Query 016087
Match_columns 395
No_of_seqs 168 out of 2310
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 1.9E-24 6.6E-29 202.7 9.6 281 19-358 7-310 (336)
2 2p1m_B Transport inhibitor res 99.9 2.8E-24 9.6E-29 216.9 8.6 37 18-54 3-40 (594)
3 3ogk_B Coronatine-insensitive 99.9 2.8E-23 9.6E-28 209.6 14.3 187 22-219 14-231 (592)
4 4fcg_A Uncharacterized protein 99.6 1.2E-15 4.3E-20 142.3 14.2 212 136-352 80-312 (328)
5 2ast_B S-phase kinase-associat 99.6 1.4E-15 4.8E-20 142.1 11.3 223 128-355 37-285 (336)
6 4fcg_A Uncharacterized protein 99.5 2.2E-14 7.6E-19 133.8 9.0 191 161-356 80-292 (328)
7 4fmz_A Internalin; leucine ric 99.5 4.3E-13 1.5E-17 125.9 14.9 207 137-356 88-302 (347)
8 4fmz_A Internalin; leucine ric 99.5 6.2E-13 2.1E-17 124.7 15.0 208 137-356 110-326 (347)
9 3ogk_B Coronatine-insensitive 99.5 3.1E-13 1.1E-17 136.0 12.8 203 153-356 284-528 (592)
10 1h6u_A Internalin H; cell adhe 99.5 9.8E-13 3.4E-17 121.5 15.2 189 137-357 41-233 (308)
11 2z80_A TOLL-like receptor 2, v 99.4 1E-12 3.5E-17 123.7 14.2 170 137-310 52-233 (353)
12 2p1m_B Transport inhibitor res 99.4 8E-13 2.7E-17 133.0 13.9 107 106-218 105-221 (594)
13 1ogq_A PGIP-2, polygalacturona 99.4 6.4E-13 2.2E-17 123.0 11.5 216 138-356 51-283 (313)
14 3t6q_A CD180 antigen; protein- 99.4 5E-13 1.7E-17 135.0 11.2 171 137-310 278-460 (606)
15 3zyi_A Leucine-rich repeat-con 99.4 7.3E-13 2.5E-17 129.0 11.3 212 137-353 75-302 (452)
16 1o6v_A Internalin A; bacterial 99.4 4.9E-12 1.7E-16 123.7 16.3 103 249-355 285-389 (466)
17 2z66_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 121.8 10.0 203 151-355 19-237 (306)
18 3rgz_A Protein brassinosteroid 99.4 5.5E-13 1.9E-17 138.5 9.9 168 137-309 100-279 (768)
19 1o6v_A Internalin A; bacterial 99.4 4.6E-12 1.6E-16 123.8 15.9 207 137-356 156-368 (466)
20 1ozn_A Reticulon 4 receptor; N 99.4 2.1E-12 7.3E-17 117.7 12.6 202 149-354 21-238 (285)
21 3o53_A Protein LRIM1, AGAP0063 99.4 1.7E-12 6E-17 120.3 11.9 218 125-354 20-250 (317)
22 1ogq_A PGIP-2, polygalacturona 99.4 5.5E-13 1.9E-17 123.5 8.4 213 137-353 76-303 (313)
23 3zyj_A Leucine-rich repeat-con 99.4 9.4E-13 3.2E-17 127.8 10.3 212 137-353 64-291 (440)
24 3bz5_A Internalin-J, INLJ; leu 99.4 3.2E-12 1.1E-16 124.6 13.7 199 137-351 64-264 (457)
25 2id5_A Lingo-1, leucine rich r 99.4 3.6E-12 1.2E-16 124.9 13.6 215 137-354 104-333 (477)
26 2z63_A TOLL-like receptor 4, v 99.4 1.6E-12 5.6E-17 130.0 10.9 56 137-195 282-337 (570)
27 2ca6_A RAN GTPase-activating p 99.4 1.1E-12 3.7E-17 125.1 8.9 221 137-357 32-319 (386)
28 3vq2_A TLR4, TOLL-like recepto 99.4 1.3E-12 4.4E-17 131.9 9.9 195 160-354 326-534 (606)
29 3v47_A TOLL-like receptor 5B a 99.4 4.1E-12 1.4E-16 123.6 13.1 217 137-355 79-385 (455)
30 3oja_A Leucine-rich immune mol 99.4 2.6E-12 8.8E-17 126.3 11.6 207 137-354 34-250 (487)
31 3rgz_A Protein brassinosteroid 99.4 1.2E-12 4E-17 135.9 9.2 192 138-330 75-279 (768)
32 4eco_A Uncharacterized protein 99.3 3.7E-12 1.3E-16 129.4 11.9 214 137-353 206-469 (636)
33 2id5_A Lingo-1, leucine rich r 99.3 3.4E-12 1.2E-16 125.1 11.2 215 137-355 56-286 (477)
34 3bz5_A Internalin-J, INLJ; leu 99.3 7.6E-12 2.6E-16 121.9 13.6 223 106-353 64-298 (457)
35 1wwl_A Monocyte differentiatio 99.3 4E-13 1.4E-17 124.4 4.2 194 160-355 93-310 (312)
36 3vq2_A TLR4, TOLL-like recepto 99.3 2.1E-12 7.1E-17 130.4 9.8 127 228-355 374-511 (606)
37 3o6n_A APL1; leucine-rich repe 99.3 9.1E-12 3.1E-16 118.8 13.7 212 137-355 93-332 (390)
38 2z66_A Variable lymphocyte rec 99.3 5.2E-13 1.8E-17 123.1 4.8 214 137-355 28-262 (306)
39 3v47_A TOLL-like receptor 5B a 99.3 3.9E-12 1.3E-16 123.8 10.8 218 137-356 103-410 (455)
40 3oja_B Anopheles plasmodium-re 99.3 4E-12 1.4E-16 128.2 10.8 101 252-354 233-337 (597)
41 1z7x_W Ribonuclease inhibitor; 99.3 2.8E-12 9.5E-17 125.0 9.3 84 136-219 27-124 (461)
42 3o6n_A APL1; leucine-rich repe 99.3 1.6E-11 5.4E-16 117.1 13.6 210 137-356 117-354 (390)
43 1xku_A Decorin; proteoglycan, 99.3 2.2E-11 7.5E-16 113.4 13.8 170 155-329 93-272 (330)
44 2ca6_A RAN GTPase-activating p 99.3 5.9E-12 2E-16 120.0 9.7 205 151-355 21-288 (386)
45 3oja_A Leucine-rich immune mol 99.3 5.4E-12 1.9E-16 124.0 9.7 187 161-355 33-228 (487)
46 4ecn_A Leucine-rich repeat pro 99.3 1.2E-11 4.2E-16 128.8 12.7 171 137-310 448-655 (876)
47 3t6q_A CD180 antigen; protein- 99.3 1.5E-11 5.2E-16 124.0 12.7 178 152-330 267-459 (606)
48 3oja_B Anopheles plasmodium-re 99.3 2.1E-11 7.2E-16 122.9 13.4 210 137-355 123-359 (597)
49 1z7x_W Ribonuclease inhibitor; 99.3 1.9E-12 6.4E-17 126.2 5.2 216 138-354 4-297 (461)
50 3o53_A Protein LRIM1, AGAP0063 99.3 3.3E-12 1.1E-16 118.4 6.4 188 160-355 32-228 (317)
51 1h6u_A Internalin H; cell adhe 99.3 3.8E-11 1.3E-15 110.8 13.5 164 136-310 62-228 (308)
52 1xku_A Decorin; proteoglycan, 99.3 2.6E-11 9.1E-16 112.8 12.5 212 137-357 52-279 (330)
53 2z63_A TOLL-like receptor 4, v 99.3 1.1E-11 3.6E-16 124.1 9.9 196 154-355 274-508 (570)
54 3g06_A SSPH2 (leucine-rich rep 99.3 5.7E-11 1.9E-15 119.7 15.0 198 137-354 61-274 (622)
55 3zyj_A Leucine-rich repeat-con 99.3 3E-11 1E-15 117.1 12.3 206 145-356 49-270 (440)
56 2z62_A TOLL-like receptor 4, v 99.2 2.3E-11 7.8E-16 110.3 10.6 203 148-354 16-237 (276)
57 3zyi_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 117.3 12.3 205 145-355 60-280 (452)
58 3rfs_A Internalin B, repeat mo 99.2 8.3E-12 2.8E-16 113.1 7.1 169 158-353 59-234 (272)
59 2z7x_B TOLL-like receptor 1, v 99.2 2.9E-11 1E-15 119.7 11.5 62 249-310 322-385 (520)
60 2z81_A CD282 antigen, TOLL-lik 99.2 1.3E-11 4.5E-16 123.0 8.7 123 137-262 74-207 (549)
61 1ozn_A Reticulon 4 receptor; N 99.2 2.9E-11 1E-15 110.1 10.0 190 137-330 32-235 (285)
62 4ecn_A Leucine-rich repeat pro 99.2 2.9E-11 1E-15 126.0 11.2 210 137-353 548-818 (876)
63 3g06_A SSPH2 (leucine-rich rep 99.2 1.9E-10 6.7E-15 115.8 16.7 196 137-355 81-298 (622)
64 2z81_A CD282 antigen, TOLL-lik 99.2 2.5E-10 8.7E-15 113.6 17.0 215 137-354 26-264 (549)
65 4glp_A Monocyte differentiatio 99.2 1.3E-11 4.3E-16 114.1 6.9 148 206-355 143-308 (310)
66 2z80_A TOLL-like receptor 2, v 99.2 2.4E-11 8.2E-16 114.3 8.9 202 148-354 40-290 (353)
67 2z7x_B TOLL-like receptor 1, v 99.2 9.9E-11 3.4E-15 115.9 13.6 236 106-354 220-481 (520)
68 2ft3_A Biglycan; proteoglycan, 99.2 1.6E-11 5.6E-16 114.4 7.5 168 157-329 97-273 (332)
69 1h6t_A Internalin B; cell adhe 99.2 1.2E-10 4.2E-15 106.5 13.0 141 161-309 45-188 (291)
70 1p9a_G Platelet glycoprotein I 99.2 8.2E-11 2.8E-15 107.6 11.7 191 159-353 7-207 (290)
71 4eco_A Uncharacterized protein 99.2 4.1E-11 1.4E-15 121.7 8.7 211 137-353 305-578 (636)
72 4glp_A Monocyte differentiatio 99.2 4.1E-11 1.4E-15 110.6 7.6 214 107-330 65-304 (310)
73 3rfs_A Internalin B, repeat mo 99.2 2.6E-11 8.8E-16 109.8 5.8 163 136-329 62-231 (272)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 5.2E-10 1.8E-14 111.9 15.8 105 249-354 375-486 (562)
75 3goz_A Leucine-rich repeat-con 99.1 2E-11 6.9E-16 115.3 5.1 199 158-356 46-299 (362)
76 2xwt_C Thyrotropin receptor; s 99.1 9.6E-11 3.3E-15 103.8 9.1 184 163-351 32-236 (239)
77 1jl5_A Outer protein YOPM; leu 99.1 4.5E-10 1.5E-14 109.3 14.5 31 274-309 257-287 (454)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.2E-10 7.6E-15 114.6 12.7 75 137-219 100-180 (562)
79 4ezg_A Putative uncharacterize 99.1 2E-10 6.7E-15 98.7 10.6 101 205-309 85-191 (197)
80 3j0a_A TOLL-like receptor 5; m 99.1 1.2E-10 4.2E-15 122.0 11.1 80 274-354 266-351 (844)
81 2ft3_A Biglycan; proteoglycan, 99.1 7.9E-11 2.7E-15 109.7 8.7 211 137-356 54-279 (332)
82 2xwt_C Thyrotropin receptor; s 99.1 1.9E-10 6.5E-15 101.9 10.6 190 138-332 32-238 (239)
83 1m9s_A Internalin B; cell inva 99.1 2.1E-10 7.1E-15 115.3 11.1 163 137-310 43-208 (605)
84 1ziw_A TOLL-like receptor 3; i 99.1 2.3E-10 8E-15 117.0 11.5 60 251-310 381-441 (680)
85 2o6q_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 101.5 11.9 57 162-219 37-96 (270)
86 3goz_A Leucine-rich repeat-con 99.1 2.7E-10 9.3E-15 107.5 10.9 197 154-352 14-264 (362)
87 4ezg_A Putative uncharacterize 99.1 6E-10 2.1E-14 95.6 11.7 150 181-355 42-195 (197)
88 1wwl_A Monocyte differentiatio 99.1 4.1E-11 1.4E-15 110.8 4.4 201 153-356 56-289 (312)
89 3j0a_A TOLL-like receptor 5; m 99.1 2E-10 6.8E-15 120.4 10.1 102 137-240 266-372 (844)
90 1ziw_A TOLL-like receptor 3; i 99.1 2.1E-10 7.1E-15 117.4 9.8 105 249-354 478-597 (680)
91 1h6t_A Internalin B; cell adhe 99.1 4.6E-10 1.6E-14 102.6 10.7 163 137-310 46-211 (291)
92 2o6q_A Variable lymphocyte rec 99.1 7.8E-10 2.7E-14 99.8 11.6 188 163-354 17-218 (270)
93 1m9s_A Internalin B; cell inva 99.0 2.8E-10 9.5E-15 114.4 8.5 141 161-309 42-185 (605)
94 1jl5_A Outer protein YOPM; leu 99.0 2.1E-09 7.2E-14 104.5 13.7 204 137-355 131-371 (454)
95 2z62_A TOLL-like receptor 4, v 99.0 1.2E-09 4E-14 98.9 10.2 188 137-330 28-234 (276)
96 1xeu_A Internalin C; cellular 99.0 1.3E-09 4.3E-14 98.1 8.4 144 158-310 37-183 (263)
97 1p9a_G Platelet glycoprotein I 99.0 2.2E-09 7.4E-14 98.1 10.0 184 138-329 11-204 (290)
98 3m19_A Variable lymphocyte rec 98.9 1.8E-09 6.3E-14 96.3 8.7 89 149-240 24-117 (251)
99 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 6.2E-10 2.1E-14 73.7 3.3 38 18-55 6-43 (53)
100 1xeu_A Internalin C; cellular 98.9 1.2E-09 4.1E-14 98.3 6.0 166 162-356 19-187 (263)
101 3cvr_A Invasion plasmid antige 98.9 3.8E-09 1.3E-13 105.2 9.9 175 135-331 57-241 (571)
102 2ell_A Acidic leucine-rich nuc 98.9 1.2E-09 4.2E-14 91.0 5.2 127 162-310 24-158 (168)
103 4ay9_X Follicle-stimulating ho 98.9 5.9E-09 2E-13 97.8 10.2 210 137-350 30-255 (350)
104 3cvr_A Invasion plasmid antige 98.8 9.2E-09 3.1E-13 102.4 10.6 174 162-353 59-242 (571)
105 2je0_A Acidic leucine-rich nuc 98.8 9.8E-10 3.3E-14 89.7 2.9 58 250-307 87-148 (149)
106 3m19_A Variable lymphocyte rec 98.8 1.2E-08 4.1E-13 91.0 9.1 144 162-309 14-165 (251)
107 2ra8_A Uncharacterized protein 98.8 1.2E-07 4E-12 89.1 14.8 205 88-310 91-318 (362)
108 2o6s_A Variable lymphocyte rec 98.7 9.2E-09 3.1E-13 88.9 5.3 65 151-218 19-86 (208)
109 2o6s_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 86.5 7.0 141 182-328 27-173 (208)
110 2ell_A Acidic leucine-rich nuc 98.7 2.1E-08 7.2E-13 83.4 6.4 103 137-240 24-130 (168)
111 4g8a_A TOLL-like receptor 4; l 98.6 8E-08 2.7E-12 96.9 9.7 174 181-355 369-556 (635)
112 3e6j_A Variable lymphocyte rec 98.6 1E-07 3.5E-12 83.6 9.1 136 149-309 29-169 (229)
113 2ra8_A Uncharacterized protein 98.6 1.1E-07 3.6E-12 89.4 9.6 149 181-331 137-318 (362)
114 2je0_A Acidic leucine-rich nuc 98.6 3.1E-08 1.1E-12 80.6 4.9 82 137-219 17-99 (149)
115 1a9n_A U2A', U2A'; complex (nu 98.6 7.3E-08 2.5E-12 80.9 6.3 129 159-309 16-150 (176)
116 1a9n_A U2A', U2A'; complex (nu 98.6 6.7E-08 2.3E-12 81.1 5.7 131 137-288 19-154 (176)
117 2v70_A SLIT-2, SLIT homolog 2 98.5 1.1E-07 3.9E-12 82.8 7.2 65 152-219 24-92 (220)
118 2xot_A Amphoterin-induced prot 98.5 1.6E-07 5.4E-12 88.4 8.6 155 150-309 29-199 (361)
119 4g8a_A TOLL-like receptor 4; l 98.5 6.8E-07 2.3E-11 90.0 13.4 136 148-287 40-186 (635)
120 2v9t_B SLIT homolog 2 protein 98.5 3E-07 1E-11 80.1 9.2 69 148-219 20-91 (220)
121 3un9_A NLR family member X1; l 98.5 4.2E-08 1.4E-12 92.7 3.8 57 162-218 101-165 (372)
122 3e4g_A ATP synthase subunit S, 98.5 8.3E-08 2.8E-12 79.9 5.1 94 152-245 51-154 (176)
123 3e6j_A Variable lymphocyte rec 98.5 2.5E-07 8.6E-12 81.2 7.9 143 164-330 21-169 (229)
124 1ds9_A Outer arm dynein; leuci 98.5 2.2E-08 7.6E-13 85.8 0.1 66 151-218 37-103 (198)
125 3un9_A NLR family member X1; l 98.4 2.4E-07 8.1E-12 87.5 6.6 83 249-331 153-250 (372)
126 2v70_A SLIT-2, SLIT homolog 2 98.4 7.4E-07 2.5E-11 77.6 9.0 144 165-310 14-164 (220)
127 3e4g_A ATP synthase subunit S, 98.4 7.2E-07 2.5E-11 74.2 8.3 85 250-334 60-153 (176)
128 1ds9_A Outer arm dynein; leuci 98.4 3.4E-08 1.1E-12 84.7 -0.3 106 181-310 46-151 (198)
129 2v9t_B SLIT homolog 2 protein 98.4 5.2E-07 1.8E-11 78.6 7.3 141 165-308 14-161 (220)
130 4ay9_X Follicle-stimulating ho 98.3 4.7E-07 1.6E-11 84.7 6.0 202 145-351 15-233 (350)
131 2e31_A FBS1, F-box only protei 98.2 4.3E-07 1.5E-11 81.7 2.9 36 19-54 49-85 (297)
132 2xot_A Amphoterin-induced prot 98.2 2.4E-06 8E-11 80.3 6.8 160 165-329 21-198 (361)
133 1dce_A Protein (RAB geranylger 98.1 2.3E-06 7.8E-11 85.3 6.3 99 183-286 441-545 (567)
134 4b8c_D Glucose-repressible alc 98.0 5.9E-07 2E-11 92.3 -0.4 106 181-289 222-331 (727)
135 1dce_A Protein (RAB geranylger 98.0 8.6E-06 3E-10 81.1 7.9 185 159-347 346-566 (567)
136 1w8a_A SLIT protein; signaling 98.0 5.6E-06 1.9E-10 70.3 5.6 115 151-287 20-139 (192)
137 3l2o_B F-box only protein 4; s 98.0 9.4E-07 3.2E-11 78.6 0.5 33 21-53 5-37 (312)
138 2wfh_A SLIT homolog 2 protein 98.0 1.4E-05 4.8E-10 67.9 7.4 101 183-285 31-137 (193)
139 2o6r_A Variable lymphocyte rec 98.0 1.5E-05 5E-10 66.6 7.3 38 250-287 99-137 (177)
140 4b8c_D Glucose-repressible alc 97.9 4.8E-06 1.6E-10 85.6 4.3 108 201-310 217-327 (727)
141 3sb4_A Hypothetical leucine ri 97.9 2.2E-05 7.5E-10 72.6 7.5 101 250-353 201-309 (329)
142 2wfh_A SLIT homolog 2 protein 97.9 4E-05 1.4E-09 65.0 8.3 101 251-353 31-138 (193)
143 1w8a_A SLIT protein; signaling 97.9 3E-05 1E-09 65.7 7.4 101 137-240 29-136 (192)
144 4fdw_A Leucine rich hypothetic 97.8 7.1E-05 2.4E-09 71.2 10.6 182 162-353 157-357 (401)
145 2o6r_A Variable lymphocyte rec 97.8 4.1E-05 1.4E-09 63.8 7.2 109 151-262 19-135 (177)
146 3sb4_A Hypothetical leucine ri 97.7 6.4E-05 2.2E-09 69.4 8.3 96 229-326 225-327 (329)
147 3v7d_B Cell division control p 97.7 6.9E-06 2.4E-10 79.2 1.4 42 14-55 8-49 (464)
148 1io0_A Tropomodulin; LRR prote 97.6 0.00014 4.7E-09 61.2 8.0 60 250-309 92-161 (185)
149 2ovr_B FBW7, F-BOX/WD repeat p 97.5 3.6E-05 1.2E-09 73.8 3.1 41 14-54 12-52 (445)
150 1p22_A F-BOX/WD-repeat protein 97.5 1.9E-05 6.6E-10 75.6 1.0 38 16-53 6-47 (435)
151 3g39_A Variable lymphocyte rec 97.4 0.00019 6.6E-09 59.4 5.7 66 151-219 21-89 (170)
152 2r9u_A Variable lymphocyte rec 97.4 0.00023 7.8E-09 59.2 5.8 66 151-219 24-92 (174)
153 4fdw_A Leucine rich hypothetic 97.4 0.00071 2.4E-08 64.2 9.9 198 138-351 158-380 (401)
154 1io0_A Tropomodulin; LRR prote 97.2 0.00033 1.1E-08 58.9 4.8 118 158-290 32-167 (185)
155 3g39_A Variable lymphocyte rec 97.1 0.0007 2.4E-08 55.9 5.7 58 251-309 30-88 (170)
156 2r9u_A Variable lymphocyte rec 97.0 0.00093 3.2E-08 55.4 6.0 58 251-309 33-91 (174)
157 2ifg_A High affinity nerve gro 96.4 0.0026 9E-08 58.8 4.7 88 150-241 20-114 (347)
158 3rw6_A Nuclear RNA export fact 96.0 0.011 3.8E-07 52.5 6.5 56 249-305 194-257 (267)
159 4fs7_A Uncharacterized protein 95.6 0.025 8.5E-07 53.2 7.5 54 295-350 316-375 (394)
160 3rw6_A Nuclear RNA export fact 95.6 0.0075 2.5E-07 53.6 3.5 61 249-310 168-231 (267)
161 4fs7_A Uncharacterized protein 95.5 0.02 6.9E-07 53.8 6.5 92 249-346 295-393 (394)
162 2ifg_A High affinity nerve gro 95.3 0.038 1.3E-06 50.8 7.7 73 166-240 12-90 (347)
163 4gt6_A Cell surface protein; l 92.3 0.25 8.5E-06 46.2 7.0 120 228-351 263-388 (394)
164 1pgv_A TMD-1, tropomodulin TMD 91.4 0.3 1E-05 40.9 5.7 99 197-309 30-136 (197)
165 4gt6_A Cell surface protein; l 91.3 0.52 1.8E-05 44.0 8.0 98 249-352 263-368 (394)
166 1pgv_A TMD-1, tropomodulin TMD 91.1 0.75 2.6E-05 38.5 7.9 113 181-308 39-166 (197)
167 4h09_A Hypothetical leucine ri 83.2 1.8 6.2E-05 39.9 6.2 99 249-349 238-341 (379)
168 4h09_A Hypothetical leucine ri 82.5 4.7 0.00016 37.0 8.8 13 205-217 155-167 (379)
169 3rfe_A Platelet glycoprotein I 73.5 4.4 0.00015 31.1 4.7 41 153-195 24-67 (130)
170 3rfe_A Platelet glycoprotein I 49.6 6.1 0.00021 30.3 1.4 35 251-285 31-66 (130)
171 2kwv_A RAD30 homolog B, DNA po 23.4 51 0.0017 20.0 2.1 19 18-36 18-36 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.9e-24 Score=202.73 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=174.8
Q ss_pred cccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhccccceeeeccccccccccCCCCCcchhhhhhHHHHHHHHHHHH
Q 016087 19 DRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAWHTFSVLKFDSDFFHQVFLEDSNDGSEAGKQKLREIFNYIKETL 98 (395)
Q Consensus 19 d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~v~~~l 98 (395)
..|++|||||+.+||+||+.+|+++++.|||+|+++... |.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~-------------------------------------- 47 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES-------------------------------------- 47 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------------
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------------
Confidence 447899999999999999999999999999999987422 10
Q ss_pred hhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc---
Q 016087 99 RIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--- 175 (395)
Q Consensus 99 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--- 175 (395)
.++.+.+... ... +..+.....++++.+++.... ....+..++.+++|++|++++|.+.
T Consensus 48 --------~~~~l~l~~~----~~~----~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 48 --------LWQTLDLTGK----NLH----PDVTGRLLSQGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp --------TSSEEECTTC----BCC----HHHHHHHHHTTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred --------hheeeccccc----cCC----HHHHHhhhhccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHH
Confidence 1111111100 000 122233333456665553211 1122233556788888888887754
Q ss_pred CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--E--eeCCCCCcceEEeccccc-----cch
Q 016087 176 SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--L--ELSGLTKLNKFEVCDAEE-----LQR 245 (395)
Q Consensus 176 ~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~--~i~~~~~L~~L~i~~c~~-----l~~ 245 (395)
.+ ....+++|++|++++|.+++..... +..+++|++|++++|..+.. + .+..+++|++|++++|.. +..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 11 1236788888888888876555543 45588888888888854432 1 133567888888888832 233
Q ss_pred hhccCC-ceeEEEEeCCC--C--cccccccccccccceeEecccc-cchHHHHHHhccCCCccEEEeeCCCCCchh----
Q 016087 246 LCIIAQ-DVQEVSIQGPL--P--FQCKFNLASCKFLKYLRFALTH-IKDEWLCNQISKFPLLESLLIAGCDDLKSI---- 315 (395)
Q Consensus 246 l~~~~p-~L~~L~l~~~~--~--~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~---- 315 (395)
....+| +|++|+++++. . ..++..+..+++|++|++++|. +++..+. .+..+++|++|++++|..+...
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 344677 88888888873 1 2233445678888888888887 5554433 4567788888888888655432
Q ss_pred ccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeeeccee
Q 016087 316 NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQLG 358 (395)
Q Consensus 316 ~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~ 358 (395)
...+++|+.|++++|..-..+..-..+|+.|+++++.++....
T Consensus 268 l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 268 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccC
Confidence 2346888888888772211222222345566677776654443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.8e-24 Score=216.94 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=29.3
Q ss_pred ccccCCCCHHHHHHHhcCCC-cccchhhhhhhhhhhhh
Q 016087 18 IDRISNLPEPILHHILSFLP-FTQTVQTRVLSRTWKRA 54 (395)
Q Consensus 18 ~d~is~LPdeil~~Ils~L~-~~d~~r~~~vsrrWr~l 54 (395)
.|+|++|||||+.+||+||+ .+|++++++|||+|+++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 48899999999999999999 99999999999999987
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.8e-23 Score=209.58 Aligned_cols=187 Identities=10% Similarity=0.100 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHhcCC-Ccccchhhhhhhhhhhhhccccce-eeecccccccc-------ccCCCCCcchhhhhh------
Q 016087 22 SNLPEPILHHILSFL-PFTQTVQTRVLSRTWKRAWHTFSV-LKFDSDFFHQV-------FLEDSNDGSEAGKQK------ 86 (395)
Q Consensus 22 s~LPdeil~~Ils~L-~~~d~~r~~~vsrrWr~lw~~~~~-l~~~~~~~~~~-------~~~~~~~~~~~~~~~------ 86 (395)
++|||||+.+||+|| +.+|++++++|||+|++++...+. +.+. ..+... +|+ ...........
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~ 91 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPN-LRSLKLKGKPRAAMFNL 91 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTT-CSEEEEECSCGGGGGTC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCC-CeEEEecCCcchhhccc
Confidence 379999999999999 899999999999999987533221 1111 001000 000 00000000000
Q ss_pred ----HHH-HHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecC-CCcccccccccC
Q 016087 87 ----LRE-IFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLG-NPRFNLPEIILC 160 (395)
Q Consensus 87 ----~~~-f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~l~~~l~~ 160 (395)
... ....+..+.. . - +.++.+.+.... .. ...-.++......++++|++..+. .....++.....
T Consensus 92 ~~~~~~~~~~~~l~~l~~-~-~--~~L~~L~L~~~~----i~-~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 162 (592)
T 3ogk_B 92 IPENWGGYVTPWVTEISN-N-L--RQLKSVHFRRMI----VS-DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162 (592)
T ss_dssp SCTTSCCBCHHHHHHHHH-H-C--TTCCEEEEESCB----CC-HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHh-h-C--CCCCeEEeeccE----ec-HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhh
Confidence 000 0001111111 1 1 245555555321 11 222233333333347777765432 112223333345
Q ss_pred CCCccEEEEcceeccCCC-------ccCCCCCcEEEeeeeecC---hHHHHHHHcCCCCccEEeeecCC
Q 016087 161 SNSIEILTLAGLKLESPR-------SVKLSSLTKLFLMRVDAT---DLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~~~~-------~~~~~~Lk~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
|++|++|+|++|.+.... ...+++|++|+++++.++ ...+..++.+||+|++|++.+|.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 777777777777653211 125677777777777663 45666777777777777777764
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.2e-15 Score=142.32 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=153.4
Q ss_pred hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
..+++.|++..... ..+|..++.+++|++|+|+++.+. .|.. ..+++|++|+|++|.+. .+...+..+++|+.|
T Consensus 80 ~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence 36788888876443 478888888999999999998876 4433 37899999999999884 223347789999999
Q ss_pred eeecCCCCceEe-----------eCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeE
Q 016087 214 SLQLCPGLKNLE-----------LSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLR 280 (395)
Q Consensus 214 ~l~~c~~~~~~~-----------i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 280 (395)
++++|...+.+. +..+++|+.|++++|. .++.....+++|++|+++++....++..++.+++|++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 999986543221 1237789999998875 333333467889999998887555555677888999999
Q ss_pred ecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---cCCCccCEEecccCCCchhhh---hhCCCcceeEEeeee
Q 016087 281 FALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVK---IAASSLSIFKYSGDV 352 (395)
Q Consensus 281 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l~---~~~~~L~~L~~~~~~ 352 (395)
+++|.+... +...+..+++|+.|++++|.....+. ..+++|++|+|++|.....++ ..+++|+.+.+..+.
T Consensus 236 Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 236 LRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 988775543 23346778899999998887655443 356889999998877555444 567888888776553
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.4e-15 Score=142.15 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=167.3
Q ss_pred HHHHHHHHh-CCCcEEEEEecCCCcccccccccCC--CCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHH
Q 016087 128 DQCIFYALG-CNVKELSLELLGNPRFNLPEIILCS--NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQS 202 (395)
Q Consensus 128 ~~~l~~~~~-~~l~~L~l~~~~~~~~~l~~~l~~~--~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~ 202 (395)
..|-..... ..++.+++...... +..+... ++++.|+++++.+. .+....+++|++|+++++.+++..+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 456555433 34677776432211 3334444 78999999998876 344458999999999999998877888
Q ss_pred HHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEeccccc-----cchhhccCCceeEEEEeCC-CCcc--ccccccc
Q 016087 203 LLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEE-----LQRLCIIAQDVQEVSIQGP-LPFQ--CKFNLAS 272 (395)
Q Consensus 203 l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~-----l~~l~~~~p~L~~L~l~~~-~~~~--~~~~~~~ 272 (395)
.+..||+|++|++++|..... ..+..+++|++|++++|.. +..+...+++|++|+++++ .... +...+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 899999999999999953311 1345689999999999953 3333447899999999998 4322 3445677
Q ss_pred cc-ccceeEeccc--ccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchh----hhhhCC
Q 016087 273 CK-FLKYLRFALT--HIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVE----VKIAAS 341 (395)
Q Consensus 273 ~~-~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~----l~~~~~ 341 (395)
++ +|++|++++| .+++..+...+..+++|+.|++++|..++.. ...+++|++|++++|..+.. ....++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 89 9999999999 6777788888899999999999999855421 23569999999998865542 246799
Q ss_pred CcceeEEeeeeeec
Q 016087 342 SLSIFKYSGDVISF 355 (395)
Q Consensus 342 ~L~~L~~~~~~~~~ 355 (395)
+|+.|+++++ ++.
T Consensus 273 ~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 273 TLKTLQVFGI-VPD 285 (336)
T ss_dssp TCCEEECTTS-SCT
T ss_pred CCCEEeccCc-cCH
Confidence 9999999998 544
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.51 E-value=2.2e-14 Score=133.80 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=148.1
Q ss_pred CCCccEEEEcceecc-CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEE
Q 016087 161 SNSIEILTLAGLKLE-SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFE 236 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~-~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~ 236 (395)
..+++.|+|+++.+. .+. ...+++|++|+|+++.+. .+...+..+++|++|++++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999998876 343 347999999999999985 23334678999999999998643 22 345678999999
Q ss_pred eccccccchhhc------------cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEE
Q 016087 237 VCDAEELQRLCI------------IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESL 304 (395)
Q Consensus 237 i~~c~~l~~l~~------------~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 304 (395)
+++|.....+.. .+++|+.|+++++....++..++.+++|++|++++|.++. +...+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 999864333321 3899999999998755566668889999999999998773 33357889999999
Q ss_pred EeeCCCCCchhc---cCCCccCEEecccCCCchhh---hhhCCCcceeEEeeeeeecc
Q 016087 305 LIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEV---KIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 305 ~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l---~~~~~~L~~L~~~~~~~~~~ 356 (395)
++++|.....+. ..+++|++|+|++|.....+ ...+++|+.|++++|++...
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 999987665543 34689999999988765544 46799999999999876443
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=4.3e-13 Score=125.86 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=118.1
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCccEEe
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~Le~L~ 214 (395)
++++++++..+.. ..++ .+..+++|++|++++|.+. .+....+++|++|++++|.. ..- . .+..+++|++|+
T Consensus 88 ~~L~~L~L~~n~i--~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~l~~L~~L~ 161 (347)
T 4fmz_A 88 VKLTNLYIGTNKI--TDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL--S-PLSNMTGLNYLT 161 (347)
T ss_dssp TTCCEEECCSSCC--CCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCC--G-GGTTCTTCCEEE
T ss_pred CcCCEEEccCCcc--cCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccc--c-chhhCCCCcEEE
Confidence 4555555543321 1222 3445666666666665554 22233566666666666643 111 0 145566666666
Q ss_pred eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087 215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
+.+|.......+..+++|+.|++++|. .+.. ....++|+.+.++++....... +..+++|++|++++|.++....
T Consensus 162 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-
Confidence 666643322224455667777776664 2222 2256677777776665332222 5667788888888877654321
Q ss_pred HHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCCch--hhhhhCCCcceeEEeeeeeecc
Q 016087 293 NQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~l~--~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
+..+++|++|+++++. +..+ ...+++|++|+++++. +. .....+++|+.|++++|++...
T Consensus 239 --~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 239 --LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp --GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGG
T ss_pred --hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCc
Confidence 6677888888888764 2222 2345788888887653 22 3346688888888888876543
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.47 E-value=6.2e-13 Score=124.74 Aligned_cols=208 Identities=17% Similarity=0.109 Sum_probs=145.7
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 214 (395)
++++++++..+. ...++. +..+++|+.|++++|... .+....+++|++|+++++.+..... +..+++|+.|+
T Consensus 110 ~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDN--ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSC--CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEE
T ss_pred CcCCEEECcCCc--ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEE
Confidence 688888885433 233444 677899999999998543 3334478999999999998832211 67899999999
Q ss_pred eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087 215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
+++|.......+..+++|+.|.+.++. .+.. ...+++|++|+++++....... +..+++|++|+++++.++.-
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--- 258 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--- 258 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---
Confidence 998864432235567788999888875 2222 2367889999998887444333 67788899999988876652
Q ss_pred HHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeecc
Q 016087 293 NQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
..+..+++|+.|++++|. +..+ ...+++|+.|++++|.-.. .....+++|+.|++++|+++..
T Consensus 259 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 346778889999888874 2222 2356888888888764322 3346688888888888876543
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.46 E-value=3.1e-13 Score=136.02 Aligned_cols=203 Identities=18% Similarity=0.144 Sum_probs=136.8
Q ss_pred cccccccCCCCccEEEEcceeccCC---C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeec----------C
Q 016087 153 NLPEIILCSNSIEILTLAGLKLESP---R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQL----------C 218 (395)
Q Consensus 153 ~l~~~l~~~~~L~~L~L~~~~~~~~---~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~----------c 218 (395)
.+|..+..+++|++|+|++|.+... . ...+++|++|++. ..+.+..+..+...|++|++|++.+ |
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 3444455677888888888764311 1 2367888888888 4456667777778888888888884 5
Q ss_pred CCCceEe----eCCCCCcceEEecccc----ccchhhccCCceeEEEEeCCC----Ccc------cccccccccccceeE
Q 016087 219 PGLKNLE----LSGLTKLNKFEVCDAE----ELQRLCIIAQDVQEVSIQGPL----PFQ------CKFNLASCKFLKYLR 280 (395)
Q Consensus 219 ~~~~~~~----i~~~~~L~~L~i~~c~----~l~~l~~~~p~L~~L~l~~~~----~~~------~~~~~~~~~~L~~L~ 280 (395)
....... ...+++|++|.+..+. .+..+...+|+|++|+++++. ... +...+..+++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 5443221 1246789999884332 222333358899999997421 111 222356689999999
Q ss_pred ecccc--cchHHHHHHhccCCCccEEEeeCCCCC----chhccCCCccCEEecccCCC----chhhhhhCCCcceeEEee
Q 016087 281 FALTH--IKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLR----LVEVKIAASSLSIFKYSG 350 (395)
Q Consensus 281 L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~~Lk~L~L~~~~~----l~~l~~~~~~L~~L~~~~ 350 (395)
++.|. +++..+..+...+++|+.|++++|..- ..+...+++|++|+|++|.- +..+...+++|+.|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 97543 777777777778999999999987622 22345679999999998861 223446799999999999
Q ss_pred eeeecc
Q 016087 351 DVISFQ 356 (395)
Q Consensus 351 ~~~~~~ 356 (395)
|+++.+
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 987655
No 10
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=9.8e-13 Score=121.50 Aligned_cols=189 Identities=16% Similarity=0.070 Sum_probs=98.3
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++++++..+. ...++ .+..+++|++|++++|.+. .+....+++|++|+++++.+..- . .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEEC
Confidence 355665553322 12233 3444556666666665544 22223555555666555555221 0 1344555555555
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHh
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI 295 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 295 (395)
++|.......+. .+++|++|+++++....+.. ++.+++|++|++++|.+++-. . +
T Consensus 115 ~~n~l~~~~~l~---------------------~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l 169 (308)
T 1h6u_A 115 TSTQITDVTPLA---------------------GLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--P-L 169 (308)
T ss_dssp TTSCCCCCGGGT---------------------TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-G
T ss_pred CCCCCCCchhhc---------------------CCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--h-h
Confidence 554322111122 44556666665554322222 556677777777776655421 1 5
Q ss_pred ccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecce
Q 016087 296 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQL 357 (395)
Q Consensus 296 ~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~~ 357 (395)
..+++|+.|+++++..-... ...+++|++|+++++. .+.. ...+++|+.|++++++++...
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred cCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence 66677777777765321111 2345677777776543 2222 356888888888888875533
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=123.72 Aligned_cols=170 Identities=18% Similarity=0.089 Sum_probs=121.9
Q ss_pred CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
+++++|++.... ...++. .+..+++|++|+++++.+. .+. ...+++|++|+++++.++.- ....+..+++|++
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 478888875433 334444 5667899999999998776 333 33789999999999988431 1234678999999
Q ss_pred EeeecCCCCce---EeeCCCCCcceEEeccccccchh----hccCCceeEEEEeCCCCccc-ccccccccccceeEeccc
Q 016087 213 LSLQLCPGLKN---LELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALT 284 (395)
Q Consensus 213 L~l~~c~~~~~---~~i~~~~~L~~L~i~~c~~l~~l----~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~ 284 (395)
|++++|....- ..+..+++|+.|+++++..+..+ ....++|++|+++++..... +..++.+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 99999854321 13456889999999988523222 22678999999998864332 445778899999999999
Q ss_pred ccchHHHHHHhccCCCccEEEeeCCC
Q 016087 285 HIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 285 ~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
.+.. ........+++|+.|+++++.
T Consensus 209 ~l~~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 209 QHIL-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CSTT-HHHHHHHHTTTEEEEEEESCB
T ss_pred cccc-chhhhhhhcccccEEECCCCc
Confidence 8753 233445668999999999874
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=8e-13 Score=132.99 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=71.8
Q ss_pred ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEec-CCCcccccccccCCCCccEEEEcceeccCCC------
Q 016087 106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELL-GNPRFNLPEIILCSNSIEILTLAGLKLESPR------ 178 (395)
Q Consensus 106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~-~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~------ 178 (395)
+.++.+.+.... .....+.. +.. ..+++++|++..+ ......++.....|++|++|+|++|.+....
T Consensus 105 ~~L~~L~L~~~~----~~~~~~~~-l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMV----VTDDCLEL-IAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCB----CCHHHHHH-HHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcE----EcHHHHHH-HHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 478888887542 11121111 111 2379999999765 2222335555557999999999998754211
Q ss_pred -ccCCCCCcEEEeeeee--cChHHHHHHHcCCCCccEEeeecC
Q 016087 179 -SVKLSSLTKLFLMRVD--ATDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 179 -~~~~~~Lk~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
...+++|++|+++++. ++...+..++..||+|+.|++.+|
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 1267899999999886 577788888888999999999877
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.42 E-value=6.4e-13 Score=123.02 Aligned_cols=216 Identities=13% Similarity=0.106 Sum_probs=119.5
Q ss_pred CCcEEEEEecCCC-cccccccccCCCCccEEEEcc-eecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 138 NVKELSLELLGNP-RFNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 138 ~l~~L~l~~~~~~-~~~l~~~l~~~~~L~~L~L~~-~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
+++++++...... ...+|..+..+++|++|++++ +.+. .|.. ..+++|++|+|+++.+... +...+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence 4555555543321 124566666677777777764 3332 2322 2667777777777766311 1112455677777
Q ss_pred EeeecCCCCce--EeeCCCCCcceEEecccc---ccchhhccCC-ceeEEEEeCCCCc-ccccccccccccceeEecccc
Q 016087 213 LSLQLCPGLKN--LELSGLTKLNKFEVCDAE---ELQRLCIIAQ-DVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTH 285 (395)
Q Consensus 213 L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~---~l~~l~~~~p-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~ 285 (395)
|++++|..... ..+..+++|++|+++++. .+.......+ +|+.|+++++... ..+..+..+. |+.|+++++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77776642211 123455677777777664 1111122333 7777777766522 2233344444 7777777776
Q ss_pred cchHHHHHHhccCCCccEEEeeCCCCCchh--ccCCCccCEEecccCCC---chhhhhhCCCcceeEEeeeeeecc
Q 016087 286 IKDEWLCNQISKFPLLESLLIAGCDDLKSI--NISSRSLKLLEIYDCLR---LVEVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~Lk~L~L~~~~~---l~~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
+... ....+..+++|+.|+++++.....+ ...+++|++|+++++.- ++.....+++|+.|++++|+++..
T Consensus 209 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred ccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 5532 2344566777777777776422111 22347777777776542 223345677788888887776543
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=5e-13 Score=134.97 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=82.9
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
++++++++.... ...+|..+..+++|++|++++|.+. .+ ....+++|++|+++++.+........+..+++|++|
T Consensus 278 ~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 456666654322 2356666666677777777766554 11 222566666666666654211111124456666666
Q ss_pred eeecCCCCceE----eeCCCCCcceEEecccc--cc-chhhccCCceeEEEEeCCCCccc--ccccccccccceeEeccc
Q 016087 214 SLQLCPGLKNL----ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQC--KFNLASCKFLKYLRFALT 284 (395)
Q Consensus 214 ~l~~c~~~~~~----~i~~~~~L~~L~i~~c~--~l-~~l~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~ 284 (395)
++++|...... .+..+++|+.|++++|. .+ ......+++|++|+++++..... ...+..+++|+.|+++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 66665433211 23345566666666653 11 11112345566666655542111 112344555555555555
Q ss_pred ccchHHHHHHhccCCCccEEEeeCCC
Q 016087 285 HIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 285 ~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
.+... ....+..+++|++|+++++.
T Consensus 436 ~l~~~-~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 436 LLDIS-SEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCBTT-CTTTTTTCTTCCEEECTTCB
T ss_pred ccCCc-CHHHHhCCCCCCEEECCCCC
Confidence 44321 12233445555555555543
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=7.3e-13 Score=129.03 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=144.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
.+++.|++...... .-.+..+..+++|+.|+|+++.+. .+.. ..+++|++|+|++|.+..-. ...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence 47788877543321 122445667888999999988765 3333 37889999999988873211 1235678899999
Q ss_pred eeecCCCCceE---eeCCCCCcceEEeccccccchhh----ccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087 214 SLQLCPGLKNL---ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 214 ~l~~c~~~~~~---~i~~~~~L~~L~i~~c~~l~~l~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 286 (395)
++++|... .+ .+..+++|+.|++.+|..+..+. ...++|++|+++++....++ .+..+++|+.|+|++|.+
T Consensus 153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 99888643 22 23467899999998876444432 25788999999888744433 466788999999999887
Q ss_pred chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087 287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
+.. ....+..+++|+.|+++++..-.. ....+++|+.|+|+++. .+. .....+++|+.|++++|+.
T Consensus 231 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 231 PEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 642 234567889999999988753221 22346889999998652 222 3345688999999998875
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=4.9e-12 Score=123.69 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=56.6
Q ss_pred cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch-hccCCCccCEEec
Q 016087 249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS-INISSRSLKLLEI 327 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~-~~~~~~~Lk~L~L 327 (395)
.+++|+.|+++++....... ++.+++|+.|++++|.+++... +..+++|+.|++++|.--.. ....+++|+.|++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCchhhccCCCCCEEeC
Confidence 34555555555554222221 4456666666666665544221 45566666666666531111 1224577777777
Q ss_pred ccCCCchhh-hhhCCCcceeEEeeeeeec
Q 016087 328 YDCLRLVEV-KIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 328 ~~~~~l~~l-~~~~~~L~~L~~~~~~~~~ 355 (395)
+++.-.... ...+++|+.|++++|+++.
T Consensus 361 ~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCCccCccchhhcCCCCCEEeccCCcccC
Confidence 755422211 3567888888888887655
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=8.1e-13 Score=121.76 Aligned_cols=203 Identities=20% Similarity=0.188 Sum_probs=110.9
Q ss_pred cccccccccCCCCccEEEEcceecc-CCCc--cCCCCCcEEEeeeeecChH-HHHHHHcCCCCccEEeeecCCCCce-Ee
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LE 225 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~--~~~~~Lk~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~c~~~~~-~~ 225 (395)
...+|..+ .++|++|+++++.+. .+.. ..+++|++|+|+++.+... .....+..+++|++|++++|....- ..
T Consensus 19 l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 34445433 246777777776655 2221 2677777777777766311 0011223467777777777643211 12
Q ss_pred eCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCC
Q 016087 226 LSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPL 300 (395)
Q Consensus 226 i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 300 (395)
+..+++|++|+++++. .+.. .....++|++|+++++.... .+..+..+++|++|+++++.+.+......+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4456677777777664 2221 12255677777777665322 22235556777777777776554333344566677
Q ss_pred ccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087 301 LESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 301 L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~ 355 (395)
|+.|+++++.--.. ....+++|+.|+++++. .+. .....+++|+.|++++|++..
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 77777776642211 12234677777776543 121 123456777777777776543
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.39 E-value=5.5e-13 Score=138.48 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=102.5
Q ss_pred CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCc--cCCCCCcEEEeeeeecChHHHH--HHHcCCC
Q 016087 137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATDLVLQ--SLLIGCP 208 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~--~~~~~Lk~L~L~~~~~~~~~l~--~l~~~~p 208 (395)
+++++|+|..... ...+|. .+..+++|++|+|++|.+. .+.. ..+++|++|+|+++.++..... ..+..++
T Consensus 100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 5788888764322 123555 6778899999999988765 2222 4788999999999988332222 2367788
Q ss_pred CccEEeeecCCCCceEeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCc-ccccccccccccceeEeccc
Q 016087 209 LIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALT 284 (395)
Q Consensus 209 ~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~ 284 (395)
+|++|++++|..........+++|+.|++++|.- ++. ...+++|++|+++++... ..+..++.+++|++|++++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC
Confidence 8888888887543333445667777777777751 222 225667777777766532 23334556666666666666
Q ss_pred ccchHHHHHHhccCCCccEEEeeCC
Q 016087 285 HIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 285 ~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
.+...... ..+++|++|+++++
T Consensus 258 ~l~~~~~~---~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 258 QFVGPIPP---LPLKSLQYLSLAEN 279 (768)
T ss_dssp CCEESCCC---CCCTTCCEEECCSS
T ss_pred cccCccCc---cccCCCCEEECcCC
Confidence 54421100 14455555555554
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.39 E-value=4.6e-12 Score=123.82 Aligned_cols=207 Identities=17% Similarity=0.096 Sum_probs=154.1
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++++++.... ..++ .+..+++|+.|++++|.+. .+....+++|++|+++++.+..... +..+++|++|++
T Consensus 156 ~~L~~L~l~~~~---~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 228 (466)
T 1o6v_A 156 TSLQQLSFGNQV---TDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSL 228 (466)
T ss_dssp TTCSEEEEEESC---CCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEEC
T ss_pred CcccEeecCCcc---cCch-hhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEEC
Confidence 689999986422 2223 2678999999999999876 3334489999999999999833211 567999999999
Q ss_pred ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 293 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (395)
++|.......+..+++|+.|++++|. .+.. ...+++|+.|+++++....... +..+++|+.|+++++.+.+-.
T Consensus 229 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--- 303 (466)
T 1o6v_A 229 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--- 303 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG---
T ss_pred CCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch---
Confidence 99864432245567899999999986 2222 2367899999999987444333 778999999999999876532
Q ss_pred HhccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCCCch--hhhhhCCCcceeEEeeeeeecc
Q 016087 294 QISKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLV--EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 294 l~~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~~l~--~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
.+..+++|+.|++++|.-.... ...+++|+.|+++++. +. .-...+++|+.|++++|++...
T Consensus 304 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 304 PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCcc
Confidence 2678999999999998533222 2457999999998763 33 2346799999999999987443
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.39 E-value=2.1e-12 Score=117.71 Aligned_cols=202 Identities=16% Similarity=0.108 Sum_probs=139.7
Q ss_pred CCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087 149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 224 (395)
Q Consensus 149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~- 224 (395)
.+...+|..+ .++|++|+++++.+. .+. ...+++|++|+++++.+..-. ...+..+++|++|++++|..+..+
T Consensus 21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccC
Confidence 3344555433 468999999988776 222 337899999999998873211 123567899999999998644332
Q ss_pred --eeCCCCCcceEEecccc--cc-chhhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccC
Q 016087 225 --ELSGLTKLNKFEVCDAE--EL-QRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKF 298 (395)
Q Consensus 225 --~i~~~~~L~~L~i~~c~--~l-~~l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 298 (395)
.+..+++|+.|+++++. .+ .......++|++|+++++....+.. .++.+++|++|+++++.++.- ....+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 176 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGL 176 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTC
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCc
Confidence 34567899999999885 22 1122357899999999887444333 367789999999999887632 22346778
Q ss_pred CCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087 299 PLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 299 ~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~ 354 (395)
++|+.|+++++..-.. ....+++|+.|+++++. .+. .....+++|+.|++++|++.
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9999999998753322 22346899999998653 222 33567899999999999874
No 21
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1.7e-12 Score=120.29 Aligned_cols=218 Identities=18% Similarity=0.077 Sum_probs=150.7
Q ss_pred hhHHHHHHHHHh--CCCcEEEEEecCCCccccc-ccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHH
Q 016087 125 PYIDQCIFYALG--CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVL 200 (395)
Q Consensus 125 ~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l 200 (395)
..+...+..... +++++|++..... ..++ ..+..+++|++|+|++|.+. .+....+++|++|++++|.++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred cchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence 444555544432 5788888865332 2333 45677899999999998775 2224478999999999998843
Q ss_pred HHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcccc-cc-cccccc
Q 016087 201 QSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQCK-FN-LASCKF 275 (395)
Q Consensus 201 ~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~~~-~~-~~~~~~ 275 (395)
+..++.|+.|++++|... ......+++|+.|+++++. .+.... ...++|++|+++++...... .. ...+++
T Consensus 95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 234689999999998643 4445567899999999885 222222 25789999999988744322 22 346789
Q ss_pred cceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeee
Q 016087 276 LKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGD 351 (395)
Q Consensus 276 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~ 351 (395)
|++|++++|.++.- .....+++|+.|+++++.-- ......+++|+.|+++++. .++.....+++|+.|++++|
T Consensus 171 L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 171 LEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 99999999987643 12234789999999987522 1223356899999998653 22333456889999999999
Q ss_pred eee
Q 016087 352 VIS 354 (395)
Q Consensus 352 ~~~ 354 (395)
++.
T Consensus 248 ~~~ 250 (317)
T 3o53_A 248 GFH 250 (317)
T ss_dssp CCB
T ss_pred Ccc
Confidence 876
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.39 E-value=5.5e-13 Score=123.50 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=153.1
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
+++++|++.....-...+|..+..+++|++|+|+++.+. .+... .+++|++|+++++.+... +...+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 789999998422223467888889999999999998875 44433 899999999999988421 12236779999999
Q ss_pred eeecCCCCceE--eeCCCC-CcceEEecccc---ccchhhccCCceeEEEEeCCCCc-ccccccccccccceeEeccccc
Q 016087 214 SLQLCPGLKNL--ELSGLT-KLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 214 ~l~~c~~~~~~--~i~~~~-~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~ 286 (395)
++++|.....+ .+..++ +|+.|+++++. .+....... +|+.|+++++... ..+..+..+++|+.|+++++.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 99998643222 334555 99999999986 112222233 3999999998632 2455678899999999999987
Q ss_pred chHHHHHHhccCCCccEEEeeCCCCC---chhccCCCccCEEecccCCCchhhh--hhCCCcceeEEeeeee
Q 016087 287 KDEWLCNQISKFPLLESLLIAGCDDL---KSINISSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSGDVI 353 (395)
Q Consensus 287 ~~~~~~~l~~~~~~L~~L~L~~~~~l---~~~~~~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~~~~ 353 (395)
+... ..+..+++|++|+++++... ......+++|++|+|+++.-...++ ..+++|+.+++.+|+.
T Consensus 234 ~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 234 AFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCBG--GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred eeec--CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 6432 22577899999999998633 2233456899999998764322332 5678899999998873
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=9.4e-13 Score=127.80 Aligned_cols=212 Identities=13% Similarity=0.052 Sum_probs=126.9
Q ss_pred CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
.+++.|++..... ..+ +..+..+++|+.|+|++|.+. .+..+ .+++|++|+|++|.++.-. ...+..+++|++
T Consensus 64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 3566666644322 222 234556777888888777665 22222 6777888888877763211 113456777888
Q ss_pred EeeecCCCCceE--eeCCCCCcceEEeccccccchhh----ccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087 213 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEELQRLC----IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 213 L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~~l~~l~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 286 (395)
|++++|...... .+..+++|+.|++.+|..+..+. ...++|++|+++++....++ .+..+++|+.|+|++|.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 888777533111 23456778888887765333322 24677888888777643333 356677888888888776
Q ss_pred chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087 287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
+.- ....+..+++|+.|+++++..-.. ....+++|+.|+|+++. .+. .....+++|+.|++++|+.
T Consensus 220 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred Ccc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 542 133456778888888877642211 12245778888887542 111 2335577888888888765
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.38 E-value=3.2e-12 Score=124.56 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=101.1
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQ 216 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 216 (395)
+++++|++...... .+| +..+++|++|++++|.+.......+++|++|+++++.+..- . +..+++|+.|+++
T Consensus 64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCA 135 (457)
T ss_dssp TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECT
T ss_pred CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECC
Confidence 45555555443221 122 34455666666666555421223556666666666655321 1 4556666666666
Q ss_pred cCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHh
Q 016087 217 LCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQI 295 (395)
Q Consensus 217 ~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 295 (395)
+|... .+.+..+++|+.|++++|..+..+.+ ..++|+.|+++++....++ ++.+++|+.|+++++.++.- -+
T Consensus 136 ~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l 208 (457)
T 3bz5_A 136 RNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DL 208 (457)
T ss_dssp TSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CC
T ss_pred CCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----cc
Confidence 65322 23445556666666666643333322 4566666666665533322 55566677777766665542 14
Q ss_pred ccCCCccEEEeeCCCCCchh-ccCCCccCEEecccCCCchhhhhhCCCcceeEEeee
Q 016087 296 SKFPLLESLLIAGCDDLKSI-NISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD 351 (395)
Q Consensus 296 ~~~~~L~~L~L~~~~~l~~~-~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~ 351 (395)
..+++|+.|+++++.-- .+ ...+++|+.|+++++.--..-...+++|+.|+++++
T Consensus 209 ~~l~~L~~L~Ls~N~l~-~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp TTCTTCSEEECCSSCCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred ccCCCCCEEECcCCccc-ccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 55666777777665321 12 223466777777644211111234555554444443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.6e-12 Score=124.90 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=130.5
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
+++++|++..... ....+..+..+++|++|+++++.+. .+. ...+++|++|+|+++.++.-. ...+..+++|+.|
T Consensus 104 ~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L 181 (477)
T 2id5_A 104 SNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVL 181 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEE
T ss_pred CCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEE
Confidence 4556655533221 1112334445667777777766544 222 226777777777777763211 2235667778888
Q ss_pred eeecCCCCce--EeeCCCCCcceEEeccccccchh---hccCCceeEEEEeCCCCcccc-cccccccccceeEecccccc
Q 016087 214 SLQLCPGLKN--LELSGLTKLNKFEVCDAEELQRL---CIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 214 ~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~l~~l---~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~ 287 (395)
++.+|..... ..+..+++|+.|++++|..+..+ ....++|++|+++++....++ ..+..+++|+.|+|+++.++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 8777753311 12345678888888877532222 234458888888887644333 24667888888888888765
Q ss_pred hHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087 288 DEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~ 354 (395)
.-. ...+..+++|+.|+|+++..-.. ....+++|+.|+|+++. .+. .....+++|+.|++++|++.
T Consensus 262 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 262 TIE-GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EEC-TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccC-hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 322 23456788888888888752221 22346889999988653 222 33456788999999888764
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=130.04 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCCcEEEeeeeec
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSLTKLFLMRVDA 195 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~Lk~L~L~~~~~ 195 (395)
++++.+++.... ...+|..+..+ +|++|++++|.+..-....+++|++|++.++..
T Consensus 282 ~~L~~L~l~~~~--l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 282 TNVSSFSLVSVT--IERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp TTCSEEEEESCE--ECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred CcccEEEecCcc--chhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 678888886533 23566666666 777777777665511123455555555555544
No 27
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=1.1e-12 Score=125.06 Aligned_cols=221 Identities=17% Similarity=0.082 Sum_probs=129.8
Q ss_pred CCCcEEEEEecCCC---cccccccccCCCCccEEEEcceecc-----CCCc--------cCCCCCcEEEeeeeecChH--
Q 016087 137 CNVKELSLELLGNP---RFNLPEIILCSNSIEILTLAGLKLE-----SPRS--------VKLSSLTKLFLMRVDATDL-- 198 (395)
Q Consensus 137 ~~l~~L~l~~~~~~---~~~l~~~l~~~~~L~~L~L~~~~~~-----~~~~--------~~~~~Lk~L~L~~~~~~~~-- 198 (395)
+++++|++..+... ...++..+..+++|++|+|++|.+. .|.. ..+++|++|+|++|.++..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 55666666432211 1123333456777777777776432 1111 2567777888877777433
Q ss_pred -HHHHHHcCCCCccEEeeecCCCCce--Eee----CCC---------CCcceEEecccc----ccchh---hccCCceeE
Q 016087 199 -VLQSLLIGCPLIEYLSLQLCPGLKN--LEL----SGL---------TKLNKFEVCDAE----ELQRL---CIIAQDVQE 255 (395)
Q Consensus 199 -~l~~l~~~~p~Le~L~l~~c~~~~~--~~i----~~~---------~~L~~L~i~~c~----~l~~l---~~~~p~L~~ 255 (395)
.+...+..+++|+.|++++|..... ..+ ..+ ++|++|.+++|. .+..+ ...+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3444556777788888877753200 011 112 577888887774 12211 125678888
Q ss_pred EEEeCCCCcc------cccccccccccceeEecccccchH---HHHHHhccCCCccEEEeeCCCCCch----hcc-----
Q 016087 256 VSIQGPLPFQ------CKFNLASCKFLKYLRFALTHIKDE---WLCNQISKFPLLESLLIAGCDDLKS----INI----- 317 (395)
Q Consensus 256 L~l~~~~~~~------~~~~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~l~~----~~~----- 317 (395)
|.++++.... .+..+..+++|++|+|++|.+++. .+...+..+++|++|+|++|.--.. +..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 8888776331 111456678888888888887643 3344567778888888888762211 111
Q ss_pred CCCccCEEecccCCCch----hhh----hhCCCcceeEEeeeeeecce
Q 016087 318 SSRSLKLLEIYDCLRLV----EVK----IAASSLSIFKYSGDVISFQL 357 (395)
Q Consensus 318 ~~~~Lk~L~L~~~~~l~----~l~----~~~~~L~~L~~~~~~~~~~~ 357 (395)
.+++|++|+|+++.--. .++ .++++|++|++++|+++...
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 26788888887654222 122 45788888888888776544
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=1.3e-12 Score=131.90 Aligned_cols=195 Identities=19% Similarity=0.088 Sum_probs=121.2
Q ss_pred CCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChH-HHHHHHcCCCCccEEeeecCCCCce-EeeCCCCCcceEE
Q 016087 160 CSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDL-VLQSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFE 236 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~~L~~L~ 236 (395)
.+++|+.|++++|... ......+++|++|+++++.+... .....+..++.|++|++++|..... ..+..+++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 4444555555444221 11222566666666666665211 1122355677777777777642211 1234567888888
Q ss_pred ecccc--ccch--hhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCC
Q 016087 237 VCDAE--ELQR--LCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDD 311 (395)
Q Consensus 237 i~~c~--~l~~--l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 311 (395)
+++|. .... ....+++|++|+++++.... .+..++.+++|++|++++|.+.+..+...+..+++|+.|++++|..
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 88775 2211 22367888888888876332 3344677889999999888876543455667889999999998853
Q ss_pred Cchh---ccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeeee
Q 016087 312 LKSI---NISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 312 l~~~---~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~~ 354 (395)
.... ...+++|++|+++++.-. +.....+++|+.|++++|+++
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 3222 235688999999876422 233466889999999999875
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=4.1e-12 Score=123.60 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=113.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccC--C-C--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES--P-R--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~--~-~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le 211 (395)
+++++|++..... ....|..+..+++|++|++++|.+.. + . ...+++|++|+|+++.+.......++..+++|+
T Consensus 79 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 79 SSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred ccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 4666666643221 12224455567777777777766541 1 1 225677777777777763322222355677777
Q ss_pred EEeeecCCCCce---------------Ee---------------------eCCCCCcceEEeccccccch----h-----
Q 016087 212 YLSLQLCPGLKN---------------LE---------------------LSGLTKLNKFEVCDAEELQR----L----- 246 (395)
Q Consensus 212 ~L~l~~c~~~~~---------------~~---------------------i~~~~~L~~L~i~~c~~l~~----l----- 246 (395)
+|++++|..... +. +..+++|+.|++++|.-... +
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 777776632100 00 00113566666665530000 0
Q ss_pred ---------------------------------hccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHH
Q 016087 247 ---------------------------------CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 247 ---------------------------------~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
....++|++|+++++.... .+..++.+++|++|+++++.+.... .
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~ 316 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-D 316 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-T
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-h
Confidence 0011345555554443221 1223556677777777777655321 2
Q ss_pred HHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCCc---hhhhhhCCCcceeEEeeeeeec
Q 016087 293 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRL---VEVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~l---~~l~~~~~~L~~L~~~~~~~~~ 355 (395)
..+..+++|+.|+++++.--.. ....+++|++|+|+++.-- +.....+++|+.|++++|.+..
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 2445677777777777642211 1234577777777755321 1223557777777777776543
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=2.6e-12 Score=126.30 Aligned_cols=207 Identities=19% Similarity=0.068 Sum_probs=143.3
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++.|++...... ...|..+..+++|++|+|++|.+. .+....+++|++|+|++|.++. +...+.|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 37888888654332 122346678899999999998775 2224478999999999998843 234589999999
Q ss_pred ecCCCCceEeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcc-ccccc-ccccccceeEecccccchHH
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQ-CKFNL-ASCKFLKYLRFALTHIKDEW 290 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~-~~~~~-~~~~~L~~L~L~~~~~~~~~ 290 (395)
++|... .+....+++|+.|++++|. .+.... ..+++|++|+++++.... .+..+ +.+++|+.|+|++|.++..
T Consensus 107 ~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 998643 3344567899999999886 222222 357899999999887433 22233 3678999999999987643
Q ss_pred HHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeee
Q 016087 291 LCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 291 ~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
.....+++|+.|+|+++.-- ......+++|+.|+|+++. .++.....+++|+.|++++|++.
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred --cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 22345889999999987522 1122356889999998643 23333456789999999998875
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.35 E-value=1.2e-12 Score=135.95 Aligned_cols=192 Identities=15% Similarity=0.049 Sum_probs=134.4
Q ss_pred CCcEEEEEe-cCCCcccccccccCCCCccEEEEcceecc--CCC---ccCCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087 138 NVKELSLEL-LGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR---SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 138 ~l~~L~l~~-~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~---~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le 211 (395)
++++|++.. ...+...+|..+..+++|++|+|++|.+. .+. ...+++|++|+|++|.+.......++..+++|+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 455555433 33334566778889999999999998875 333 338999999999999874322222336789999
Q ss_pred EEeeecCCCCceEe-----eCCCCCcceEEeccccccchhh-ccCCceeEEEEeCCCCcccccccccccccceeEecccc
Q 016087 212 YLSLQLCPGLKNLE-----LSGLTKLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH 285 (395)
Q Consensus 212 ~L~l~~c~~~~~~~-----i~~~~~L~~L~i~~c~~l~~l~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 285 (395)
+|++++|....... +..+++|++|++++|.-..... ..+++|++|+++++........++.+++|++|+++++.
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 99999996432211 5678899999999986211111 47899999999998743322238889999999999999
Q ss_pred cchHHHHHHhccCCCccEEEeeCCCCCchhc-cCCCccCEEecccC
Q 016087 286 IKDEWLCNQISKFPLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDC 330 (395)
Q Consensus 286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~Lk~L~L~~~ 330 (395)
+++. +...+..+++|++|++++|.....+. ..+++|++|+++++
T Consensus 235 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 235 LSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp CCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred CCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCC
Confidence 8754 35567899999999999985332211 13455666655543
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.34 E-value=3.7e-12 Score=129.41 Aligned_cols=214 Identities=10% Similarity=0.021 Sum_probs=133.3
Q ss_pred CCCcEEEEEecCCCcc----------------ccccccc--CCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeee-
Q 016087 137 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD- 194 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~- 194 (395)
.++++|++........ .+|..+. .+++|++|+|++|.+. .|... .+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6899999976443210 1888888 9999999999998765 44433 79999999999998
Q ss_pred cChHHHHHHH------cCCCCccEEeeecCCCCceE---eeCCCCCcceEEecccc---ccchhhccCCceeEEEEeCCC
Q 016087 195 ATDLVLQSLL------IGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE---ELQRLCIIAQDVQEVSIQGPL 262 (395)
Q Consensus 195 ~~~~~l~~l~------~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~---~l~~l~~~~p~L~~L~l~~~~ 262 (395)
++...+..-+ ..+++|+.|++.+|....-. .+..+++|+.|+++++. .++ .....++|++|+++++.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 6652233223 34589999999998654211 35677889999998885 222 11245788888888776
Q ss_pred Ccccccccccccc-cceeEecccccchHHHHHHhccC--CCccEEEeeCCCCCchhcc----------CCCccCEEeccc
Q 016087 263 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKF--PLLESLLIAGCDDLKSINI----------SSRSLKLLEIYD 329 (395)
Q Consensus 263 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~--~~L~~L~L~~~~~l~~~~~----------~~~~Lk~L~L~~ 329 (395)
...++..+..+++ |++|+++++.++ .+...+... ++|+.|+++++.....+.. .+++|++|++++
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 4444445666777 888888777765 222222222 3677777766542221111 234566666654
Q ss_pred CC--Cch-hhhhhCCCcceeEEeeeee
Q 016087 330 CL--RLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 330 ~~--~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
+. .++ .+...+++|+.|++++|.+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCC
Confidence 32 111 1223355555555555544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=3.4e-12 Score=125.06 Aligned_cols=215 Identities=17% Similarity=0.080 Sum_probs=136.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCC-c-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~-~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
+++++|++..... ....|..+.++++|++|+|+++.+. .+. . ..+++|++|+|+++.+... ....+..+++|+.|
T Consensus 56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence 5777777754322 1122455667888888888887765 222 2 3678888888888877321 11235678888888
Q ss_pred eeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccc
Q 016087 214 SLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 214 ~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 287 (395)
++.+|..... ..+..+++|+.|++.+|. .+..- ...+++|+.|+++++..... ...+..+++|+.|+++++...
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 8888753311 134567788888888875 22211 23678888888888763332 234667888888888877643
Q ss_pred hHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087 288 DEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 288 ~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~ 355 (395)
...... .....+|+.|+++++. ++.+ ...+++|+.|+|+++. .+. .....+++|+.|+++++.+..
T Consensus 214 ~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 214 DTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp CEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred cccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 322111 2233488999988874 2222 2356899999998654 111 234678999999999987643
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=7.6e-12 Score=121.92 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=155.5
Q ss_pred ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceeccCCCccCCCCC
Q 016087 106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLESPRSVKLSSL 185 (395)
Q Consensus 106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~L 185 (395)
..++.+.+....-. .++ ....+++++|++...... .++ +..+++|++|+++++.+..-....+++|
T Consensus 64 ~~L~~L~Ls~n~l~------~~~----~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L 129 (457)
T 3bz5_A 64 TGLTKLICTSNNIT------TLD----LSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129 (457)
T ss_dssp TTCSEEECCSSCCS------CCC----CTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTC
T ss_pred CCCCEEEccCCcCC------eEc----cccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCeecCCCCCcC
Confidence 47788777644211 111 112368888888654432 233 6678999999999988763224478999
Q ss_pred cEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhc-cCCceeEEEEeCCCCc
Q 016087 186 TKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPF 264 (395)
Q Consensus 186 k~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~ 264 (395)
++|+++++.++.- . +..+++|++|++.+|.....+.+..+++|+.|+++++. +..+.+ .+++|+.|.++++...
T Consensus 130 ~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 130 TYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCC
Confidence 9999999998442 1 67899999999999976666667788899999999885 333333 6789999999988744
Q ss_pred ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCc----------cCEEecccCCCch
Q 016087 265 QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRS----------LKLLEIYDCLRLV 334 (395)
Q Consensus 265 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~----------Lk~L~L~~~~~l~ 334 (395)
.+ .++.+++|+.|+++++.++.- . +..+++|+.|+++++.--......+++ |+.|+++++....
T Consensus 205 ~~--~l~~l~~L~~L~Ls~N~l~~i---p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL--DLNQNIQLTFLDCSSNKLTEI---D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC--CCTTCTTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee--ccccCCCCCEEECcCCccccc---C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 33 477889999999999987762 2 678899999999987422111223344 4555555555444
Q ss_pred hhh-hhCCCcceeEEeeeee
Q 016087 335 EVK-IAASSLSIFKYSGDVI 353 (395)
Q Consensus 335 ~l~-~~~~~L~~L~~~~~~~ 353 (395)
.++ ..|++|+.|++++|..
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTT
T ss_pred cccccccccCCEEECCCCcc
Confidence 444 4689999999999864
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.34 E-value=4e-13 Score=124.35 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=127.4
Q ss_pred CCCCccEEEEcceecc--CCCc---cCCCCCcEEEeeeeecChH--HHHHHHc-CCCCccEEeeecCCCCce--EeeCCC
Q 016087 160 CSNSIEILTLAGLKLE--SPRS---VKLSSLTKLFLMRVDATDL--VLQSLLI-GCPLIEYLSLQLCPGLKN--LELSGL 229 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~~--~~~~---~~~~~Lk~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~l~~c~~~~~--~~i~~~ 229 (395)
.+++|++|+|++|.+. .+.. ..+++|++|+|+++.++.. .+..+.. ..++|++|++++|..... ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6789999999998875 3332 4789999999999998432 2322211 138999999999864321 134567
Q ss_pred CCcceEEeccccccch------hh-ccCCceeEEEEeCCCCcccc----cccccccccceeEecccccchHHHHHHhccC
Q 016087 230 TKLNKFEVCDAEELQR------LC-IIAQDVQEVSIQGPLPFQCK----FNLASCKFLKYLRFALTHIKDEWLCNQISKF 298 (395)
Q Consensus 230 ~~L~~L~i~~c~~l~~------l~-~~~p~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 298 (395)
++|+.|+++++.-... +. ...++|++|+++++...... ..+..+++|++|++++|.+++......+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8899999988852211 11 35688888888887643211 1234568888888888877653212334556
Q ss_pred CCccEEEeeCCCCCchhccCC-CccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087 299 PLLESLLIAGCDDLKSINISS-RSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 299 ~~L~~L~L~~~~~l~~~~~~~-~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~ 355 (395)
++|+.|+++++. ++.+.... ++|++|+++++. .++. ...+++|+.|++++|+++.
T Consensus 253 ~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 888888888875 23333222 688888887542 2223 4568888888888887654
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=2.1e-12 Score=130.40 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCccc-c-cccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087 228 GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-K-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES 303 (395)
Q Consensus 228 ~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 303 (395)
.+++|+.|++++|. .+......+++|+.|+++++..... + ..+..+++|++|++++|.+... ....+..+++|++
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCE
Confidence 34455555555543 1111112345555555555542211 1 2344566666666666654432 1233456677777
Q ss_pred EEeeCCCCCc----hhccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeec
Q 016087 304 LLIAGCDDLK----SINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 304 L~L~~~~~l~----~~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~ 355 (395)
|+++++.... .....+++|+.|+++++.-.. .....+++|++|++++|++..
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 7776664222 122345788888887663221 334568888888888887643
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=9.1e-12 Score=118.80 Aligned_cols=212 Identities=13% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc-CCCc--cCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE-SPRS--VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~-~~~~--~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
+++++|++.... ...+ |..+..+++|++|+++++.+. .+.. ..+++|++|+++++.+..-. ...+..+++|++
T Consensus 93 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred CCcCEEECCCCC--CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence 455666654322 1222 223345566666666666554 2221 24666666666666552110 112345566666
Q ss_pred EeeecCCCCceEeeCCCC-------------------CcceEEeccccccchhh-ccCCceeEEEEeCCCCccccccccc
Q 016087 213 LSLQLCPGLKNLELSGLT-------------------KLNKFEVCDAEELQRLC-IIAQDVQEVSIQGPLPFQCKFNLAS 272 (395)
Q Consensus 213 L~l~~c~~~~~~~i~~~~-------------------~L~~L~i~~c~~l~~l~-~~~p~L~~L~l~~~~~~~~~~~~~~ 272 (395)
|++++|... ...+..++ +|+.|+++++. +..+. ...++|+.|+++++..... ..+..
T Consensus 170 L~l~~n~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 170 LQLSSNRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp EECCSSCCS-BCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred EECCCCcCC-ccccccccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCccc-HHHcC
Confidence 666655321 11222233 44444444442 11111 1235666666666653322 23556
Q ss_pred ccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCC--CchhhhhhCCCcceeEE
Q 016087 273 CKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKY 348 (395)
Q Consensus 273 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~ 348 (395)
+++|++|+++++.+... ....+..+++|+.|+++++.-- ......+++|+.|+++++. .++.-...+++|+.|++
T Consensus 247 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp CTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred CCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence 67777777777765532 1234556777777777775421 1112245777777777552 22222345677777777
Q ss_pred eeeeeec
Q 016087 349 SGDVISF 355 (395)
Q Consensus 349 ~~~~~~~ 355 (395)
++|++..
T Consensus 326 ~~N~i~~ 332 (390)
T 3o6n_A 326 DHNSIVT 332 (390)
T ss_dssp CSSCCCC
T ss_pred CCCccce
Confidence 7776543
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=5.2e-13 Score=123.09 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=145.2
Q ss_pred CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceeccC-----CCccCCCCCcEEEeeeeecChHHHHHHHcCCCCc
Q 016087 137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLES-----PRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLI 210 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~~-----~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~L 210 (395)
+++++|++.... ...+|.. +..+++|++|+|+++.+.. .....+++|++|+++++.+.. +...+..+++|
T Consensus 28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 467777775533 3356654 3578899999999887651 122368899999999888732 11125678999
Q ss_pred cEEeeecCCCCce---EeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCCCcc--cccccccccccceeEec
Q 016087 211 EYLSLQLCPGLKN---LELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFA 282 (395)
Q Consensus 211 e~L~l~~c~~~~~---~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~ 282 (395)
++|++++|..... ..+..+++|+.|+++++.- ........++|++|+++++.... .+..+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 9999988743211 1345678999999998851 11222357899999998876332 44557788999999999
Q ss_pred ccccchHHHHHHhccCCCccEEEeeCCCCCc--h-hccCCCccCEEecccCCCch---hhhhhC-CCcceeEEeeeeeec
Q 016087 283 LTHIKDEWLCNQISKFPLLESLLIAGCDDLK--S-INISSRSLKLLEIYDCLRLV---EVKIAA-SSLSIFKYSGDVISF 355 (395)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~-~~~~~~~Lk~L~L~~~~~l~---~l~~~~-~~L~~L~~~~~~~~~ 355 (395)
++.++... ...+..+++|++|+++++.... . ....+++|+.|+++++.-.. .....+ ++|+.|++++|++..
T Consensus 184 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 184 QCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 99876422 3356778999999999875322 1 22346899999998764222 223445 489999999998753
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.33 E-value=3.9e-12 Score=123.78 Aligned_cols=218 Identities=14% Similarity=0.057 Sum_probs=148.3
Q ss_pred CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCc--cCCCCCcEEEeeeeecCh---HHHHHH----
Q 016087 137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRS--VKLSSLTKLFLMRVDATD---LVLQSL---- 203 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~--~~~~~Lk~L~L~~~~~~~---~~l~~l---- 203 (395)
.++++|++..+.... ..+. .+..+++|++|+|++|.+. .+.. ..+++|++|+++++.+.. ..+..+
T Consensus 103 ~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 103 ANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TTCCEEECTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred ccCCEEeCCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 688998886543321 1222 2667899999999999876 2432 379999999999998732 111111
Q ss_pred --------------------------HcCCCCccEEeeecCCCC----------------ceEeeC--------------
Q 016087 204 --------------------------LIGCPLIEYLSLQLCPGL----------------KNLELS-------------- 227 (395)
Q Consensus 204 --------------------------~~~~p~Le~L~l~~c~~~----------------~~~~i~-------------- 227 (395)
+..++.|++|++++|... +.+.+.
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 123467888888877431 111111
Q ss_pred -----------CCCCcceEEecccc--c-cchhhccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHH
Q 016087 228 -----------GLTKLNKFEVCDAE--E-LQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 228 -----------~~~~L~~L~i~~c~--~-l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
..++|+.|+++++. . .......+++|++|+++++..... +..+..+++|++|++++|.+... ..
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-Ch
Confidence 12578899998885 1 122233678999999999874433 33577899999999999987542 23
Q ss_pred HHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeeecc
Q 016087 293 NQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
..+..+++|++|+++++..-.. ....+++|++|+|+++. .++ .....+++|+.|++++|++...
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 4568899999999999853322 22356999999998753 222 3346789999999999987544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=4e-12 Score=128.18 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=53.8
Q ss_pred ceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEeccc
Q 016087 252 DVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYD 329 (395)
Q Consensus 252 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~ 329 (395)
+|+.|+++++..... ..++.+++|+.|+|++|.+... ....+..+++|+.|+|+++.-- ......+++|+.|+|++
T Consensus 233 ~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 233 ELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence 444455544432221 2345566777777777665532 1234456677777777765311 11122356777777765
Q ss_pred CC--CchhhhhhCCCcceeEEeeeeee
Q 016087 330 CL--RLVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 330 ~~--~l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
+. .++.-...+++|+.|++++|.+.
T Consensus 311 N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 311 NHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CCCCccCcccccCCCCCEEECCCCCCC
Confidence 43 22222345667777777776653
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=2.8e-12 Score=124.97 Aligned_cols=84 Identities=20% Similarity=0.133 Sum_probs=46.3
Q ss_pred hCCCcEEEEEecCCCcc---cccccccCCCCccEEEEcceeccC--CC--ccCCC----CCcEEEeeeeecCh---HHHH
Q 016087 136 GCNVKELSLELLGNPRF---NLPEIILCSNSIEILTLAGLKLES--PR--SVKLS----SLTKLFLMRVDATD---LVLQ 201 (395)
Q Consensus 136 ~~~l~~L~l~~~~~~~~---~l~~~l~~~~~L~~L~L~~~~~~~--~~--~~~~~----~Lk~L~L~~~~~~~---~~l~ 201 (395)
.++++.+++..+..... .++..+..+++|++|+|+++.+.. .. ...++ +|++|+|++|.+++ ..+.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 35677777765443221 444555566677777777665431 00 01222 57777777666643 2344
Q ss_pred HHHcCCCCccEEeeecCC
Q 016087 202 SLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 202 ~l~~~~p~Le~L~l~~c~ 219 (395)
..+..+++|++|++++|.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHTTSCTTCCEEECCSSB
T ss_pred HHHccCCceeEEECCCCc
Confidence 455666677777776664
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=1.6e-11 Score=117.11 Aligned_cols=210 Identities=14% Similarity=0.005 Sum_probs=144.0
Q ss_pred CCCcEEEEEecCCCcccccccc-cCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
+++++|++.... ...+|..+ ..+++|++|+++++.+. .+. ...+++|++|+++++.++... +..++.|+.
T Consensus 117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~ 190 (390)
T 3o6n_A 117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 190 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence 577888776533 34666654 46888889988888765 222 236788888888888874321 344666666
Q ss_pred EeeecCCCC------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCccc-ccccc
Q 016087 213 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQC-KFNLA 271 (395)
Q Consensus 213 L~l~~c~~~------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~ 271 (395)
|++.++... ..+.....++|+.|+++++. .. ......++|++|+++++..... +..+.
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 666554221 11222334689999999986 22 2223789999999999874432 44577
Q ss_pred cccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc---cCCCccCEEecccCCCchhhhhhCCCcceeEE
Q 016087 272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN---ISSRSLKLLEIYDCLRLVEVKIAASSLSIFKY 348 (395)
Q Consensus 272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~---~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~ 348 (395)
.+++|++|+++++.++.- ......+++|+.|+++++. +..+. ..+++|+.|+++++.-..--...+++|+.|++
T Consensus 270 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l 346 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 346 (390)
T ss_dssp TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeCchhhccCCEEEc
Confidence 899999999999987642 2234678999999999985 33332 34689999999876422212467899999999
Q ss_pred eeeeeecc
Q 016087 349 SGDVISFQ 356 (395)
Q Consensus 349 ~~~~~~~~ 356 (395)
++|++...
T Consensus 347 ~~N~~~~~ 354 (390)
T 3o6n_A 347 SHNDWDCN 354 (390)
T ss_dssp CSSCEEHH
T ss_pred CCCCccch
Confidence 99987543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=2.2e-11 Score=113.40 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=75.1
Q ss_pred cccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc----eEeeCCC
Q 016087 155 PEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK----NLELSGL 229 (395)
Q Consensus 155 ~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~----~~~i~~~ 229 (395)
|..+..+++|++|+++++.+. .+.. .+++|++|+++++.+..-. ...+..+++|+.|++.+|.... ...+..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSS-CCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChh-hcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 334445555556655555443 2211 2255566665555552111 1224455556666665553310 1112334
Q ss_pred CCcceEEeccccccchhhc-cCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEee
Q 016087 230 TKLNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 230 ~~L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
++|+.|+++++. +..+.. ..++|++|+++++..... +..+..+++|+.|+++++.++... ...+..+++|+.|+++
T Consensus 171 ~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 171 KKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLN 248 (330)
T ss_dssp TTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECC
T ss_pred CCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECC
Confidence 555555555553 111111 124555555555542221 223444555555555555543211 1123445555555555
Q ss_pred CCCCCchh---ccCCCccCEEeccc
Q 016087 308 GCDDLKSI---NISSRSLKLLEIYD 329 (395)
Q Consensus 308 ~~~~l~~~---~~~~~~Lk~L~L~~ 329 (395)
++. +..+ ...+++|++|++++
T Consensus 249 ~N~-l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 249 NNK-LVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp SSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred CCc-CccCChhhccCCCcCEEECCC
Confidence 542 1111 12335555555543
No 44
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=5.9e-12 Score=119.97 Aligned_cols=205 Identities=15% Similarity=0.116 Sum_probs=145.9
Q ss_pred cccccccccCCCCccEEEEcceeccC------C-CccCCCCCcEEEeeeeecC------hHH---HHHHHcCCCCccEEe
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLES------P-RSVKLSSLTKLFLMRVDAT------DLV---LQSLLIGCPLIEYLS 214 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~~------~-~~~~~~~Lk~L~L~~~~~~------~~~---l~~l~~~~p~Le~L~ 214 (395)
...++..+..+++|++|+|++|.+.. + ....+++|++|+|++|.++ ... +...+..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34566667779999999999998761 1 1226999999999998542 122 334457899999999
Q ss_pred eecCCCCc----eE--eeCCCCCcceEEeccccc----cchhh---ccC---------CceeEEEEeCCCCc--ccc---
Q 016087 215 LQLCPGLK----NL--ELSGLTKLNKFEVCDAEE----LQRLC---IIA---------QDVQEVSIQGPLPF--QCK--- 267 (395)
Q Consensus 215 l~~c~~~~----~~--~i~~~~~L~~L~i~~c~~----l~~l~---~~~---------p~L~~L~l~~~~~~--~~~--- 267 (395)
+++|.... .+ .+..+++|++|++++|.- ...+. ... ++|++|.++++... .++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99986432 11 234578999999999961 11111 122 89999999998742 223
Q ss_pred cccccccccceeEecccccchHHHHH----HhccCCCccEEEeeCCCCC----chh---ccCCCccCEEecccCCCch--
Q 016087 268 FNLASCKFLKYLRFALTHIKDEWLCN----QISKFPLLESLLIAGCDDL----KSI---NISSRSLKLLEIYDCLRLV-- 334 (395)
Q Consensus 268 ~~~~~~~~L~~L~L~~~~~~~~~~~~----l~~~~~~L~~L~L~~~~~l----~~~---~~~~~~Lk~L~L~~~~~l~-- 334 (395)
..+..+++|++|++++|.+++..+.. .+..+++|+.|+|+++..- ..+ ...+++|++|+|++|.--.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 24567899999999999998765333 5568999999999998731 222 3456899999999775221
Q ss_pred --hhhh-----hCCCcceeEEeeeeeec
Q 016087 335 --EVKI-----AASSLSIFKYSGDVISF 355 (395)
Q Consensus 335 --~l~~-----~~~~L~~L~~~~~~~~~ 355 (395)
.++. .+++|++|++++|.++.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 1222 28999999999998866
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=5.4e-12 Score=123.98 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=139.6
Q ss_pred CCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087 161 SNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i 237 (395)
+++|+.|+|+++.+. . +.. ..+++|++|+|++|.++...- +..+++|+.|++++|.. .. +...++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~--l~~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-QE--LLVGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEE-EE--EEECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcC-CC--CCCCCCcCEEEC
Confidence 458999999999876 2 223 389999999999999832111 77899999999999842 22 223479999999
Q ss_pred ccccccchh-hccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh
Q 016087 238 CDAEELQRL-CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI 315 (395)
Q Consensus 238 ~~c~~l~~l-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 315 (395)
++|. +..+ ....++|++|+++++.... .+..++.+++|+.|+|++|.++......+...+++|+.|+|+++. +..+
T Consensus 107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 184 (487)
T 3oja_A 107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (487)
T ss_dssp CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence 9986 2222 2256899999999987443 344677899999999999998765545555678999999999986 3222
Q ss_pred c--cCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087 316 N--ISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 316 ~--~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~ 355 (395)
. ..+++|+.|+|+++. .++.-...+++|+.|++++|.++.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence 2 236899999998653 333334678999999999998763
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=1.2e-11 Score=128.83 Aligned_cols=171 Identities=11% Similarity=0.015 Sum_probs=116.4
Q ss_pred CCCcEEEEEecCCCcc----------------ccccccc--CCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeee-
Q 016087 137 CNVKELSLELLGNPRF----------------NLPEIIL--CSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVD- 194 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~- 194 (395)
++++.|+|........ .+|..+. .+++|++|+|++|.+. .|... .+++|++|+|++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 6899999976443221 2888877 8999999999998754 44333 89999999999998
Q ss_pred cChH----HHHHH---HcCCCCccEEeeecCCCCceE---eeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCC
Q 016087 195 ATDL----VLQSL---LIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPL 262 (395)
Q Consensus 195 ~~~~----~l~~l---~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~ 262 (395)
++.. .+..+ +..+|+|+.|++++|....-. .+..+++|+.|+++++. .++ ....+++|+.|+++++.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc
Confidence 6552 22222 245679999999998654211 24577899999999885 233 11256788888888877
Q ss_pred Ccccccccccccc-cceeEecccccchHHHHHHhccCC--CccEEEeeCCC
Q 016087 263 PFQCKFNLASCKF-LKYLRFALTHIKDEWLCNQISKFP--LLESLLIAGCD 310 (395)
Q Consensus 263 ~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~ 310 (395)
...++..+..+++ |+.|+|++|.++ .+...+...+ +|+.|+++++.
T Consensus 607 l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 607 IEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred cccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCc
Confidence 5455555677777 888888887765 2222333332 36666666653
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.29 E-value=1.5e-11 Score=124.04 Aligned_cols=178 Identities=21% Similarity=0.218 Sum_probs=126.8
Q ss_pred cccccc-ccCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE---e
Q 016087 152 FNLPEI-ILCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---E 225 (395)
Q Consensus 152 ~~l~~~-l~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~ 225 (395)
..++.. +..+++|+.|+++++.+. .|.. ..+++|++|+++++.+.... ...+..++.|+.|++.+|.....+ .
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhh
Confidence 344443 556899999999998876 4433 37899999999999984321 123677999999999998644222 2
Q ss_pred eCCCCCcceEEecccc--ccc---hhhccCCceeEEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCC
Q 016087 226 LSGLTKLNKFEVCDAE--ELQ---RLCIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFP 299 (395)
Q Consensus 226 i~~~~~L~~L~i~~c~--~l~---~l~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 299 (395)
+..+++|+.|+++++. ... .....+++|++|+++++.... .+..+..+++|++|+++++.+........+..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 4567899999999986 221 122367999999999987433 2345778899999999999876543344567899
Q ss_pred CccEEEeeCCCCCch---hccCCCccCEEecccC
Q 016087 300 LLESLLIAGCDDLKS---INISSRSLKLLEIYDC 330 (395)
Q Consensus 300 ~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~ 330 (395)
+|+.|+++++..... ....+++|++|+++++
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 999999999753221 1234567777777654
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.28 E-value=2.1e-11 Score=122.90 Aligned_cols=210 Identities=14% Similarity=0.004 Sum_probs=144.7
Q ss_pred CCCcEEEEEecCCCcccccccc-cCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPEII-LCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l-~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
++++.|++.... ...+|..+ ..+++|++|+|++|.+. .+. ...+++|++|++++|.+.... +..++.|+.
T Consensus 123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 578888886543 34666654 57889999999988775 232 237889999999988884321 445677777
Q ss_pred EeeecCCCC------------------ceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcc-cccccc
Q 016087 213 LSLQLCPGL------------------KNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQ-CKFNLA 271 (395)
Q Consensus 213 L~l~~c~~~------------------~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~-~~~~~~ 271 (395)
|++.+|... ..+.....++|+.|++++|. .. .....+++|+.|+++++.... .+..++
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 777665321 11111223578888888775 22 222368999999999987443 345678
Q ss_pred cccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCC--chhccCCCccCEEecccCCCchhhhhhCCCcceeEEe
Q 016087 272 SCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDL--KSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYS 349 (395)
Q Consensus 272 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l--~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~ 349 (395)
.+++|+.|+|++|.++. +......+|+|+.|+|+++... ......+++|+.|+|+++.-...-...+++|+.|+++
T Consensus 276 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 353 (597)
T ss_dssp TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEee
Confidence 89999999999998764 2333466899999999998532 2222346899999999765322224678999999999
Q ss_pred eeeeec
Q 016087 350 GDVISF 355 (395)
Q Consensus 350 ~~~~~~ 355 (395)
+|++..
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 998753
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=1.9e-12 Score=126.20 Aligned_cols=216 Identities=20% Similarity=0.222 Sum_probs=125.8
Q ss_pred CCcEEEEEecCCCcccccccccCCCCccEEEEcceeccC------CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCC--
Q 016087 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLES------PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCP-- 208 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~~------~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p-- 208 (395)
.+++|++.........+...+..+++|++|++++|.+.. +.. ..+++|++|+|+++.+++..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 466777765443333444445678999999999998651 122 26899999999999998777777777777
Q ss_pred --CccEEeeecCCCCc------eEeeCCCCCcceEEecccc----ccchhhc----cCCceeEEEEeCCCCcc-----cc
Q 016087 209 --LIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAE----ELQRLCI----IAQDVQEVSIQGPLPFQ-----CK 267 (395)
Q Consensus 209 --~Le~L~l~~c~~~~------~~~i~~~~~L~~L~i~~c~----~l~~l~~----~~p~L~~L~l~~~~~~~-----~~ 267 (395)
+|++|++++|.... ...+..+++|++|++++|. ....+.. ..++|++|+++++.... +.
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 79999999996431 1134567788888888875 1111111 13457777766654221 11
Q ss_pred cccccccccceeEecccccchHHH--------------------------------HHHhccCCCccEEEeeCCCCCchh
Q 016087 268 FNLASCKFLKYLRFALTHIKDEWL--------------------------------CNQISKFPLLESLLIAGCDDLKSI 315 (395)
Q Consensus 268 ~~~~~~~~L~~L~L~~~~~~~~~~--------------------------------~~l~~~~~~L~~L~L~~~~~l~~~ 315 (395)
..+..+++|++|+++++.+.+... ...+..+++|++|+++++. +...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence 122334555555555554443322 2333445555555555543 2111
Q ss_pred ---------ccCCCccCEEecccCCC-------chhhhhhCCCcceeEEeeeeee
Q 016087 316 ---------NISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 316 ---------~~~~~~Lk~L~L~~~~~-------l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
...+++|++|++++|.- +......+++|++|++++|.+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 11245666666665521 1112234677777777777653
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.27 E-value=3.3e-12 Score=118.40 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=139.8
Q ss_pred CCCCccEEEEcceeccC-C-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087 160 CSNSIEILTLAGLKLES-P-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 236 (395)
Q Consensus 160 ~~~~L~~L~L~~~~~~~-~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~ 236 (395)
.+++|++|+|+++.+.. + .. ..+++|++|+|++|.+.... . +..+++|++|++++|.. . .+...++|+.|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~--~l~~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-Q--ELLVGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-E--EEEECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-c--cccCCCCcCEEE
Confidence 46789999999998762 2 22 37999999999999983211 1 67899999999999852 2 223347999999
Q ss_pred eccccccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch
Q 016087 237 VCDAEELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS 314 (395)
Q Consensus 237 i~~c~~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 314 (395)
++++. +..+ ....++|++|+++++..... ...++.+++|++|+++++.++......+...+++|+.|+++++. ++.
T Consensus 106 l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 106 AANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 99985 2222 22578999999999874443 34577889999999999998765445555678999999999986 322
Q ss_pred hc--cCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeec
Q 016087 315 IN--ISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 315 ~~--~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~ 355 (395)
+. ..+++|+.|+++++. .++.-...+++|+.|++++|.+..
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence 22 236899999998653 333335678999999999998753
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.27 E-value=3.8e-11 Score=110.79 Aligned_cols=164 Identities=21% Similarity=0.149 Sum_probs=123.3
Q ss_pred hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087 136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 214 (395)
.++++.|++..+. ...++. +..+++|++|++++|.+. .+....+++|++|++++|.+..- .. +..+++|+.|+
T Consensus 62 l~~L~~L~L~~n~--i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQ--ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSC--CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCc--CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence 3789999986543 334554 778999999999999877 33344899999999999999432 12 78899999999
Q ss_pred eecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087 215 LQLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 215 l~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
+++|.......+..+++|+.|++++|. .+.. ...+++|+.|+++++....+.. +..+++|++|++++|.+.+..
T Consensus 136 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-- 211 (308)
T 1h6u_A 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-- 211 (308)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--
T ss_pred CCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--
Confidence 999965432235677899999999885 3333 2367899999998887443332 677889999999998876543
Q ss_pred HHhccCCCccEEEeeCCC
Q 016087 293 NQISKFPLLESLLIAGCD 310 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~ 310 (395)
-+..+++|+.|++++++
T Consensus 212 -~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGTTCTTCCEEEEEEEE
T ss_pred -cccCCCCCCEEEccCCe
Confidence 26788999999998864
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=2.6e-11 Score=112.84 Aligned_cols=212 Identities=13% Similarity=0.038 Sum_probs=147.8
Q ss_pred CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
++++.+++.... ...++. .+..+++|++|+|++|.+. .+... .+++|++|+++++.+..- . ....+.|++
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccE
Confidence 477887775533 334444 5667999999999998876 23333 789999999999987421 0 122479999
Q ss_pred EeeecCCCCceE--eeCCCCCcceEEeccccc----cch-hhccCCceeEEEEeCCCCcccccccccccccceeEecccc
Q 016087 213 LSLQLCPGLKNL--ELSGLTKLNKFEVCDAEE----LQR-LCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH 285 (395)
Q Consensus 213 L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~~----l~~-l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~ 285 (395)
|++++|...... .+..+++|+.|+++++.- ... ....+++|++|+++++....++..+ .++|++|+++++.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCc
Confidence 999998543211 246788999999998851 111 1236789999999988744333222 3899999999998
Q ss_pred cchHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecce
Q 016087 286 IKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQL 357 (395)
Q Consensus 286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~~ 357 (395)
++... ...+..+++|+.|+++++..-.. ....+++|++|+++++. .++.....+++|+.|++++|+++...
T Consensus 204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 76432 34567889999999998753221 23356899999998763 23333467899999999999875543
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=124.11 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=108.6
Q ss_pred ccccccCCCCccEEEEcceecc-CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCC
Q 016087 154 LPEIILCSNSIEILTLAGLKLE-SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTK 231 (395)
Q Consensus 154 l~~~l~~~~~L~~L~L~~~~~~-~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~ 231 (395)
.|..+..+++|+.|+++++.+. .+... .+ +|++|++.++.+.. +. ...++.|+.|++.+|..........+++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCC
Confidence 4455667899999999998876 33333 55 99999999998841 11 1356777777777765433222244556
Q ss_pred cceEEecccc--cc---chhhccCCceeEEEEeCCCCccccc-------------------------ccccccccceeEe
Q 016087 232 LNKFEVCDAE--EL---QRLCIIAQDVQEVSIQGPLPFQCKF-------------------------NLASCKFLKYLRF 281 (395)
Q Consensus 232 L~~L~i~~c~--~l---~~l~~~~p~L~~L~l~~~~~~~~~~-------------------------~~~~~~~L~~L~L 281 (395)
|+.|++++|. .. ......+++|++|+++++.....+. .+..+++|++|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 6666666553 11 1112244555555555543222121 2344555555555
Q ss_pred cccccchHHHHHHhccCCCccEEEeeCCCCC----chhccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeee
Q 016087 282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDL----KSINISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~ 354 (395)
+++.+... ....+..+++|+.|++++|... ......+++|+.|+|+++.-.. .....+++|+.|++++|.+.
T Consensus 429 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 429 SHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 55543321 1223445566666666665421 1122345677777776653211 22356778888888877654
Q ss_pred c
Q 016087 355 F 355 (395)
Q Consensus 355 ~ 355 (395)
.
T Consensus 508 ~ 508 (570)
T 2z63_A 508 S 508 (570)
T ss_dssp C
T ss_pred C
Confidence 3
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=5.7e-11 Score=119.69 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=116.6
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++.|++..+. ...+|. .+++|++|+|++|.+. .+. .+++|++|++++|.++. +-...++|+.|++
T Consensus 61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence 588888886543 335565 4688999999998876 333 78899999999988732 1115678888888
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchH------
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE------ 289 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~------ 289 (395)
.+|... .+.. .+++|++|++++|. +..+....++|+.|.++++....++ ..+++|+.|++++|.++.-
T Consensus 129 ~~N~l~-~lp~-~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPV-LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCC-cCCC-CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 887532 1111 24678888888773 3333233445555555554422222 2234455555544443310
Q ss_pred ---------HHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeeee
Q 016087 290 ---------WLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 290 ---------~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
.+..+...+++|+.|+++++. ++.+...+++|+.|+|+++ .+..++..+++|+.|++++|.++
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC
Confidence 000122234566666666652 3334444567777777665 44455556777888888877664
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=3e-11 Score=117.14 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=145.3
Q ss_pred EecCCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087 145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL 221 (395)
Q Consensus 145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~ 221 (395)
.+.......+|..+. ++++.|+|+++.+. .+ ....+++|++|+|+++.+..-.. ..+.++++|++|++++|...
T Consensus 49 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 49 ICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp ECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCS
T ss_pred EeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCC
Confidence 334444566776553 68999999998876 22 33489999999999998832211 23677999999999998543
Q ss_pred ce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCC-cccc-cccccccccceeEecccccchHHHHHH
Q 016087 222 KN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQ 294 (395)
Q Consensus 222 ~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l 294 (395)
.- ..+..+++|+.|+++++. .+... ...+++|++|+++++.. ..+. ..+..+++|++|++++|.++.- ..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~ 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PN 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CC
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cc
Confidence 21 124567899999999885 22222 22679999999998542 2222 2467899999999999987632 23
Q ss_pred hccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCC--ch-hhhhhCCCcceeEEeeeeeecc
Q 016087 295 ISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLR--LV-EVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 295 ~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~--l~-~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
+..+++|+.|+|+++..-.. ....+++|+.|+|+++.- +. ....++++|+.|++++|.++..
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 57789999999999852221 233568999999986532 11 3346789999999999987543
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=2.3e-11 Score=110.30 Aligned_cols=203 Identities=15% Similarity=0.102 Sum_probs=132.1
Q ss_pred CCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087 148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 224 (395)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~ 224 (395)
......+|..+. ++|++|+++++.+. .+ ....+++|++|+++++.+..-. ...+..+++|++|++++|......
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccC
Confidence 333455665442 57899999888765 22 2337889999999988773211 123567889999999888543211
Q ss_pred --eeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCCCcc--cccccccccccceeEecccccchHHHHHHhcc
Q 016087 225 --ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIKDEWLCNQISK 297 (395)
Q Consensus 225 --~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 297 (395)
.+..+++|+.|++.++. .+.... ..+++|++|+++++.... ++..++.+++|++|++++|.++.-. ...+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhh
Confidence 24567889999998875 222222 267899999999887443 4556788899999999998866421 112233
Q ss_pred CCCcc----EEEeeCCCCCc--hhccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087 298 FPLLE----SLLIAGCDDLK--SINISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 298 ~~~L~----~L~L~~~~~l~--~~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~ 354 (395)
+++|+ .|+++++..-. .......+|+.|+++++. .++ .....+++|+.|++++|++.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 34444 78888765221 112233589999998654 222 33467899999999999875
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.25 E-value=3.2e-11 Score=117.34 Aligned_cols=205 Identities=16% Similarity=0.063 Sum_probs=145.3
Q ss_pred EecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087 145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL 221 (395)
Q Consensus 145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~ 221 (395)
.+.+.+...+|..+. ++|++|+|+++.+. .+.. ..+++|++|+|+++.+..-. ...+.++++|++|++++|...
T Consensus 60 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCC
Confidence 333444556665543 68999999998876 3333 38999999999999884321 123567999999999998643
Q ss_pred ce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCC-cccc-cccccccccceeEecccccchHHHHHH
Q 016087 222 KN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLP-FQCK-FNLASCKFLKYLRFALTHIKDEWLCNQ 294 (395)
Q Consensus 222 ~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l 294 (395)
.. ..+..+++|+.|+++++. .+..- ....++|++|+++++.. ..+. ..+..+++|++|++++|.++.- ..
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~ 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PN 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CC
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---cc
Confidence 11 124567899999999985 22221 22679999999998542 2222 2467889999999999987642 23
Q ss_pred hccCCCccEEEeeCCCCCch---hccCCCccCEEecccCCCch---hhhhhCCCcceeEEeeeeeec
Q 016087 295 ISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCLRLV---EVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 295 ~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~~l~---~l~~~~~~L~~L~~~~~~~~~ 355 (395)
+..+++|+.|+++++..-.. ....+++|+.|+|+++.--. ....++++|+.|++++|.++.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 67789999999999763322 23456899999998764211 334678999999999998753
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=8.3e-12 Score=113.07 Aligned_cols=169 Identities=13% Similarity=0.020 Sum_probs=72.1
Q ss_pred ccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcce
Q 016087 158 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNK 234 (395)
Q Consensus 158 l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~ 234 (395)
+..+++|++|++++|.+. .+....+++|++|++++|.+..- ....+..+++|++|++.+|...... .+.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------- 130 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFD------- 130 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTT-------
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhc-------
Confidence 444555566665555544 22122455555555555554210 0111334455555555554321100 012
Q ss_pred EEeccccccchhhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc
Q 016087 235 FEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK 313 (395)
Q Consensus 235 L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 313 (395)
.+++|++|+++++....++. .++.+++|+.|++++|.++.- ....+..+++|+.|+++++.--.
T Consensus 131 --------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 131 --------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp --------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCc
Confidence 33445555554443222111 134455555555555554421 12223445555555555543111
Q ss_pred h---hccCCCccCEEecccCCCchhhhhhCCCcceeEEeeeee
Q 016087 314 S---INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 314 ~---~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
. ....+++|+.|+++++. +.+.||+|+.|++.++.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHHHHT
T ss_pred cCHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHHHhC
Confidence 1 11234555555555432 123355555555544433
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=2.9e-11 Score=119.68 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=39.0
Q ss_pred cCCceeEEEEeCCCCcc-cccccccccccceeEecccccchH-HHHHHhccCCCccEEEeeCCC
Q 016087 249 IAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDE-WLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~ 310 (395)
.+++|++|+++++.... .+..++.+++|+.|++++|.++.- .+...+..+++|+.|+++++.
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 55677777777765322 334456677777777777776641 233445667777777777654
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.23 E-value=1.3e-11 Score=122.96 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc---CCC-ccCCCCCcEEEeeeeec-ChHHHHHHHcCCCCc
Q 016087 137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE---SPR-SVKLSSLTKLFLMRVDA-TDLVLQSLLIGCPLI 210 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~---~~~-~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~~p~L 210 (395)
+++++|++.... ...++.. +..+++|++|++++|.+. .+. ...+++|++|+++++.. +.- ....+..+++|
T Consensus 74 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L 150 (549)
T 2z81_A 74 GSLEHLDLSDNH--LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSL 150 (549)
T ss_dssp TTCCEEECTTSC--CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEE
T ss_pred ccCCEEECCCCc--cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-CHhhhhccccc
Confidence 467777764432 2333433 566777888888877664 122 23677888888887763 211 11124567788
Q ss_pred cEEeeecCCCCce--EeeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC
Q 016087 211 EYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL 262 (395)
Q Consensus 211 e~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~ 262 (395)
++|++.+|..... ..+..+++|++|++..+. .+.... -..++|++|+++++.
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 8888877753321 123456677788777664 222221 146788888887765
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.23 E-value=2.9e-11 Score=110.11 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=129.4
Q ss_pred CCCcEEEEEecCCCccccc-ccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeee-cChHHHHHHHcCCCCcc
Q 016087 137 CNVKELSLELLGNPRFNLP-EIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~-~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~-~~~~~l~~l~~~~p~Le 211 (395)
++++++++.... ...++ ..+..+++|++|+++++.+. .+.. ..+++|++|+++++. +..-. ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 477777775433 23344 34567889999999988765 2333 378999999999986 42211 12356789999
Q ss_pred EEeeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEEEeCCCCccccc-ccccccccceeEecccc
Q 016087 212 YLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH 285 (395)
Q Consensus 212 ~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 285 (395)
+|++.+|..... ..+..+++|+.|+++++. .+..- ...+++|++|+++++....++. .+..+++|++|+++++.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999998854321 124567899999999885 22221 2257899999999887444333 36778999999999988
Q ss_pred cchHHHHHHhccCCCccEEEeeCCCCCc---hhccCCCccCEEecccC
Q 016087 286 IKDEWLCNQISKFPLLESLLIAGCDDLK---SINISSRSLKLLEIYDC 330 (395)
Q Consensus 286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~---~~~~~~~~Lk~L~L~~~ 330 (395)
++... ...+..+++|+.|+++++.--. .....+++|+.|+++++
T Consensus 189 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 189 VAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 76432 3456778999999999874222 12345789999999854
No 62
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=2.9e-11 Score=126.00 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=122.8
Q ss_pred CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCC-ccE
Q 016087 137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~-Le~ 212 (395)
++++.|++..... ..+|. .+..+++|+.|+|++|.+. .|....+++|+.|+|++|.+. .+...+..++. |+.
T Consensus 548 ~~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 4788888765443 27777 7778888888888887765 443336778888888888774 22223556677 788
Q ss_pred EeeecCCCCceEe--eCC-------------------------------CCCcceEEecccc--ccchhhc-cCCceeEE
Q 016087 213 LSLQLCPGLKNLE--LSG-------------------------------LTKLNKFEVCDAE--ELQRLCI-IAQDVQEV 256 (395)
Q Consensus 213 L~l~~c~~~~~~~--i~~-------------------------------~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L 256 (395)
|++++|... .+. +.. .++|+.|++++|. .++.... .+++|+.|
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 877776432 110 001 1244455555443 1111111 34666666
Q ss_pred EEeCCCCcccccc--------cccccccceeEecccccchHHHHHHhc--cCCCccEEEeeCCCC--CchhccCCCccCE
Q 016087 257 SIQGPLPFQCKFN--------LASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDD--LKSINISSRSLKL 324 (395)
Q Consensus 257 ~l~~~~~~~~~~~--------~~~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~--l~~~~~~~~~Lk~ 324 (395)
+++++....++.. .+++++|+.|+|++|.++ .+...+. .+++|+.|+|+++.- +......+++|+.
T Consensus 703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA 780 (876)
T ss_dssp ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCE
T ss_pred ECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCE
Confidence 6666542222221 112347888888777766 2233333 678888888887642 2222235678888
Q ss_pred EecccCC---------CchhhhhhCCCcceeEEeeeee
Q 016087 325 LEIYDCL---------RLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 325 L~L~~~~---------~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
|+|+++. .++.....+++|+.|++++|.+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8886522 1223345688888888888876
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=1.9e-10 Score=115.78 Aligned_cols=196 Identities=21% Similarity=0.155 Sum_probs=126.0
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++.|+++... ...+|. ..++|++|+|++|.+. .+. .+++|++|++++|.++. +-...++|+.|++
T Consensus 81 ~~L~~L~Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC
T ss_pred CCCCEEEcCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEEC
Confidence 578888876533 234554 4677888888877665 222 56677777777776522 1123466777777
Q ss_pred ecCCCCc-------------------eEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccccccccccccc
Q 016087 216 QLCPGLK-------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFL 276 (395)
Q Consensus 216 ~~c~~~~-------------------~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 276 (395)
++|.... .+. ..+++|+.|++++|. +..+....++|+.|.++++....++ ..+++|
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L 223 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLP---ALPSGL 223 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence 6663221 001 123566666666653 3333334566777777666533222 234889
Q ss_pred ceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeee
Q 016087 277 KYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 277 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~ 354 (395)
+.|++++|.++. +...+++|+.|+++++. ++.+...+++|+.|+|+++. .++....++++|+.|++++|+++
T Consensus 224 ~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 224 KELIVSGNRLTS-----LPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CEEEccCCccCc-----CCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 999999998764 23677999999999974 55555577899999998763 33333567999999999999875
Q ss_pred c
Q 016087 355 F 355 (395)
Q Consensus 355 ~ 355 (395)
.
T Consensus 298 ~ 298 (622)
T 3g06_A 298 E 298 (622)
T ss_dssp H
T ss_pred C
Confidence 4
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=2.5e-10 Score=113.62 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=147.9
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
++++++++...... ...|..+..+++|++|++++|.+. .+.. ..+++|++|+++++.+.... ...+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence 47888888654321 222456778999999999998876 3333 38999999999999984322 2346789999999
Q ss_pred eeecCCCCc---eEeeCCCCCcceEEeccccccchh----hccCCceeEEEEeCCCCcc-cccccccccccceeEecccc
Q 016087 214 SLQLCPGLK---NLELSGLTKLNKFEVCDAEELQRL----CIIAQDVQEVSIQGPLPFQ-CKFNLASCKFLKYLRFALTH 285 (395)
Q Consensus 214 ~l~~c~~~~---~~~i~~~~~L~~L~i~~c~~l~~l----~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~ 285 (395)
++++|.... ...+..+++|+.|+++++..+..+ ...+++|+.|+++++.... .+..++.+++|++|++..+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999986432 123567889999999988633322 2367899999999877432 34557788999999999887
Q ss_pred cchHHHHHHhccCCCccEEEeeCCCCCc------hhccCCCccCEEecccCCC-------chhhhhhCCCcceeEEeeee
Q 016087 286 IKDEWLCNQISKFPLLESLLIAGCDDLK------SINISSRSLKLLEIYDCLR-------LVEVKIAASSLSIFKYSGDV 352 (395)
Q Consensus 286 ~~~~~~~~l~~~~~~L~~L~L~~~~~l~------~~~~~~~~Lk~L~L~~~~~-------l~~l~~~~~~L~~L~~~~~~ 352 (395)
+..- ...++..+++|+.|+++++.--. .+...+++|+.|++.++.- +......+++|+.+++.++.
T Consensus 184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 6432 23344668999999999875322 1223457888888875431 11223456777888777776
Q ss_pred ee
Q 016087 353 IS 354 (395)
Q Consensus 353 ~~ 354 (395)
+.
T Consensus 263 ~~ 264 (549)
T 2z81_A 263 LN 264 (549)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=114.06 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=76.0
Q ss_pred CCCCccEEeeecCCCCce--EeeCCCCCcceEEeccccccc-----hhh--ccCCceeEEEEeCCCCccccc----cccc
Q 016087 206 GCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAEELQ-----RLC--IIAQDVQEVSIQGPLPFQCKF----NLAS 272 (395)
Q Consensus 206 ~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~l~-----~l~--~~~p~L~~L~l~~~~~~~~~~----~~~~ 272 (395)
.+++|++|++++|..... ..+..+++|+.|+++++.-.. ... ...|+|++|+++++....+.. .++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 455555555555533211 122344556666665553111 001 245566666666655322111 1345
Q ss_pred ccccceeEecccccchHHHHHHhccC---CCccEEEeeCCCCCchhccC-CCccCEEecccCCCch-hhhhhCCCcceeE
Q 016087 273 CKFLKYLRFALTHIKDEWLCNQISKF---PLLESLLIAGCDDLKSINIS-SRSLKLLEIYDCLRLV-EVKIAASSLSIFK 347 (395)
Q Consensus 273 ~~~L~~L~L~~~~~~~~~~~~l~~~~---~~L~~L~L~~~~~l~~~~~~-~~~Lk~L~L~~~~~l~-~l~~~~~~L~~L~ 347 (395)
+++|++|+|++|.+++.... .+..+ ++|++|+++++. ++.+... .++|+.|+|+++.--. ..+..+++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 57777777777765542111 12222 577777777654 2222221 3677888877543111 2346678888888
Q ss_pred Eeeeeeec
Q 016087 348 YSGDVISF 355 (395)
Q Consensus 348 ~~~~~~~~ 355 (395)
+++|+++.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 88887653
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=114.26 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=142.1
Q ss_pred CCCcccccccccCCCCccEEEEcceecc--CC-CccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087 148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SP-RSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 224 (395)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~-~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~ 224 (395)
......+|..+. ++|++|+++++.+. .+ ....+++|++|+++++.+..-. ...+..+++|++|++++|....-.
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC
Confidence 344556676543 58999999998876 23 2348999999999999884311 123577899999999998643211
Q ss_pred --eeCCCCCcceEEecccc--ccch--hhccCCceeEEEEeCCC-Cccc-ccccccccccceeEecccccchHHHHHHhc
Q 016087 225 --ELSGLTKLNKFEVCDAE--ELQR--LCIIAQDVQEVSIQGPL-PFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQIS 296 (395)
Q Consensus 225 --~i~~~~~L~~L~i~~c~--~l~~--l~~~~p~L~~L~l~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 296 (395)
.+..+++|++|+++++. .+.. .....++|++|+++++. ...+ +..++.+++|++|+++++.+... ....+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHh
Confidence 25678899999999985 3333 22368999999999874 3222 34577889999999999987643 234567
Q ss_pred cCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCC----------------------------------chhhhh
Q 016087 297 KFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLR----------------------------------LVEVKI 338 (395)
Q Consensus 297 ~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~----------------------------------l~~l~~ 338 (395)
.+++|++|+++++.. ..+. ..+++|+.|+++++.- +++...
T Consensus 196 ~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 196 SIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp TCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred ccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 789999999999763 3222 2367888888875431 111234
Q ss_pred hCCCcceeEEeeeeee
Q 016087 339 AASSLSIFKYSGDVIS 354 (395)
Q Consensus 339 ~~~~L~~L~~~~~~~~ 354 (395)
.+++|+.|++++|.++
T Consensus 275 ~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 275 QISGLLELEFSRNQLK 290 (353)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred cccCCCEEECCCCCCC
Confidence 6889999999998775
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.21 E-value=9.9e-11 Score=115.86 Aligned_cols=236 Identities=13% Similarity=0.016 Sum_probs=140.2
Q ss_pred ccceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccc-----cCCCCccEEEEcceeccCCCcc
Q 016087 106 IRLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII-----LCSNSIEILTLAGLKLESPRSV 180 (395)
Q Consensus 106 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l-----~~~~~L~~L~L~~~~~~~~~~~ 180 (395)
..++.+.+.... .....+..+.......+++++++..+.. ...+|..+ ..+++|+.++++++.+..|...
T Consensus 220 ~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~ 294 (520)
T 2z7x_B 220 PKLSNLTLNNIE----TTWNSFIRILQLVWHTTVWYFSISNVKL-QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294 (520)
T ss_dssp TTCCEEEEEEEE----EEHHHHHHHHHHHHTSSCSEEEEEEEEE-ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHH
T ss_pred cchhhccccccc----cCHHHHHHHHHHhhhCcccEEEeecccc-cCccccchhhcccccCceeEeccccccceecchhh
Confidence 356666655321 1112333333333345788888765321 12455555 5677777777777666433111
Q ss_pred -----CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc--eEeeCCCCCcceEEecccc--ccchh---hc
Q 016087 181 -----KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK--NLELSGLTKLNKFEVCDAE--ELQRL---CI 248 (395)
Q Consensus 181 -----~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~--~l~~l---~~ 248 (395)
.-++|+.|+++++.+..... ...++.|++|++++|.... ...+..+++|+.|++++|. .+..+ ..
T Consensus 295 ~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 295 IYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371 (520)
T ss_dssp HHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred hhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence 12568888888877632111 1567888888888875432 1234567788888888775 22222 23
Q ss_pred cCCceeEEEEeCCCCcc-ccc-ccccccccceeEecccccchHHHHHHhccC-CCccEEEeeCCCC--CchhccCCCccC
Q 016087 249 IAQDVQEVSIQGPLPFQ-CKF-NLASCKFLKYLRFALTHIKDEWLCNQISKF-PLLESLLIAGCDD--LKSINISSRSLK 323 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~--l~~~~~~~~~Lk 323 (395)
..++|++|+++++.... ++. .+..+++|+.|++++|.+++.. ...+ ++|+.|+++++.- +......+++|+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQ 447 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccccchhhhcCCCCC
Confidence 67888888888876433 333 2566788888888888776432 2233 6888888888742 222122567888
Q ss_pred EEecccCCCchhh----hhhCCCcceeEEeeeeee
Q 016087 324 LLEIYDCLRLVEV----KIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 324 ~L~L~~~~~l~~l----~~~~~~L~~L~~~~~~~~ 354 (395)
+|+++++. +..+ ...+++|+.|++++|++.
T Consensus 448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 448 ELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence 88887653 2222 345788888888888764
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=1.6e-11 Score=114.38 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=70.4
Q ss_pred cccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc----eEeeCCCCC
Q 016087 157 IILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK----NLELSGLTK 231 (395)
Q Consensus 157 ~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~----~~~i~~~~~ 231 (395)
.+..+++|++|+++++.+. .+... +++|++|+++++.+..- ....+..+++|+.|++.+|.... ...+..+ +
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred HhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 3444555555555555443 22111 25555555555554210 01123445555555555553210 0011222 4
Q ss_pred cceEEeccccccchhhc-cCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 232 LNKFEVCDAEELQRLCI-IAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 232 L~~L~i~~c~~l~~l~~-~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
|+.|+++++. +..+.. ..++|++|+++++...... ..+..+++|++|+++++.+.... ...+..+++|+.|+++++
T Consensus 174 L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 174 LNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSS
T ss_pred cCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCC
Confidence 5555555443 111111 1245555555554422221 23444555555555555543211 112344555555555554
Q ss_pred CC--CchhccCCCccCEEeccc
Q 016087 310 DD--LKSINISSRSLKLLEIYD 329 (395)
Q Consensus 310 ~~--l~~~~~~~~~Lk~L~L~~ 329 (395)
.- +......+++|+.|++++
T Consensus 252 ~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 252 KLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCCBCCTTGGGCTTCCEEECCS
T ss_pred cCeecChhhhcCccCCEEECCC
Confidence 21 111122345555555553
No 69
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.20 E-value=1.2e-10 Score=106.48 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecc
Q 016087 161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD 239 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~ 239 (395)
+++|+.|++++|.+. .+....+++|++|+++++.+.+-. . +..+++|+.|++++|....-..+..+++|+.|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence 344555555555443 222224555555555555552211 1 445555555555555322111223334444444444
Q ss_pred cc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 240 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 240 c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
|. .+.. ...+++|+.|+++++....+ ..++.+++|++|++++|.+++-. . +..+++|+.|+++++
T Consensus 122 n~i~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 122 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred CcCCCChh-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC
Confidence 42 1111 11334444444444432222 12334455555555554443321 1 344444444444443
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.20 E-value=8.2e-11 Score=107.57 Aligned_cols=191 Identities=15% Similarity=0.030 Sum_probs=109.7
Q ss_pred cCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087 159 LCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i 237 (395)
..+++++.++++++.+. .|... .++|+.|+|+++.+..-. ...+..+++|+.|+++++..........+++|+.|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 34556666666665554 22222 356777777776662211 1124556777777777664332222245667777777
Q ss_pred cccc--ccchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch
Q 016087 238 CDAE--ELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS 314 (395)
Q Consensus 238 ~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 314 (395)
+++. .+.......++|++|+++++....++ ..+..+++|++|+|++|.++. .....+..+++|+.|+++++. ++.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~ 162 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN-LTE 162 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSC-CSC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCc-CCc
Confidence 7664 22222235677777777776643333 335667788888887777653 122345567778888887764 222
Q ss_pred h----ccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeee
Q 016087 315 I----NISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 315 ~----~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
+ ...+++|+.|+|+++. .++.-....++|+.|.+++|+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 2 2235778888876542 2222234456788888887775
No 71
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.16 E-value=4.1e-11 Score=121.68 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=117.3
Q ss_pred CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCC-cc
Q 016087 137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPL-IE 211 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~-Le 211 (395)
+++++|++..... ..+|. .+..+++|++|++++|.+. .+....+++|++|+++++.+. .+...+..++. |+
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence 6788888865443 26777 6777888888888877654 332225666677776666653 11122445555 66
Q ss_pred EEeeecCCCCce---------------------------EeeC-------CCCCcceEEecccc--ccchhhc-cCCcee
Q 016087 212 YLSLQLCPGLKN---------------------------LELS-------GLTKLNKFEVCDAE--ELQRLCI-IAQDVQ 254 (395)
Q Consensus 212 ~L~l~~c~~~~~---------------------------~~i~-------~~~~L~~L~i~~c~--~l~~l~~-~~p~L~ 254 (395)
.|++++|....- ..+. .+++|+.|+++++. .+..-.. .+++|+
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 666665532200 0011 22355555555553 1111111 256666
Q ss_pred EEEEeCCCCccccccc--------ccccccceeEecccccchHHHHHHhc--cCCCccEEEeeCCCCC--chhccCCCcc
Q 016087 255 EVSIQGPLPFQCKFNL--------ASCKFLKYLRFALTHIKDEWLCNQIS--KFPLLESLLIAGCDDL--KSINISSRSL 322 (395)
Q Consensus 255 ~L~l~~~~~~~~~~~~--------~~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~l--~~~~~~~~~L 322 (395)
+|+++++....++... ..+++|+.|+|++|.++ .+...+. .+++|+.|+++++.-- ......+++|
T Consensus 461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L 538 (636)
T 4eco_A 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538 (636)
T ss_dssp EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSC
T ss_pred EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCC
Confidence 6666665532222211 11237888888777766 2233333 7788888888876422 2222346788
Q ss_pred CEEecccCC---------CchhhhhhCCCcceeEEeeeee
Q 016087 323 KLLEIYDCL---------RLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 323 k~L~L~~~~---------~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
+.|+|+++. .++.-...+++|+.|++++|.+
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 888885422 2223345678888888888876
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=4.1e-11 Score=110.65 Aligned_cols=214 Identities=12% Similarity=0.104 Sum_probs=144.7
Q ss_pred cceEEEEEecCCCcCCCchhHHHHHHHHHhCCCcEEEEEecCCCcccccccc--cCCCCccEEEEcceeccCCC------
Q 016087 107 RLMNFSLFVPGDSLEICLPYIDQCIFYALGCNVKELSLELLGNPRFNLPEII--LCSNSIEILTLAGLKLESPR------ 178 (395)
Q Consensus 107 ~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~l~~~l--~~~~~L~~L~L~~~~~~~~~------ 178 (395)
.++.+.+.-. ......+..........+++++++..... ....|..+ ..+++|+.|+|+++.+....
T Consensus 65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 4666665532 22234455555555557899999976543 23344444 67889999999999876211
Q ss_pred -ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCc------eEeeCCCCCcceEEecccc--ccchh---
Q 016087 179 -SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLK------NLELSGLTKLNKFEVCDAE--ELQRL--- 246 (395)
Q Consensus 179 -~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~------~~~i~~~~~L~~L~i~~c~--~l~~l--- 246 (395)
...+++|++|+|++|.+.... ...+..+++|++|++++|.... ......+++|+.|++++|. .+...
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence 125899999999999983211 1235679999999999997432 1223567899999999985 22332
Q ss_pred -hccCCceeEEEEeCCCCccc-ccccccc---cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc-hhccCCC
Q 016087 247 -CIIAQDVQEVSIQGPLPFQC-KFNLASC---KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK-SINISSR 320 (395)
Q Consensus 247 -~~~~p~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~ 320 (395)
....++|++|+++++..... +..+..+ ++|++|++++|.++. +.. ..+++|+.|+++++.--. .....++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N~l~~~~~~~~l~ 294 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSNRLNRAPQPDELP 294 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSCCCCSCCCTTSCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCCcCCCCchhhhCC
Confidence 23669999999999874433 3334444 799999999998772 121 124899999999975322 2245679
Q ss_pred ccCEEecccC
Q 016087 321 SLKLLEIYDC 330 (395)
Q Consensus 321 ~Lk~L~L~~~ 330 (395)
+|+.|++++.
T Consensus 295 ~L~~L~L~~N 304 (310)
T 4glp_A 295 EVDNLTLDGN 304 (310)
T ss_dssp CCSCEECSST
T ss_pred CccEEECcCC
Confidence 9999999854
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=2.6e-11 Score=109.83 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=102.4
Q ss_pred hCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC-C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 136 GCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 136 ~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
.+++++|++..... ..++ .+..+++|++|++++|.+. .+ . ...+++|++|++++|.+..- ....+..+++|++
T Consensus 62 l~~L~~L~l~~n~l--~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 62 LPNVRYLALGGNKL--HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTY 137 (272)
T ss_dssp CTTCCEEECTTSCC--CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCC--CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCE
Confidence 37899998865332 2333 5678999999999999876 22 2 23799999999999998421 1123567899999
Q ss_pred EeeecCCCCceEe---eCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccch
Q 016087 213 LSLQLCPGLKNLE---LSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKD 288 (395)
Q Consensus 213 L~l~~c~~~~~~~---i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~ 288 (395)
|++++|... .+. +..+++|+.|++++| ....+. ..++.+++|++|++++|.++.
T Consensus 138 L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN---------------------QLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccC-ccCHHHhccCccCCEEECCCC---------------------CcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 999998432 111 223445555555544 322111 124556777777777776553
Q ss_pred HHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEeccc
Q 016087 289 EWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIYD 329 (395)
Q Consensus 289 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~ 329 (395)
. ....+..+++|+.|++++++ +...+++|+.|.++.
T Consensus 196 ~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 196 V-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEWI 231 (272)
T ss_dssp C-CTTTTTTCTTCCEEECCSSC----BCCCTTTTHHHHHHH
T ss_pred c-CHHHHhCCcCCCEEEccCCC----ccccCcHHHHHHHHH
Confidence 2 12345667777777777764 223456677776653
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.15 E-value=5.2e-10 Score=111.85 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=50.5
Q ss_pred cCCceeEEEEeCCCCccc---ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCC-CccCE
Q 016087 249 IAQDVQEVSIQGPLPFQC---KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISS-RSLKL 324 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~-~~Lk~ 324 (395)
..++|++|+++++....+ +..++.+++|++|++++|.+........+..+++|+.|+++++.--..+.... ++|+.
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~ 454 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence 344555555554442211 12234445555555555544321112223444555555555544222222233 46777
Q ss_pred EecccCCCchhh---hhhCCCcceeEEeeeeee
Q 016087 325 LEIYDCLRLVEV---KIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 325 L~L~~~~~l~~l---~~~~~~L~~L~~~~~~~~ 354 (395)
|+++++ .+..+ ...+++|+.|++++|.++
T Consensus 455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 455 LDLHNN-RIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp EECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred EECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence 777654 22222 235777888888877764
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.15 E-value=2e-11 Score=115.27 Aligned_cols=199 Identities=15% Similarity=0.044 Sum_probs=97.8
Q ss_pred ccCCC-CccEEEEcceeccCCC--cc-C-----CCCCcEEEeeeeecC---hHHHHHHHcCC-CCccEEeeecCCCCceE
Q 016087 158 ILCSN-SIEILTLAGLKLESPR--SV-K-----LSSLTKLFLMRVDAT---DLVLQSLLIGC-PLIEYLSLQLCPGLKNL 224 (395)
Q Consensus 158 l~~~~-~L~~L~L~~~~~~~~~--~~-~-----~~~Lk~L~L~~~~~~---~~~l~~l~~~~-p~Le~L~l~~c~~~~~~ 224 (395)
+..++ +|++|+|++|.+.... .. . +++|++|+|++|.++ ...+...+..+ ++|++|++++|......
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 33455 5666666666554111 11 1 266666666666662 22334444444 56666666666422100
Q ss_pred --e----eCC-CCCcceEEecccc----ccchhh---ccCC-ceeEEEEeCCCCccccc-----ccccc-cccceeEecc
Q 016087 225 --E----LSG-LTKLNKFEVCDAE----ELQRLC---IIAQ-DVQEVSIQGPLPFQCKF-----NLASC-KFLKYLRFAL 283 (395)
Q Consensus 225 --~----i~~-~~~L~~L~i~~c~----~l~~l~---~~~p-~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~L~~ 283 (395)
. +.. .++|++|++++|. ....+. ...+ +|++|+++++....... .+..+ ++|++|+|++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 0 112 2366677666664 111111 1233 67777777665221111 12233 4777777777
Q ss_pred cccchHH---HHHHhcc-CCCccEEEeeCCCCCc-------hhccCCCccCEEecccCC--C-----chhh---hhhCCC
Q 016087 284 THIKDEW---LCNQISK-FPLLESLLIAGCDDLK-------SINISSRSLKLLEIYDCL--R-----LVEV---KIAASS 342 (395)
Q Consensus 284 ~~~~~~~---~~~l~~~-~~~L~~L~L~~~~~l~-------~~~~~~~~Lk~L~L~~~~--~-----l~~l---~~~~~~ 342 (395)
|.+++.. +...+.. .++|++|+|+++.--. .....+++|+.|+++++. . +..+ ...+++
T Consensus 206 N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp SCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred CCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 7665532 2222333 3477777777764211 112234677777776543 1 1112 134555
Q ss_pred cceeEEeeeeeecc
Q 016087 343 LSIFKYSGDVISFQ 356 (395)
Q Consensus 343 L~~L~~~~~~~~~~ 356 (395)
|+.|+++++++...
T Consensus 286 L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 286 IILVDKNGKEIHPS 299 (362)
T ss_dssp EEEECTTSCBCCGG
T ss_pred eEEEecCCCcCCCc
Confidence 66666777765443
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.15 E-value=9.6e-11 Score=103.81 Aligned_cols=184 Identities=10% Similarity=0.082 Sum_probs=98.6
Q ss_pred CccEEEEcceecc--CCC-ccCCCCCcEEEeeeee-cChHHHHHHHcCCCCccEEeeecCCCCceEe---eCCCCCcceE
Q 016087 163 SIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVD-ATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKF 235 (395)
Q Consensus 163 ~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~~~~L~~L 235 (395)
+|+.|+++++.+. .+. ...+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 6777777776655 222 2267777777777775 42100 1124567777777777633333322 2345677777
Q ss_pred Eecccc--ccchhhccCCcee---EEEEeCC-CCccccc-ccccccccc-eeEecccccchHHHHHHhccCCCccEEEee
Q 016087 236 EVCDAE--ELQRLCIIAQDVQ---EVSIQGP-LPFQCKF-NLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESLLIA 307 (395)
Q Consensus 236 ~i~~c~--~l~~l~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 307 (395)
+++++. .++. ....++|+ +|+++++ ....++. .+..+++|+ +|+++++.++. .....+.. ++|++|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcC
Confidence 777664 2222 12344554 7777776 4322222 255667777 77777766542 11122223 667777777
Q ss_pred CCCCCchhc----cCC-CccCEEecccCCCchhhh-hhCCCcceeEEeee
Q 016087 308 GCDDLKSIN----ISS-RSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD 351 (395)
Q Consensus 308 ~~~~l~~~~----~~~-~~Lk~L~L~~~~~l~~l~-~~~~~L~~L~~~~~ 351 (395)
+++.++.+. ..+ ++|+.|+++++ .+..++ ...++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence 765443332 234 66777777653 223332 24666777766554
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=4.5e-10 Score=109.29 Aligned_cols=31 Identities=16% Similarity=-0.042 Sum_probs=14.1
Q ss_pred cccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
++|+.|++++|.+.. +....++|+.|+++++
T Consensus 257 ~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred cccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence 445555555544332 1122345555555554
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=2.2e-10 Score=114.56 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=39.3
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CC--Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCc--
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SP--RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLI-- 210 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~--~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~L-- 210 (395)
+++++|++.... ...+|.. .+++|++|++++|.+. .+ .. ..+++|++|+++++.+.... +..++.|
T Consensus 100 ~~L~~L~Ls~N~--l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L 171 (562)
T 3a79_B 100 QDLEYLDVSHNR--LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHL 171 (562)
T ss_dssp TTCCEEECTTSC--CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCE
T ss_pred CCCCEEECCCCc--CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhcee
Confidence 455555554322 2244444 5666677777666654 12 22 25667777777776663322 2233444
Q ss_pred cEEeeecCC
Q 016087 211 EYLSLQLCP 219 (395)
Q Consensus 211 e~L~l~~c~ 219 (395)
+.|++.+|.
T Consensus 172 ~~L~L~~n~ 180 (562)
T 3a79_B 172 SCILLDLVS 180 (562)
T ss_dssp EEEEEEESS
T ss_pred eEEEeeccc
Confidence 666666553
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=2e-10 Score=98.72 Aligned_cols=101 Identities=20% Similarity=0.161 Sum_probs=49.0
Q ss_pred cCCCCccEEeeecCCCCc--eEeeCCCCCcceEEeccccc---cchhhccCCceeEEEEeCCC-Ccccccccccccccce
Q 016087 205 IGCPLIEYLSLQLCPGLK--NLELSGLTKLNKFEVCDAEE---LQRLCIIAQDVQEVSIQGPL-PFQCKFNLASCKFLKY 278 (395)
Q Consensus 205 ~~~p~Le~L~l~~c~~~~--~~~i~~~~~L~~L~i~~c~~---l~~l~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~ 278 (395)
..+++|++|++++|.... ...+..+++|+.|++++|.- .......+++|+.|+++++. ...++ .+..+++|++
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCE
Confidence 334444444444443221 11223344555555555430 01111245566666666554 33333 3555666777
Q ss_pred eEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 279 LRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 279 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
|++++|.+++-. .+..+++|+.|+++++
T Consensus 164 L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 164 LNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred EECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 777666655421 3455666666666654
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=122.04 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=50.6
Q ss_pred cccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--Cc-hhhhhhCCCcceeE
Q 016087 274 KFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RL-VEVKIAASSLSIFK 347 (395)
Q Consensus 274 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l-~~l~~~~~~L~~L~ 347 (395)
++|+.|+++++.+... ....+..+++|+.|+++++..-.. ....+++|++|+|+++. .+ ......+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5677777777765432 133456678888888887642221 22345788888887653 22 13345688888888
Q ss_pred Eeeeeee
Q 016087 348 YSGDVIS 354 (395)
Q Consensus 348 ~~~~~~~ 354 (395)
+++|.+.
T Consensus 345 L~~N~i~ 351 (844)
T 3j0a_A 345 LQKNHIA 351 (844)
T ss_dssp CCSCCCC
T ss_pred CCCCCCC
Confidence 8888653
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.14 E-value=7.9e-11 Score=109.72 Aligned_cols=211 Identities=14% Similarity=0.028 Sum_probs=139.6
Q ss_pred CCCcEEEEEecCCCcccc-cccccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNL-PEIILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l-~~~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
++++.+++.... ...+ +..+..+++|++|++++|.+. .+... .+++|++|+++++.+.. +. ....++|++
T Consensus 54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~--~~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IP--PNLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CC--SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cC--ccccccCCE
Confidence 477777775433 2233 335667889999999988776 23333 78999999999988732 11 012378999
Q ss_pred EeeecCCCCce--EeeCCCCCcceEEeccccc----cchhhccCCceeEEEEeCCCCcccccccccccccceeEeccccc
Q 016087 213 LSLQLCPGLKN--LELSGLTKLNKFEVCDAEE----LQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 213 L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~~----l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 286 (395)
|++.+|..... ..+..+++|+.|+++++.- .....+...+|++|+++++....++..+ .++|++|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence 99998854321 1245678999999998751 1111222238888888887644333222 37899999998886
Q ss_pred chHHHHHHhccCCCccEEEeeCCCCCch---hccCCCccCEEecccCC--CchhhhhhCCCcceeEEeeeeeecc
Q 016087 287 KDEWLCNQISKFPLLESLLIAGCDDLKS---INISSRSLKLLEIYDCL--RLVEVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 287 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~---~~~~~~~Lk~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
+... ...+..+++|+.|+++++..-.. ....+++|+.|+++++. .++.-...+++|+.|++++|+++..
T Consensus 206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 6422 23457788999999988742221 23356899999998653 3333346789999999999987544
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.14 E-value=1.9e-10 Score=101.88 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=119.7
Q ss_pred CCcEEEEEecCCCcccccc-cccCCCCccEEEEccee-cc--CCCc-cCCCCCcEEEeee-eecChHHHHHHHcCCCCcc
Q 016087 138 NVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLK-LE--SPRS-VKLSSLTKLFLMR-VDATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~-~~--~~~~-~~~~~Lk~L~L~~-~~~~~~~l~~l~~~~p~Le 211 (395)
+++++++.... ...+|. .+..+++|++|+++++. +. .+.. ..+++|++|++++ +.+..-. ...+..+++|+
T Consensus 32 ~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCC
T ss_pred cccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCC
Confidence 67777776533 234444 45568888888888885 54 2223 3788888888887 6653211 12356788888
Q ss_pred EEeeecCCCCceEeeCCCCCcc---eEEeccccccchhh----ccCCcee-EEEEeCCCCcccccccccccccceeEecc
Q 016087 212 YLSLQLCPGLKNLELSGLTKLN---KFEVCDAEELQRLC----IIAQDVQ-EVSIQGPLPFQCKFNLASCKFLKYLRFAL 283 (395)
Q Consensus 212 ~L~l~~c~~~~~~~i~~~~~L~---~L~i~~c~~l~~l~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 283 (395)
.|++.+|....-..+..+++|+ .|+++++..+..+. ..+++|+ +|+++++....++......++|+.|++.+
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 8888887533212244556666 88888873222221 2578888 99988876433333222237899999988
Q ss_pred cc-cchHHHHHHhccC-CCccEEEeeCCCCCchhc-cCCCccCEEecccCCC
Q 016087 284 TH-IKDEWLCNQISKF-PLLESLLIAGCDDLKSIN-ISSRSLKLLEIYDCLR 332 (395)
Q Consensus 284 ~~-~~~~~~~~l~~~~-~~L~~L~L~~~~~l~~~~-~~~~~Lk~L~L~~~~~ 332 (395)
+. ++. .....+..+ ++|+.|+++++. ++.+. ..+++|+.|.+.+++.
T Consensus 189 n~~l~~-i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 189 NKYLTV-IDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCCE-ECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC--
T ss_pred CCCccc-CCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCccC
Confidence 84 552 223345677 899999998864 33333 2568899999887764
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.12 E-value=2.1e-10 Score=115.34 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=118.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+++.|++..+. ...++ .+..+++|+.|+|++|.+. .+....+++|+.|+|++|.+..- . .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEe
Confidence 678888775433 23344 4677899999999998876 33344889999999999988331 1 3677899999999
Q ss_pred ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 293 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (395)
++|.......+..+++|+.|.+++|. .+ .....+++|+.|+++++....... +..+++|+.|+|++|.+.+- .
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l---~ 191 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL---R 191 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---G
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC---h
Confidence 98865432335567899999999885 33 222367889999998887444333 77888999999998887652 3
Q ss_pred HhccCCCccEEEeeCCC
Q 016087 294 QISKFPLLESLLIAGCD 310 (395)
Q Consensus 294 l~~~~~~L~~L~L~~~~ 310 (395)
.+..+++|+.|+|+++.
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 46778899999988864
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.11 E-value=2.3e-10 Score=116.99 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=29.7
Q ss_pred CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
++|+.|+++++..... +..+..+++|+.|+++++.+........+.++++|+.|+++++.
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 3455555555442211 22344566666666666655432212334555666666665543
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=4.4e-10 Score=101.50 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=32.1
Q ss_pred CCccEEEEcceecc-CC-C-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 162 NSIEILTLAGLKLE-SP-R-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 162 ~~L~~L~L~~~~~~-~~-~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
++|++|+++++.+. .+ . ...+++|++|+|+++.+..- ....+..+++|++|++++|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence 46777777776655 22 1 22567777777777665211 01123456666666666653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=2.7e-10 Score=107.46 Aligned_cols=197 Identities=14% Similarity=0.034 Sum_probs=134.3
Q ss_pred ccccccCCCCccEEEEcceeccCCC------cc-CCC-CCcEEEeeeeecCh---HHHHHHHcCC-CCccEEeeecCCCC
Q 016087 154 LPEIILCSNSIEILTLAGLKLESPR------SV-KLS-SLTKLFLMRVDATD---LVLQSLLIGC-PLIEYLSLQLCPGL 221 (395)
Q Consensus 154 l~~~l~~~~~L~~L~L~~~~~~~~~------~~-~~~-~Lk~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~~~ 221 (395)
+|..+...++|++|+|++|.+.... .. .++ +|++|+|++|.+++ ..+...+..+ +.|++|++++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3444444566999999999876222 22 677 99999999999943 4455555555 99999999999643
Q ss_pred ceE------eeCCC-CCcceEEeccccccchh-----h--c-c-CCceeEEEEeCCCCcc-----ccccccccc-cccee
Q 016087 222 KNL------ELSGL-TKLNKFEVCDAEELQRL-----C--I-I-AQDVQEVSIQGPLPFQ-----CKFNLASCK-FLKYL 279 (395)
Q Consensus 222 ~~~------~i~~~-~~L~~L~i~~c~~l~~l-----~--~-~-~p~L~~L~l~~~~~~~-----~~~~~~~~~-~L~~L 279 (395)
... .+..+ ++|+.|++++|. +... . + . .++|++|+++++.... +...+...+ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 111 12333 699999999996 2221 1 1 2 4699999999987321 111233444 99999
Q ss_pred EecccccchH---HHHHHhccCC-CccEEEeeCCCCCch-----hcc----CCCccCEEecccCCCc-------hhhhhh
Q 016087 280 RFALTHIKDE---WLCNQISKFP-LLESLLIAGCDDLKS-----INI----SSRSLKLLEIYDCLRL-------VEVKIA 339 (395)
Q Consensus 280 ~L~~~~~~~~---~~~~l~~~~~-~L~~L~L~~~~~l~~-----~~~----~~~~Lk~L~L~~~~~l-------~~l~~~ 339 (395)
+|++|.+++. .+...+..++ +|+.|+|+++. +.. +.. ..++|++|+|+++.-- ..+...
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 9999987654 3445566674 99999999986 222 221 2369999999865311 123356
Q ss_pred CCCcceeEEeeee
Q 016087 340 ASSLSIFKYSGDV 352 (395)
Q Consensus 340 ~~~L~~L~~~~~~ 352 (395)
+++|+.|++++|.
T Consensus 252 l~~L~~L~L~~n~ 264 (362)
T 3goz_A 252 LKHLQTVYLDYDI 264 (362)
T ss_dssp TTTCSEEEEEHHH
T ss_pred CCCccEEEeccCC
Confidence 8999999999997
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.10 E-value=6e-10 Score=95.64 Aligned_cols=150 Identities=19% Similarity=0.093 Sum_probs=99.3
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 260 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~ 260 (395)
.+++|++|+++++.+.+- . -+..+++|++|++.+|.......+. .+++|++|++++
T Consensus 42 ~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~~~~~l~---------------------~l~~L~~L~l~~ 97 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHATNYNPIS---------------------GLSNLERLRIMG 97 (197)
T ss_dssp HHHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCSCCGGGT---------------------TCTTCCEEEEEC
T ss_pred hcCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCCcchhhh---------------------cCCCCCEEEeEC
Confidence 577888888888887421 1 2566788888888877321111122 355666666666
Q ss_pred CCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc--cCCCccCEEecccCCCch-hh
Q 016087 261 PLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN--ISSRSLKLLEIYDCLRLV-EV 336 (395)
Q Consensus 261 ~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~--~~~~~Lk~L~L~~~~~l~-~l 336 (395)
+.... ....++.+++|++|+++++.+++... ..+..+++|+.|++++|..+..+. ..+++|+.|+++++.--. ..
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~ 176 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTT
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHH
Confidence 55322 23346678999999999998876443 456788999999999987454443 356899999998664111 23
Q ss_pred hhhCCCcceeEEeeeeeec
Q 016087 337 KIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 337 ~~~~~~L~~L~~~~~~~~~ 355 (395)
...+++|+.|+++++++..
T Consensus 177 l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGCSSCCEEEECBC----
T ss_pred hccCCCCCEEEeeCcccCC
Confidence 4678999999999998643
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.09 E-value=4.1e-11 Score=110.77 Aligned_cols=201 Identities=14% Similarity=0.069 Sum_probs=132.9
Q ss_pred cccccccCCCCccEEEEcceecc---CCCcc--------CCCCCcEEEeeeeecChHHHHHH-HcCCCCccEEeeecCCC
Q 016087 153 NLPEIILCSNSIEILTLAGLKLE---SPRSV--------KLSSLTKLFLMRVDATDLVLQSL-LIGCPLIEYLSLQLCPG 220 (395)
Q Consensus 153 ~l~~~l~~~~~L~~L~L~~~~~~---~~~~~--------~~~~Lk~L~L~~~~~~~~~l~~l-~~~~p~Le~L~l~~c~~ 220 (395)
.+|..+... |+.|+|+++.+. .+... .+++|++|+|+++.++......+ +..+++|++|++++|..
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 445544433 788888877663 22222 58999999999999843222222 37789999999999854
Q ss_pred CceE-eeCC-----CCCcceEEecccc--ccc-hhhccCCceeEEEEeCCCCcc---cc--cccccccccceeEeccccc
Q 016087 221 LKNL-ELSG-----LTKLNKFEVCDAE--ELQ-RLCIIAQDVQEVSIQGPLPFQ---CK--FNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 221 ~~~~-~i~~-----~~~L~~L~i~~c~--~l~-~l~~~~p~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~L~~~~~ 286 (395)
.... .+.. .++|++|+++++. .+. ......++|++|+++++.... .. ..++.+++|++|++++|.+
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 3211 1112 2799999999885 222 122367899999999886221 11 1237789999999999987
Q ss_pred ch--HHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchhhhhhC-CCcceeEEeeeeeecc
Q 016087 287 KD--EWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEVKIAA-SSLSIFKYSGDVISFQ 356 (395)
Q Consensus 287 ~~--~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~l~~~~-~~L~~L~~~~~~~~~~ 356 (395)
+. .....++..+++|+.|+++++.--... ....++|++|+++++. +.+++... ++|+.|++++|.++..
T Consensus 214 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSC
T ss_pred cchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCC
Confidence 73 334456678899999999987533322 2235899999998653 23444322 6899999999987654
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.09 E-value=2e-10 Score=120.44 Aligned_cols=102 Identities=22% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
.+++.+++..... ....+..+..+++|+.|+|+++.+. .+.. ..+++|++|+|++|.++.-. ...+..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEE
T ss_pred CCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEE
Confidence 4566666643221 1112333445666666666666554 2222 25666666666666652110 1123456666666
Q ss_pred eeecCCCCc--eEeeCCCCCcceEEeccc
Q 016087 214 SLQLCPGLK--NLELSGLTKLNKFEVCDA 240 (395)
Q Consensus 214 ~l~~c~~~~--~~~i~~~~~L~~L~i~~c 240 (395)
++++|.... ...+..+++|+.|+++++
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 666653211 112234455666666555
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.09 E-value=2.1e-10 Score=117.36 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=51.8
Q ss_pred cCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHH-------HHHhccCCCccEEEeeCCCCCchh----c
Q 016087 249 IAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWL-------CNQISKFPLLESLLIAGCDDLKSI----N 316 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~-------~~l~~~~~~L~~L~L~~~~~l~~~----~ 316 (395)
.+++|+.|+++++....++ ..+..+++|+.|++++|.++.-.. ...+..+++|+.|+++++. ++.+ .
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc
Confidence 4456666666655432222 124556666666666665442110 0124555666666666653 2222 1
Q ss_pred cCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087 317 ISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 317 ~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~ 354 (395)
..+++|+.|+++++. .++ .....+++|+.|++++|.++
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 234566666665331 111 22244566666666666543
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.08 E-value=4.6e-10 Score=102.62 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=123.3
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+++.+++..+. ...++ .+..+++|+.|++++|.+. .+....+++|++|+++++.+.. +. -+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEEC
Confidence 478888875443 23344 3667899999999999876 3334489999999999999843 12 2778999999999
Q ss_pred ecCCCCceEeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 293 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (395)
++|....-..+..+++|+.|++++|. .+. ....+++|+.|+++++....... +..+++|+.|++++|.+++- .
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l---~ 194 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL---R 194 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC---G
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC---h
Confidence 99864432345567899999999985 332 22368999999999987544433 78899999999999988753 2
Q ss_pred HhccCCCccEEEeeCCC
Q 016087 294 QISKFPLLESLLIAGCD 310 (395)
Q Consensus 294 l~~~~~~L~~L~L~~~~ 310 (395)
.+..+++|+.|++++++
T Consensus 195 ~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 195 ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEECcCCc
Confidence 36889999999999864
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=7.8e-10 Score=99.84 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=132.4
Q ss_pred CccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe---eCCCCCcceEEec
Q 016087 163 SIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE---LSGLTKLNKFEVC 238 (395)
Q Consensus 163 ~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~~~~L~~L~i~ 238 (395)
+++.+++++..+. .|... .++|++|+|+++.+..-. ...+..+++|++|+++++... .+. +..+++|+.|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 4778888887765 33332 378999999999883211 123577999999999998543 221 2457899999999
Q ss_pred ccc--ccch-hhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCc-
Q 016087 239 DAE--ELQR-LCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLK- 313 (395)
Q Consensus 239 ~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~- 313 (395)
++. .+.. ....+++|++|+++++....+. ..++.+++|++|+++++.++.- ....+..+++|+.|+++++..-.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCCcCcEe
Confidence 885 2222 1236789999999998744333 3367899999999999987642 23346788999999999874221
Q ss_pred -h-hccCCCccCEEecccCC--Cch-hhhhhCCCcceeEEeeeeee
Q 016087 314 -S-INISSRSLKLLEIYDCL--RLV-EVKIAASSLSIFKYSGDVIS 354 (395)
Q Consensus 314 -~-~~~~~~~Lk~L~L~~~~--~l~-~l~~~~~~L~~L~~~~~~~~ 354 (395)
. ....+++|++|+|+++. .++ .....+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 1 12346899999998653 222 23456899999999999863
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.05 E-value=2.8e-10 Score=114.43 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=61.6
Q ss_pred CCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecc
Q 016087 161 SNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCD 239 (395)
Q Consensus 161 ~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~ 239 (395)
+++|+.|.+++|.+. .+....+++|+.|+|++|.+..-.. +..+++|+.|+|++|.......+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 344555555554443 2222245555555555555421110 444555555555555322111233444555555555
Q ss_pred cc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 240 AE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 240 c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
|. .+.. ...+++|+.|.++++....+ ..+..+++|+.|+|++|.+.+... +..+++|+.|+|++|
T Consensus 119 N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 119 NGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKN 185 (605)
T ss_dssp SCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred CCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCC
Confidence 43 1111 11345555555555442222 233445555555555554443211 444555555555554
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=2.1e-09 Score=104.50 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+++++++..... ..+| .+..+++|++|+++++.+. .+. ..++|++|+++++.+.. +. -+..+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEEC
Confidence 4677777754332 2355 3566777777777776554 221 23456666666665522 11 1344555555555
Q ss_pred ecCCCCc--------------------eEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccc
Q 016087 216 QLCPGLK--------------------NLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKF 275 (395)
Q Consensus 216 ~~c~~~~--------------------~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~ 275 (395)
++|.... -..+..+++|+.|+++++. +..+....++|++|+++++....++ ...++
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~---~~~~~ 278 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLP---ELPQS 278 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccC---cccCc
Confidence 5543210 0012334555555555542 2222222345555555554422111 11244
Q ss_pred cceeEecccccchH--H-------------HHHHhccC-CCccEEEeeCCCCCchhccCCCccCEEecccCCCchhhhhh
Q 016087 276 LKYLRFALTHIKDE--W-------------LCNQISKF-PLLESLLIAGCDDLKSINISSRSLKLLEIYDCLRLVEVKIA 339 (395)
Q Consensus 276 L~~L~L~~~~~~~~--~-------------~~~l~~~~-~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~~~~~l~~l~~~ 339 (395)
|+.|++++|.+++- . +.. +..+ ++|+.|+++++. +..+...+++|+.|+++++ .+..++..
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~l~~lp~~ 355 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPEL 355 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCC
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCc-cccccccCCcCCEEECCCC-ccccccch
Confidence 55555554443320 0 000 1122 366677666653 3334444577888888755 33344446
Q ss_pred CCCcceeEEeeeeeec
Q 016087 340 ASSLSIFKYSGDVISF 355 (395)
Q Consensus 340 ~~~L~~L~~~~~~~~~ 355 (395)
+++|++|++++|++..
T Consensus 356 l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCSS
T ss_pred hhhccEEECCCCCCCc
Confidence 7788888888887654
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.01 E-value=1.2e-09 Score=98.95 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=128.0
Q ss_pred CCCcEEEEEecCCCcccccc-cccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccE
Q 016087 137 CNVKELSLELLGNPRFNLPE-IILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~-~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~ 212 (395)
++++++++.... ...++. .+..+++|++|++++|.+. .+. ...+++|++|+++++.+..... ..+..+++|++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence 468888775432 333443 5667899999999998776 232 3378999999999998833211 23567899999
Q ss_pred EeeecCCCC--ceEeeCCCCCcceEEecccc--c--cchhhccCCceeEEEEeCCCCcccc-cccccccccc----eeEe
Q 016087 213 LSLQLCPGL--KNLELSGLTKLNKFEVCDAE--E--LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLK----YLRF 281 (395)
Q Consensus 213 L~l~~c~~~--~~~~i~~~~~L~~L~i~~c~--~--l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~L 281 (395)
|++.+|... ....+..+++|+.|+++++. . +.......++|++|+++++....+. ..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 999988543 22245677899999999885 2 2333346799999999998743322 2355566666 7888
Q ss_pred cccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccC
Q 016087 282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDC 330 (395)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~ 330 (395)
+++.+..-. .......+|+.|+++++. ++.+ ...+++|+.|++++.
T Consensus 185 s~n~l~~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 185 SLNPMNFIQ--PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSCCCEEC--TTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCcccccC--ccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 888766321 122334589999999875 3322 234689999999853
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=1.3e-09 Score=98.15 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=95.6
Q ss_pred ccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087 158 ILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 236 (395)
Q Consensus 158 l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~ 236 (395)
+..+++|+.|++++|.+. .+....+++|++|+|+++.+++-.. +..+++|+.|++++|....-..+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 345677777777777665 3333367788888888877732211 6677888888888775332111223 6788888
Q ss_pred ecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 237 VCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 237 i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
+++|. .+.. ...+++|+.|+++++....++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++++
T Consensus 113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence 88774 2222 225778888888887644443 466788888888888887654 456778888888888754
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.96 E-value=2.2e-09 Score=98.05 Aligned_cols=184 Identities=19% Similarity=0.110 Sum_probs=113.2
Q ss_pred CCcEEEEEecCCCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEe
Q 016087 138 NVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLS 214 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 214 (395)
+++++++. ......+|..+. ++++.|+|+++.+. .+. ...+++|++|+|+++.++.-.. ...+++|+.|+
T Consensus 11 ~l~~l~~~--~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCD--KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECT--TSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECC--CCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 44455443 233345555443 57888888887765 122 2367888888888887732111 15678888888
Q ss_pred eecCCCCce-EeeCCCCCcceEEecccc--ccch-hhccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchH
Q 016087 215 LQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDE 289 (395)
Q Consensus 215 l~~c~~~~~-~~i~~~~~L~~L~i~~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~ 289 (395)
++++....- ..+..+++|+.|.++++. .+.. .....++|++|+++++....++. .+..+++|+.|+|++|.++.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE- 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-
Confidence 888753311 123456788888888774 2221 12256788888888876433332 35677888999998887663
Q ss_pred HHHHHhccCCCccEEEeeCCC--CCchhccCCCccCEEeccc
Q 016087 290 WLCNQISKFPLLESLLIAGCD--DLKSINISSRSLKLLEIYD 329 (395)
Q Consensus 290 ~~~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~ 329 (395)
.....+..+++|+.|+++++. .+.......++|+.|.|.+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 223345678888999888864 2222222346788888873
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=1.8e-09 Score=96.29 Aligned_cols=89 Identities=21% Similarity=0.082 Sum_probs=47.6
Q ss_pred CCcccccccccCCCCccEEEEcceecc--CCC-ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087 149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPR-SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 224 (395)
Q Consensus 149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~-~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~- 224 (395)
.....+|..+. ++|+.|+|+++.+. .+. ...+++|++|+|+++.+..-. ...+..+++|+.|++++|......
T Consensus 24 ~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 24 KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccCh
Confidence 33445555443 56777887777665 222 226777777777777763211 122455677777777766432110
Q ss_pred -eeCCCCCcceEEeccc
Q 016087 225 -ELSGLTKLNKFEVCDA 240 (395)
Q Consensus 225 -~i~~~~~L~~L~i~~c 240 (395)
.+..+++|+.|+++++
T Consensus 101 ~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred hHhcccCCCCEEEcCCC
Confidence 1223445555555544
No 99
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.91 E-value=6.2e-10 Score=73.70 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=33.2
Q ss_pred ccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087 18 IDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW 55 (395)
Q Consensus 18 ~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw 55 (395)
...++.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45588999999999999999999999999999999753
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=1.2e-09 Score=98.29 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccc
Q 016087 162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA 240 (395)
Q Consensus 162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c 240 (395)
.+++.++++++.+. .+....+++|++|+++++.+..-. -+..+++|++|++++|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 34555555555544 222336889999999998873211 25678889999998885432222556677777777776
Q ss_pred c--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccC
Q 016087 241 E--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINIS 318 (395)
Q Consensus 241 ~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~ 318 (395)
. .+..+.. ++|+.|+++++....++ .+..+++|+.|++++|.+++- ..+..+++|+.|+++++.- .
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i-~----- 163 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEI-T----- 163 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCC-C-----
T ss_pred ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcC-c-----
Confidence 4 2222221 56666666665533222 245556666666666655432 1344455555555555421 1
Q ss_pred CCccCEEecccCCCchhhhhhCCCcceeEEeeeeeecc
Q 016087 319 SRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGDVISFQ 356 (395)
Q Consensus 319 ~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~~~~~~ 356 (395)
.+ .....+++|+.|+++++++...
T Consensus 164 -------------~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 -------------NT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -------------BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred -------------ch-HHhccCCCCCEEeCCCCcccCC
Confidence 11 2234466666666666665433
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.89 E-value=3.8e-09 Score=105.17 Aligned_cols=175 Identities=16% Similarity=0.052 Sum_probs=106.2
Q ss_pred HhCCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEE
Q 016087 135 LGCNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYL 213 (395)
Q Consensus 135 ~~~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L 213 (395)
...+++.|++.... ...+|..+ .++|++|+|++|.+. .| ..+++|++|+|++|.++. +.. +. .+|+.|
T Consensus 57 ~~~~L~~L~Ls~n~--L~~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L 125 (571)
T 3cvr_A 57 LINQFSELQLNRLN--LSSLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHL 125 (571)
T ss_dssp HHTTCSEEECCSSC--CSCCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred ccCCccEEEeCCCC--CCccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence 34588888886543 33467655 378999999998876 44 457899999999988743 222 22 288888
Q ss_pred eeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHH
Q 016087 214 SLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCN 293 (395)
Q Consensus 214 ~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 293 (395)
++++|.... +.. .+++|+.|+++++. +..+....++|+.|+++++....++. +. ++|+.|+|++|.++. +..
T Consensus 126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~ 197 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA 197 (571)
T ss_dssp ECCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC
T ss_pred ECCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh
Confidence 888875332 222 56688888888774 33333356778888887776433333 33 778888887776652 111
Q ss_pred HhccCCCc-------cEEEeeCCC--CCchhccCCCccCEEecccCC
Q 016087 294 QISKFPLL-------ESLLIAGCD--DLKSINISSRSLKLLEIYDCL 331 (395)
Q Consensus 294 l~~~~~~L-------~~L~L~~~~--~l~~~~~~~~~Lk~L~L~~~~ 331 (395)
+. .+| +.|+++++. .+......+++|+.|+|+++.
T Consensus 198 -~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 -VP--VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -HH--HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 11 144 777776653 122211235666666666543
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.89 E-value=1.2e-09 Score=91.05 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=68.9
Q ss_pred CCccEEEEcceecc---CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEe
Q 016087 162 NSIEILTLAGLKLE---SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEV 237 (395)
Q Consensus 162 ~~L~~L~L~~~~~~---~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i 237 (395)
++|+.|++++|.+. .+.. ..+++|+.|++++|.+..- ..+..+++|+.|++++|....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCch---------------
Confidence 45666666666543 2222 2455666666665555221 223344444444444442211
Q ss_pred ccccccchhhccCCceeEEEEeCCCCcccc--cccccccccceeEecccccchHHH--HHHhccCCCccEEEeeCCC
Q 016087 238 CDAEELQRLCIIAQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWL--CNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 238 ~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~ 310 (395)
.+......+++|++|+++++....++ ..+..+++|++|++++|.++.... ...+..+++|+.|++.+|.
T Consensus 86 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 86 ----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 12222224667777777766543332 345667788888887777554321 2356677888888777764
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.88 E-value=5.9e-09 Score=97.78 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=125.5
Q ss_pred CCCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc--C-CCc-cCCCCCcEE-EeeeeecChHHHHHHHcCCCCc
Q 016087 137 CNVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--S-PRS-VKLSSLTKL-FLMRVDATDLVLQSLLIGCPLI 210 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~--~-~~~-~~~~~Lk~L-~L~~~~~~~~~l~~l~~~~p~L 210 (395)
.++++|+|.... ...+|.. +.++++|++|+|++|.+. . +.. ..+++|+++ .+..+.+..- ....+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 578888886533 4466654 456889999999988753 2 222 267777664 4444554210 01235678899
Q ss_pred cEEeeecCCCCceEee--CCCCCcceEEeccccccchhhc-----cCCceeEEEEeCCCCcccccccccccccceeEecc
Q 016087 211 EYLSLQLCPGLKNLEL--SGLTKLNKFEVCDAEELQRLCI-----IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFAL 283 (395)
Q Consensus 211 e~L~l~~c~~~~~~~i--~~~~~L~~L~i~~c~~l~~l~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 283 (395)
+.|++.+|........ ....++..|.+.++..+..+.. ....++.|.++++....++.......+|+.|.+..
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 9999988754321111 1223666777766654333321 23467788888776444443334456788888865
Q ss_pred cccchHHHHHHhccCCCccEEEeeCCCCCchhcc-CCCccCEEecccCCCchhhh--hhCCCcceeEEee
Q 016087 284 THIKDEWLCNQISKFPLLESLLIAGCDDLKSINI-SSRSLKLLEIYDCLRLVEVK--IAASSLSIFKYSG 350 (395)
Q Consensus 284 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~Lk~L~L~~~~~l~~l~--~~~~~L~~L~~~~ 350 (395)
+..........+..+++|+.|+++++. ++.+.. .+.+|++|.+.++.++.+++ .++++|+.+++.+
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 332222223345677888888888764 444433 35677777777666666554 4577777777643
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.84 E-value=9.2e-09 Score=102.42 Aligned_cols=174 Identities=15% Similarity=0.064 Sum_probs=87.9
Q ss_pred CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccc
Q 016087 162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDA 240 (395)
Q Consensus 162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c 240 (395)
.+|+.|+|+++.+. .|... +++|++|+|++|.++. +. ..+++|+.|++++|.... +.. -..+|+.|+++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence 36666766666554 23222 3667777776666631 11 345666777776663321 111 1116666666666
Q ss_pred cccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCC
Q 016087 241 EELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSR 320 (395)
Q Consensus 241 ~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~ 320 (395)
. +..+...+++|+.|+++++....++. .+++|++|+|++|.++. +.. +. ++|+.|+|+++. ++.+..-.+
T Consensus 131 ~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~ 200 (571)
T 3cvr_A 131 Q-LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV 200 (571)
T ss_dssp C-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred c-CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence 4 22122245666777666665332222 35666677776666543 111 21 666777666653 222222112
Q ss_pred cc-------CEEecccCC--CchhhhhhCCCcceeEEeeeee
Q 016087 321 SL-------KLLEIYDCL--RLVEVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 321 ~L-------k~L~L~~~~--~l~~l~~~~~~L~~L~~~~~~~ 353 (395)
+| +.|+|+++. .++.-...+++|+.|++++|++
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 44 666666432 2222223466667777666665
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=9.8e-10 Score=89.72 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=27.4
Q ss_pred CCceeEEEEeCCCCcccc--cccccccccceeEecccccchHHH--HHHhccCCCccEEEee
Q 016087 250 AQDVQEVSIQGPLPFQCK--FNLASCKFLKYLRFALTHIKDEWL--CNQISKFPLLESLLIA 307 (395)
Q Consensus 250 ~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~ 307 (395)
+++|++|+++++.....+ ..++.+++|++|++++|.+++... ...+..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 455555555554432221 334455566666665555443211 1344555555555443
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.81 E-value=1.2e-08 Score=90.97 Aligned_cols=144 Identities=16% Similarity=0.178 Sum_probs=82.3
Q ss_pred CCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEec
Q 016087 162 NSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVC 238 (395)
Q Consensus 162 ~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~ 238 (395)
.+.+.++++++.+. .|... .++|++|+|+++.+..-. ...+..+++|++|++++|...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45778888887766 44333 378999999999883211 123567899999999888533211 13455677777777
Q ss_pred cccccchh----hccCCceeEEEEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 239 DAEELQRL----CIIAQDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 239 ~c~~l~~l----~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
++. +..+ ....++|++|+++++....++. .+..+++|++|+|+++.++.- ....+..+++|+.|+|+++
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCC
Confidence 664 1111 1245566666666654332222 234556666666666554421 1123444555666665554
No 107
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=1.2e-07 Score=89.09 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhhcCCcccceEEEEEecCCCcCCCc-hhHHHHHHHH-HhCCCcEEEEEecCCC--------ccccccc
Q 016087 88 REIFNYIKETLRIRHNEMIRLMNFSLFVPGDSLEICL-PYIDQCIFYA-LGCNVKELSLELLGNP--------RFNLPEI 157 (395)
Q Consensus 88 ~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~l~~~-~~~~l~~L~l~~~~~~--------~~~l~~~ 157 (395)
..+.+...+++..... ..++.+.+.... ...... ..++.+...+ ..++++.|.+...... ...+...
T Consensus 91 ~~~~~~~~~fl~~~~~--~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l 167 (362)
T 2ra8_A 91 EEGVNLMDKILKDKKL--PSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV 167 (362)
T ss_dssp HTTCCHHHHHHHCTTG--GGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred ccHHHHHHHHhcCCCc--hhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence 4455566666655543 468888777432 110111 2334443322 2379999988432111 1134455
Q ss_pred ccCCCCccEEEEccee-ccCCCccCCCCCcEEEeeeeecChHHHHHHHc-CCCCccEEeeecCCCC--ceEeeCCCCCcc
Q 016087 158 ILCSNSIEILTLAGLK-LESPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGL--KNLELSGLTKLN 233 (395)
Q Consensus 158 l~~~~~L~~L~L~~~~-~~~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~--~~~~i~~~~~L~ 233 (395)
+..+++|+.|.|.++. ...+. ...++|++|.|..+.++.+.+..+.. .+|+|+.|+|..+... ....+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~------ 240 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN------ 240 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG------
T ss_pred HhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH------
Confidence 5678999999999873 33333 45899999999999998888877763 6999999998642110 000000
Q ss_pred eEEeccccccchhh--ccCCceeEEEEeCCCCcc----cccccccccccceeEecccccchHHHHHHh---ccCCCccEE
Q 016087 234 KFEVCDAEELQRLC--IIAQDVQEVSIQGPLPFQ----CKFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESL 304 (395)
Q Consensus 234 ~L~i~~c~~l~~l~--~~~p~L~~L~l~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L 304 (395)
.+..+. ..+|+|+.|.+.++.... .....+.+++|++|+|+.|.+.+.....+. ..+++|+.|
T Consensus 241 --------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 241 --------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp --------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred --------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 000000 123455555554433110 011123456777777777666665444433 345677777
Q ss_pred EeeCCC
Q 016087 305 LIAGCD 310 (395)
Q Consensus 305 ~L~~~~ 310 (395)
+|++|.
T Consensus 313 ~L~~n~ 318 (362)
T 2ra8_A 313 NMKYNY 318 (362)
T ss_dssp ECCSBB
T ss_pred ECCCCc
Confidence 776654
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=9.2e-09 Score=88.87 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=34.1
Q ss_pred cccccccccCCCCccEEEEcceecc-CC-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
...+|..+ .++|++|+++++.+. .+ .. ..+++|++|+++++.+..- ....+..+++|++|++++|
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC
Confidence 34445433 346777777776655 22 21 2566777777766665211 0112344555666666555
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.70 E-value=2.2e-08 Score=86.47 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=75.8
Q ss_pred CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhh-ccCCceeEE
Q 016087 182 LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEV 256 (395)
Q Consensus 182 ~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L 256 (395)
.++|++|+++++.++.- ....+..+++|++|++.++...... .+..+++|+.|+++++. .+..-. ...++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 45677777777666311 1122455667777777666332111 12345667777776664 111111 245667777
Q ss_pred EEeCCCCccccc-ccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhccCCCccCEEecc
Q 016087 257 SIQGPLPFQCKF-NLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSINISSRSLKLLEIY 328 (395)
Q Consensus 257 ~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~Lk~L~L~ 328 (395)
+++++....+.. .+..+++|++|+++++.++.- ....+..+++|+.|++++++ +...+++|+.|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WDCTCPGIRYLSEW 173 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BCCCTTTTHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----eecCCCCHHHHHHH
Confidence 776665332222 245667777777777665431 12334566777777777764 22345566666654
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.69 E-value=2.1e-08 Score=83.44 Aligned_cols=103 Identities=21% Similarity=0.135 Sum_probs=72.2
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++++++..+......+|..+..+++|+.|++++|.+. ......+++|++|++++|.+... +...+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 578888887654433467877778999999999999876 32333799999999999999432 4455667999999999
Q ss_pred ecCCCCce---EeeCCCCCcceEEeccc
Q 016087 216 QLCPGLKN---LELSGLTKLNKFEVCDA 240 (395)
Q Consensus 216 ~~c~~~~~---~~i~~~~~L~~L~i~~c 240 (395)
++|..... ..+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 99853221 12334455555555554
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.62 E-value=8e-08 Score=96.88 Aligned_cols=174 Identities=19% Similarity=0.180 Sum_probs=82.9
Q ss_pred CCCCCcEEEeeeeecC-hHHHHHHHcCCCCccEEeeecCCCCc-eEeeCCCCCcceEEeccccccch----hhccCCcee
Q 016087 181 KLSSLTKLFLMRVDAT-DLVLQSLLIGCPLIEYLSLQLCPGLK-NLELSGLTKLNKFEVCDAEELQR----LCIIAQDVQ 254 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~-~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~~~~L~~L~i~~c~~l~~----l~~~~p~L~ 254 (395)
.+++|+.|+++.+.+. ..........++.|+.|++..+.... ......+++|+.+.+..+..... .....++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 4566666666666551 11111223345566666665553211 01122345666666665531111 112345555
Q ss_pred EEEEeCCCCcc-cccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEeccc
Q 016087 255 EVSIQGPLPFQ-CKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYD 329 (395)
Q Consensus 255 ~L~l~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~ 329 (395)
.++++.+.... .+..+..+++|+.|+++++..........+..+++|+.|+|+++. ++.+ ...+++|+.|+|++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC
Confidence 66555544211 122344456666666666543332223344556666666666653 2221 22346666666664
Q ss_pred CC--Cch-hhhhhCCCcceeEEeeeeeec
Q 016087 330 CL--RLV-EVKIAASSLSIFKYSGDVISF 355 (395)
Q Consensus 330 ~~--~l~-~l~~~~~~L~~L~~~~~~~~~ 355 (395)
+. .+. ....++++|+.|++++|.++.
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 42 222 223456666666666665533
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=1e-07 Score=83.63 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087 149 NPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 224 (395)
Q Consensus 149 ~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~- 224 (395)
.....+|..+ .++|++|+|+++.+. .+.. ..+++|++|+|+++.+..-. ...+..+++|+.|++++|......
T Consensus 29 ~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 29 KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh
Confidence 3345555544 267888888887765 2222 26778888888877762110 122455677777777776322100
Q ss_pred -eeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccE
Q 016087 225 -ELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLES 303 (395)
Q Consensus 225 -~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 303 (395)
.+..+++|+.|+++ ++....++..+..+++|++|+|++|.++.- ....+..+++|+.
T Consensus 106 ~~~~~l~~L~~L~Ls---------------------~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 106 AVFDRLVHLKELFMC---------------------CNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTH 163 (229)
T ss_dssp TTTTTCTTCCEEECC---------------------SSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred hHhCcchhhCeEecc---------------------CCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCE
Confidence 11233444444444 444323333344555555555555554321 1123444555666
Q ss_pred EEeeCC
Q 016087 304 LLIAGC 309 (395)
Q Consensus 304 L~L~~~ 309 (395)
|++.++
T Consensus 164 L~l~~N 169 (229)
T 3e6j_A 164 AYLFGN 169 (229)
T ss_dssp EECTTS
T ss_pred EEeeCC
Confidence 655554
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=1.1e-07 Score=89.38 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=94.4
Q ss_pred CCCCCcEEEeeeeec--------ChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEecccc----ccchhhc
Q 016087 181 KLSSLTKLFLMRVDA--------TDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAE----ELQRLCI 248 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~--------~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~----~l~~l~~ 248 (395)
.+++|+.|.+.++.. +..++..++..+|+|++|++.+|.+.....+. .++|++|.+..|. .+..+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 355666665544322 11246678889999999999988443222222 5799999998775 2223332
Q ss_pred -cCCceeEEEEeCCC---Ccc--c-----ccccccccccceeEecccccchHHHHHHh--ccCCCccEEEeeCCCCCch-
Q 016087 249 -IAQDVQEVSIQGPL---PFQ--C-----KFNLASCKFLKYLRFALTHIKDEWLCNQI--SKFPLLESLLIAGCDDLKS- 314 (395)
Q Consensus 249 -~~p~L~~L~l~~~~---~~~--~-----~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--~~~~~L~~L~L~~~~~l~~- 314 (395)
..|+|++|.++.+. ... + .+....+|+|++|+|.+|.+.+.....+. ..+|+|++|+|+.+. +..
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~ 294 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDE 294 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChH
Confidence 68999999986321 111 1 11123579999999999888765444333 357899999997654 433
Q ss_pred ----hc---cCCCccCEEecccCC
Q 016087 315 ----IN---ISSRSLKLLEIYDCL 331 (395)
Q Consensus 315 ----~~---~~~~~Lk~L~L~~~~ 331 (395)
+. ..+++|+.|+|++|.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhhcccCCcceEEECCCCc
Confidence 22 235788888887663
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.60 E-value=3.1e-08 Score=80.62 Aligned_cols=82 Identities=26% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
++++.+++..+......+|..+..+++|+.|++++|.+. ......+++|++|++++|.+... +...+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 456666665433322356666667888888888887765 32233678888888888887432 3445566788888888
Q ss_pred ecCC
Q 016087 216 QLCP 219 (395)
Q Consensus 216 ~~c~ 219 (395)
++|.
T Consensus 96 s~N~ 99 (149)
T 2je0_A 96 SGNK 99 (149)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 7774
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.57 E-value=7.3e-08 Score=80.86 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=61.3
Q ss_pred cCCCCccEEEEcceecc-CCCccC-CCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEE
Q 016087 159 LCSNSIEILTLAGLKLE-SPRSVK-LSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFE 236 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~-~~~~~~-~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~ 236 (395)
..+.+|+.|++++|.+. .+.... .++|+.|++++|.+..- ..+..+++|+.|++++|... .+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~----------- 80 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIG----------- 80 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EEC-----------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccC-----------
Confidence 44667777777777655 222222 33666666666665321 12344455555555554211 110
Q ss_pred eccccccchhhccCCceeEEEEeCCCCccccc--ccccccccceeEecccccchH--HHHHHhccCCCccEEEeeCC
Q 016087 237 VCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF--NLASCKFLKYLRFALTHIKDE--WLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 237 i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~L~~L~L~~~ 309 (395)
..+...+++|++|+++++....++. .+..+++|++|++++|.+... ....++..+|+|+.|++.++
T Consensus 81 -------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 81 -------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp -------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred -------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 0011234555555555554322222 344556666666666554321 11123455566666655554
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=6.7e-08 Score=81.10 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=82.4
Q ss_pred CCCcEEEEEecCCCcccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEee
Q 016087 137 CNVKELSLELLGNPRFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSL 215 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 215 (395)
.+++++++.... ...++......++|++|++++|.+. .+....+++|++|++++|.++.-. ..++..+++|+.|++
T Consensus 19 ~~L~~L~l~~n~--l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSC--CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCC--CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEEC
Confidence 467777775433 3345543333459999999998876 333447999999999999984211 123466899999999
Q ss_pred ecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccccc----ccccccccceeEecccccch
Q 016087 216 QLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQCKF----NLASCKFLKYLRFALTHIKD 288 (395)
Q Consensus 216 ~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~ 288 (395)
++|.... +. .+. ....+++|+.|+++++.....+. .+..+++|+.|+++.+...+
T Consensus 96 ~~N~i~~-~~----------------~~~-~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVE-LG----------------DLD-PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCC-GG----------------GGG-GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCc-ch----------------hhH-hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9885321 00 000 11145666666666655322222 25678889999988877554
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.54 E-value=1.1e-07 Score=82.82 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=32.2
Q ss_pred ccccccccCCCCccEEEEcceecc-C-CC--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 152 FNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 152 ~~l~~~l~~~~~L~~L~L~~~~~~-~-~~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
..+|..+ .+.++.|+|+++.+. . +. ...+++|++|+|+++.++.-. ...+..+++|++|++++|.
T Consensus 24 ~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 24 NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc
Confidence 3455433 234566666666554 1 21 125666666666666652110 1123445556666665553
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.54 E-value=1.6e-07 Score=88.39 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=90.5
Q ss_pred CcccccccccCCCCccEEEEcceecc--CCCcc--CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE-
Q 016087 150 PRFNLPEIILCSNSIEILTLAGLKLE--SPRSV--KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL- 224 (395)
Q Consensus 150 ~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~~--~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~- 224 (395)
....+|..+ .+.++.|+|+++.+. .+... .+++|++|+|+++.+..-. ...+..+++|+.|++++|... .+
T Consensus 29 ~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~-~~~ 104 (361)
T 2xot_A 29 QLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLH-TLD 104 (361)
T ss_dssp CCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCC-EEC
T ss_pred CcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCC-cCC
Confidence 344555543 245778888887665 22222 6788888888887773211 112456778888888877532 22
Q ss_pred --eeCCCCCcceEEecccc--ccch-hhccCCceeEEEEeCCCCccccccc----ccccccceeEecccccchHHHHHHh
Q 016087 225 --ELSGLTKLNKFEVCDAE--ELQR-LCIIAQDVQEVSIQGPLPFQCKFNL----ASCKFLKYLRFALTHIKDEWLCNQI 295 (395)
Q Consensus 225 --~i~~~~~L~~L~i~~c~--~l~~-l~~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~~l~ 295 (395)
.+..+++|+.|+++++. .+.. .....++|+.|+++++....++... ..+++|+.|+|++|.++.-. ...+
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~ 183 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDL 183 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHH
T ss_pred HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHh
Confidence 23456778888887774 1111 1225677888888777644333322 45778888888887765321 2234
Q ss_pred ccCCC--ccEEEeeCC
Q 016087 296 SKFPL--LESLLIAGC 309 (395)
Q Consensus 296 ~~~~~--L~~L~L~~~ 309 (395)
..++. |+.|+|.++
T Consensus 184 ~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHSCHHHHTTEECCSS
T ss_pred hhccHhhcceEEecCC
Confidence 44555 367777774
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.53 E-value=6.8e-07 Score=90.03 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=75.7
Q ss_pred CCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE
Q 016087 148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL 224 (395)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~ 224 (395)
+.+...+|..+. +++++|+|+++.+. .+.. ..+++|++|+|++|.+..-. ...+.++++|++|+|++|.. ..+
T Consensus 40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l-~~l 115 (635)
T 4g8a_A 40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSL 115 (635)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEE
T ss_pred CCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcC-CCC
Confidence 333445554432 35677777776655 2222 36777777777777662100 11245567777777777642 222
Q ss_pred ---eeCCCCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcc--cccccccccccceeEecccccc
Q 016087 225 ---ELSGLTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQ--CKFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 225 ---~i~~~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~ 287 (395)
.+..+++|++|+++++. .+....+ .+++|++|+++++.... .+..++.+++|++|+++++.++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 23456677777777664 2222212 45677777777665322 2334556677777777776644
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.52 E-value=3e-07 Score=80.09 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCCccEEEEcceecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 148 GNPRFNLPEIILCSNSIEILTLAGLKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 148 ~~~~~~l~~~l~~~~~L~~L~L~~~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
+.....+|..+. ++|+.|+++++.+. .+.. ..+++|+.|+|+++.+..-. ...+.++++|+.|++++|.
T Consensus 20 ~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC
T ss_pred CCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc
Confidence 333455565443 57888888877665 2222 36778888888877763210 1124556777777777764
No 121
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=4.2e-08 Score=92.71 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=27.4
Q ss_pred CCccEEEEcceeccCC----CccCCCCCcEEEeeeeecChHHHHHHH----cCCCCccEEeeecC
Q 016087 162 NSIEILTLAGLKLESP----RSVKLSSLTKLFLMRVDATDLVLQSLL----IGCPLIEYLSLQLC 218 (395)
Q Consensus 162 ~~L~~L~L~~~~~~~~----~~~~~~~Lk~L~L~~~~~~~~~l~~l~----~~~p~Le~L~l~~c 218 (395)
++|+.|+|++|.+... -...+++|++|+|++|.+++.....+. ..++.|++|++++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 4566666666554310 011344566666666655444333322 23455555555555
No 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=8.3e-08 Score=79.89 Aligned_cols=94 Identities=16% Similarity=0.125 Sum_probs=69.3
Q ss_pred ccccccccCCCCccEEEEcceeccC---CCccCCCCCcEEEeeeeec-ChHHHHHHHcC---CCCccEEeeecCCCCceE
Q 016087 152 FNLPEIILCSNSIEILTLAGLKLES---PRSVKLSSLTKLFLMRVDA-TDLVLQSLLIG---CPLIEYLSLQLCPGLKNL 224 (395)
Q Consensus 152 ~~l~~~l~~~~~L~~L~L~~~~~~~---~~~~~~~~Lk~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~l~~c~~~~~~ 224 (395)
..+|..-....+|++|++++|.+.. .....+++|++|+|++|.. ++.++..+... |+.|++|+|++|..++..
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3455543344579999999998652 2223799999999999974 99999988763 789999999999876332
Q ss_pred ---eeCCCCCcceEEeccccccch
Q 016087 225 ---ELSGLTKLNKFEVCDAEELQR 245 (395)
Q Consensus 225 ---~i~~~~~L~~L~i~~c~~l~~ 245 (395)
.+..+++|++|++++|+.+..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 334578888888888874443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=2.5e-07 Score=81.16 Aligned_cols=143 Identities=15% Similarity=0.030 Sum_probs=91.1
Q ss_pred ccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccc
Q 016087 164 IEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEE 242 (395)
Q Consensus 164 L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~ 242 (395)
.+.++.++..+. .|.. -.++|++|+|+++.+..-. ...+..+++|+.|++++|... .+..
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~---------------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPV---------------- 81 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCT----------------
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcCh----------------
Confidence 456666666554 3332 2488999999999873211 123456777888888777421 1100
Q ss_pred cchhhccCCceeEEEEeCCCCcccc-cccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----cc
Q 016087 243 LQRLCIIAQDVQEVSIQGPLPFQCK-FNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NI 317 (395)
Q Consensus 243 l~~l~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~ 317 (395)
......++|+.|+++++....++ ..+..+++|+.|+|+++.++ .+...+..+++|+.|+++++. +..+ ..
T Consensus 82 --~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 156 (229)
T 3e6j_A 82 --GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD 156 (229)
T ss_dssp --TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTT
T ss_pred --hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCc-CCccCHHHHh
Confidence 01124566667777666533322 23567899999999999877 233445789999999999974 3222 33
Q ss_pred CCCccCEEecccC
Q 016087 318 SSRSLKLLEIYDC 330 (395)
Q Consensus 318 ~~~~Lk~L~L~~~ 330 (395)
.+++|+.|++.+.
T Consensus 157 ~l~~L~~L~l~~N 169 (229)
T 3e6j_A 157 RLSSLTHAYLFGN 169 (229)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEEeeCC
Confidence 4689999999753
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.45 E-value=2.2e-08 Score=85.78 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=38.0
Q ss_pred cccccccccCCCCccEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecC
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLC 218 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 218 (395)
...+|..+..+++|++|++++|.+. .+....+++|+.|++++|.+.. +...+..+++|+.|++++|
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence 3444556666777777777777665 3322256777777777776631 1222333455666666555
No 125
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=87.50 Aligned_cols=83 Identities=19% Similarity=0.098 Sum_probs=50.9
Q ss_pred cCCceeEEEEeCCCCcc-----cccccccccccceeEecccccchHHHH---HHhccCCCccEEEeeCCCCCc----hhc
Q 016087 249 IAQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEWLC---NQISKFPLLESLLIAGCDDLK----SIN 316 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~l~----~~~ 316 (395)
..++|++|+++++.... +...+..+++|++|+|++|.+++.... ..+...++|++|+|++|.--. .+.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 35778888888876322 111235567788888888887765433 334566788888888774221 111
Q ss_pred ---cCCCccCEEecccCC
Q 016087 317 ---ISSRSLKLLEIYDCL 331 (395)
Q Consensus 317 ---~~~~~Lk~L~L~~~~ 331 (395)
...++|++|+|+++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 134677777777553
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.42 E-value=7.4e-07 Score=77.63 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=87.0
Q ss_pred cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc
Q 016087 165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE 241 (395)
Q Consensus 165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~ 241 (395)
+.++++++.+. +|.. -.+.+++|+|+++.+..-.....+..+++|+.|+++++...... .+..+++|+.|+++++.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46666666554 3322 24567788888877733211123466778888888777533111 24456778888888775
Q ss_pred --ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 242 --ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 242 --~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
.+..- ....++|++|+++++....+ +..+..+++|+.|+|++|.++.-. ...+..+++|+.|++++++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcC
Confidence 22221 22567888888877764332 334666788888888887765321 2345667788888887754
No 127
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=7.2e-07 Score=74.19 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCceeEEEEeCCCCccc-ccccccccccceeEecccc-cchHHHHHHhcc---CCCccEEEeeCCCCCchhc----cCCC
Q 016087 250 AQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTH-IKDEWLCNQISK---FPLLESLLIAGCDDLKSIN----ISSR 320 (395)
Q Consensus 250 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~---~~~L~~L~L~~~~~l~~~~----~~~~ 320 (395)
..+|++|+++++...+. ...+..+++|++|+|++|. ++|..+..+... +++|++|+|++|..++.-+ ..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34567777776652221 1124567788888887775 777776666542 4678888888887775532 2467
Q ss_pred ccCEEecccCCCch
Q 016087 321 SLKLLEIYDCLRLV 334 (395)
Q Consensus 321 ~Lk~L~L~~~~~l~ 334 (395)
+|++|+|++|..+.
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 78888887777655
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.39 E-value=3.4e-08 Score=84.66 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=61.1
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeC
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQG 260 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~ 260 (395)
.+++|++|+++++.+.. +. .+..+++|+.|++++|.. . .+......+++|++|++++
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l------~--------------~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI------K--------------KIENLDAVADTLEELWISY 102 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE------C--------------SCSSHHHHHHHCSEEEEEE
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc------c--------------cccchhhcCCcCCEEECcC
Confidence 56666777766666622 11 234455556665555421 0 1122222346777777777
Q ss_pred CCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 261 PLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
+....++ .+..+++|++|++++|.++.-.....+..+++|+.|++++++
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 6543333 456677888888887777653333456677777777777753
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.39 E-value=5.2e-07 Score=78.59 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=72.1
Q ss_pred cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEecccc
Q 016087 165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE 241 (395)
Q Consensus 165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~ 241 (395)
+.++++++.+. .|... .++|+.|+|+++.+..-. ...+..+++|+.|++++|..... ..+..+++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666666554 33332 378999999999873211 11346678888888888753311 123345666666666653
Q ss_pred --ccchhh-ccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeC
Q 016087 242 --ELQRLC-IIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAG 308 (395)
Q Consensus 242 --~l~~l~-~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 308 (395)
.+..-. ...++|+.|+++++....+ +..+..+++|++|+|++|.++.-. ...+..+++|+.|++++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCC
Confidence 111111 1345555555555542221 123444555555555555443211 11233444555555544
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.33 E-value=4.7e-07 Score=84.71 Aligned_cols=202 Identities=12% Similarity=0.149 Sum_probs=130.4
Q ss_pred EecCCCcccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCC
Q 016087 145 ELLGNPRFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGL 221 (395)
Q Consensus 145 ~~~~~~~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~ 221 (395)
.+.+.....+|..+ .+++++|+|+++.+. . +.. ..+++|++|+|++|.+...--...+.++++|.++.+.++..+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 33344456777655 368999999999887 3 333 379999999999998622111123567788887666655555
Q ss_pred ceE---eeCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC-Cccccc-cccc-ccccceeEecccccchHHHH
Q 016087 222 KNL---ELSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL-PFQCKF-NLAS-CKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 222 ~~~---~i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~-~~~~~~-~~~~-~~~L~~L~L~~~~~~~~~~~ 292 (395)
..+ .+..+++|+.|.+.++. .+.... ....++..+.+.++. ...++. .+.. ...++.|+++++.++. +.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~ 170 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IH 170 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--EC
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CC
Confidence 444 24567899999999885 222222 355678888887653 222221 2333 3468899999998763 12
Q ss_pred HHhccCCCccEEEeeCCCCCchhc----cCCCccCEEecccCCCchhhh-hhCCCcceeEEeee
Q 016087 293 NQISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDCLRLVEVK-IAASSLSIFKYSGD 351 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~~~l~~l~-~~~~~L~~L~~~~~ 351 (395)
.-....++|++|.+.++..++.+. ..+++|+.|+|+++ .+..++ ....+|++|.+.++
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccC
Confidence 222345679999998876666554 34589999999865 455554 34667777776555
No 131
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.22 E-value=4.3e-07 Score=81.67 Aligned_cols=36 Identities=36% Similarity=0.702 Sum_probs=33.7
Q ss_pred cccCCCCHHHHHHHhcCCCcccch-hhhhhhhhhhhh
Q 016087 19 DRISNLPEPILHHILSFLPFTQTV-QTRVLSRTWKRA 54 (395)
Q Consensus 19 d~is~LPdeil~~Ils~L~~~d~~-r~~~vsrrWr~l 54 (395)
..+..||+||+.+||+|||.++++ ++++|||+|+++
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 457889999999999999999999 999999999976
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.16 E-value=2.4e-06 Score=80.30 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=103.5
Q ss_pred cEEEEcceecc-CCCccCCCCCcEEEeeeeecChHHHHHHHc-CCCCccEEeeecCCCCceE---eeCCCCCcceEEecc
Q 016087 165 EILTLAGLKLE-SPRSVKLSSLTKLFLMRVDATDLVLQSLLI-GCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCD 239 (395)
Q Consensus 165 ~~L~L~~~~~~-~~~~~~~~~Lk~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~ 239 (395)
+.++++++.+. +|.. -.+.++.|+|+++.++.-... .+. .+++|+.|++++|... .+ .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 56777776665 3332 346799999999998432111 233 7899999999998543 22 245678999999998
Q ss_pred cc--ccchh-hccCCceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHh---ccCCCccEEEeeCCCCC
Q 016087 240 AE--ELQRL-CIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQI---SKFPLLESLLIAGCDDL 312 (395)
Q Consensus 240 c~--~l~~l-~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~l 312 (395)
+. .+..- ....++|+.|+++++....+ +..+..+++|++|+|++|.++.-. ..++ ..+++|+.|+|+++. +
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~-l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK-L 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC-C
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC-C
Confidence 85 22221 22578999999988874433 335677899999999988866411 1222 457889999998864 2
Q ss_pred chhc----cCCCc--cCEEeccc
Q 016087 313 KSIN----ISSRS--LKLLEIYD 329 (395)
Q Consensus 313 ~~~~----~~~~~--Lk~L~L~~ 329 (395)
..+. ..++. |+.|.|.+
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCS
T ss_pred CccCHHHhhhccHhhcceEEecC
Confidence 2221 12343 46777763
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=2.3e-06 Score=85.33 Aligned_cols=99 Identities=22% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhhccCCceeEEEE
Q 016087 183 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSI 258 (395)
Q Consensus 183 ~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l 258 (395)
..|+.|+|++|.++. +.. +..+++|+.|++++|... .+ .+..+++|+.|+++++. .++ -...+++|+.|++
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 357888888887733 222 566777888888777432 11 22334455555555443 222 1113445555555
Q ss_pred eCCCCccc--ccccccccccceeEeccccc
Q 016087 259 QGPLPFQC--KFNLASCKFLKYLRFALTHI 286 (395)
Q Consensus 259 ~~~~~~~~--~~~~~~~~~L~~L~L~~~~~ 286 (395)
+++..... +..++.+++|+.|+|++|.+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 55443222 33344455555555555543
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.02 E-value=5.9e-07 Score=92.33 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=59.3
Q ss_pred CCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--eeCCCCCcceEEecccc--ccchhhccCCceeEE
Q 016087 181 KLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--ELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEV 256 (395)
Q Consensus 181 ~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L 256 (395)
.+++|+.|+|+++.+.. +..-+..++.|++|+|++|... .+ .+..+++|+.|+++++. .++.....+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 45555555555555421 1111224555666666555322 11 12344556666666553 222212356778888
Q ss_pred EEeCCCCcccccccccccccceeEecccccchH
Q 016087 257 SIQGPLPFQCKFNLASCKFLKYLRFALTHIKDE 289 (395)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 289 (395)
+++++....++..++.+++|+.|+|++|.++..
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 888776555555677888899999988887653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.02 E-value=8.6e-06 Score=81.14 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=119.9
Q ss_pred cCCCCccEEEEcceecc-CCCc-cCCCCCcEEEeeeeec------------ChHHHHHHHcCCCCccEEe-eecCCC--C
Q 016087 159 LCSNSIEILTLAGLKLE-SPRS-VKLSSLTKLFLMRVDA------------TDLVLQSLLIGCPLIEYLS-LQLCPG--L 221 (395)
Q Consensus 159 ~~~~~L~~L~L~~~~~~-~~~~-~~~~~Lk~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-l~~c~~--~ 221 (395)
..+++|+.|+|+++.+. .|.. ..+++|+.|+++++.. ........+..+++|+.|+ +..+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34677778888777665 3322 2677777777755531 0112334456677788877 333210 0
Q ss_pred ceE-----eeC--CCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHH
Q 016087 222 KNL-----ELS--GLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLC 292 (395)
Q Consensus 222 ~~~-----~i~--~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 292 (395)
... .+. ....|+.|+++++. .++. ...+++|+.|+++++....++..++.+++|+.|+|++|.++. +.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 111 11368889998885 4444 236789999999998866666678899999999999998875 23
Q ss_pred HHhccCCCccEEEeeCCCC--C--chhccCCCccCEEecccCC--Cch----hhhhhCCCcceeE
Q 016087 293 NQISKFPLLESLLIAGCDD--L--KSINISSRSLKLLEIYDCL--RLV----EVKIAASSLSIFK 347 (395)
Q Consensus 293 ~l~~~~~~L~~L~L~~~~~--l--~~~~~~~~~Lk~L~L~~~~--~l~----~l~~~~~~L~~L~ 347 (395)
.+..+++|+.|+|+++.- + ......+++|+.|+|+++. +++ .+...+|+|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 578899999999998742 2 2223457899999998653 111 2335589999885
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=5.6e-06 Score=70.31 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=54.8
Q ss_pred cccccccccCCCCccEEEEcceecc-C-CC--ccCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEee
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-S-PR--SVKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLEL 226 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~--~~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i 226 (395)
...+|..+. .+|+.|+++++.+. . +. ...+++|++|+|+++.++.-. ...+..+++|++|+++++.... +..
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-~~~ 95 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKE-ISN 95 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCE-ECS
T ss_pred cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCc-cCH
Confidence 344554432 26667777666554 1 11 225666666666666652210 1123445555566555553211 100
Q ss_pred CCCCCcceEEeccccccchhhccCCceeEEEEeCCCCccc-ccccccccccceeEecccccc
Q 016087 227 SGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIK 287 (395)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~ 287 (395)
......++|++|+++++..... +..+..+++|++|++++|.+.
T Consensus 96 ------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 96 ------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 0001334555555555442221 233455667777777666544
No 137
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.00 E-value=9.4e-07 Score=78.62 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.6
Q ss_pred cCCCCHHHHHHHhcCCCcccchhhhhhhhhhhh
Q 016087 21 ISNLPEPILHHILSFLPFTQTVQTRVLSRTWKR 53 (395)
Q Consensus 21 is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~ 53 (395)
|+.||+||+.+||+||+++|++++++|||+||.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999995
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.97 E-value=1.4e-05 Score=67.91 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=41.7
Q ss_pred CCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCce--EeeCCCCCcceEEecccc--ccchh-hccCCceeEEE
Q 016087 183 SSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKN--LELSGLTKLNKFEVCDAE--ELQRL-CIIAQDVQEVS 257 (395)
Q Consensus 183 ~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c~--~l~~l-~~~~p~L~~L~ 257 (395)
++|++|+|+++.++. +...+..+++|+.|+++++..... ..+..+++|+.|+++++. .+..- ....++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 455555555555421 112244455555555555532210 012233444444444442 11110 11334555555
Q ss_pred EeCCCCccccc-ccccccccceeEecccc
Q 016087 258 IQGPLPFQCKF-NLASCKFLKYLRFALTH 285 (395)
Q Consensus 258 l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 285 (395)
++++....++. .+..+++|+.|++.+|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 55544222222 23445555555555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.97 E-value=1.5e-05 Score=66.56 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=18.1
Q ss_pred CCceeEEEEeCCCCcccccc-cccccccceeEecccccc
Q 016087 250 AQDVQEVSIQGPLPFQCKFN-LASCKFLKYLRFALTHIK 287 (395)
Q Consensus 250 ~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~ 287 (395)
.++|++|+++++....++.. +..+++|++|++++|.+.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 34555555554442222221 344556666666655543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.93 E-value=4.8e-06 Score=85.58 Aligned_cols=108 Identities=16% Similarity=0.073 Sum_probs=77.2
Q ss_pred HHHHcCCCCccEEeeecCCCCce-EeeCCCCCcceEEecccc--ccchhhccCCceeEEEEeCCCCcccccccccccccc
Q 016087 201 QSLLIGCPLIEYLSLQLCPGLKN-LELSGLTKLNKFEVCDAE--ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLK 277 (395)
Q Consensus 201 ~~l~~~~p~Le~L~l~~c~~~~~-~~i~~~~~L~~L~i~~c~--~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~ 277 (395)
...+..++.|+.|+|++|....- ..+..+++|+.|+++++. .++.....+++|+.|+++++....++..++.+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 34467789999999999864311 123357899999999885 233223467899999999988656666788899999
Q ss_pred eeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 278 YLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 278 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
+|+|++|.++ .+...+..+++|+.|+|+++.
T Consensus 297 ~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCC--CCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCC--ccChhhhcCCCccEEeCCCCc
Confidence 9999998875 223346788999999999875
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=2.2e-05 Score=72.58 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=52.3
Q ss_pred CCceeEEEEeCCCCc-ccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchhc----cCCCccC-
Q 016087 250 AQDVQEVSIQGPLPF-QCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSLK- 323 (395)
Q Consensus 250 ~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk- 323 (395)
..++..+.+.+.... ........|++|+.|+|..+.++. .....+.+|++|+++++.+. ++.+. ..|++|+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence 445555555554311 111111236777777777654332 11234566777777777653 43332 2456677
Q ss_pred EEeccc-CCCch-hhhhhCCCcceeEEeeeee
Q 016087 324 LLEIYD-CLRLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 324 ~L~L~~-~~~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
.+.+.+ ...+. ....+|++|+.+++.++.+
T Consensus 278 ~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 278 TLELPASVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEEECTTCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred EEEEcccceEEchhhhhCCccCCEEEeCCCcc
Confidence 777754 11222 3335677777777766554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.86 E-value=4e-05 Score=65.01 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=58.0
Q ss_pred CceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEe
Q 016087 251 QDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLE 326 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~ 326 (395)
++|++|+++++....++..+..+++|+.|+|+++.++.- ....+..+++|+.|+|+++. +..+ ...+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence 466666666665444444556667777777777665531 12335566777777777654 2211 22346777777
Q ss_pred cccCC--Cch-hhhhhCCCcceeEEeeeee
Q 016087 327 IYDCL--RLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 327 L~~~~--~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
|+++. .+. .....+++|+.|++++|++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 76432 122 2234577788888777765
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.86 E-value=3e-05 Score=65.74 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCcEEEEEecCCCcccccc--cccCCCCccEEEEcceecc--CCCcc-CCCCCcEEEeeeeecChHHHHHHHcCCCCcc
Q 016087 137 CNVKELSLELLGNPRFNLPE--IILCSNSIEILTLAGLKLE--SPRSV-KLSSLTKLFLMRVDATDLVLQSLLIGCPLIE 211 (395)
Q Consensus 137 ~~l~~L~l~~~~~~~~~l~~--~l~~~~~L~~L~L~~~~~~--~~~~~-~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le 211 (395)
.++++|++.... ...++. .+..+++|++|+|+++.+. .+... .+++|++|+|+++.+..-. ...+...++|+
T Consensus 29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCC
T ss_pred CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCC
Confidence 378888876533 334443 3667999999999999876 23333 7999999999999983311 11245678888
Q ss_pred EEeeecCCCCce--EeeCCCCCcceEEeccc
Q 016087 212 YLSLQLCPGLKN--LELSGLTKLNKFEVCDA 240 (395)
Q Consensus 212 ~L~l~~c~~~~~--~~i~~~~~L~~L~i~~c 240 (395)
.|++++|..... ..+..+++|+.|++.++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 888888753311 01223445555555544
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.85 E-value=7.1e-05 Score=71.19 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=108.0
Q ss_pred CCccEEEEcceecc--CCCccCCCCCcEEEeeeeec---ChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcc
Q 016087 162 NSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA---TDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLN 233 (395)
Q Consensus 162 ~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~ 233 (395)
.+|+.+.+...-.. ......|++|+.++|..+.+ ....+ .|..|+.+.+... +..+ ....+++|+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence 35777776652111 12223677888888876554 22222 1577888877643 2222 234567888
Q ss_pred eEEecccc-ccchhhccCCceeEEEEeCCCCcccccccccccccceeEecccccch----HHHHHHhccCCCccEEEeeC
Q 016087 234 KFEVCDAE-ELQRLCIIAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKD----EWLCNQISKFPLLESLLIAG 308 (395)
Q Consensus 234 ~L~i~~c~-~l~~l~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~~L~~L~L~~ 308 (395)
.+.+...- .+..-.....+|+.+.+......--.-.+..|++|+.+.+.++.... ..-...+.+|++|+.+.|.+
T Consensus 230 ~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 230 TIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred EEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 88886532 33333344468888888554321112346778999999987764320 01123567889999998874
Q ss_pred CCCCchhc----cCCCccCEEecccC-CCch-hhhhhCCCcceeEEeeeee
Q 016087 309 CDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSGDVI 353 (395)
Q Consensus 309 ~~~l~~~~----~~~~~Lk~L~L~~~-~~l~-~l~~~~~~L~~L~~~~~~~ 353 (395)
.++.+. ..|.+|+.+.|.+. ..+. ....+| +|+++.+.++..
T Consensus 310 --~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 310 --SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp --TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred --ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 244333 34688999998542 2222 334668 899999988754
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.80 E-value=4.1e-05 Score=63.81 Aligned_cols=109 Identities=20% Similarity=0.136 Sum_probs=67.5
Q ss_pred cccccccccCCCCccEEEEcceecc-CC-Cc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceE--e
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-SP-RS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL--E 225 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~~-~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 225 (395)
...+|..+ .++|+.|+++++.+. .+ .. ..+++|++|+++++.+..- ....+..+++|+.|++++|...... .
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHH
Confidence 34445433 257888888887765 22 22 3678888888888877321 1123456788888888887533211 1
Q ss_pred eCCCCCcceEEecccc--ccchhh-ccCCceeEEEEeCCC
Q 016087 226 LSGLTKLNKFEVCDAE--ELQRLC-IIAQDVQEVSIQGPL 262 (395)
Q Consensus 226 i~~~~~L~~L~i~~c~--~l~~l~-~~~p~L~~L~l~~~~ 262 (395)
+..+++|+.|+++++. .+..-. ...++|++|+++++.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 3456788888888774 222211 246889999998875
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=6.4e-05 Score=69.40 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCcceEEecccc--ccchhhc-cCCceeEEEEeCCCCcccccccccccccc-eeEecccccchHHHHHHhccCCCccEE
Q 016087 229 LTKLNKFEVCDAE--ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLK-YLRFALTHIKDEWLCNQISKFPLLESL 304 (395)
Q Consensus 229 ~~~L~~L~i~~c~--~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~L~~L 304 (395)
+++|+.+++.++. .+..-.+ .+++|+++.+..+...--.-.+..|.+|+ .+.+... ++. .-...+.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~-l~~-I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPAS-VTA-IEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTT-CCE-ECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEccc-ceE-EchhhhhCCccCCEE
Confidence 6799999999763 3333333 67899999998763211123477899999 9999763 221 113457889999999
Q ss_pred EeeCCC--CCch-hccCCCccCEEe
Q 016087 305 LIAGCD--DLKS-INISSRSLKLLE 326 (395)
Q Consensus 305 ~L~~~~--~l~~-~~~~~~~Lk~L~ 326 (395)
++.+.. .+.. ....|++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 986532 2222 233567888775
No 147
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.73 E-value=6.9e-06 Score=79.21 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=37.2
Q ss_pred ccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhhc
Q 016087 14 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRAW 55 (395)
Q Consensus 14 ~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~lw 55 (395)
+.-..|.++.||+||+.+||+||+.++++++++|||+|+++.
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999999999999999999999998753
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=0.00014 Score=61.25 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=30.0
Q ss_pred CCceeEEEEeCCCCcc-----cccccccccccceeEe--cccccchHH---HHHHhccCCCccEEEeeCC
Q 016087 250 AQDVQEVSIQGPLPFQ-----CKFNLASCKFLKYLRF--ALTHIKDEW---LCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 250 ~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~L--~~~~~~~~~---~~~l~~~~~~L~~L~L~~~ 309 (395)
.++|++|+++++...+ +.-.+...++|++|+| .++.+.+.. +...+...+.|++|+|+++
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3455555555544211 1112344456666666 556666544 3333444566666666554
No 149
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.52 E-value=3.6e-05 Score=73.85 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.0
Q ss_pred ccccccccCCCCHHHHHHHhcCCCcccchhhhhhhhhhhhh
Q 016087 14 SLSHIDRISNLPEPILHHILSFLPFTQTVQTRVLSRTWKRA 54 (395)
Q Consensus 14 ~~~~~d~is~LPdeil~~Ils~L~~~d~~r~~~vsrrWr~l 54 (395)
.....|.++.||+|++.+||+||+.+|++++++|||+|+++
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 33457999999999999999999999999999999999863
No 150
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.51 E-value=1.9e-05 Score=75.63 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=35.5
Q ss_pred ccccccCCCCHH----HHHHHhcCCCcccchhhhhhhhhhhh
Q 016087 16 SHIDRISNLPEP----ILHHILSFLPFTQTVQTRVLSRTWKR 53 (395)
Q Consensus 16 ~~~d~is~LPde----il~~Ils~L~~~d~~r~~~vsrrWr~ 53 (395)
...|.++.||+| |+.+||+||+.++++++++|||+|++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 457889999999 99999999999999999999999995
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.40 E-value=0.00019 Score=59.39 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=37.9
Q ss_pred cccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
...+|..+ .++|+.|+|+++.+. . +.. ..+++|++|+|++|.+..- ....+..+++|+.|+++++.
T Consensus 21 l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc
Confidence 44555544 266777777777665 2 222 2677777777777776311 01123556667777776663
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.37 E-value=0.00023 Score=59.22 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=38.3
Q ss_pred cccccccccCCCCccEEEEcceecc-C-CCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCC
Q 016087 151 RFNLPEIILCSNSIEILTLAGLKLE-S-PRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCP 219 (395)
Q Consensus 151 ~~~l~~~l~~~~~L~~L~L~~~~~~-~-~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 219 (395)
...+|..+. ++|+.|+|+++.+. . +.. ..+++|++|+|+++.+..- ....+..+++|+.|++++|.
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 445555443 67777777777665 2 222 2677777777777776321 01123456667777776663
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.36 E-value=0.00071 Score=64.22 Aligned_cols=198 Identities=10% Similarity=0.135 Sum_probs=122.8
Q ss_pred CCcEEEEEecCCCccccccc-ccCCCCccEEEEcceecc--CCCccCCCCCcEEEeeeeec--ChHHHHHHHcCCCCccE
Q 016087 138 NVKELSLELLGNPRFNLPEI-ILCSNSIEILTLAGLKLE--SPRSVKLSSLTKLFLMRVDA--TDLVLQSLLIGCPLIEY 212 (395)
Q Consensus 138 ~l~~L~l~~~~~~~~~l~~~-l~~~~~L~~L~L~~~~~~--~~~~~~~~~Lk~L~L~~~~~--~~~~l~~l~~~~p~Le~ 212 (395)
+++.+.+.. ....++.. +.+|++|+.+.+.++.+. ....+.+.+|+.+.|...-. .. ..+.+|++|+.
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence 556555531 22333333 346999999999987655 34455678999999975422 22 23677999999
Q ss_pred EeeecCCCCceE---eeCCCCCcceEEecccc-ccchhhc-cCCceeEEEEeCCCCc------ccccccccccccceeEe
Q 016087 213 LSLQLCPGLKNL---ELSGLTKLNKFEVCDAE-ELQRLCI-IAQDVQEVSIQGPLPF------QCKFNLASCKFLKYLRF 281 (395)
Q Consensus 213 L~l~~c~~~~~~---~i~~~~~L~~L~i~~c~-~l~~l~~-~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~L 281 (395)
+.+... +..+ ...+ .+|+.+.+...- .+..-.. .+++|+.+.+.++... --.-.+..|++|+.+.|
T Consensus 231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 231 IEIPEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp EECCTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EecCCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 999864 2222 2233 489999885432 3333333 6899999999876532 11234778999999999
Q ss_pred cccccchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCccCEEecccCCCchhh----hhhCC-CcceeEEeee
Q 016087 282 ALTHIKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSLKLLEIYDCLRLVEV----KIAAS-SLSIFKYSGD 351 (395)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~Lk~L~L~~~~~l~~l----~~~~~-~L~~L~~~~~ 351 (395)
..+ +.. .-...+.+|++|+.+.|... ++.+ ...| +|+.+.+.+.. ++.+ ..+++ +++.|.+-..
T Consensus 308 ~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 308 PES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence 753 211 11235678999999999653 4333 2346 89999997542 2222 23343 5666666543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.18 E-value=0.00033 Score=58.86 Aligned_cols=118 Identities=12% Similarity=0.024 Sum_probs=64.6
Q ss_pred ccCCCCccEEEEcce-eccC------CCc-cCCCCCcEEEeeeeecChHHH---HHHHcCCCCccEEeeecCCCCceEee
Q 016087 158 ILCSNSIEILTLAGL-KLES------PRS-VKLSSLTKLFLMRVDATDLVL---QSLLIGCPLIEYLSLQLCPGLKNLEL 226 (395)
Q Consensus 158 l~~~~~L~~L~L~~~-~~~~------~~~-~~~~~Lk~L~L~~~~~~~~~l---~~l~~~~p~Le~L~l~~c~~~~~~~i 226 (395)
+..+++|++|+|++| .+.. ... ...++|++|+|++|.+++.+. ...+..++.|++|+|++|..... -
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~-g- 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS-G- 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-H-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH-H-
Confidence 345677888888877 5541 111 145777788888777755543 33344566677777766642210 0
Q ss_pred CCCCCcceEEeccccccchhhccCCceeEEEE--eCCCCcc-----cccccccccccceeEecccccchHH
Q 016087 227 SGLTKLNKFEVCDAEELQRLCIIAQDVQEVSI--QGPLPFQ-----CKFNLASCKFLKYLRFALTHIKDEW 290 (395)
Q Consensus 227 ~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~ 290 (395)
...+.......++|++|++ +++.... +.-.+...++|++|+|++|.+.+..
T Consensus 110 -------------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 -------------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp -------------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred -------------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 0001111123456677777 4444211 1112344678899999888876553
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.07 E-value=0.0007 Score=55.93 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
++|++|+++++....+ +..+..+++|++|+|++|.++. .....+..+++|+.|+|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCC
Confidence 5666666666653332 2335556666666666666542 11223455566666666654
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.02 E-value=0.00093 Score=55.44 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=32.3
Q ss_pred CceeEEEEeCCCCccc-ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC
Q 016087 251 QDVQEVSIQGPLPFQC-KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC 309 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 309 (395)
++|+.|+++++....+ +..++.+++|+.|+|++|.++. .....+..+++|+.|+|+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC
Confidence 5667777766653332 2335566667777776666543 11223345566666666654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.38 E-value=0.0026 Score=58.76 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred CcccccccccCCCCccEEEEcc-eecc--CCCc-cCCCCCcEEEeeeeecChHHHHHHHcCCCCccEEeeecCCCCceEe
Q 016087 150 PRFNLPEIILCSNSIEILTLAG-LKLE--SPRS-VKLSSLTKLFLMRVDATDLVLQSLLIGCPLIEYLSLQLCPGLKNLE 225 (395)
Q Consensus 150 ~~~~l~~~l~~~~~L~~L~L~~-~~~~--~~~~-~~~~~Lk~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~ 225 (395)
....+|. +..+.+|+.|+|++ +.+. .+.. ..+++|+.|+|++|.+..-. ...+..+++|+.|+|++|... .+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeC
Confidence 4566787 77788899999986 7665 2222 37889999999998873211 123567888999999887533 111
Q ss_pred ---eCCCCCcceEEecccc
Q 016087 226 ---LSGLTKLNKFEVCDAE 241 (395)
Q Consensus 226 ---i~~~~~L~~L~i~~c~ 241 (395)
+..+ +|+.|.+.++.
T Consensus 97 ~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 97 WKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp STTTCSC-CCCEEECCSSC
T ss_pred HHHcccC-CceEEEeeCCC
Confidence 1223 47888887654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.01 E-value=0.011 Score=52.45 Aligned_cols=56 Identities=20% Similarity=0.176 Sum_probs=30.9
Q ss_pred cCCceeEEEEeCCCCccccccccccc--ccceeEecccccch------HHHHHHhccCCCccEEE
Q 016087 249 IAQDVQEVSIQGPLPFQCKFNLASCK--FLKYLRFALTHIKD------EWLCNQISKFPLLESLL 305 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~ 305 (395)
.+|+|+.|+++++..... ..+..+. +|++|+|.+|.+.. .....++..+|+|+.|+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 556666666666553222 1122222 77777777776553 22334566777777764
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.59 E-value=0.025 Score=53.22 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=25.9
Q ss_pred hccCCCccEEEeeCCCCCchhc----cCCCccCEEecccC-CCch-hhhhhCCCcceeEEee
Q 016087 295 ISKFPLLESLLIAGCDDLKSIN----ISSRSLKLLEIYDC-LRLV-EVKIAASSLSIFKYSG 350 (395)
Q Consensus 295 ~~~~~~L~~L~L~~~~~l~~~~----~~~~~Lk~L~L~~~-~~l~-~l~~~~~~L~~L~~~~ 350 (395)
+.+|++|+.+.|.. .++.+. ..|.+|+.+.|... ..+. ....+|++|+++.+..
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 44556666665532 122222 23456666666421 1222 2235567777766643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.57 E-value=0.0075 Score=53.59 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=34.8
Q ss_pred cCCceeEEEEeCCCCccc---ccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCCC
Q 016087 249 IAQDVQEVSIQGPLPFQC---KFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGCD 310 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 310 (395)
..|+|++|+++++....+ +..+..+++|+.|+|++|.+.+..-..-+..+ +|+.|.|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCc
Confidence 467777777777663322 22334677777777777776543211222223 66777766654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.48 E-value=0.02 Score=53.85 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=58.3
Q ss_pred cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchh----ccCCCcc
Q 016087 249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSI----NISSRSL 322 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~L 322 (395)
.+.+|+.+.+......--.-.+..|.+|+.++|...- +. ...+.+|.+|+.+.+... ++.+ ...|++|
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYLVEEIG----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTTCCEEC----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred ccccccccccccccceechhhhcCCCCCCEEEeCCcccEEh----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 5678888888654311112246778999999985431 22 235678999999988643 4333 3457899
Q ss_pred CEEecccC-CCchhhhhhCCCccee
Q 016087 323 KLLEIYDC-LRLVEVKIAASSLSIF 346 (395)
Q Consensus 323 k~L~L~~~-~~l~~l~~~~~~L~~L 346 (395)
+.+.|.+. .....-..+|++|+++
T Consensus 369 ~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred CEEEECCCCEEhhheecCCCCCcEE
Confidence 99998643 2222334668887765
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.33 E-value=0.038 Score=50.79 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=41.5
Q ss_pred EEEEcce-ecc-CCCccCCCCCcEEEeee-eecChHHHHHHHcCCCCccEEeeecCCCCceE---eeCCCCCcceEEecc
Q 016087 166 ILTLAGL-KLE-SPRSVKLSSLTKLFLMR-VDATDLVLQSLLIGCPLIEYLSLQLCPGLKNL---ELSGLTKLNKFEVCD 239 (395)
Q Consensus 166 ~L~L~~~-~~~-~~~~~~~~~Lk~L~L~~-~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~~~~L~~L~i~~ 239 (395)
.++.++. .+. +|....+++|++|+|++ +.+..-. ...+.++++|+.|+|++|.. ..+ .+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCC
Confidence 3455554 444 44433677888888885 7762210 12356678888888887742 222 123455666666665
Q ss_pred c
Q 016087 240 A 240 (395)
Q Consensus 240 c 240 (395)
+
T Consensus 90 N 90 (347)
T 2ifg_A 90 N 90 (347)
T ss_dssp S
T ss_pred C
Confidence 5
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.32 E-value=0.25 Score=46.25 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCCcceEEecccc-ccchhhc-cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccE
Q 016087 228 GLTKLNKFEVCDAE-ELQRLCI-IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLES 303 (395)
Q Consensus 228 ~~~~L~~L~i~~c~-~l~~l~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~ 303 (395)
.+.+|+.+.+.+.. .+..-.. .+++|+.+.+......--.-.+..|.+|+.+.|..+- +.+ ..+.+|.+|++
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~ 338 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLER 338 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCE
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCE
Confidence 45677777775432 2222222 5788888888653321112246778999999996531 332 35678999999
Q ss_pred EEeeC-CCCCch-hccCCCccCEEecccCCCchhhhhhCCCcceeEEeee
Q 016087 304 LLIAG-CDDLKS-INISSRSLKLLEIYDCLRLVEVKIAASSLSIFKYSGD 351 (395)
Q Consensus 304 L~L~~-~~~l~~-~~~~~~~Lk~L~L~~~~~l~~l~~~~~~L~~L~~~~~ 351 (395)
+.|-. ...+.. ....|.+|+.+.+.+......-...|.+|+.+.+..+
T Consensus 339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred EEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 99954 233322 2346789999999754322222356788888887654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.44 E-value=0.3 Score=40.93 Aligned_cols=99 Identities=7% Similarity=0.039 Sum_probs=51.1
Q ss_pred hHHHHHHHcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEEEEeCCCCcc-----cccccc
Q 016087 197 DLVLQSLLIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEVSIQGPLPFQ-----CKFNLA 271 (395)
Q Consensus 197 ~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L~l~~~~~~~-----~~~~~~ 271 (395)
++.+..++...+.|++|++.++..+...-+. .+......-..|+.|+++++...+ +.-.+.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~--------------~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~ 95 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIR--------------SLIEAACNSKHIEKFSLANTAISDSEARGLIELIE 95 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHH--------------HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHH--------------HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh
Confidence 4567778888888888888765222110000 000000122344444444443111 111123
Q ss_pred cccccceeEecccccchHHHHHHhcc---CCCccEEEeeCC
Q 016087 272 SCKFLKYLRFALTHIKDEWLCNQISK---FPLLESLLIAGC 309 (395)
Q Consensus 272 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~ 309 (395)
.-..|++|+|+.|.+.+.....+... -..|++|+|+++
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34678888888888777665554433 345777777654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.34 E-value=0.52 Score=44.01 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=66.4
Q ss_pred cCCceeEEEEeCCCCcccccccccccccceeEecccc--cchHHHHHHhccCCCccEEEeeCCCCCchhc----cCCCcc
Q 016087 249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTH--IKDEWLCNQISKFPLLESLLIAGCDDLKSIN----ISSRSL 322 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~----~~~~~L 322 (395)
.+.+|+++.+......--...+..|++|+.+.+...- +.+ ..+.+|++|+.+.|.. +++.+. ..|.+|
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPE--GITQILDDAFAGCEQL 336 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred ecccccEEecccccceecCcccccccccccccCCCcccccCc----eeecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence 5678888888654321112246678999999996432 322 3578899999999964 243333 357899
Q ss_pred CEEeccc-CCCch-hhhhhCCCcceeEEeeee
Q 016087 323 KLLEIYD-CLRLV-EVKIAASSLSIFKYSGDV 352 (395)
Q Consensus 323 k~L~L~~-~~~l~-~l~~~~~~L~~L~~~~~~ 352 (395)
+.+.|-+ ...+. ....+|.+|+++.+.++.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 9999953 33443 345789999999998864
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.12 E-value=0.75 Score=38.48 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=61.1
Q ss_pred CCCCCcEEEeeee-ecChHHHHHH---HcCCCCccEEeeecCCCCceEeeCCCCCcceEEeccccccchhhccCCceeEE
Q 016087 181 KLSSLTKLFLMRV-DATDLVLQSL---LIGCPLIEYLSLQLCPGLKNLELSGLTKLNKFEVCDAEELQRLCIIAQDVQEV 256 (395)
Q Consensus 181 ~~~~Lk~L~L~~~-~~~~~~l~~l---~~~~p~Le~L~l~~c~~~~~~~i~~~~~L~~L~i~~c~~l~~l~~~~p~L~~L 256 (395)
.-+.|++|+|+++ .+++.+...+ +.....|+.|+|.+|..-.. . +..+......-..|++|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~-g--------------a~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS-E--------------ARGLIELIETSPSLRVL 103 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH-H--------------HTTHHHHHHHCSSCCEE
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChH-H--------------HHHHHHHHhcCCccCeE
Confidence 4678999999986 7766654444 45567788888877743210 0 00111111123445555
Q ss_pred EEeCCCCcc--cc---cccccccccceeEeccc---ccchH---HHHHHhccCCCccEEEeeC
Q 016087 257 SIQGPLPFQ--CK---FNLASCKFLKYLRFALT---HIKDE---WLCNQISKFPLLESLLIAG 308 (395)
Q Consensus 257 ~l~~~~~~~--~~---~~~~~~~~L~~L~L~~~---~~~~~---~~~~l~~~~~~L~~L~L~~ 308 (395)
+++.+...+ .. -.+..-..|+.|+|+++ .+.+. .+...+..-+.|++|+++.
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 555544211 00 11233355777777643 34443 3445556667777777764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.21 E-value=1.8 Score=39.85 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred cCCceeEEEEeCCCCcccccccccccccceeEecccccchHHHHHHhccCCCccEEEeeCC--CCCc-hhccCCCccCEE
Q 016087 249 IAQDVQEVSIQGPLPFQCKFNLASCKFLKYLRFALTHIKDEWLCNQISKFPLLESLLIAGC--DDLK-SINISSRSLKLL 325 (395)
Q Consensus 249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~--~~l~-~~~~~~~~Lk~L 325 (395)
.+.+|+.+.+......--...+..+.+|+.+.+...- .. .-...+.+|++|+.+.+.+. ..+. .....|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~-i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KT-VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SE-ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCCccEeCccccceeehhccccccccc-ee-ccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 4556666666443211011234456667776664331 10 00224566777777777542 1221 122345677777
Q ss_pred ecc-cCCCch-hhhhhCCCcceeEEe
Q 016087 326 EIY-DCLRLV-EVKIAASSLSIFKYS 349 (395)
Q Consensus 326 ~L~-~~~~l~-~l~~~~~~L~~L~~~ 349 (395)
.|. +...+. ....+|.+|+++.+.
T Consensus 316 ~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred EcCccccEEHHHHhhCCCCCCEEEEC
Confidence 774 222333 223556777766653
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.51 E-value=4.7 Score=37.01 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.9
Q ss_pred cCCCCccEEeeec
Q 016087 205 IGCPLIEYLSLQL 217 (395)
Q Consensus 205 ~~~p~Le~L~l~~ 217 (395)
..|..|+...+..
T Consensus 155 ~~~~~l~~~~~~~ 167 (379)
T 4h09_A 155 YKAENLEKIEVSS 167 (379)
T ss_dssp TTCTTCCEEEECT
T ss_pred ccccccccccccc
Confidence 4455565555543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.54 E-value=4.4 Score=31.08 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=29.0
Q ss_pred cccccccCCCCccEEEEcceecc-CCC-c-cCCCCCcEEEeeeeec
Q 016087 153 NLPEIILCSNSIEILTLAGLKLE-SPR-S-VKLSSLTKLFLMRVDA 195 (395)
Q Consensus 153 ~l~~~l~~~~~L~~L~L~~~~~~-~~~-~-~~~~~Lk~L~L~~~~~ 195 (395)
.+|..+ -++|++|+|+++.+. ++. . ..+++|+.|+|.+|.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 566443 246899999998876 332 2 2688889999888877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=49.61 E-value=6.1 Score=30.27 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=19.2
Q ss_pred CceeEEEEeCCCCccccc-ccccccccceeEecccc
Q 016087 251 QDVQEVSIQGPLPFQCKF-NLASCKFLKYLRFALTH 285 (395)
Q Consensus 251 p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~L~~~~ 285 (395)
++|+.|+++++....++. .+..+++|+.|+|.+|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 356666666665333222 24455666666666654
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=23.38 E-value=51 Score=19.95 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=14.9
Q ss_pred ccccCCCCHHHHHHHhcCC
Q 016087 18 IDRISNLPEPILHHILSFL 36 (395)
Q Consensus 18 ~d~is~LPdeil~~Ils~L 36 (395)
.+-|+.||.||..+|++--
T Consensus 18 ~eVF~~LP~dIQ~Ells~~ 36 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSGK 36 (48)
T ss_dssp GGGTTTSCHHHHHHHTTCC
T ss_pred HHHHHHCcHHHHHHHHhcc
Confidence 3458889999999998754
Done!