh--ccCCCccCEEecccCC-----Cch-hhhhhCC
Q 016087 272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSI--NISSRSLKLLEIYDCL-----RLV-EVKIAAS 341 (395)
Q Consensus 272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~--~~~~~~Lk~L~L~~~~-----~l~-~l~~~~~ 341 (395)
.++.|+.|++++|.++.-. ..+...+|+|++|+++++. ++..+ ...+|+|+.|+|.+.. ..- .+...+|
T Consensus 62 ~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp --TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 3455555555555544311 1122345566666555532 11111 1235666666665322 111 3346688
Q ss_pred CcceeEEee
Q 016087 342 SLSIFKYSG 350 (395)
Q Consensus 342 ~L~~L~~~~ 350 (395)
+|+.|+-..
T Consensus 141 ~Lk~LD~~~ 149 (175)
T PF14580_consen 141 SLKVLDGQD 149 (175)
T ss_dssp T-SEETTEE
T ss_pred hhheeCCEE
Confidence 888877544
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=3.5e-06 Score=86.06 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=71.2
Q ss_pred CCcceEEecccc-----ccchhhccCCceeEEEEeCCC--CcccccccccccccceeEecccccchHHHHHHhccCCCcc
Q 016087 230 TKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPL--PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLE 302 (395)
Q Consensus 230 ~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 302 (395)
.+|++|++.+-. ....+....|+|++|.++|.. ..++.....++|+|..||+++..+++- .-++.++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 466666666533 334445567777777777754 222333455677777777777766532 3445667777
Q ss_pred EEEeeCCCCCc--hh--ccCCCccCEEecccCCCch---------hhhhhCCCcceeEEeeeeeecc
Q 016087 303 SLLIAGCDDLK--SI--NISSRSLKLLEIYDCLRLV---------EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 303 ~L~L~~~~~l~--~~--~~~~~~Lk~L~L~~~~~l~---------~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
.|.+.+.+-.. .+ .....+|+.|+|+..+... +....+|+|+.|+++|+.+..+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 77666643221 11 1235777777777433222 1113478888888887766433
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=9e-06 Score=72.45 Aligned_cols=190 Identities=17% Similarity=0.087 Sum_probs=136.8
Q ss_pred CCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCCC---ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~---~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
..+++++|... -..+..+...+-++|.|+.|+|+.+.+..+. +....+|++|.|.+...+......++...|.+.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 58899998542 2234555555667999999999998886321 1478899999999999999999999999999999
Q ss_pred EeeecCCC----CceEeeCC-CCCcceEEecccc-----ccchhhccCCceeEEEEeCCCCccc--ccccccccccceeE
Q 016087 213 LSLQLCPG----LKNLELSG-LTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLR 280 (395)
Q Consensus 213 L~l~~c~~----~~~~~i~~-~~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~ 280 (395)
|+++.+.. .+.-.+.. -+.++.|....|. +...+.-..||+.++.+..++.... .-.....|.+-.|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 99988732 12223322 2478888888886 3344445689999999988763221 22244567777899
Q ss_pred ecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---------cCCCccCEEe
Q 016087 281 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---------ISSRSLKLLE 326 (395)
Q Consensus 281 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---------~~~~~Lk~L~ 326 (395)
|+.+.+...+....+.+||.|..|.+.+.+-.+.+. ...++++.|.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 999988887778888999999999999876554322 2346666664
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=85.94 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=103.7
Q ss_pred CCccEEEEcceecc---C--CCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087 162 NSIEILTLAGLKLE---S--PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 236 (395)
Q Consensus 162 ~~L~~L~L~~~~~~---~--~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~ 236 (395)
.+|++|+++|...- . ..+.-||+|++|.+.+..+..+.+..+..++|+|..|+|+++....-.-++.+.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 46888888774332 1 123369999999999999966668889999999999999998543323445667777777
Q ss_pred ecccc-----ccchhhccCCceeEEEEeCCCCcccc-c------ccccccccceeEecccccchHHHHHHhccCCCccEE
Q 016087 237 VCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQCK-F------NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL 304 (395)
Q Consensus 237 i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~~-~------~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 304 (395)
+.+-+ .+.. .....+|+.|++|........ + .-..+|+|+.|+.++..++.+.+..+...-|+|+..
T Consensus 202 mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 76543 1111 136788999999876522211 1 123489999999999999888888888877888877
Q ss_pred EeeCC
Q 016087 305 LIAGC 309 (395)
Q Consensus 305 ~L~~~ 309 (395)
.+.+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 65543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.67 E-value=2.2e-05 Score=70.14 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=115.8
Q ss_pred CCCCccEEEEcceecc----------CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-------
Q 016087 160 CSNSIEILTLAGLKLE----------SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL------- 221 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~~----------~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~------- 221 (395)
-|.+|+.|..++..-. .+ ..-.|.+|+.+.++.|. .+.+..+...=|.|.++.+......
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccccccccccc
Confidence 4677888887764211 11 11157788888887775 3444455555677777777553211
Q ss_pred ------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEe
Q 016087 222 ------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRF 281 (395)
Q Consensus 222 ------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L 281 (395)
....+.....|+.++++.+. .+..-.-.+|.++.|.++.+....+. ++..+++|++|+|
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDL 336 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeec
Confidence 00112223467777777663 22233346788888888887633222 3677889999999
Q ss_pred cccccchHHHHHHhccCCCccEEEeeCCCCCchhc--cCCCccCEEecccCC--Cchhh--hhhCCCcceeEEeeeeee
Q 016087 282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCL--RLVEV--KIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~~~--~l~~l--~~~~~~L~~L~~~~~~~~ 354 (395)
++|.++ .+..+-..+.|+++|.++++. ++.+. ...-+|.+|++.+.. .+.++ ++++|.||.+.+.+|++.
T Consensus 337 S~N~Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 337 SGNLLA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccchhH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 888754 233444567888888888753 22221 123567888886432 34443 367999999999999863
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.66 E-value=9.7e-07 Score=72.35 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=70.5
Q ss_pred cccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-ceEeeCCCCCcc
Q 016087 157 IILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-KNLELSGLTKLN 233 (395)
Q Consensus 157 ~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-~~~~i~~~~~L~ 233 (395)
.+++..+++.|.|+++.+. +|....+.+|+.|++.++.+. .+..-+++.|+|+.|++..+... -.--..++|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 3455566666666665554 233335666666666666542 12233455555665555543211 000123344555
Q ss_pred eEEecccc----ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 234 KFEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 234 ~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
.|++.... .++.=.+.+..|+.|+++++....++..++.+.+|+.|.+..+++. .+..-++.+..|+.|.+.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccc
Confidence 55554432 0111111233344555555544334455566666666666655422 11222344555666666554
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=5.5e-05 Score=67.58 Aligned_cols=191 Identities=13% Similarity=0.016 Sum_probs=119.8
Q ss_pred CccEEEEcceeccCCC-----ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEe-e-CCCCCcce
Q 016087 163 SIEILTLAGLKLESPR-----SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLE-L-SGLTKLNK 234 (395)
Q Consensus 163 ~L~~L~L~~~~~~~~~-----~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~-i-~~~~~L~~ 234 (395)
-+.-|.+-+|.+...+ +..+..++.|+|.+|.+ ++..+..++.+.|.|+.|+++.+.-...+. . ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3455556666655221 12678899999999999 777899999999999999999886432111 1 12348999
Q ss_pred EEecccc----ccchhhccCCceeEEEEeCCCCccccc----ccccccccceeEecccc-cchHHHHHHhccCCCccEEE
Q 016087 235 FEVCDAE----ELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLL 305 (395)
Q Consensus 235 L~i~~c~----~l~~l~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~ 305 (395)
|.+.+.. ....+.-..|.++.|.++.+.-..+.+ .-...+.+++|++-.|. ..+.....+...|||+..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 9998875 344444467777777777663111111 11123577888887776 33445667778899999999
Q ss_pred eeCCCCCch----hccCCCccCEEecc--cCCCch--hhhhhCCCcceeEEeeeee
Q 016087 306 IAGCDDLKS----INISSRSLKLLEIY--DCLRLV--EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 306 L~~~~~l~~----~~~~~~~Lk~L~L~--~~~~l~--~l~~~~~~L~~L~~~~~~~ 353 (395)
+..|+.=+. -...+|.+--|.|. +..++. .-....|.|..|.+.++++
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 998852111 11123444444443 111222 2234577888888888875
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.62 E-value=1.6e-05 Score=71.02 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=95.3
Q ss_pred CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEe
Q 016087 182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQ 259 (395)
Q Consensus 182 ~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~ 259 (395)
...|++|+|++|.++. ++....-.|.++.|+++++....--.+..+++|++|+++++. .+.......-|+++|.++
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4678999999998732 333345579999999999865432235567899999999885 444455678899999999
Q ss_pred CCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 260 GPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
++..... --++.+-+|..|++.+|.+..-.-..-++.+|.|+++.+.+++
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8763221 1255678999999999998876667778999999999999875
No 38
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.50 E-value=1.2e-05 Score=81.62 Aligned_cols=202 Identities=16% Similarity=0.101 Sum_probs=110.4
Q ss_pred CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.++.+.+.. +....+|..+...++|++|.|.++.+. .|... .+.+|+.|+++.+.++.-.+ .+..+..++.+..
T Consensus 69 ~L~~ln~s~--n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl--~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 69 HLRQLNLSR--NYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPL--VIEVLTAEEELAA 144 (1081)
T ss_pred HHhhcccch--hhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCch--hHHhhhHHHHHhh
Confidence 445555432 223556666667777888888777665 33333 67788888888888743322 2444666666767
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeE-EEEeCCCCcccccccccccccceeEecccccchHHHHHH
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQE-VSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQ 294 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~-L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 294 (395)
+++.....+ .. ..++++++........+.+..-+++. +++..+.-. ...+..+++|+.|+...+.+.. +
T Consensus 145 s~N~~~~~l--g~-~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-----l 214 (1081)
T KOG0618|consen 145 SNNEKIQRL--GQ-TSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-----L 214 (1081)
T ss_pred hcchhhhhh--cc-ccchhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhhccchhhhhhhhcccce-----E
Confidence 666222111 11 12444444433323333333344444 555554321 3345556677776666554332 2
Q ss_pred hccCCCccEEEeeCCCCCchhccCC-CccCEEecc--cCCCchhhhhhCCCcceeEEeeeee
Q 016087 295 ISKFPLLESLLIAGCDDLKSINISS-RSLKLLEIY--DCLRLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 295 ~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~--~~~~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
--.-++|+.|+.+.|+..+.....- .+|++++++ +..++++....|++|+.++..++.+
T Consensus 215 ~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 215 EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 2234677777777766443222222 367777776 3445566667777777777777654
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.48 E-value=1.1e-06 Score=81.02 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=63.9
Q ss_pred ceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEeccc
Q 016087 252 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYD 329 (395)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~ 329 (395)
+|+-|++..+....++ .+++|..|+.|+++.+.+.. ...+....++.|..|++.+.+ .+..-.+...+|++|++++
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence 4444455544433333 67788888888888876542 334556678888899988864 2333333457889999985
Q ss_pred C--CCchhhhhhCCCcceeEEeeeee
Q 016087 330 C--LRLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 330 ~--~~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
. .+++.-.+++ +|.+|.+.|+++
T Consensus 285 N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 285 NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CccccCCcccccc-eeeehhhcCCch
Confidence 3 2444444566 788888999986
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.24 E-value=1.1e-05 Score=66.21 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=85.5
Q ss_pred cccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS- 227 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~- 227 (395)
...+|..+....+|+.|++.++.+. .| ....+++|++|++.-++.. .+..=++++|.||.|++.++......--.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccccCCcc
Confidence 3455666777888888888888776 33 3347888888888877651 11222567888888888887432111111
Q ss_pred --CCCCcceEEeccccccchhh---ccCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087 228 --GLTKLNKFEVCDAEELQRLC---IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 228 --~~~~L~~L~i~~c~~l~~l~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 287 (395)
.+..|+.|.+++.. +..+. -...+|+.|.+..+.-...+-.++.+..|+.|++.++.++
T Consensus 123 ff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 23466777777663 22222 2445666666666654445666788899999999998754
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.24 E-value=0.001 Score=63.28 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 260 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~ 260 (395)
.+++++.|+++.|.+.. +. .--+.|++|.+.+|..+..+.-.-.++|++|.+.+|..+.. ..++|+.|.+.+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s---LP~sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG---LPESVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc---cccccceEEeCC
Confidence 46778888888775421 11 11235888888887765332211134788888887764443 245677777765
Q ss_pred CCCccccccccc-ccccceeEecccccchHHHHHHhccC-CCccEEEeeCCCCCchhccCCCccCEEeccc
Q 016087 261 PLPFQCKFNLAS-CKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYD 329 (395)
Q Consensus 261 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~ 329 (395)
..... ++. .++|+.|.+.++... ....+...+ ++|+.|.+.+|..+..-..--.+|+.|.++.
T Consensus 122 n~~~~----L~~LPssLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 122 SATDS----IKNVPNGLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred CCCcc----cccCcchHhheeccccccc--cccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 43211 222 246777777543211 001111123 4788888888875532111125788888864
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=7e-05 Score=74.44 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=120.9
Q ss_pred ccceEEEEEecCCCcCCCchhHHHHHHH-HHhCCCcEEEEEecC-CCcccccccccCCCCccEEEEcceeccCCC-----
Q 016087 106 IRLMNFSLFVPGDSLEICLPYIDQCIFY-ALGCNVKELSLELLG-NPRFNLPEIILCSNSIEILTLAGLKLESPR----- 178 (395)
Q Consensus 106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~-~~~~~l~~L~l~~~~-~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~----- 178 (395)
..++.|+...... .+...+.+.-.. -+-...+.+.+.... ..+.. |-.++.++.|++|.|.+|.+.-..
T Consensus 55 ~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 55 APVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred CCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHH
Confidence 5677777665432 222333332211 122456666654422 22333 667888999999999998654111
Q ss_pred -----------------------------ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCC
Q 016087 179 -----------------------------SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGL 229 (395)
Q Consensus 179 -----------------------------~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~ 229 (395)
+.....|.+.++++|.. ..++..+.-.|.|+.|+|+.+...+.-.+.-+
T Consensus 131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l 208 (1096)
T KOG1859|consen 131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRL 208 (1096)
T ss_pred HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhc
Confidence 11223444455555554 11122233357788888888865433355667
Q ss_pred CCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087 230 TKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 230 ~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
+.|++|+++.+. .++.+.....+|.-|.+.++.-.. ...+.++.+|..|++++|-+.+..-...+..+..|..|.|.
T Consensus 209 ~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred ccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 899999998765 566666666668888888876322 12355678899999988877766555566667788888888
Q ss_pred CCC
Q 016087 308 GCD 310 (395)
Q Consensus 308 ~~~ 310 (395)
+++
T Consensus 288 GNP 290 (1096)
T KOG1859|consen 288 GNP 290 (1096)
T ss_pred CCc
Confidence 854
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.12 E-value=0.004 Score=65.82 Aligned_cols=261 Identities=18% Similarity=0.182 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCC
Q 016087 84 KQKLREIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNS 163 (395)
Q Consensus 84 ~~~~~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~ 163 (395)
.....-+.+.|++.|......-.+.....++ .-.-.+..|++......-+..-.. .+.+....|.. .+...
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~~iv~-~~~~~~~~~~~-~~~~~ 524 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEENQIVS-DGVGLSEIPQV-KSWNS 524 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccceEEE-CCcCccccccc-cchhh
Confidence 3445667777777775433210022233222 111344455555433333331111 11223334432 23456
Q ss_pred ccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecc
Q 016087 164 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCD 239 (395)
Q Consensus 164 L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~ 239 (395)
.++..+.++.+. .+....+++|++|-+.++.. -......++...|.|+.|++++|.....+ .|+.+-+|+.|++++
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 777777776665 55666788999999998862 11112234667999999999998766433 456677999999988
Q ss_pred ccccchhhc---cCCceeEEEEeCCCCcc-cccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCC--
Q 016087 240 AEELQRLCI---IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDL-- 312 (395)
Q Consensus 240 c~~l~~l~~---~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l-- 312 (395)
+. +..+.. ....|.+|++..+.... ++.....+++|++|.+.... ..+.....-+..+.+|+.|++......
T Consensus 605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~ 683 (889)
T KOG4658|consen 605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL 683 (889)
T ss_pred CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence 84 333332 34466677776554222 22334458899999987664 233333444466677777777554320
Q ss_pred chhccCCCccCEE----ecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087 313 KSINISSRSLKLL----EIYDCL--RLVEVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 313 ~~~~~~~~~Lk~L----~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~ 355 (395)
+.+ ....+|..+ .+..+. .........++|++|.+.++.+..
T Consensus 684 e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 684 EDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 111 122333322 221211 111333567888888888887643
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00011 Score=77.30 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=46.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 214 (395)
+.++.|+++. .....+||..++.+-+|++|++++..+. .|... .+..|.+|++..+..-. .+..+....++|++|.
T Consensus 571 ~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR 648 (889)
T ss_pred cceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence 4555555543 2335667777777777777777776665 33333 66677777766655311 1133344466777777
Q ss_pred eecC
Q 016087 215 LQLC 218 (395)
Q Consensus 215 l~~c 218 (395)
+..-
T Consensus 649 l~~s 652 (889)
T KOG4658|consen 649 LPRS 652 (889)
T ss_pred eecc
Confidence 7553
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.05 E-value=6.7e-06 Score=76.08 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCcccccccccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEee
Q 016087 149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL 226 (395)
Q Consensus 149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i 226 (395)
+...++|..++.|.+|..|.+.++.+. ++...++..|++|+...+.. ..+..-+++...|+.|++..+....-..+
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef 224 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEF 224 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCC
Confidence 345667777777777777777776654 33333577777777766654 12222345556666666666644322344
Q ss_pred CCCCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087 227 SGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES 303 (395)
Q Consensus 227 ~~~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 303 (395)
.+|..|+.|.++... .++.-.. +.++|..|++.++...+++..+.-+.+|..|+++++.++. +.--++++ +|+.
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKF 301 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeee
Confidence 455555555555442 1111111 4455566666555544445545555566666666655442 12222333 4555
Q ss_pred EEeeCC
Q 016087 304 LLIAGC 309 (395)
Q Consensus 304 L~L~~~ 309 (395)
|.+.+.
T Consensus 302 L~leGN 307 (565)
T KOG0472|consen 302 LALEGN 307 (565)
T ss_pred hhhcCC
Confidence 555543
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.85 E-value=0.00028 Score=65.47 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHhccCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCCch----hhhhhCCCcceeEEeeeeeeccee
Q 016087 291 LCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLV----EVKIAASSLSIFKYSGDVISFQLG 358 (395)
Q Consensus 291 ~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~l~----~l~~~~~~L~~L~~~~~~~~~~~~ 358 (395)
...-+.++|+|++|++++.+ ++.+. .....++.|.|... ++. .+..+...|++|++++|+++.-..
T Consensus 266 P~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 33446777888888888764 32222 23356677776532 233 334678888999999988755443
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.84 E-value=0.0029 Score=60.31 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=95.3
Q ss_pred cCCCCccEEEEcceecc-CCCccCCC-CCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087 159 LCSNSIEILTLAGLKLE-SPRSVKLS-SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 236 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~-~~~~~~~~-~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~ 236 (395)
..|+++++|++++|.+. .| .+| +|++|.+++|.- -..+...+ .+.|+.|++.+|..+.. -.++|+.|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~n-LtsLP~~L--P~nLe~L~Ls~Cs~L~s----LP~sLe~L~ 118 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP---VLPNELTEITIENCNN-LTTLPGSI--PEGLEKLTVCHCPEISG----LPESVRSLE 118 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCC-cccCCchh--hhhhhheEccCcccccc----cccccceEE
Confidence 34788999999999765 34 344 699999988653 11111112 36899999999965431 124889999
Q ss_pred eccccccchhhccCCceeEEEEeCCC-CcccccccccccccceeEecccccchHHHHHHhccC-CCccEEEeeCCC--CC
Q 016087 237 VCDAEELQRLCIIAQDVQEVSIQGPL-PFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCD--DL 312 (395)
Q Consensus 237 i~~c~~l~~l~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~--~l 312 (395)
+... ....+..-.++|+.|.+.+.. .........-.++|++|++.+|.... +...+ ..|+.|+++.+. .+
T Consensus 119 L~~n-~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 119 IKGS-ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-----LPEKLPESLQSITLHIEQKTTW 192 (426)
T ss_pred eCCC-CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-----CcccccccCcEEEecccccccc
Confidence 8643 333444456788999885432 11001111123689999999886331 22333 489999997642 22
Q ss_pred chhccCC-CccCEEecccCCCc
Q 016087 313 KSINISS-RSLKLLEIYDCLRL 333 (395)
Q Consensus 313 ~~~~~~~-~~Lk~L~L~~~~~l 333 (395)
+...... +++ .|.+.+|..+
T Consensus 193 eI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 193 NISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cCccccccccc-Eechhhhccc
Confidence 2222222 466 7777776544
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.83 E-value=0.00099 Score=45.68 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=29.5
Q ss_pred CceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 251 QDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
|+|++|.++++....++ ..+..+++|++|+++++.+.. .....+..+++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence 44555555555422222 234556666666666655432 11234555666666666554
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00029 Score=61.95 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=71.5
Q ss_pred cccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCc--eE-eeC
Q 016087 153 NLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLK--NL-ELS 227 (395)
Q Consensus 153 ~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~-~i~ 227 (395)
++....-....|+.|++.++.+. ......+|+||+|.++.+.+ ....+..++..||+|.+|+++++..-. ++ ...
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred CcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 34433334667888888887766 33444789999999999966 455677778888999999999985421 11 223
Q ss_pred CCCCcceEEecccc--cc----chhhccCCceeEEEEeCCC
Q 016087 228 GLTKLNKFEVCDAE--EL----QRLCIIAQDVQEVSIQGPL 262 (395)
Q Consensus 228 ~~~~L~~L~i~~c~--~l----~~l~~~~p~L~~L~l~~~~ 262 (395)
.+.+|..|.+..|. ++ ..+...+|+|++|+-....
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 45677888888775 11 1122256666666554433
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.71 E-value=0.0026 Score=56.48 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=58.8
Q ss_pred hhHHHHHHHH-HhCCCcEEEEEecCCC---cccccccccCCCCccEEEEcceecc-------------CCCccCCCCCcE
Q 016087 125 PYIDQCIFYA-LGCNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLE-------------SPRSVKLSSLTK 187 (395)
Q Consensus 125 ~~~~~~l~~~-~~~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~-------------~~~~~~~~~Lk~ 187 (395)
.++...+... +...+.+++|+....+ ...+...+.+-++|+..+++..... .+....||.|++
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 4555555543 3477888888653322 1233334445567777777763221 122237888888
Q ss_pred EEeeeeec---ChHHHHHHHcCCCCccEEeeecCC
Q 016087 188 LFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 188 L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
.+|++|-| ....+..+++....|+.|.+.+|.
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 88888887 334566677777888888888774
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.54 E-value=0.0052 Score=42.03 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=31.2
Q ss_pred CcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcccc-cccccccccceeEecccc
Q 016087 231 KLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTH 285 (395)
Q Consensus 231 ~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~ 285 (395)
+|+.|.+.+|. .+..-. ..+++|++|+++++....++ ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555542 222111 24677777777766533322 246677888888887775
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.53 E-value=0.0013 Score=63.61 Aligned_cols=166 Identities=20% Similarity=0.190 Sum_probs=87.4
Q ss_pred cCCCCccEEEEcceecc-CCCcc-CC-CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeC-CCCCcce
Q 016087 159 LCSNSIEILTLAGLKLE-SPRSV-KL-SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELS-GLTKLNK 234 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~-~~~~~-~~-~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~~~~L~~ 234 (395)
...+.++.|.+.++.+. .+... .+ ++|+.|+++++.+..- ..-+..+|.|+.|++..|....-.... ..++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 33456777777776655 33333 33 2788888888776321 123566777888888777543222222 4456777
Q ss_pred EEeccccccchhhc---cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCC
Q 016087 235 FEVCDAEELQRLCI---IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDD 311 (395)
Q Consensus 235 L~i~~c~~l~~l~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 311 (395)
|++++.. +..+.. ...+|+++.++++........+....++..+.+..+.+.+- ......+++++.|++.++..
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccc
Confidence 7777663 333322 22336666666653222233344555556665555544321 23445556666666665431
Q ss_pred Cchh-ccCCCccCEEeccc
Q 016087 312 LKSI-NISSRSLKLLEIYD 329 (395)
Q Consensus 312 l~~~-~~~~~~Lk~L~L~~ 329 (395)
-..- .....+|+.|++++
T Consensus 268 ~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 268 SSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cccccccccCccCEEeccC
Confidence 1111 22335566666653
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.38 E-value=0.0039 Score=60.28 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=84.2
Q ss_pred CCcccccccccCCC-CccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe
Q 016087 149 NPRFNLPEIILCSN-SIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE 225 (395)
Q Consensus 149 ~~~~~l~~~l~~~~-~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~ 225 (395)
.....++......+ +|+.|+++++.+. .+ ....+++|+.|+++.+.+.+ +.......+.|+.|+++++....-..
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCch
Confidence 33455565555553 7777777776665 22 33467777777777777632 22222256777777777764321111
Q ss_pred e-CCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCcc
Q 016087 226 L-SGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLE 302 (395)
Q Consensus 226 i-~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~ 302 (395)
. .....|+.|.++... ......-...++..+.+.++........++.+++++.|++..+.++.-.. +....+++
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~ 280 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLR 280 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc---ccccCccC
Confidence 1 122246667666653 11222223445555554443322223345556667777777776554221 55667777
Q ss_pred EEEeeCCC
Q 016087 303 SLLIAGCD 310 (395)
Q Consensus 303 ~L~L~~~~ 310 (395)
.|++++..
T Consensus 281 ~L~~s~n~ 288 (394)
T COG4886 281 ELDLSGNS 288 (394)
T ss_pred EEeccCcc
Confidence 77776643
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.00097 Score=58.73 Aligned_cols=103 Identities=19% Similarity=0.131 Sum_probs=49.8
Q ss_pred CCCccEEeeecCCCCceEeeCCCCCcceEEecccc-----ccchhhccCCceeEEEEeCCCCccc--cccccccccccee
Q 016087 207 CPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE-----ELQRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYL 279 (395)
Q Consensus 207 ~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~-----~l~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L 279 (395)
...|+.|++.++..........+|+|+.|.++++. .+..+...+|+|+++.++++....+ .-.+..+.+|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34444555444433222233345566666666652 4444455567777777776653211 1123345566666
Q ss_pred Eecccccch--HHHHHHhccCCCccEEEeeCC
Q 016087 280 RFALTHIKD--EWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 280 ~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~ 309 (395)
++.+|..+. +--..++.-+|.|+.|+-..+
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 665554221 111233444555555544443
No 55
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.14 E-value=0.00043 Score=64.31 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=48.0
Q ss_pred cccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch----hccCCCccCEEecccCCCch----hhhhhCC
Q 016087 270 LASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS----INISSRSLKLLEIYDCLRLV----EVKIAAS 341 (395)
Q Consensus 270 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~~~~Lk~L~L~~~~~l~----~l~~~~~ 341 (395)
+..+++|++|+|++|+++.-. ...+.+...|+.|.|...+ ++. .......|+.|+|++.. +. -......
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLF 346 (498)
T ss_pred HhhcccceEeccCCCccchhh-hhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecccccccc
Confidence 667889999999998876432 4456677778888877754 221 22344677777776532 11 1113344
Q ss_pred CcceeEEeeee
Q 016087 342 SLSIFKYSGDV 352 (395)
Q Consensus 342 ~L~~L~~~~~~ 352 (395)
.|.+|.+.+|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 55555555544
No 56
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.08 E-value=0.008 Score=33.26 Aligned_cols=25 Identities=44% Similarity=0.592 Sum_probs=22.7
Q ss_pred CCcEEEeeeeec-ChHHHHHHHcCCC
Q 016087 184 SLTKLFLMRVDA-TDLVLQSLLIGCP 208 (395)
Q Consensus 184 ~Lk~L~L~~~~~-~~~~l~~l~~~~p 208 (395)
+||+|+|..+.+ +++.+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6778999999998
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.94 E-value=0.0095 Score=37.75 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=15.2
Q ss_pred ccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 275 FLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 275 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
+|++|+++++.+++ +...++.+++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45555555555442 2222455555555555554
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.92 E-value=0.022 Score=50.76 Aligned_cols=214 Identities=17% Similarity=0.119 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHh--CCCcEEEEEe--cCCCcccccc-------cccCCCCccEEEEcceecc--CCCcc-----CCCCCc
Q 016087 125 PYIDQCIFYALG--CNVKELSLEL--LGNPRFNLPE-------IILCSNSIEILTLAGLKLE--SPRSV-----KLSSLT 186 (395)
Q Consensus 125 ~~~~~~l~~~~~--~~l~~L~l~~--~~~~~~~l~~-------~l~~~~~L~~L~L~~~~~~--~~~~~-----~~~~Lk 186 (395)
.....|+....+ ++++...++- .+....+++. .+..|++|+..+|+.+.+. .+... .-.+|+
T Consensus 44 tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~ 123 (388)
T COG5238 44 TEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLV 123 (388)
T ss_pred HHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCce
Confidence 344556665443 4555555532 2222223332 3456888998888887765 22211 567888
Q ss_pred EEEeeeeecCh---HHHH----HH-----HcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCce
Q 016087 187 KLFLMRVDATD---LVLQ----SL-----LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDV 253 (395)
Q Consensus 187 ~L~L~~~~~~~---~~l~----~l-----~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L 253 (395)
+|.+++|..+. ..+. ++ +..-|.||......+..... + . ......+ .-.+|
T Consensus 124 HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng----s--------~----~~~a~~l~sh~~l 187 (388)
T COG5238 124 HLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG----S--------K----ELSAALLESHENL 187 (388)
T ss_pred eEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC----c--------H----HHHHHHHHhhcCc
Confidence 88888887722 1111 11 23345555555444421100 0 0 0000011 11355
Q ss_pred eEEEEeCCCCcc------cccccccccccceeEecccccchHH---HHHHhccCCCccEEEeeCCC----CCchhcc---
Q 016087 254 QEVSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDEW---LCNQISKFPLLESLLIAGCD----DLKSINI--- 317 (395)
Q Consensus 254 ~~L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~----~l~~~~~--- 317 (395)
+.+.+..+...+ ....+..+.+|+.|+|..|.++-.. +...+..-++|..|.+.+|- ....+..
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 555554433111 1112345677777777776655432 22233444567777777763 1111111
Q ss_pred --CCCccCEEecccC---------CCchhhh-hhCCCcceeEEeeeeee
Q 016087 318 --SSRSLKLLEIYDC---------LRLVEVK-IAASSLSIFKYSGDVIS 354 (395)
Q Consensus 318 --~~~~Lk~L~L~~~---------~~l~~l~-~~~~~L~~L~~~~~~~~ 354 (395)
..|+|..|..... .++.++. .+.|-|..|.+.||.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 2356666655311 1122222 45777777777777653
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.91 E-value=0.0028 Score=57.56 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=36.9
Q ss_pred hccccccccCCCC----HHHHHHHhcCCCcccchhhhhhhhhhhh
Q 016087 13 ESLSHIDRISNLP----EPILHHILSFLPFTQTVQTRVLSRTWKR 53 (395)
Q Consensus 13 ~~~~~~d~is~LP----deil~~Ils~L~~~d~~r~~~vsrrWr~ 53 (395)
+++-..|.++.|| |+|...||+||+..+++.|.+|||+|++
T Consensus 67 rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 67 KPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 3444578899999 9999999999999999999999999986
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0031 Score=56.14 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=67.8
Q ss_pred CCcceEEeccccccchhhc--cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087 230 TKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 230 ~~L~~L~i~~c~~l~~l~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
.+.++|+.++| .+..+.+ .+|.|+-|.++-+.... ...+..|.+|+.|+|..|.|.+-.-...+.++|+|+.|.|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 36667777777 4555544 78999999988765322 22366789999999998887776667778999999999998
Q ss_pred CCCCCc--------hhccCCCccCEEec
Q 016087 308 GCDDLK--------SINISSRSLKLLEI 327 (395)
Q Consensus 308 ~~~~l~--------~~~~~~~~Lk~L~L 327 (395)
.++=.. .+...+|+||.|+=
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhccC
Confidence 743221 12335688888863
No 61
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.46 E-value=0.0082 Score=56.57 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=33.6
Q ss_pred cCCCCHHHHHHHhcCCC-cccchhhhhhhhhhhhhccc
Q 016087 21 ISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRAWHT 57 (395)
Q Consensus 21 is~LPdeil~~Ils~L~-~~d~~r~~~vsrrWr~lw~~ 57 (395)
|++||+|+|..|..+|+ ..|++|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 78999999999999996 78999999999999986543
No 62
>PLN03150 hypothetical protein; Provisional
Probab=95.34 E-value=0.029 Score=57.62 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred cCCceeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 249 IAQDVQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
..++|+.|+++++.. ..++..++.+++|+.|+|++|.++... ...+..+++|+.|+|+++.
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEECcCCc
Confidence 456666666666542 223434556666666666666655322 3334556666666666653
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.33 E-value=0.036 Score=47.24 Aligned_cols=59 Identities=27% Similarity=0.350 Sum_probs=32.7
Q ss_pred CCCCccEEEEcceecc-C-C-CccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCC
Q 016087 160 CSNSIEILTLAGLKLE-S-P-RSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~~-~-~-~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
..++|..|.|.++.+. . + -...+|+|+.|.|.+|++ .-.++.. +..||.|++|.+-+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 3556666666666554 1 1 122566666776666666 3334443 3446666666666654
No 64
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.19 E-value=0.01 Score=53.64 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.3
Q ss_pred cccCCCCHHHHHHHhcC-----CCcccchhhhhhhhhhhh
Q 016087 19 DRISNLPEPILHHILSF-----LPFTQTVQTRVLSRTWKR 53 (395)
Q Consensus 19 d~is~LPdeil~~Ils~-----L~~~d~~r~~~vsrrWr~ 53 (395)
+.|+.||||||..||.. ++.+++.++++|||.|+.
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 44689999999999975 467999999999999974
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0083 Score=50.99 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=45.9
Q ss_pred cccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCchhcc----CCCccCEEecccCC
Q 016087 270 LASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSINI----SSRSLKLLEIYDCL 331 (395)
Q Consensus 270 ~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~----~~~~Lk~L~L~~~~ 331 (395)
+..++.++.|.+.+|. +.+..+..+.+..|+|+.|+|++|+.++.-+. .+++|+.|.|.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4456777788888776 56666677767778999999999988876554 34788888887544
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.98 E-value=0.018 Score=36.47 Aligned_cols=33 Identities=33% Similarity=0.298 Sum_probs=16.2
Q ss_pred CCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087 184 SLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 184 ~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
+|++|+++++.+++ +...+..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45555555555532 2223455666666666665
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.70 E-value=0.05 Score=46.40 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=69.6
Q ss_pred CccEEEEcceecc-CCCccCCCCCcEEEeeeeecC--hHHHHHHHcCCCCccEEeeecCCCC---ceEeeCCCCCcceEE
Q 016087 163 SIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDAT--DLVLQSLLIGCPLIEYLSLQLCPGL---KNLELSGLTKLNKFE 236 (395)
Q Consensus 163 ~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~--~~~l~~l~~~~p~Le~L~l~~c~~~---~~~~i~~~~~L~~L~ 236 (395)
+...++|+++.+. ......++.|.+|.|+.|+++ +..+. ...|+|..|.+.++... .-....+||+|+.|+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566777777665 333447899999999999992 32333 44799999999998654 222456789999999
Q ss_pred ecccc-----ccchhhc-cCCceeEEEEeCCC
Q 016087 237 VCDAE-----ELQRLCI-IAQDVQEVSIQGPL 262 (395)
Q Consensus 237 i~~c~-----~l~~l~~-~~p~L~~L~l~~~~ 262 (395)
+.+.+ +.....+ ..|+|+.|++.+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99875 3333333 78999999998765
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.51 E-value=0.0099 Score=59.74 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=23.4
Q ss_pred ccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 271 ASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 271 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
.-++.|++|+|+.|++++-. .+..|+.|++|+|+++
T Consensus 184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence 34667777777777765432 4556777777777663
No 69
>PLN03150 hypothetical protein; Provisional
Probab=94.19 E-value=0.095 Score=53.84 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=54.8
Q ss_pred eeEEEEeCCCC-cccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecc
Q 016087 253 VQEVSIQGPLP-FQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIY 328 (395)
Q Consensus 253 L~~L~l~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~ 328 (395)
++.|+++++.. ..++..++.+++|+.|+|++|.+... +...+..+++|+.|+|+++.--. .....+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55666665542 22344566677777777777766542 23345667777777777764222 222345677777776
Q ss_pred cCCCchhhhh----hCCCcceeEEeeee
Q 016087 329 DCLRLVEVKI----AASSLSIFKYSGDV 352 (395)
Q Consensus 329 ~~~~l~~l~~----~~~~L~~L~~~~~~ 352 (395)
++.-...++. ...++..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 5532222221 12345566666654
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.0066 Score=51.58 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=55.0
Q ss_pred CccEEEEcceecc---CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcceE
Q 016087 163 SIEILTLAGLKLE---SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKF 235 (395)
Q Consensus 163 ~L~~L~L~~~~~~---~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L 235 (395)
.++.++=+++.+. .....+++.++.|.+.+|.. ++..++.+..-.|+|++|+|++|+.++.- .+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555554443 22233788888899998888 88899998888999999999999876432 22345677777
Q ss_pred Eecccc
Q 016087 236 EVCDAE 241 (395)
Q Consensus 236 ~i~~c~ 241 (395)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 777554
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.11 E-value=0.01 Score=58.02 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=71.2
Q ss_pred cccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce-EeeCCCC
Q 016087 153 NLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLT 230 (395)
Q Consensus 153 ~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~ 230 (395)
.+|..+.+...|++|+|+.+.+. .|...++--|+.|-+++++.+.- ..-++..+.|..|+.++|..... -.+..+.
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~ 189 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT 189 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence 33444555556666666665554 44444555566666666665110 01122345555666666543211 1223344
Q ss_pred CcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccc
Q 016087 231 KLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 231 ~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 287 (395)
+|+.|.+.... .+..-.. .-.|.+|+++.+....+++.+..+..|++|.|.+|.++
T Consensus 190 slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 55555555543 2222222 23377777777776667777777788888888777654
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.0044 Score=55.19 Aligned_cols=57 Identities=21% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecC
Q 016087 161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
++.|+.|.|+-+.+. ......|.+|++|.|..|.+ +-+.+.. +.+.|+|+.|-|..+
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccC
Confidence 344444444444443 22222556666666666665 3333332 455666666666654
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.72 E-value=0.032 Score=54.37 Aligned_cols=101 Identities=19% Similarity=0.086 Sum_probs=60.6
Q ss_pred ccCCCCccEEEEcceecc-CCC-ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcce
Q 016087 158 ILCSNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNK 234 (395)
Q Consensus 158 l~~~~~L~~L~L~~~~~~-~~~-~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~ 234 (395)
+..+.+|..|++.++.+. ... ...+++|++|+++++.+ +-..+. .++.|+.|++.+|...+--....+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence 455678888888887776 333 34688888888888887 333333 34458888888875443223334566666
Q ss_pred EEecccc--ccchh-hccCCceeEEEEeCCC
Q 016087 235 FEVCDAE--ELQRL-CIIAQDVQEVSIQGPL 262 (395)
Q Consensus 235 L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~ 262 (395)
++++++. .+... ....++++.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 7776664 12211 1345556666665554
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.56 E-value=0.011 Score=57.87 Aligned_cols=154 Identities=21% Similarity=0.129 Sum_probs=88.0
Q ss_pred cccccccccCCCCccEEEEcceecc-CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC-ceEeeC
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL-KNLELS 227 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~-~~~~i~ 227 (395)
...+|..+..|..|..|.|..+.+. .+ ....+..|+.|+|+.+..+.-. .-+..|| |+.|-++++... ....+.
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~lp-Lkvli~sNNkl~~lp~~ig 163 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLP--DGLCDLP-LKVLIVSNNKLTSLPEEIG 163 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCC--hhhhcCc-ceeEEEecCccccCCcccc
Confidence 4555655555666777777665544 23 3336788888888888762211 1133455 777777776432 223444
Q ss_pred CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEE
Q 016087 228 GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLL 305 (395)
Q Consensus 228 ~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 305 (395)
..+.|..|+.+.|. .+..-.....+|+.|.+..+.-..++..+. .-.|..|+++.|++.. +.--+..+..|+.|.
T Consensus 164 ~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQ 240 (722)
T ss_pred cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeee
Confidence 55678888887774 222222344455555555554333333333 4456777777777542 222345677788888
Q ss_pred eeCCC
Q 016087 306 IAGCD 310 (395)
Q Consensus 306 L~~~~ 310 (395)
|.+++
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 87764
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.10 E-value=0.49 Score=25.90 Aligned_cols=22 Identities=36% Similarity=0.282 Sum_probs=12.9
Q ss_pred CCCCcEEEeeeeec-ChHHHHHH
Q 016087 182 LSSLTKLFLMRVDA-TDLVLQSL 203 (395)
Q Consensus 182 ~~~Lk~L~L~~~~~-~~~~l~~l 203 (395)
|++|++|+|++|.- ++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 45666666666654 66665554
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.87 E-value=0.2 Score=50.25 Aligned_cols=42 Identities=36% Similarity=0.555 Sum_probs=37.4
Q ss_pred hccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087 13 ESLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA 54 (395)
Q Consensus 13 ~~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l 54 (395)
+.....|.++.||-|+..+|+++|+.++++++++||+.|+..
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 334557999999999999999999999999999999999853
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.19 E-value=0.43 Score=25.50 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=13.7
Q ss_pred CCCCcEEEeeeeecChHHHHHH
Q 016087 182 LSSLTKLFLMRVDATDLVLQSL 203 (395)
Q Consensus 182 ~~~Lk~L~L~~~~~~~~~l~~l 203 (395)
+++|++|+|++|.+++++...+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888866666554
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.84 E-value=0.2 Score=48.86 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=91.3
Q ss_pred CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEee
Q 016087 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l 215 (395)
+++.+++ ......++...+..+++|++|+|+++.+. ......++.|+.|++.+|.+ +...+ ..++.|..+++
T Consensus 96 ~l~~l~l--~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDL--YDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL 169 (414)
T ss_pred ceeeeec--cccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccC
Confidence 4444444 23333344433566899999999998887 44444778899999999998 33322 23788889999
Q ss_pred ecCCCCceEe--eCCCCCcceEEeccccccchhhc--cCCceeEEEEeCCCCccccccccccc--ccceeEecccccchH
Q 016087 216 QLCPGLKNLE--LSGLTKLNKFEVCDAEELQRLCI--IAQDVQEVSIQGPLPFQCKFNLASCK--FLKYLRFALTHIKDE 289 (395)
Q Consensus 216 ~~c~~~~~~~--i~~~~~L~~L~i~~c~~l~~l~~--~~p~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~ 289 (395)
.++....-.. ...+.+|+.+.+.++. +..+.. ....+..+.+..+....+. .+.... .|+.+++.++.+...
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccc
Confidence 8886542222 3556688888887764 111110 1111122222222210000 011122 278888888775532
Q ss_pred HHHHHhccCCCccEEEeeCC
Q 016087 290 WLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 290 ~~~~l~~~~~~L~~L~L~~~ 309 (395)
. ..+..+++++.|++.+.
T Consensus 248 ~--~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 248 P--EGLENLKNLPVLDLSSN 265 (414)
T ss_pred c--ccccccccccccchhhc
Confidence 1 34455677777776653
No 79
>PF13013 F-box-like_2: F-box-like domain
Probab=86.40 E-value=0.51 Score=36.29 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHhcCCCcccchhhhhhhh
Q 016087 21 ISNLPEPILHHILSFLPFTQTVQTRVLSR 49 (395)
Q Consensus 21 is~LPdeil~~Ils~L~~~d~~r~~~vsr 49 (395)
+.+||+||+..|+.+-+..+.......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999999988888887
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.37 E-value=1.6 Score=34.27 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=3.5
Q ss_pred CCCCccEEeee
Q 016087 206 GCPLIEYLSLQ 216 (395)
Q Consensus 206 ~~p~Le~L~l~ 216 (395)
+|.+|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 34444444443
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.74 E-value=6.9 Score=30.56 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCcceEEecccc-ccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087 230 TKLNKFEVCDAE-ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 230 ~~L~~L~i~~c~-~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
++|+.+++.... .+..-.. .+++|+.+.+.+....--...+..+++|+.+.+...... .-...+..+++|+.+.+.
T Consensus 12 ~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~~~~--i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 12 SNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNNLKS--IGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETSTT-E--E-TTTTTT-TTECEEEET
T ss_pred CCCCEEEECCCeeEeChhhcccccccccccccccccccceeeeecccccccccccccccc--cccccccccccccccccC
Confidence 455555554321 2222222 334566666654321111122445555666666432100 001234445666666553
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.84 E-value=1.6 Score=21.28 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.2
Q ss_pred cEEEee
Q 016087 302 ESLLIA 307 (395)
Q Consensus 302 ~~L~L~ 307 (395)
+.|+|+
T Consensus 4 ~~L~l~ 9 (17)
T PF13504_consen 4 RTLDLS 9 (17)
T ss_dssp SEEEET
T ss_pred CEEECC
Confidence 333333
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.99 E-value=2.8 Score=23.38 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=16.9
Q ss_pred CCCcEEEeeeeecChHHHHHHH
Q 016087 183 SSLTKLFLMRVDATDLVLQSLL 204 (395)
Q Consensus 183 ~~Lk~L~L~~~~~~~~~l~~l~ 204 (395)
++|++|+|++|.+++++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788999999998777666554
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=66.52 E-value=0.77 Score=36.97 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=18.0
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
.+|-+++|+|.++.+.+-..+ +...|.|+.|+++.+.
T Consensus 75 kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 445555555555554322111 4445555555555553
No 85
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=65.10 E-value=3.6 Score=30.91 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.2
Q ss_pred cccCCCCHHHHHHHhcCCCcccchh
Q 016087 19 DRISNLPEPILHHILSFLPFTQTVQ 43 (395)
Q Consensus 19 d~is~LPdeil~~Ils~L~~~d~~r 43 (395)
..|+.||.||-.+|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5689999999999999999888753
No 86
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=64.71 E-value=2.4 Score=34.25 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=6.3
Q ss_pred cccccccceeEecccc
Q 016087 270 LASCKFLKYLRFALTH 285 (395)
Q Consensus 270 ~~~~~~L~~L~L~~~~ 285 (395)
+..++.|+.|++..|.
T Consensus 96 ~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNP 111 (177)
T ss_pred HhhhHHhhhcccccCc
Confidence 3333444444443333
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=60.82 E-value=4 Score=36.42 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=37.2
Q ss_pred cccCCCCHHHHHHHhcCCC-cccchhhhhhhhhh------hhhccccceeeeccc
Q 016087 19 DRISNLPEPILHHILSFLP-FTQTVQTRVLSRTW------KRAWHTFSVLKFDSD 66 (395)
Q Consensus 19 d~is~LPdeil~~Ils~L~-~~d~~r~~~vsrrW------r~lw~~~~~l~~~~~ 66 (395)
--+.+||.+++..|+.+|+ .+|++.+++|-..- +++|+.+-.++|...
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3478999999999999996 89999999885444 356777666666555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.32 E-value=14 Score=36.71 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=33.5
Q ss_pred cchhhccCCceeEEEEeCCCC---cccccccccccccceeEecccccch------HHHHHHhccCCCccEEE
Q 016087 243 LQRLCIIAQDVQEVSIQGPLP---FQCKFNLASCKFLKYLRFALTHIKD------EWLCNQISKFPLLESLL 305 (395)
Q Consensus 243 l~~l~~~~p~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~ 305 (395)
+..+...+|+|..|.++++.. ....+.--....|++|-+.+|.+.. +.+..+-..||.|..|+
T Consensus 236 ~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 236 LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 344556777777777777631 0011111123456777777765332 23334445677777664
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.93 E-value=15 Score=36.62 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=25.5
Q ss_pred CCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEeeecC
Q 016087 181 KLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
++|.+..++|++|++ .-+.+..+....|+|..|+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 566666667777766 55566666666777777777766
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=41.60 E-value=0.74 Score=45.52 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=19.1
Q ss_pred cceeEecccccchHHHHHHhccC----CCccEEEeeCCC
Q 016087 276 LKYLRFALTHIKDEWLCNQISKF----PLLESLLIAGCD 310 (395)
Q Consensus 276 L~~L~L~~~~~~~~~~~~l~~~~----~~L~~L~L~~~~ 310 (395)
+..|++..|.+.+..+..+...+ +.++++++..|.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 55567777666655444444333 334666666554
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=38.56 E-value=20 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=7.9
Q ss_pred CCCcEEEeeeeec
Q 016087 183 SSLTKLFLMRVDA 195 (395)
Q Consensus 183 ~~Lk~L~L~~~~~ 195 (395)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666654
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=38.56 E-value=20 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=7.9
Q ss_pred CCCcEEEeeeeec
Q 016087 183 SSLTKLFLMRVDA 195 (395)
Q Consensus 183 ~~Lk~L~L~~~~~ 195 (395)
++|++|+|++|.+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666666654
No 93
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=31.35 E-value=67 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
+|.+|+.-++.+..+....+...-.-|.++|--.+..|.
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcN 207 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCN 207 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcC
Confidence 455666666665555444444444446666666666653
No 94
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=24.96 E-value=17 Score=33.73 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.4
Q ss_pred cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhccc
Q 016087 21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHT 57 (395)
Q Consensus 21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~ 57 (395)
+..+|++++..|++++..+++.++|.|++|-..+-+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 3468999999999999999999999999999875443
No 95
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=24.36 E-value=3.5e+02 Score=21.15 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCccccccc--ccCCCCccEE
Q 016087 90 IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEI--ILCSNSIEIL 167 (395)
Q Consensus 90 f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~--l~~~~~L~~L 167 (395)
|.+.+..++.. ... ..++++.+... ....+...+...-...++.+.+ ........+... +-++++++.+
T Consensus 3 ~~~~l~~~l~s-~~~-l~vk~l~i~~~------~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~ 73 (142)
T PF01827_consen 3 FFEKLQEILKS-KHK-LKVKKLKINSL------NQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEF 73 (142)
T ss_pred HHHHHHHHHcC-CCC-eeEEEEEEEcC------CHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceehee
Confidence 45556667766 434 57777777643 2245555565555567888888 211112222221 2347788888
Q ss_pred EEcceeccCCCccCCCCCcEEEeeeeecChHHHHH---HHcCCCCccEEee
Q 016087 168 TLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQS---LLIGCPLIEYLSL 215 (395)
Q Consensus 168 ~L~~~~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~---l~~~~p~Le~L~l 215 (395)
.+.+..........+.+++.+.+..-.++.+.+.. .+...|..+...+
T Consensus 74 ~i~~~~~~~~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 74 KIGGFVIDSFPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred EecccccccHHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 88775443212336777777777555555544433 3344555555555
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.26 E-value=49 Score=18.11 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=7.5
Q ss_pred CCCcEEEeeeeec
Q 016087 183 SSLTKLFLMRVDA 195 (395)
Q Consensus 183 ~~Lk~L~L~~~~~ 195 (395)
.+|+.|+|+.|.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666554
Done!