BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016088
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 51/338 (15%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH 67
V+V+++G G SGL+ L + YVIL+ E W+ +++ L L + +P
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPG 62
Query: 68 LPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS 127
P P+S + +RA+ + YL Y + + P +R R + + E + L+
Sbjct: 63 WPMPASQGPYPARAEVLAYLAQYEQKYAL-PVLRPIRVQRVSHFGERLRVVARDGRQWLA 121
Query: 128 PGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGK 187
R ++ A+G +TP+ +GL SF G +HS Y P+ G
Sbjct: 122 -----------RAVISATGTWGEAYTPEYQGLESFA------GIQLHSAHYSTPAPFAGM 164
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLM 247
V ++G GNSG +I +++ A T + P + VD
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFL-----------------ADDVDG-R 206
Query: 248 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKY----PVIDAGTCEKIKSGQIQVLPGIE 303
V+ R ++ + P +G PV+DA G + +P
Sbjct: 207 VLFERAT----ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARA-----RGVLAAVPPPA 257
Query: 304 SIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDD 341
+ + +G FD++++CTGF+ + + LKG D
Sbjct: 258 RFSPTGMQWADGTERAFDAVIWCTGFRPALSH-LKGLD 294
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + YL+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQY-KNGKP 183
+ S RFLVVA+G SN TP GL F TG+++H+ ++ +G
Sbjct: 143 --------GDEVSARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + YL+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQY-KNGKP 183
+ S RFLVVA+G SN TP GL F TG+++H+ ++ +G
Sbjct: 143 --------GDEVSARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK---QFCQL 65
+V++VGAG +GL Q + E + +W Y R + +
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFS 82
Query: 66 PHLPFPSSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN 124
P L ++ + ++ + + YL+H F++ IR+ V SA DE W V+
Sbjct: 83 PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDR 142
Query: 125 LLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQY-KNGKP 183
+ S RFLVVA+G SN TP GL F TG+++H+ ++ +G
Sbjct: 143 --------GDEVSARFLVVAAGPLSNANTPAFDGLDRF------TGDIVHTARWPHDGVD 188
Query: 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218
+ GK V V+G+G+SG++ +A A + + RS
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRS 223
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
V+V++VGAG SGL L ++E +W Y R + ++C
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65 ----LPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV 120
L + Y S+ + + Y++ F++ I + +V +A++DEATN W V
Sbjct: 77 SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKN 180
++ G I R+L++ASG+ S P P+ GL F + TG H
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
V+V++VGAG SGL L ++E +W Y R + ++C
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65 ----LPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV 120
L + Y S+ + + Y++ F++ I + +V +A++DEATN W V
Sbjct: 77 SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKN 180
++ G I R+L++ASG+ S P P+ GL F + TG H
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
V+V++VGAG SGL L ++E +W Y R + ++C
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSF 76
Query: 65 ----LPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV 120
L + Y S+ + + Y++ F++ I + +V +A++DEATN W V
Sbjct: 77 SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKN 180
++ G I R+L++ASG+ S P P+ GL F + TG H
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK-QFCQ-- 64
V+V++VGAG SGL L ++E +W Y R + ++C
Sbjct: 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYCYSF 76
Query: 65 ----LPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV 120
L + Y S+ + + Y++ F++ I + +V +A++DEATN W V
Sbjct: 77 SEEVLQEWNWTERY---ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTV 133
Query: 121 KASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKN 180
++ G I R+L++ASG+ S P P+ GL F + TG H
Sbjct: 134 DTNH----GDRIR----ARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEP---- 181
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ G+ V V+G+G+SG++++ +A AA+ + R+P
Sbjct: 182 -VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 219
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61
+ ++ ++ +++GAG +G+ A ++ + + +E W Y RL
Sbjct: 4 RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESY 63
Query: 62 ----FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNM 117
F +P F S+ + + Y++ ++ R+ V +A Y E +
Sbjct: 64 AYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRL 123
Query: 118 WNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQ 177
W V N EE + RFL+ A+G S PDI+G+ SF GE HS++
Sbjct: 124 WEVTLDN--------EEVVTCRFLISATGPLSASRMPDIKGIDSF------KGESFHSSR 169
Query: 178 Y---KNGKPYG----GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ G P G GK V V+G+G +G++I A A + + R+P
Sbjct: 170 WPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP 218
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136
++++ + +EYL+ V F++ ++ V SA Y + N+W V + E Y
Sbjct: 83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH--------GEVY 134
Query: 137 SGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196
+++V A G S P++ GL +F GE IH+ + GK G+ V V+G+G+
Sbjct: 135 RAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGKSLAGRRVGVIGTGS 188
Query: 197 SGMEIALDLANHAAKTSLVIRSP 219
+G ++ LA ++ +R+P
Sbjct: 189 TGQQVITSLAPEVEHLTVFVRTP 211
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 274 KAAYGKYPVIDAGTCE-----KIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG 328
K + K P+ D+G E +++ I+ P I + V+ E+G H D +VF TG
Sbjct: 323 KGLFAKRPLCDSGYYEVYNRPNVEAVAIKENP-IREVTAKGVVTEDGVLHELDVLVFATG 381
Query: 329 FK----RSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYC 366
F + ++G D + +ND HW G+ Y
Sbjct: 382 FDAVDGNYRRIEIRGRDGLHIND----------HWDGQPTSYL 414
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136
++++ + +EYL+ V F++ ++ V SA Y + N+W V + E Y
Sbjct: 116 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDH--------GEVY 167
Query: 137 SGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196
+++V A G S P++ GL +F GE IH+ + GK G+ V V+G+G+
Sbjct: 168 RAKYVVNAVGLLSAINFPNLPGLDTF------EGETIHTAAWPEGKSLAGRRVGVIGTGS 221
Query: 197 SGMEIALDLANHAAKTSLVIRSP 219
+G ++ LA ++ +R+P
Sbjct: 222 TGQQVITSLAPEVEHLTVFVRTP 244
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 274 KAAYGKYPVIDAGTCE-----KIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG 328
K + K P+ D+G E +++ I+ P I + V+ E+G H D +VF TG
Sbjct: 356 KGLFAKRPLCDSGYYEVYNRPNVEAVAIKENP-IREVTAKGVVTEDGVLHELDVLVFATG 414
Query: 329 FK----RSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYC 366
F + ++G D + +ND HW G+ Y
Sbjct: 415 FDAVDGNYRRIEIRGRDGLHIND----------HWDGQPTSYL 447
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 40/233 (17%)
Query: 7 GVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK------------- 47
+ I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 48 --KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNIVP 98
Y L + K+ + F +SYP R +Y+ V +
Sbjct: 62 VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGVRK 118
Query: 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158
IR+ +V ++E + + V + + EE+ ++V +G S P+ P+ G
Sbjct: 119 YIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF---DYVVCCTGHFSTPYVPEFEG 175
Query: 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
F G ++H+ +++ + K VL+VGS +S +I + AK
Sbjct: 176 FEKF------GGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAK 222
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 40/233 (17%)
Query: 7 GVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK------------- 47
+ I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 48 --KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNIVP 98
Y L + K+ + F +SYP R +Y+ V +
Sbjct: 62 VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGVRK 118
Query: 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158
IR+ +V ++E + + V + + EE+ ++V +G S P+ P+ G
Sbjct: 119 YIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF---DYVVCCTGHFSTPYVPEFEG 175
Query: 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 176 FEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 40/233 (17%)
Query: 7 GVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK------------- 47
+ I+GAGPSG A A S Q IP ++ E++ + W
Sbjct: 2 ATRIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 48 --KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNIVP 98
Y L + K+ + F +SYP R +Y+ V +
Sbjct: 62 VHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGVRK 118
Query: 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158
IR+ +V ++E + + V + + EE+ ++V +G S P+ P+ G
Sbjct: 119 YIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF---DYVVCCTGHFSTPYVPEFEG 175
Query: 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 176 FEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 222
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 44/237 (18%)
Query: 5 AAGVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK----------- 47
+ + I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 48 ----KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNI 96
Y L + K+ + F +SYP R +Y+ V +
Sbjct: 65 EPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGV 121
Query: 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRF--LVVASGETSNPFTP 154
IR+ +V ++E + + V + + YS F +V +G S P+ P
Sbjct: 122 RKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
+ G F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 177 EFEGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 44/237 (18%)
Query: 5 AAGVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK----------- 47
+ + I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 48 ----KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNI 96
Y L K+ + F +SYP R +Y+ V +
Sbjct: 65 EPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGV 121
Query: 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRF--LVVASGETSNPFTP 154
IR+ +V ++E + + V + + YS F +V +G S P+ P
Sbjct: 122 RKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
+ G F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 177 EFEGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 44/237 (18%)
Query: 5 AAGVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK----------- 47
+ + I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 48 ----KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNI 96
Y L K+ + F +SYP R +Y+ V +
Sbjct: 65 EPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGV 121
Query: 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRF--LVVASGETSNPFTP 154
IR+ +V ++E + + V + + YS F +V +G S P+ P
Sbjct: 122 RKYIRFNTAVRHVEFNEDSQTFTVTVQD-----HTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
+ G F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 177 EFEGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 44/235 (18%)
Query: 7 GVEVIIVGAGPSGLAT-AACLSLQS----IPYVI-LERENCYASIWK------------- 47
+ I+GAGPSG+A A S Q IP ++ E++ + W
Sbjct: 7 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 66
Query: 48 --KYSYDRLRLHLAKQFCQLPHLPFP-------SSYPMFVSRAQFIEYLDHYVSHFNIVP 98
Y L K+ + F +SYP R +Y+ V +
Sbjct: 67 VHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYP---PREVLWDYIKGRVEKAGVRK 123
Query: 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRF--LVVASGETSNPFTPDI 156
IR+ +V ++E + + V + + YS F +V +G S P+ P+
Sbjct: 124 YIRFNTAVRHVEFNEDSQTFTVTVQD-----HTTDTIYSAAFDYVVCCTGHFSTPYVPEF 178
Query: 157 RGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211
G F G ++H+ +++ + K VL+VGS S +I + AK
Sbjct: 179 EGFEKF------GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAK 227
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 42/243 (17%)
Query: 9 EVIIVGAGPSGLATA-ACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLAKQFCQLP 66
++ I+GAGPSGL TA A L+ ++ V L ER +W S +L + L
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 69
Query: 67 HLPF--PSSYPMFVS----------------------RAQFIEYLD-HYVSHFN------ 95
P P++ P++ S + Q +++ H + +
Sbjct: 70 TEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP 129
Query: 96 IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155
++P I+ V + + + K + SP + ++ + + + +G P+ P+
Sbjct: 130 LLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP--ISKDIFDA--VSICNGHYEVPYIPN 185
Query: 156 IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDL---ANHAAKT 212
I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++ L A H
Sbjct: 186 IKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 243
Query: 213 SLV 215
SL+
Sbjct: 244 SLL 246
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 42/243 (17%)
Query: 9 EVIIVGAGPSGLATA-ACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLAKQFCQLP 66
++ I+GAGPSGL TA A L+ ++ V L ER +W S +L + L
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 67
Query: 67 HLPF--PSSYPMFVS----------------------RAQFIEYLD-HYVSHFN------ 95
P P++ P++ S + Q +++ H + +
Sbjct: 68 TEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQP 127
Query: 96 IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155
++P I+ V + + + K + SP + ++ + + + +G P+ P+
Sbjct: 128 LLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP--ISKDIFDA--VSICNGHYEVPYIPN 183
Query: 156 IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDL---ANHAAKT 212
I+GL + + G+ V+HS+ ++ + + G++VLVVG +S ++ L A H
Sbjct: 184 IKGLDEYAKAVPGS--VLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 241
Query: 213 SLV 215
SL+
Sbjct: 242 SLL 244
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 48/219 (21%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILER-----ENCYASIWKKYSYDRLRLHLAKQFC 63
+V+IVGAGP+GL + + + + ++ A +KY YD
Sbjct: 7 DVLIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAG-------- 58
Query: 64 QLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS 123
FP Y ++ L V+ FN V Y + + + +++ V S
Sbjct: 59 ------FPKVYAK-----DLVKGLVEQVAPFNPV----YSLGERAETLEREGDLFKVTTS 103
Query: 124 NLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQY---KN 180
Y+ + +++A+G F P G A G E Y K+
Sbjct: 104 Q--------GNAYTAKAVIIAAG--VGAFEPRRIG-------APGEREFEGRGVYYAVKS 146
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+ GK VL+VG G+S ++ AL+L + A + +L+ R P
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP 185
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239
+G + GK V V+G GNSG+E A+DLA +L+ +P EM ++ +
Sbjct: 349 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP------EMKADQVLQDKVRS 402
Query: 240 CGGVDTLMVMLSRLVYGDLSK 260
VD ++ + V GD SK
Sbjct: 403 LKNVDIILNAQTTEVKGDGSK 423
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 46/217 (21%)
Query: 9 EVIIVGAGPSGLATA--------ACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAK 60
++ I+G GP+G+ A +C ++S+P + + Y +K+ YD
Sbjct: 16 DLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYP---EKHIYD------VA 66
Query: 61 QFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV 120
F ++P + S R L+ V+ + ++ +++ TN NV
Sbjct: 67 GFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYT---------KLDDGTFETRTNTGNV 117
Query: 121 KASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKN 180
Y R +++A+G F P R L + TG ++ K+
Sbjct: 118 ---------------YRSRAVLIAAG--LGAFEP--RKLPQLGNIDHLTGSSVYYA-VKS 157
Query: 181 GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIR 217
+ + GK V++VG G+S ++ + L +AA +LV R
Sbjct: 158 VEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHR 194
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 180 NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239
+G + GK V V+G GNSG+E A+DLA +L+ +P EM ++ +
Sbjct: 138 DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP------EMKADQVLQDKLRS 191
Query: 240 CGGVDTLMVMLSRLVYGDLSK 260
VD ++ + V GD SK
Sbjct: 192 LKNVDIILNAQTTEVKGDGSK 212
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILE-RENCYASIW 46
+V IVGAGPSGLA A L + ++E R+ W
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILER 38
V+V++VGAG GL+TA L+ Q + +++ER
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILE-RENCYASIW 46
+V IVGAGPSGLA A L + ++E R+ W
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILE-RENCYASIW 46
+V IVGAGPSGLA A L + ++E R+ W
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW 45
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILE-RENCYASIWKKYSYDRLRLHLAKQFC 63
+V+IVGAGPSGL A L + +LE R+ W + D L + Q+
Sbjct: 9 DVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTD-TIDGAMLEIGGQWV 63
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER+
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 136 YSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSG 195
+ + +++A+G +P I+G S + T YKN K V V+G G
Sbjct: 101 FEAKSVIIATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKN------KEVAVLGGG 152
Query: 196 NSGMEIALDLANHAAKTSLVIR 217
++ +E A+ LAN K L+ R
Sbjct: 153 DTAVEEAIYLANICKKVYLIHR 174
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQLPH 67
+V+I+G GP+GL A + +ILE+ I W +++ P
Sbjct: 10 DVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAW------------SEEVENFPG 57
Query: 68 LPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS 127
P P ++ + + + F + V+ +D ++ +
Sbjct: 58 FPEP------IAGMELAQRMHQQAEKFGAKVEMD---EVQGVQHDATSHPYPFTV----- 103
Query: 128 PGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGK 187
R Y + +++A+G ++P I G +F G+ + + +G Y GK
Sbjct: 104 --RGYNGEYRAKAVILATG--ADPRKLGIPGEDNFW------GKGVSTCATCDGFFYKGK 153
Query: 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIR 217
V+V+G G++ +E + L A + +++ R
Sbjct: 154 KVVVIGGGDAAVEEGMFLTKFADEVTVIHR 183
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40
+V I+GAGPSGL L I VILER
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERRT 35
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILE-------RENCYASIWKKYSYDR 53
++ + + V++VGAGPSGL A L ++ V+ E R +++ ++ R
Sbjct: 385 IRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGR 444
Query: 54 LRLHLAKQFCQLPHLPFPSSYPM 76
++ + +LP++ PM
Sbjct: 445 VKEYREAVLAELPNVEIYRESPM 467
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 8 VEVIIVGAGPSGLATAACLSLQSIPYVILER 38
+V I+GAGPSGL L I VILER
Sbjct: 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 10 VIIVGAGPSGLATAACLSLQSIPYVILER 38
VI+VGAGP+GL A L L + ++LE+
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 141 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 199
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 200 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 253
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 133 EEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVV 192
++ Y +++++ +G T ++G S + G G ST +G + GK V+ +
Sbjct: 110 DDTYHAKYVIITTGTTHKHL--GVKGESEYF----GKGTSYCSTC--DGYLFKGKRVVTI 161
Query: 193 GSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239
G GNSG A+ ++ + +++ P ++ E Y+ + R +P
Sbjct: 162 GGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--ENAYVQEIKKRNIP 206
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 236 RYVPCGGVDTLMVM----LSRLVYGDLSKYG-----IHKPREGPFFMKAAYGKYPVIDAG 286
+++ VD ++V+ +S V +L + G IH+ + M A + P++D
Sbjct: 140 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ-PILDEL 198
Query: 287 TCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTG------FKRSTNVWL 337
+I ++ I +I GNE+ F++G H+D I+ G F S+N+ L
Sbjct: 199 DKREIP---YRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL 252
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEYLDHYVSHFN--IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139
+ IE + +++ N ++R ++ V +Y + +KA+N + G+ E+ YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGK--EKIYSAE 175
Query: 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVIRS 218
E A LA ++++RS
Sbjct: 224 ECAGFLAGIGLDVTVMVRS 242
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEYLDHYVSHFN--IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139
+ IE + +++ N ++R ++ V +Y + +KA+N + G+ E+ YS
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGK--EKIYSAE 175
Query: 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 176 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 223
Query: 200 EIALDLANHAAKTSLVIRS 218
E A LA ++++RS
Sbjct: 224 ECAGFLAGIGLDVTVMVRS 242
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni
Length = 315
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 139 RFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSG 198
+ ++V +G S P +G F T YKN K V V+G G++
Sbjct: 108 KAVIVCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKN------KEVAVLGGGDTA 159
Query: 199 MEIALDLANHAAKTSLVIR 217
+E AL LAN +K L+ R
Sbjct: 160 LEEALYLANICSKIYLIHR 178
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEYLDHYVSHFN--IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139
+ IE + +++ N ++R ++ V +Y + +KA+N + G+ E+ YS
Sbjct: 114 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGK--EKIYSAE 169
Query: 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 170 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 217
Query: 200 EIALDLANHAAKTSLVIRS 218
E A LA ++++RS
Sbjct: 218 ECAGFLAGIGLDVTVMVRS 236
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 82 QFIEYLDHYVSHFN--IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139
+ IE + +++ N ++R ++ V +Y + +KA+N + G+ E+ YS
Sbjct: 122 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN--NKGK--EKIYSAE 177
Query: 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGM 199
++A+GE P I G +C S+ + + S Y GK LVVG+ +
Sbjct: 178 RFLIATGE--RPRYLGIPGDKEYCISS----DDLFSLPYCPGK------TLVVGASYVAL 225
Query: 200 EIALDLANHAAKTSLVIRS 218
E A LA ++++RS
Sbjct: 226 ECAGFLAGIGLDVTVMVRS 244
>pdb|1Y56|A Chain A, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 493
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 299 LPGIESIRGNE----VIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSY 354
+P ++ + GNE VI N H + D+++F G + N + + G
Sbjct: 277 IPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVL 336
Query: 355 PNHWKGKNGLYCVG 368
+ + K+G+Y G
Sbjct: 337 DEYHRIKDGIYVAG 350
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERE 39
Q V+V+++GAGP+G A+ ++ I+E++
Sbjct: 2 QREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQ 37
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 179 KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY-LGLVLLRY 237
K+G GK ++ SGN+G+ +A A K +L + + + + ++ LG+ L+
Sbjct: 55 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLT 114
Query: 238 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGP 270
G+ + +V D S+Y + K E P
Sbjct: 115 EGAKGMKGAIAKAEEIVASDPSRYVMLKQFENP 147
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219
+N L++GSG S +A L K S++ RSP
Sbjct: 119 QNALILGSGGSAKALACGLKKQGLKVSVLNRSP 151
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 9 EVIIVGAGPSGLATAACLSLQSIPYVILE 37
+VI+VG GPSGL+ A L+ + ++L+
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLD 31
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MKEQAAGVEVIIVGAGPSGLATAACLS 27
M+ A +V+IVGAGP+GL+ A L
Sbjct: 29 MERFAEEADVVIVGAGPAGLSAATRLK 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,656,916
Number of Sequences: 62578
Number of extensions: 549066
Number of successful extensions: 1984
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 198
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)