Query 016088
Match_columns 395
No_of_seqs 186 out of 2394
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 5E-47 1.1E-51 361.3 25.0 363 8-392 2-396 (531)
2 PLN02172 flavin-containing mon 100.0 9.1E-40 2E-44 308.0 31.7 311 7-392 10-352 (461)
3 COG2072 TrkA Predicted flavopr 100.0 1.3E-37 2.8E-42 292.4 32.6 355 6-373 7-389 (443)
4 COG1249 Lpd Pyruvate/2-oxoglut 100.0 7.5E-37 1.6E-41 283.8 23.4 303 7-390 4-334 (454)
5 TIGR01292 TRX_reduct thioredox 100.0 4.1E-36 8.9E-41 272.5 27.9 284 8-392 1-300 (300)
6 COG0492 TrxB Thioredoxin reduc 100.0 3.6E-35 7.8E-40 260.1 28.0 286 7-394 3-302 (305)
7 PRK10262 thioredoxin reductase 100.0 9.3E-35 2E-39 265.3 28.8 291 6-394 5-316 (321)
8 KOG1399 Flavin-containing mono 100.0 5.4E-35 1.2E-39 270.1 25.3 306 7-392 6-333 (448)
9 PLN02507 glutathione reductase 100.0 5.7E-35 1.2E-39 279.7 25.5 304 7-391 25-363 (499)
10 PRK15317 alkyl hydroperoxide r 100.0 2E-34 4.3E-39 278.2 28.2 285 6-392 210-511 (517)
11 PRK05249 soluble pyridine nucl 100.0 7.6E-35 1.6E-39 278.9 25.1 307 6-391 4-335 (461)
12 TIGR01421 gluta_reduc_1 glutat 100.0 9.9E-35 2.1E-39 275.6 24.3 297 7-390 2-327 (450)
13 TIGR03140 AhpF alkyl hydropero 100.0 3.3E-34 7.2E-39 276.3 27.2 287 5-393 210-513 (515)
14 TIGR01424 gluta_reduc_2 glutat 100.0 4.8E-34 1E-38 271.3 27.0 298 7-390 2-325 (446)
15 PRK14694 putative mercuric red 100.0 9.3E-34 2E-38 271.0 26.4 306 5-391 4-335 (468)
16 PRK06116 glutathione reductase 100.0 4.7E-34 1E-38 272.2 23.9 297 7-391 4-328 (450)
17 PRK06370 mercuric reductase; V 100.0 6.6E-34 1.4E-38 272.0 24.2 300 7-391 5-334 (463)
18 PRK08010 pyridine nucleotide-d 100.0 9.4E-34 2E-38 269.5 23.8 298 7-391 3-317 (441)
19 PRK06416 dihydrolipoamide dehy 100.0 1.4E-33 3.1E-38 270.0 25.0 303 6-391 3-334 (462)
20 COG1252 Ndh NADH dehydrogenase 100.0 6.5E-34 1.4E-38 257.5 20.2 291 7-393 3-332 (405)
21 TIGR02053 MerA mercuric reduct 100.0 1.1E-33 2.4E-38 270.7 22.1 301 8-391 1-329 (463)
22 PRK06467 dihydrolipoamide dehy 100.0 3.7E-33 8E-38 266.4 25.1 303 7-391 4-337 (471)
23 TIGR03143 AhpF_homolog putativ 100.0 8.7E-33 1.9E-37 268.3 27.8 284 7-392 4-308 (555)
24 PRK14727 putative mercuric red 100.0 5.9E-33 1.3E-37 265.8 26.1 308 2-391 11-346 (479)
25 TIGR01423 trypano_reduc trypan 100.0 7.1E-33 1.5E-37 263.6 24.3 309 6-391 2-351 (486)
26 PRK13748 putative mercuric red 100.0 1.1E-32 2.3E-37 270.3 26.0 302 7-391 98-428 (561)
27 PLN02546 glutathione reductase 100.0 1.9E-33 4.2E-38 270.2 20.2 299 7-391 79-413 (558)
28 PRK05976 dihydrolipoamide dehy 100.0 9.5E-33 2.1E-37 264.5 24.5 309 7-391 4-343 (472)
29 PTZ00058 glutathione reductase 100.0 1.3E-32 2.9E-37 264.2 24.9 308 6-391 47-432 (561)
30 PRK07845 flavoprotein disulfid 100.0 5.8E-32 1.3E-36 258.0 28.7 308 8-391 2-337 (466)
31 PRK13512 coenzyme A disulfide 100.0 9.7E-33 2.1E-37 261.5 23.0 284 9-391 3-312 (438)
32 PRK07818 dihydrolipoamide dehy 100.0 2.7E-32 6E-37 260.9 25.7 307 7-391 4-336 (466)
33 PTZ00318 NADH dehydrogenase-li 100.0 6.6E-33 1.4E-37 261.6 21.1 300 6-392 9-347 (424)
34 PRK07251 pyridine nucleotide-d 100.0 5.4E-32 1.2E-36 257.2 26.5 297 7-390 3-315 (438)
35 PRK06115 dihydrolipoamide dehy 100.0 5.1E-32 1.1E-36 258.4 25.6 303 7-391 3-338 (466)
36 KOG0405 Pyridine nucleotide-di 100.0 1.7E-32 3.7E-37 234.5 19.7 310 2-392 15-351 (478)
37 PRK07846 mycothione reductase; 100.0 2.8E-32 6E-37 258.7 23.1 297 7-391 1-325 (451)
38 PRK06292 dihydrolipoamide dehy 100.0 3.4E-32 7.3E-37 260.5 23.6 302 7-391 3-331 (460)
39 PRK06327 dihydrolipoamide dehy 100.0 4.5E-32 9.8E-37 259.6 24.2 307 7-391 4-347 (475)
40 PTZ00052 thioredoxin reductase 100.0 2E-32 4.4E-37 262.4 21.7 307 7-391 5-341 (499)
41 TIGR01438 TGR thioredoxin and 100.0 1E-31 2.2E-36 256.4 25.2 303 7-390 2-343 (484)
42 PRK14989 nitrite reductase sub 100.0 3E-32 6.6E-37 273.0 22.2 282 8-391 4-310 (847)
43 TIGR01316 gltA glutamate synth 100.0 1.1E-31 2.4E-36 254.5 22.6 273 6-392 132-449 (449)
44 PTZ00153 lipoamide dehydrogena 100.0 1.3E-31 2.9E-36 260.5 22.7 310 6-391 115-495 (659)
45 PRK12831 putative oxidoreducta 100.0 1E-31 2.2E-36 255.0 21.5 278 6-393 139-461 (464)
46 PRK09564 coenzyme A disulfide 100.0 1.9E-31 4.2E-36 254.4 22.5 288 9-391 2-317 (444)
47 TIGR01350 lipoamide_DH dihydro 100.0 6.5E-31 1.4E-35 251.9 25.3 302 8-391 2-332 (461)
48 PRK06912 acoL dihydrolipoamide 100.0 6.3E-31 1.4E-35 250.8 24.3 301 9-391 2-330 (458)
49 PRK04965 NADH:flavorubredoxin 100.0 4.3E-31 9.3E-36 246.3 21.8 279 8-391 3-302 (377)
50 PRK09754 phenylpropionate diox 100.0 2.8E-31 6.2E-36 248.8 20.1 284 7-392 3-310 (396)
51 TIGR03452 mycothione_red mycot 100.0 9.7E-31 2.1E-35 248.5 22.6 297 7-391 2-328 (452)
52 PRK11749 dihydropyrimidine deh 100.0 5.3E-31 1.1E-35 251.2 20.6 275 6-393 139-452 (457)
53 PRK12779 putative bifunctional 100.0 2.1E-30 4.6E-35 262.1 25.0 275 6-392 305-626 (944)
54 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-30 2.4E-35 262.3 20.6 279 10-391 1-301 (785)
55 PRK09853 putative selenate red 100.0 6.3E-30 1.4E-34 254.6 23.3 287 6-392 538-841 (1019)
56 TIGR03169 Nterm_to_SelD pyridi 100.0 3.1E-30 6.7E-35 239.9 19.8 287 9-392 1-310 (364)
57 PRK12770 putative glutamate sy 100.0 1.7E-29 3.6E-34 233.1 23.4 288 5-393 16-350 (352)
58 PRK12778 putative bifunctional 100.0 9E-30 2E-34 256.0 21.1 276 6-394 430-751 (752)
59 PRK12814 putative NADPH-depend 100.0 2.9E-29 6.3E-34 247.4 21.8 274 7-393 193-501 (652)
60 PF13738 Pyr_redox_3: Pyridine 100.0 1.3E-29 2.9E-34 216.3 16.7 190 11-221 1-202 (203)
61 PRK12810 gltD glutamate syntha 100.0 3.1E-29 6.8E-34 239.4 20.5 284 7-393 143-465 (471)
62 TIGR03315 Se_ygfK putative sel 100.0 1.2E-28 2.6E-33 246.8 22.9 287 7-392 537-839 (1012)
63 KOG0404 Thioredoxin reductase 100.0 1.5E-28 3.3E-33 197.9 17.9 268 7-373 8-295 (322)
64 PRK12775 putative trifunctiona 100.0 1.5E-28 3.3E-33 250.8 22.4 278 6-394 429-756 (1006)
65 PRK12769 putative oxidoreducta 100.0 2.5E-28 5.4E-33 241.9 22.9 277 6-394 326-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 4.1E-28 8.8E-33 230.9 21.6 275 6-393 140-466 (467)
67 KOG1335 Dihydrolipoamide dehyd 100.0 3.7E-28 8E-33 210.7 18.3 306 6-391 38-377 (506)
68 KOG1336 Monodehydroascorbate/f 100.0 4.7E-28 1E-32 217.4 18.6 264 7-373 74-352 (478)
69 KOG4716 Thioredoxin reductase 100.0 4.1E-27 8.9E-32 201.0 20.5 325 5-390 17-364 (503)
70 COG3634 AhpF Alkyl hydroperoxi 100.0 1.8E-27 3.9E-32 203.9 17.3 270 6-375 210-493 (520)
71 PRK12809 putative oxidoreducta 100.0 4.9E-27 1.1E-31 231.7 21.3 276 6-393 309-635 (639)
72 PRK13984 putative oxidoreducta 99.9 1.4E-26 3E-31 228.3 20.2 275 6-393 282-602 (604)
73 TIGR03385 CoA_CoA_reduc CoA-di 99.9 1.8E-26 3.9E-31 218.9 19.1 274 21-391 1-304 (427)
74 TIGR01317 GOGAT_sm_gam glutama 99.9 4.6E-26 9.9E-31 217.7 20.6 306 7-393 143-479 (485)
75 PRK12771 putative glutamate sy 99.9 6.2E-26 1.3E-30 221.5 20.8 274 6-393 136-444 (564)
76 PLN02852 ferredoxin-NADP+ redu 99.9 2E-25 4.3E-30 210.0 22.9 318 6-392 25-421 (491)
77 KOG2495 NADH-dehydrogenase (ub 99.9 1.8E-25 3.9E-30 197.2 19.6 301 6-391 54-395 (491)
78 COG1251 NirB NAD(P)H-nitrite r 99.9 1.5E-25 3.4E-30 210.4 17.6 284 7-392 3-307 (793)
79 TIGR01372 soxA sarcosine oxida 99.9 2.2E-24 4.8E-29 221.8 25.5 279 7-392 163-471 (985)
80 PF13434 K_oxygenase: L-lysine 99.9 2.3E-25 5E-30 202.2 13.1 210 7-233 2-238 (341)
81 COG3486 IucD Lysine/ornithine 99.9 1E-21 2.2E-26 173.3 23.1 355 7-394 5-416 (436)
82 KOG0399 Glutamate synthase [Am 99.9 1.1E-21 2.3E-26 189.7 14.2 303 7-391 1785-2118(2142)
83 COG0493 GltD NADPH-dependent g 99.8 2.6E-20 5.6E-25 173.7 12.9 295 7-391 123-449 (457)
84 COG0446 HcaD Uncharacterized N 99.8 8.1E-19 1.8E-23 166.5 17.6 276 10-390 1-309 (415)
85 KOG1800 Ferredoxin/adrenodoxin 99.8 1.2E-17 2.7E-22 145.6 20.4 148 6-207 19-180 (468)
86 PTZ00188 adrenodoxin reductase 99.8 2.4E-16 5.2E-21 146.3 24.4 168 6-219 38-251 (506)
87 PRK06567 putative bifunctional 99.8 1.9E-17 4.1E-22 163.9 17.4 199 6-238 382-604 (1028)
88 KOG1346 Programmed cell death 99.8 4E-18 8.6E-23 150.1 10.0 301 6-394 177-522 (659)
89 COG4529 Uncharacterized protei 99.8 1.7E-15 3.7E-20 138.0 27.2 358 8-389 2-459 (474)
90 PRK09897 hypothetical protein; 99.7 2.9E-15 6.2E-20 143.2 22.2 178 8-208 2-213 (534)
91 PF07992 Pyr_redox_2: Pyridine 99.6 4.7E-17 1E-21 138.5 3.0 121 9-159 1-130 (201)
92 KOG2755 Oxidoreductase [Genera 99.6 3.4E-15 7.3E-20 124.1 10.4 286 10-372 2-321 (334)
93 COG1148 HdrA Heterodisulfide r 99.6 2.8E-13 6.2E-18 122.2 18.3 39 7-45 124-162 (622)
94 KOG3851 Sulfide:quinone oxidor 99.5 5.9E-13 1.3E-17 114.0 15.1 102 287-391 242-359 (446)
95 COG2081 Predicted flavoprotein 99.5 8.2E-14 1.8E-18 124.0 10.1 135 7-153 3-171 (408)
96 PRK05329 anaerobic glycerol-3- 99.4 4.8E-12 1E-16 118.0 16.8 34 7-40 2-35 (422)
97 PF03486 HI0933_like: HI0933-l 99.4 2.1E-12 4.6E-17 120.0 12.8 134 8-152 1-169 (409)
98 PF13454 NAD_binding_9: FAD-NA 99.4 1.1E-11 2.3E-16 100.5 12.8 126 11-147 1-155 (156)
99 PRK04176 ribulose-1,5-biphosph 99.3 6.8E-11 1.5E-15 103.6 13.2 138 7-149 25-173 (257)
100 TIGR02032 GG-red-SF geranylger 99.3 3.8E-11 8.2E-16 108.5 11.8 131 8-149 1-148 (295)
101 TIGR00292 thiazole biosynthesi 99.3 1E-10 2.3E-15 102.0 13.1 140 7-148 21-169 (254)
102 TIGR02023 BchP-ChlP geranylger 99.3 1.3E-10 2.7E-15 109.2 14.6 136 8-150 1-156 (388)
103 PRK10157 putative oxidoreducta 99.2 1.5E-10 3.3E-15 109.7 15.0 135 1-149 1-164 (428)
104 PRK08244 hypothetical protein; 99.2 3.4E-10 7.3E-15 109.7 15.2 134 7-149 2-159 (493)
105 PRK06834 hypothetical protein; 99.2 3.5E-10 7.5E-15 108.8 15.1 132 7-150 3-157 (488)
106 PRK08773 2-octaprenyl-3-methyl 99.2 2.7E-10 5.8E-15 107.3 13.7 136 1-149 1-169 (392)
107 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.7E-10 3.8E-15 94.1 10.4 136 7-147 30-176 (262)
108 PRK06184 hypothetical protein; 99.2 4.7E-10 1E-14 108.9 15.6 134 7-149 3-168 (502)
109 PRK06847 hypothetical protein; 99.2 6.2E-10 1.3E-14 104.2 15.8 134 7-152 4-166 (375)
110 PRK07190 hypothetical protein; 99.2 4.1E-10 8.8E-15 108.2 14.8 135 1-149 1-165 (487)
111 PLN02463 lycopene beta cyclase 99.2 2.2E-10 4.7E-15 108.3 12.4 130 6-149 27-169 (447)
112 PRK10015 oxidoreductase; Provi 99.2 2.8E-10 6.1E-15 107.8 13.2 135 1-149 1-164 (429)
113 TIGR01790 carotene-cycl lycope 99.2 4.8E-10 1E-14 105.5 14.2 129 9-149 1-141 (388)
114 PF01494 FAD_binding_3: FAD bi 99.2 1.9E-10 4.1E-15 106.7 11.3 134 8-149 2-172 (356)
115 PRK08013 oxidoreductase; Provi 99.2 3.9E-10 8.6E-15 106.3 13.3 133 7-151 3-170 (400)
116 PRK06183 mhpA 3-(3-hydroxyphen 99.2 9.8E-10 2.1E-14 107.5 15.8 138 6-151 9-176 (538)
117 PRK07494 2-octaprenyl-6-methox 99.1 5.2E-10 1.1E-14 105.2 12.9 132 7-150 7-168 (388)
118 COG0654 UbiH 2-polyprenyl-6-me 99.1 6.2E-10 1.3E-14 104.4 12.8 132 7-150 2-163 (387)
119 PRK07364 2-octaprenyl-6-methox 99.1 7.4E-10 1.6E-14 105.2 13.5 137 6-151 17-183 (415)
120 PRK06126 hypothetical protein; 99.1 2E-09 4.3E-14 105.7 16.8 142 2-150 2-189 (545)
121 TIGR00136 gidA glucose-inhibit 99.1 4.1E-09 8.8E-14 101.3 18.3 131 8-149 1-154 (617)
122 PRK06185 hypothetical protein; 99.1 9.7E-10 2.1E-14 104.1 14.1 140 1-149 1-169 (407)
123 COG0644 FixC Dehydrogenases (f 99.1 6.4E-10 1.4E-14 104.5 12.6 130 7-147 3-150 (396)
124 PRK07045 putative monooxygenas 99.1 1.4E-09 3E-14 102.2 14.9 136 6-151 4-167 (388)
125 PRK07333 2-octaprenyl-6-methox 99.1 7.6E-10 1.6E-14 104.7 13.0 131 8-150 2-168 (403)
126 PRK08020 ubiF 2-octaprenyl-3-m 99.1 7E-10 1.5E-14 104.4 12.5 133 6-150 4-170 (391)
127 PRK05714 2-octaprenyl-3-methyl 99.1 5.5E-10 1.2E-14 105.6 11.8 133 7-151 2-170 (405)
128 PF01946 Thi4: Thi4 family; PD 99.1 8.4E-10 1.8E-14 90.8 10.9 138 7-147 17-163 (230)
129 PRK08132 FAD-dependent oxidore 99.1 2.4E-09 5.1E-14 105.1 16.1 139 3-150 19-186 (547)
130 PLN00093 geranylgeranyl diphos 99.1 2.1E-09 4.5E-14 102.1 14.9 139 6-149 38-199 (450)
131 TIGR02028 ChlP geranylgeranyl 99.1 2.7E-09 6E-14 100.2 15.0 137 8-149 1-160 (398)
132 PRK06753 hypothetical protein; 99.1 1.9E-09 4.2E-14 100.8 13.5 128 8-150 1-153 (373)
133 PRK09126 hypothetical protein; 99.1 2.5E-09 5.4E-14 100.8 13.6 131 7-149 3-167 (392)
134 COG3380 Predicted NAD/FAD-depe 99.1 9.8E-10 2.1E-14 92.6 9.4 123 9-147 3-158 (331)
135 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.2E-09 2.7E-14 102.6 11.4 130 9-150 1-164 (385)
136 PRK06617 2-octaprenyl-6-methox 99.1 2.2E-09 4.8E-14 100.3 12.9 131 8-152 2-163 (374)
137 PRK08163 salicylate hydroxylas 99.1 1.3E-09 2.8E-14 102.8 11.4 133 7-151 4-168 (396)
138 PRK07608 ubiquinone biosynthes 99.0 2.3E-09 4.9E-14 100.9 12.6 131 7-150 5-168 (388)
139 PF05834 Lycopene_cycl: Lycope 99.0 2.8E-09 6.1E-14 99.3 12.9 126 9-147 1-140 (374)
140 PLN02697 lycopene epsilon cycl 99.0 2.9E-09 6.2E-14 102.3 12.9 129 7-149 108-248 (529)
141 PRK07588 hypothetical protein; 99.0 2.3E-09 5E-14 100.9 12.1 132 8-152 1-161 (391)
142 PRK11445 putative oxidoreducta 99.0 5.1E-09 1.1E-13 96.9 13.9 132 8-150 2-158 (351)
143 TIGR00275 flavoprotein, HI0933 99.0 3.3E-09 7.1E-14 99.7 12.5 128 11-151 1-162 (400)
144 TIGR01989 COQ6 Ubiquinone bios 99.0 3.4E-09 7.3E-14 101.1 12.5 134 8-151 1-185 (437)
145 PRK08243 4-hydroxybenzoate 3-m 99.0 6.1E-09 1.3E-13 98.0 13.9 137 7-152 2-166 (392)
146 KOG2820 FAD-dependent oxidored 99.0 4.6E-09 1E-13 91.3 11.8 145 1-155 1-218 (399)
147 PF01266 DAO: FAD dependent ox 99.0 2.3E-09 4.9E-14 99.6 10.6 59 79-150 145-204 (358)
148 TIGR01984 UbiH 2-polyprenyl-6- 99.0 2.7E-09 5.8E-14 100.2 10.9 130 9-150 1-163 (382)
149 PRK05732 2-octaprenyl-6-methox 99.0 5.2E-09 1.1E-13 98.7 12.8 132 7-150 3-170 (395)
150 PRK07236 hypothetical protein; 99.0 1.2E-08 2.6E-13 95.8 14.9 132 7-152 6-157 (386)
151 PRK08294 phenol 2-monooxygenas 99.0 1.6E-08 3.6E-13 100.2 15.6 143 6-150 31-211 (634)
152 PRK05192 tRNA uridine 5-carbox 99.0 5.7E-09 1.2E-13 100.5 11.9 130 7-149 4-157 (618)
153 PRK08849 2-octaprenyl-3-methyl 99.0 9.1E-09 2E-13 96.5 13.2 133 7-151 3-169 (384)
154 PRK08850 2-octaprenyl-6-methox 99.0 8E-09 1.7E-13 97.7 12.8 132 7-150 4-169 (405)
155 PRK13369 glycerol-3-phosphate 98.9 1.8E-08 3.9E-13 97.6 15.1 62 81-150 155-216 (502)
156 PRK12266 glpD glycerol-3-phosp 98.9 1.6E-08 3.6E-13 97.9 14.7 43 1-44 1-43 (508)
157 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 1.2E-08 2.5E-13 95.9 12.9 136 8-152 3-166 (390)
158 PRK06481 fumarate reductase fl 98.9 2.7E-08 5.9E-13 96.4 15.7 137 6-150 60-252 (506)
159 TIGR01377 soxA_mon sarcosine o 98.9 1.3E-08 2.9E-13 95.4 13.0 60 79-151 143-202 (380)
160 TIGR01813 flavo_cyto_c flavocy 98.9 3.2E-08 6.8E-13 94.6 15.6 135 9-150 1-193 (439)
161 PLN02661 Putative thiazole syn 98.9 7E-09 1.5E-13 93.2 10.3 138 7-147 92-242 (357)
162 PRK11259 solA N-methyltryptoph 98.9 1.5E-08 3.3E-13 94.9 13.1 62 79-153 147-208 (376)
163 PRK06996 hypothetical protein; 98.9 1.5E-08 3.2E-13 95.6 12.5 133 5-147 9-172 (398)
164 PF12831 FAD_oxidored: FAD dep 98.9 1E-09 2.2E-14 104.1 4.6 131 9-147 1-148 (428)
165 PF00070 Pyr_redox: Pyridine n 98.9 2.5E-08 5.5E-13 70.8 10.5 79 9-124 1-79 (80)
166 PRK07538 hypothetical protein; 98.9 4.3E-08 9.4E-13 92.9 15.3 138 8-151 1-167 (413)
167 PRK05868 hypothetical protein; 98.9 3.9E-08 8.4E-13 91.7 14.5 132 8-152 2-163 (372)
168 COG0029 NadB Aspartate oxidase 98.9 5.5E-08 1.2E-12 89.4 14.5 133 9-149 9-196 (518)
169 TIGR03219 salicylate_mono sali 98.9 2.4E-08 5.3E-13 94.7 12.7 129 8-150 1-160 (414)
170 PRK06475 salicylate hydroxylas 98.9 2.5E-08 5.4E-13 94.1 12.6 136 8-152 3-170 (400)
171 PRK11728 hydroxyglutarate oxid 98.9 3.1E-08 6.6E-13 93.3 12.9 58 79-149 147-204 (393)
172 PF00070 Pyr_redox: Pyridine n 98.9 6.9E-09 1.5E-13 73.7 6.5 74 188-315 1-80 (80)
173 COG0579 Predicted dehydrogenas 98.9 9.6E-09 2.1E-13 94.9 9.1 62 79-150 151-212 (429)
174 PLN02985 squalene monooxygenas 98.8 5.4E-08 1.2E-12 94.1 14.3 138 6-151 42-210 (514)
175 PRK11101 glpA sn-glycerol-3-ph 98.8 5.2E-08 1.1E-12 95.2 13.9 36 7-42 6-41 (546)
176 PF13450 NAD_binding_8: NAD(P) 98.8 5.2E-09 1.1E-13 71.3 4.8 50 12-61 1-50 (68)
177 PF00890 FAD_binding_2: FAD bi 98.8 5.3E-08 1.2E-12 92.5 13.4 136 9-150 1-204 (417)
178 PTZ00383 malate:quinone oxidor 98.8 6.5E-08 1.4E-12 92.6 12.7 62 79-150 209-274 (497)
179 PRK13339 malate:quinone oxidor 98.8 1.2E-07 2.7E-12 90.4 14.4 39 5-43 4-44 (497)
180 COG0578 GlpA Glycerol-3-phosph 98.8 7.4E-08 1.6E-12 91.0 12.5 42 6-47 11-52 (532)
181 PF01134 GIDA: Glucose inhibit 98.8 2.7E-08 5.9E-13 90.9 8.8 127 9-147 1-150 (392)
182 PRK08274 tricarballylate dehyd 98.8 2.2E-07 4.8E-12 89.5 15.6 137 7-150 4-193 (466)
183 PRK07121 hypothetical protein; 98.8 2.9E-07 6.3E-12 89.2 16.4 39 6-44 19-57 (492)
184 PLN02464 glycerol-3-phosphate 98.8 1.2E-07 2.6E-12 93.8 13.8 39 6-44 70-108 (627)
185 TIGR03364 HpnW_proposed FAD de 98.8 8.5E-08 1.8E-12 89.5 12.1 34 8-41 1-34 (365)
186 PRK12409 D-amino acid dehydrog 98.8 1.9E-07 4.1E-12 88.6 14.6 63 81-150 197-259 (410)
187 PRK05976 dihydrolipoamide dehy 98.8 2.6E-07 5.6E-12 89.1 15.7 106 7-155 180-285 (472)
188 PRK08958 sdhA succinate dehydr 98.8 2.7E-07 5.8E-12 90.9 15.8 145 1-150 1-207 (588)
189 PRK08275 putative oxidoreducta 98.8 3.1E-07 6.8E-12 90.1 16.2 145 1-150 3-201 (554)
190 TIGR01789 lycopene_cycl lycope 98.7 8.2E-08 1.8E-12 89.2 11.5 121 9-148 1-137 (370)
191 TIGR01373 soxB sarcosine oxida 98.7 1.4E-07 3.1E-12 89.3 13.2 35 6-40 29-65 (407)
192 TIGR03329 Phn_aa_oxid putative 98.7 8.8E-08 1.9E-12 92.0 11.8 60 79-152 181-240 (460)
193 PRK01747 mnmC bifunctional tRN 98.7 6.9E-08 1.5E-12 96.8 11.3 60 79-151 406-465 (662)
194 PRK09078 sdhA succinate dehydr 98.7 6.8E-08 1.5E-12 95.3 10.8 38 6-43 11-48 (598)
195 TIGR01350 lipoamide_DH dihydro 98.7 5.1E-07 1.1E-11 87.0 16.4 103 7-154 170-272 (461)
196 PLN00128 Succinate dehydrogena 98.7 4.4E-07 9.5E-12 89.9 15.9 142 6-152 49-253 (635)
197 PTZ00139 Succinate dehydrogena 98.7 5.2E-07 1.1E-11 89.3 16.4 142 6-152 28-232 (617)
198 PRK07804 L-aspartate oxidase; 98.7 2.1E-07 4.6E-12 90.9 13.4 140 6-150 15-211 (541)
199 PRK08401 L-aspartate oxidase; 98.7 2.1E-07 4.6E-12 89.3 12.9 130 8-151 2-177 (466)
200 PRK07057 sdhA succinate dehydr 98.7 8.3E-07 1.8E-11 87.6 17.2 38 6-43 11-48 (591)
201 COG1249 Lpd Pyruvate/2-oxoglut 98.7 3.3E-07 7.2E-12 86.3 13.5 105 7-156 173-277 (454)
202 PRK06263 sdhA succinate dehydr 98.7 4.9E-07 1.1E-11 88.6 15.1 143 1-150 1-198 (543)
203 PRK04965 NADH:flavorubredoxin 98.7 2.5E-07 5.3E-12 86.6 12.4 100 7-152 141-240 (377)
204 PF04820 Trp_halogenase: Trypt 98.7 6.2E-08 1.3E-12 92.3 8.3 59 78-147 151-209 (454)
205 PLN02927 antheraxanthin epoxid 98.7 2.6E-07 5.7E-12 90.7 12.4 131 6-150 80-249 (668)
206 PRK06854 adenylylsulfate reduc 98.7 5.6E-07 1.2E-11 89.0 14.8 138 7-150 11-196 (608)
207 TIGR00551 nadB L-aspartate oxi 98.7 4.5E-07 9.7E-12 87.7 13.9 134 7-150 2-190 (488)
208 TIGR01320 mal_quin_oxido malat 98.7 4.3E-07 9.4E-12 87.2 13.5 65 80-150 177-241 (483)
209 PRK08641 sdhA succinate dehydr 98.7 8.8E-07 1.9E-11 87.4 16.0 37 7-43 3-39 (589)
210 PRK06452 sdhA succinate dehydr 98.6 6.8E-07 1.5E-11 87.8 15.0 136 7-149 5-198 (566)
211 PRK07573 sdhA succinate dehydr 98.6 8E-07 1.7E-11 88.3 15.6 36 7-42 35-70 (640)
212 TIGR03378 glycerol3P_GlpB glyc 98.6 1.3E-05 2.8E-10 74.5 22.2 33 8-40 1-33 (419)
213 PRK05945 sdhA succinate dehydr 98.6 3.2E-07 7E-12 90.3 12.4 138 7-151 3-199 (575)
214 PRK06912 acoL dihydrolipoamide 98.6 1.6E-06 3.5E-11 83.2 16.7 102 7-154 170-271 (458)
215 TIGR01812 sdhA_frdA_Gneg succi 98.6 9.6E-07 2.1E-11 87.1 15.0 35 9-43 1-35 (566)
216 PRK07251 pyridine nucleotide-d 98.6 6.8E-07 1.5E-11 85.4 13.6 100 7-154 157-256 (438)
217 TIGR02053 MerA mercuric reduct 98.6 2.8E-06 6E-11 81.9 17.6 105 7-155 166-270 (463)
218 KOG2415 Electron transfer flav 98.6 2.4E-07 5.2E-12 83.0 9.3 145 2-148 71-255 (621)
219 PRK06175 L-aspartate oxidase; 98.6 7.8E-07 1.7E-11 84.5 13.4 37 7-44 4-40 (433)
220 PRK07818 dihydrolipoamide dehy 98.6 2.1E-06 4.5E-11 82.8 16.2 103 7-154 172-276 (466)
221 PF06039 Mqo: Malate:quinone o 98.6 2.8E-07 6E-12 84.6 9.5 65 81-151 181-246 (488)
222 PRK07843 3-ketosteroid-delta-1 98.6 1E-06 2.2E-11 86.5 14.2 44 1-44 1-44 (557)
223 PRK09231 fumarate reductase fl 98.6 8.4E-07 1.8E-11 87.4 13.7 38 7-44 4-43 (582)
224 PLN02815 L-aspartate oxidase 98.6 1E-06 2.3E-11 86.5 14.1 37 7-44 29-65 (594)
225 PRK06416 dihydrolipoamide dehy 98.6 1.2E-06 2.6E-11 84.3 14.4 105 7-155 172-276 (462)
226 PRK05257 malate:quinone oxidor 98.6 6.5E-07 1.4E-11 86.1 12.2 63 82-150 184-247 (494)
227 PRK06069 sdhA succinate dehydr 98.6 7E-07 1.5E-11 88.1 12.5 38 7-44 5-45 (577)
228 PRK05249 soluble pyridine nucl 98.6 1.1E-06 2.3E-11 84.7 13.6 101 7-154 175-275 (461)
229 PRK09754 phenylpropionate diox 98.6 6.1E-07 1.3E-11 84.5 11.6 100 7-153 144-243 (396)
230 PRK12839 hypothetical protein; 98.6 2.9E-06 6.2E-11 83.3 16.6 45 1-45 1-46 (572)
231 PRK07803 sdhA succinate dehydr 98.6 1.7E-06 3.7E-11 85.9 15.1 37 7-43 8-44 (626)
232 PRK06116 glutathione reductase 98.6 1.2E-06 2.5E-11 84.1 13.5 102 7-154 167-268 (450)
233 COG1252 Ndh NADH dehydrogenase 98.5 5.9E-07 1.3E-11 82.6 10.6 101 8-156 156-269 (405)
234 PTZ00367 squalene epoxidase; P 98.5 9E-07 1.9E-11 86.3 12.4 35 6-40 32-66 (567)
235 PRK08205 sdhA succinate dehydr 98.5 3.1E-06 6.7E-11 83.6 16.3 37 7-44 5-41 (583)
236 PRK12835 3-ketosteroid-delta-1 98.5 2.8E-06 6.1E-11 83.7 15.9 39 6-44 10-48 (584)
237 TIGR01176 fum_red_Fp fumarate 98.5 1.4E-06 3E-11 85.7 13.7 38 7-44 3-42 (580)
238 PRK12842 putative succinate de 98.5 1.5E-06 3.3E-11 85.7 14.0 39 6-44 8-46 (574)
239 PRK13977 myosin-cross-reactive 98.5 9.8E-07 2.1E-11 84.5 12.0 40 7-46 22-65 (576)
240 PRK00711 D-amino acid dehydrog 98.5 1.1E-06 2.3E-11 83.6 12.3 33 9-41 2-34 (416)
241 PRK06327 dihydrolipoamide dehy 98.5 6.3E-06 1.4E-10 79.5 17.6 105 7-154 183-287 (475)
242 PRK06370 mercuric reductase; V 98.5 2.4E-06 5.1E-11 82.3 14.1 104 7-154 171-274 (463)
243 PRK12837 3-ketosteroid-delta-1 98.5 5.7E-06 1.2E-10 80.5 16.8 43 1-44 1-43 (513)
244 TIGR01424 gluta_reduc_2 glutat 98.5 2E-06 4.4E-11 82.3 13.1 101 7-154 166-266 (446)
245 COG0665 DadA Glycine/D-amino a 98.5 9.6E-07 2.1E-11 83.1 10.8 37 7-43 4-40 (387)
246 TIGR01811 sdhA_Bsu succinate d 98.5 2.9E-06 6.2E-11 83.9 14.2 33 10-42 1-33 (603)
247 PRK07395 L-aspartate oxidase; 98.5 1.3E-06 2.9E-11 85.3 11.8 38 6-44 8-45 (553)
248 PRK06292 dihydrolipoamide dehy 98.5 7E-06 1.5E-10 79.1 16.2 104 7-155 169-272 (460)
249 PRK12845 3-ketosteroid-delta-1 98.5 8.4E-06 1.8E-10 79.9 16.7 39 6-45 15-53 (564)
250 PRK06134 putative FAD-binding 98.5 8.3E-06 1.8E-10 80.5 16.8 39 6-44 11-49 (581)
251 PRK08626 fumarate reductase fl 98.5 3.9E-06 8.4E-11 83.7 14.5 37 7-43 5-41 (657)
252 TIGR01421 gluta_reduc_1 glutat 98.5 3.6E-06 7.7E-11 80.6 13.8 103 7-154 166-268 (450)
253 COG1233 Phytoene dehydrogenase 98.4 2.7E-07 5.9E-12 88.9 6.2 51 7-57 3-53 (487)
254 PLN02507 glutathione reductase 98.4 3.6E-06 7.7E-11 81.5 13.8 101 7-154 203-303 (499)
255 PRK14727 putative mercuric red 98.4 3.5E-06 7.7E-11 81.3 13.7 99 7-154 188-286 (479)
256 PRK14694 putative mercuric red 98.4 3.1E-06 6.8E-11 81.5 13.3 99 7-154 178-276 (468)
257 PTZ00306 NADH-dependent fumara 98.4 5.6E-06 1.2E-10 87.9 16.1 40 6-45 408-447 (1167)
258 PRK06115 dihydrolipoamide dehy 98.4 3.8E-06 8.3E-11 80.8 13.8 106 7-154 174-279 (466)
259 PRK09077 L-aspartate oxidase; 98.4 5.6E-06 1.2E-10 80.9 15.0 38 6-44 7-44 (536)
260 PRK09564 coenzyme A disulfide 98.4 2.5E-06 5.4E-11 81.8 12.4 100 7-153 149-248 (444)
261 PRK07845 flavoprotein disulfid 98.4 3.3E-06 7.2E-11 81.2 13.2 100 8-154 178-277 (466)
262 PRK08071 L-aspartate oxidase; 98.4 3.6E-06 7.8E-11 81.7 13.5 37 7-44 3-39 (510)
263 KOG2614 Kynurenine 3-monooxyge 98.4 1.9E-06 4.1E-11 77.8 10.5 35 8-42 3-37 (420)
264 KOG1335 Dihydrolipoamide dehyd 98.4 6.4E-06 1.4E-10 73.3 13.4 158 7-210 211-368 (506)
265 PRK07846 mycothione reductase; 98.4 8.5E-06 1.9E-10 78.0 15.4 101 7-155 166-266 (451)
266 PRK12844 3-ketosteroid-delta-1 98.4 1.2E-05 2.5E-10 79.0 16.4 40 6-45 5-44 (557)
267 PRK08010 pyridine nucleotide-d 98.4 4.5E-06 9.8E-11 79.8 13.2 100 7-154 158-257 (441)
268 PRK13748 putative mercuric red 98.4 4E-06 8.7E-11 82.8 13.0 99 7-154 270-368 (561)
269 TIGR03385 CoA_CoA_reduc CoA-di 98.4 3.6E-06 7.7E-11 80.3 12.2 100 7-154 137-236 (427)
270 COG2081 Predicted flavoprotein 98.4 1.4E-06 3.1E-11 78.4 8.7 144 186-332 3-168 (408)
271 TIGR03452 mycothione_red mycot 98.4 1.2E-05 2.6E-10 77.1 15.5 100 7-154 169-268 (452)
272 COG0445 GidA Flavin-dependent 98.4 1.1E-06 2.4E-11 81.9 8.0 131 7-148 4-157 (621)
273 PRK06467 dihydrolipoamide dehy 98.4 6.2E-06 1.4E-10 79.4 13.6 104 7-154 174-277 (471)
274 PRK13512 coenzyme A disulfide 98.4 2.7E-06 5.9E-11 81.2 11.0 97 7-154 148-244 (438)
275 KOG1298 Squalene monooxygenase 98.4 1.7E-06 3.8E-11 76.9 8.8 134 6-152 44-211 (509)
276 TIGR01438 TGR thioredoxin and 98.4 8.3E-06 1.8E-10 78.7 14.2 102 8-154 181-282 (484)
277 PRK08255 salicylyl-CoA 5-hydro 98.4 1.4E-06 3E-11 88.6 9.2 119 8-150 1-142 (765)
278 PRK12843 putative FAD-binding 98.4 1.7E-05 3.6E-10 78.3 16.3 40 7-46 16-55 (578)
279 PRK14989 nitrite reductase sub 98.4 3.7E-06 8E-11 85.9 11.9 103 7-153 145-247 (847)
280 TIGR01423 trypano_reduc trypan 98.4 1.9E-05 4E-10 76.1 16.1 102 7-154 187-291 (486)
281 PTZ00052 thioredoxin reductase 98.4 7.2E-06 1.6E-10 79.5 13.4 100 7-154 182-281 (499)
282 KOG2404 Fumarate reductase, fl 98.3 6.3E-06 1.4E-10 71.7 10.5 137 9-150 11-207 (477)
283 COG1053 SdhA Succinate dehydro 98.3 7.8E-06 1.7E-10 79.4 12.4 41 4-44 3-43 (562)
284 PRK07208 hypothetical protein; 98.3 1.3E-06 2.9E-11 84.5 6.8 43 7-49 4-46 (479)
285 TIGR01292 TRX_reduct thioredox 98.3 2.3E-06 5E-11 77.4 7.9 109 188-334 2-115 (300)
286 KOG0029 Amine oxidase [Seconda 98.3 9.8E-07 2.1E-11 84.3 5.6 40 6-45 14-53 (501)
287 TIGR02374 nitri_red_nirB nitri 98.3 5.6E-06 1.2E-10 84.4 11.3 102 7-154 140-241 (785)
288 PRK12834 putative FAD-binding 98.3 1.7E-05 3.8E-10 77.8 14.4 38 7-44 4-43 (549)
289 PTZ00058 glutathione reductase 98.3 1.3E-05 2.7E-10 78.3 13.1 103 7-154 237-339 (561)
290 TIGR02485 CobZ_N-term precorri 98.3 9.1E-06 2E-10 77.5 11.9 61 80-149 122-183 (432)
291 TIGR02061 aprA adenosine phosp 98.3 6.2E-06 1.3E-10 81.2 10.5 33 9-41 1-37 (614)
292 PRK07512 L-aspartate oxidase; 98.2 1.2E-05 2.7E-10 78.1 12.4 34 6-41 8-41 (513)
293 COG0446 HcaD Uncharacterized N 98.2 1.1E-05 2.4E-10 76.4 12.0 101 8-152 137-238 (415)
294 PRK11883 protoporphyrinogen ox 98.2 1.7E-06 3.7E-11 83.1 5.7 44 8-51 1-46 (451)
295 PRK10262 thioredoxin reductase 98.2 2.3E-05 4.9E-10 71.7 12.8 106 7-154 146-251 (321)
296 PTZ00153 lipoamide dehydrogena 98.2 2.1E-05 4.6E-10 77.9 13.0 110 7-155 312-431 (659)
297 PRK13800 putative oxidoreducta 98.2 4.6E-05 9.9E-10 79.1 16.0 35 7-41 13-47 (897)
298 PLN02576 protoporphyrinogen ox 98.2 3.1E-06 6.7E-11 82.4 6.9 42 6-47 11-53 (496)
299 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 7.6E-06 1.6E-10 76.3 8.8 36 8-43 1-36 (433)
300 PLN02546 glutathione reductase 98.2 3E-05 6.5E-10 75.8 13.0 102 7-154 252-353 (558)
301 PTZ00318 NADH dehydrogenase-li 98.2 1.6E-05 3.4E-10 75.7 10.8 91 8-147 174-278 (424)
302 TIGR00562 proto_IX_ox protopor 98.1 3.5E-06 7.6E-11 81.2 6.2 42 7-48 2-47 (462)
303 PLN02676 polyamine oxidase 98.1 4.2E-06 9.1E-11 80.7 6.7 49 5-53 24-73 (487)
304 TIGR03169 Nterm_to_SelD pyridi 98.1 6.2E-06 1.3E-10 76.9 7.7 105 188-335 1-111 (364)
305 KOG2853 Possible oxidoreductas 98.1 2.6E-05 5.6E-10 68.5 10.6 36 6-41 85-124 (509)
306 TIGR02733 desat_CrtD C-3',4' d 98.1 4.6E-06 1E-10 81.0 6.6 39 8-46 2-40 (492)
307 PLN02268 probable polyamine ox 98.1 3.9E-06 8.4E-11 80.2 5.9 40 8-47 1-40 (435)
308 PRK07233 hypothetical protein; 98.1 3.3E-06 7.2E-11 80.7 5.2 39 9-47 1-39 (434)
309 KOG1336 Monodehydroascorbate/f 98.1 2.8E-05 6.1E-10 71.6 10.7 107 7-157 213-319 (478)
310 TIGR02730 carot_isom carotene 98.1 5.1E-06 1.1E-10 80.6 6.0 39 8-46 1-39 (493)
311 TIGR00031 UDP-GALP_mutase UDP- 98.1 4.5E-06 9.8E-11 77.0 5.2 41 8-48 2-42 (377)
312 TIGR02734 crtI_fam phytoene de 98.0 6.1E-06 1.3E-10 80.4 5.6 37 10-46 1-37 (502)
313 COG3349 Uncharacterized conser 98.0 7E-06 1.5E-10 76.6 5.6 38 8-45 1-38 (485)
314 KOG0042 Glycerol-3-phosphate d 98.0 6.6E-06 1.4E-10 76.4 5.3 41 7-47 67-107 (680)
315 COG2509 Uncharacterized FAD-de 98.0 4.5E-05 9.8E-10 69.8 10.1 58 81-149 173-230 (486)
316 KOG2844 Dimethylglycine dehydr 98.0 2.8E-05 6.1E-10 74.1 8.9 59 79-149 185-243 (856)
317 COG1232 HemY Protoporphyrinoge 98.0 9.2E-06 2E-10 76.0 5.6 41 9-49 2-44 (444)
318 PLN02568 polyamine oxidase 98.0 1.1E-05 2.3E-10 78.6 6.2 42 7-48 5-51 (539)
319 KOG0685 Flavin-containing amin 98.0 1E-05 2.2E-10 74.3 5.6 42 7-48 21-63 (498)
320 TIGR03140 AhpF alkyl hydropero 98.0 0.0001 2.2E-09 71.9 12.7 101 7-154 352-453 (515)
321 KOG2960 Protein involved in th 98.0 7E-06 1.5E-10 67.0 3.7 139 7-147 76-232 (328)
322 KOG2495 NADH-dehydrogenase (ub 97.9 3.7E-05 7.9E-10 69.7 8.2 137 7-196 218-369 (491)
323 COG0562 Glf UDP-galactopyranos 97.9 1.2E-05 2.6E-10 70.1 5.0 42 8-49 2-43 (374)
324 PF01134 GIDA: Glucose inhibit 97.9 5.2E-06 1.1E-10 76.1 2.5 138 188-329 1-150 (392)
325 PRK12416 protoporphyrinogen ox 97.9 1.3E-05 2.9E-10 77.2 5.4 41 8-48 2-48 (463)
326 PRK12779 putative bifunctional 97.9 1.6E-05 3.5E-10 82.1 6.2 101 185-332 305-406 (944)
327 PF13434 K_oxygenase: L-lysine 97.9 0.00012 2.7E-09 67.0 11.0 131 6-146 189-338 (341)
328 KOG2665 Predicted FAD-dependen 97.9 0.0001 2.3E-09 64.1 9.7 38 6-43 47-86 (453)
329 TIGR02731 phytoene_desat phyto 97.9 1.5E-05 3.3E-10 76.6 5.2 37 9-45 1-37 (453)
330 PRK04176 ribulose-1,5-biphosph 97.9 2.9E-05 6.2E-10 68.2 6.4 191 184-393 23-255 (257)
331 KOG2311 NAD/FAD-utilizing prot 97.9 0.00012 2.7E-09 67.2 10.2 34 6-39 27-60 (679)
332 PLN02529 lysine-specific histo 97.9 2.1E-05 4.7E-10 78.5 5.9 42 6-47 159-200 (738)
333 PLN02852 ferredoxin-NADP+ redu 97.9 1.8E-05 4E-10 75.5 5.1 35 185-219 25-61 (491)
334 PTZ00363 rab-GDP dissociation 97.8 1.9E-05 4.1E-10 74.7 4.9 42 7-48 4-45 (443)
335 COG1231 Monoamine oxidase [Ami 97.8 2.6E-05 5.6E-10 71.6 5.4 41 5-45 5-45 (450)
336 PF03486 HI0933_like: HI0933-l 97.8 2.5E-05 5.4E-10 73.1 5.2 142 188-332 2-167 (409)
337 PRK12770 putative glutamate sy 97.8 0.00017 3.7E-09 66.8 10.3 101 7-152 172-287 (352)
338 PRK15317 alkyl hydroperoxide r 97.8 0.00032 7E-09 68.5 12.4 100 7-154 351-452 (517)
339 TIGR00292 thiazole biosynthesi 97.8 0.00013 2.7E-09 64.0 8.4 35 185-219 20-54 (254)
340 TIGR01316 gltA glutamate synth 97.8 0.00019 4E-09 68.8 10.4 103 7-153 272-389 (449)
341 PRK09853 putative selenate red 97.7 6.8E-05 1.5E-09 76.9 7.2 36 184-219 537-572 (1019)
342 PRK05335 tRNA (uracil-5-)-meth 97.7 4.1E-05 9E-10 71.0 5.0 35 8-42 3-37 (436)
343 TIGR02732 zeta_caro_desat caro 97.7 4.4E-05 9.6E-10 73.5 5.1 37 9-45 1-37 (474)
344 PRK06847 hypothetical protein; 97.7 9.6E-05 2.1E-09 69.2 6.9 142 186-333 4-165 (375)
345 PLN02328 lysine-specific histo 97.7 6.6E-05 1.4E-09 75.5 5.8 40 7-46 238-277 (808)
346 PLN02487 zeta-carotene desatur 97.7 6.3E-05 1.4E-09 73.4 5.4 39 8-46 76-114 (569)
347 PF07992 Pyr_redox_2: Pyridine 97.6 2.1E-05 4.6E-10 66.6 1.8 32 188-219 1-32 (201)
348 PLN02661 Putative thiazole syn 97.6 0.00032 6.8E-09 63.6 9.0 40 180-219 86-126 (357)
349 KOG2852 Possible oxidoreductas 97.6 0.00036 7.7E-09 60.1 8.8 39 6-44 9-53 (380)
350 PLN02463 lycopene beta cyclase 97.6 0.00032 7E-09 66.7 9.6 136 186-332 28-170 (447)
351 COG2907 Predicted NAD/FAD-bind 97.6 6.6E-05 1.4E-09 66.3 4.4 43 4-47 5-47 (447)
352 PRK12831 putative oxidoreducta 97.6 0.00072 1.6E-08 65.0 11.9 34 7-40 281-314 (464)
353 PF13738 Pyr_redox_3: Pyridine 97.6 6.7E-05 1.5E-09 63.6 4.4 124 190-330 1-137 (203)
354 TIGR02462 pyranose_ox pyranose 97.6 7.5E-05 1.6E-09 72.2 5.0 40 8-47 1-40 (544)
355 PF00732 GMC_oxred_N: GMC oxid 97.6 6E-05 1.3E-09 68.1 4.2 34 8-41 1-35 (296)
356 KOG3855 Monooxygenase involved 97.6 0.0011 2.3E-08 60.2 11.5 39 6-44 35-79 (481)
357 PRK06834 hypothetical protein; 97.6 0.00018 3.9E-09 69.5 7.2 147 186-333 3-158 (488)
358 PLN02612 phytoene desaturase 97.6 0.00012 2.6E-09 72.1 5.8 38 7-44 93-130 (567)
359 PTZ00188 adrenodoxin reductase 97.5 9.9E-05 2.1E-09 69.7 4.8 35 185-219 38-73 (506)
360 TIGR03315 Se_ygfK putative sel 97.5 0.00015 3.3E-09 74.7 6.5 35 185-219 536-570 (1012)
361 PLN02172 flavin-containing mon 97.5 0.00033 7.2E-09 67.0 8.2 35 185-219 9-43 (461)
362 PRK11749 dihydropyrimidine deh 97.5 0.0011 2.4E-08 63.7 11.4 103 7-152 273-388 (457)
363 PLN02976 amine oxidase 97.5 0.00015 3.3E-09 76.0 5.7 43 6-48 692-734 (1713)
364 PF06100 Strep_67kDa_ant: Stre 97.5 0.0018 3.8E-08 60.8 12.0 39 7-45 2-44 (500)
365 PLN03000 amine oxidase 97.5 0.00017 3.6E-09 72.8 5.7 43 6-48 183-225 (881)
366 TIGR03143 AhpF_homolog putativ 97.5 0.0016 3.4E-08 64.2 12.2 34 7-40 143-176 (555)
367 PRK05192 tRNA uridine 5-carbox 97.4 0.00032 6.9E-09 68.3 6.9 33 187-219 5-37 (618)
368 PRK06567 putative bifunctional 97.4 0.00032 6.9E-09 71.4 7.1 36 184-219 381-416 (1028)
369 COG3075 GlpB Anaerobic glycero 97.4 0.0002 4.4E-09 62.8 4.5 34 7-40 2-35 (421)
370 PRK12775 putative trifunctiona 97.4 0.00023 4.9E-09 74.5 5.7 35 185-219 429-463 (1006)
371 KOG1276 Protoporphyrinogen oxi 97.4 0.00025 5.4E-09 64.5 4.9 41 7-47 11-53 (491)
372 PRK12778 putative bifunctional 97.4 0.0063 1.4E-07 62.4 15.6 34 7-40 570-604 (752)
373 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00039 8.5E-09 61.0 5.6 35 8-42 4-38 (439)
374 COG2072 TrkA Predicted flavopr 97.3 0.0012 2.7E-08 62.9 9.3 155 186-373 8-187 (443)
375 PRK02106 choline dehydrogenase 97.3 0.00027 5.9E-09 69.7 5.0 34 7-40 5-39 (560)
376 TIGR01372 soxA sarcosine oxida 97.3 0.0018 3.9E-08 68.2 10.9 94 7-153 317-413 (985)
377 PF13454 NAD_binding_9: FAD-NA 97.3 0.00062 1.3E-08 55.0 5.8 30 190-219 1-35 (156)
378 TIGR01318 gltD_gamma_fam gluta 97.3 0.019 4E-07 55.4 16.9 34 7-40 282-316 (467)
379 PRK12810 gltD glutamate syntha 97.3 0.0032 7E-08 60.8 11.7 111 7-152 281-401 (471)
380 TIGR01789 lycopene_cycl lycope 97.3 0.0013 2.9E-08 61.2 8.8 32 188-219 1-34 (370)
381 PRK01438 murD UDP-N-acetylmura 97.2 0.00053 1.2E-08 66.4 6.1 35 185-219 15-49 (480)
382 PRK08773 2-octaprenyl-3-methyl 97.2 0.0006 1.3E-08 64.3 6.3 34 186-219 6-39 (392)
383 KOG1399 Flavin-containing mono 97.2 0.0025 5.4E-08 60.2 10.2 34 186-219 6-39 (448)
384 TIGR00136 gidA glucose-inhibit 97.2 0.00098 2.1E-08 64.9 7.5 140 188-333 2-156 (617)
385 PRK12814 putative NADPH-depend 97.2 0.017 3.6E-07 58.2 16.5 34 7-40 323-357 (652)
386 COG3573 Predicted oxidoreducta 97.2 0.00061 1.3E-08 60.0 5.3 39 7-45 5-45 (552)
387 COG0654 UbiH 2-polyprenyl-6-me 97.2 0.00044 9.5E-09 65.0 4.9 145 186-331 2-162 (387)
388 PRK01438 murD UDP-N-acetylmura 97.2 0.0013 2.9E-08 63.7 8.3 34 7-40 16-49 (480)
389 KOG1346 Programmed cell death 97.2 0.0014 3E-08 59.5 7.5 101 7-154 347-452 (659)
390 PRK09126 hypothetical protein; 97.2 0.0013 2.9E-08 61.9 8.1 33 187-219 4-36 (392)
391 PRK12809 putative oxidoreducta 97.2 0.0005 1.1E-08 68.8 5.2 35 185-219 309-343 (639)
392 KOG0399 Glutamate synthase [Am 97.2 0.00058 1.3E-08 69.0 5.4 98 185-332 1784-1883(2142)
393 PRK05868 hypothetical protein; 97.2 0.0017 3.7E-08 60.7 8.4 33 187-219 2-34 (372)
394 PRK05714 2-octaprenyl-3-methyl 97.2 0.0013 2.8E-08 62.3 7.6 33 187-219 3-35 (405)
395 PRK08163 salicylate hydroxylas 97.1 0.00061 1.3E-08 64.3 5.2 34 186-219 4-37 (396)
396 PRK07236 hypothetical protein; 97.1 0.00066 1.4E-08 63.8 5.2 35 185-219 5-39 (386)
397 PRK06184 hypothetical protein; 97.1 0.0012 2.6E-08 64.4 7.1 34 186-219 3-36 (502)
398 COG0445 GidA Flavin-dependent 97.1 0.00049 1.1E-08 64.7 3.9 33 187-219 5-37 (621)
399 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.00075 1.6E-08 63.4 5.2 32 188-219 1-32 (385)
400 PRK09897 hypothetical protein; 97.1 0.0037 8.1E-08 60.7 9.9 33 187-219 2-36 (534)
401 PRK06753 hypothetical protein; 97.1 0.0017 3.7E-08 60.7 7.4 32 188-219 2-33 (373)
402 TIGR01790 carotene-cycl lycope 97.0 0.0018 3.9E-08 61.0 7.4 32 188-219 1-32 (388)
403 COG2303 BetA Choline dehydroge 97.0 0.00068 1.5E-08 66.3 4.6 39 2-40 2-40 (542)
404 PF01266 DAO: FAD dependent ox 97.0 0.00089 1.9E-08 62.0 5.2 32 188-219 1-32 (358)
405 PRK12769 putative oxidoreducta 97.0 0.031 6.7E-07 56.4 16.4 102 7-152 468-585 (654)
406 TIGR01317 GOGAT_sm_gam glutama 97.0 0.00097 2.1E-08 64.5 5.3 35 185-219 142-176 (485)
407 PF12831 FAD_oxidored: FAD dep 96.9 0.00063 1.4E-08 64.7 3.4 32 188-219 1-32 (428)
408 PRK07588 hypothetical protein; 96.9 0.0017 3.6E-08 61.3 6.1 32 188-219 2-33 (391)
409 PF05834 Lycopene_cycl: Lycope 96.9 0.002 4.2E-08 60.3 6.3 134 188-332 1-143 (374)
410 TIGR02032 GG-red-SF geranylger 96.9 0.0014 3.1E-08 58.9 5.2 32 188-219 2-33 (295)
411 PRK08244 hypothetical protein; 96.9 0.0022 4.7E-08 62.5 6.5 33 187-219 3-35 (493)
412 PRK10157 putative oxidoreducta 96.9 0.0014 3.1E-08 62.4 5.0 33 187-219 6-38 (428)
413 PRK07608 ubiquinone biosynthes 96.8 0.0019 4.1E-08 60.8 5.7 34 187-220 6-39 (388)
414 PRK07333 2-octaprenyl-6-methox 96.8 0.0024 5.2E-08 60.4 6.4 32 188-219 3-36 (403)
415 PF00743 FMO-like: Flavin-bind 96.8 0.0016 3.4E-08 63.5 5.1 34 186-219 1-34 (531)
416 TIGR01470 cysG_Nterm siroheme 96.8 0.0018 3.9E-08 54.7 4.9 36 184-219 7-42 (205)
417 KOG2755 Oxidoreductase [Genera 96.8 0.0018 3.9E-08 55.1 4.6 31 189-219 2-34 (334)
418 COG3486 IucD Lysine/ornithine 96.8 0.014 3E-07 53.3 10.4 138 8-155 188-344 (436)
419 KOG3923 D-aspartate oxidase [A 96.8 0.0027 5.9E-08 55.1 5.7 34 7-40 3-43 (342)
420 COG0493 GltD NADPH-dependent g 96.8 0.0012 2.5E-08 62.8 3.7 37 183-219 120-156 (457)
421 PRK08020 ubiF 2-octaprenyl-3-m 96.8 0.0028 6E-08 59.7 6.3 34 186-219 5-38 (391)
422 COG0492 TrxB Thioredoxin reduc 96.8 0.017 3.7E-07 52.0 10.8 98 7-153 143-240 (305)
423 PRK07045 putative monooxygenas 96.8 0.0043 9.2E-08 58.4 7.3 34 187-220 6-39 (388)
424 TIGR00275 flavoprotein, HI0933 96.7 0.0042 9.1E-08 58.6 7.2 30 190-219 1-30 (400)
425 PRK07190 hypothetical protein; 96.7 0.0042 9.1E-08 60.1 7.3 33 187-219 6-38 (487)
426 PLN02697 lycopene epsilon cycl 96.7 0.0039 8.4E-08 60.6 7.0 133 186-331 108-248 (529)
427 PLN02785 Protein HOTHEAD 96.7 0.002 4.3E-08 63.6 5.0 34 6-40 54-87 (587)
428 PRK08013 oxidoreductase; Provi 96.7 0.0029 6.3E-08 59.8 6.0 34 187-220 4-37 (400)
429 TIGR01810 betA choline dehydro 96.7 0.0015 3.2E-08 64.2 3.9 32 9-40 1-33 (532)
430 PLN00093 geranylgeranyl diphos 96.7 0.016 3.4E-07 55.6 10.5 34 186-219 39-72 (450)
431 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.0025 5.3E-08 59.9 5.0 32 188-219 1-33 (382)
432 PRK08849 2-octaprenyl-3-methyl 96.7 0.0053 1.2E-07 57.7 7.2 33 187-219 4-36 (384)
433 TIGR03219 salicylate_mono sali 96.6 0.0027 5.8E-08 60.4 5.0 32 188-219 2-34 (414)
434 KOG0405 Pyridine nucleotide-di 96.6 0.011 2.3E-07 52.7 8.0 103 7-155 189-291 (478)
435 KOG2311 NAD/FAD-utilizing prot 96.6 0.0022 4.7E-08 59.3 3.8 34 186-219 28-61 (679)
436 COG0644 FixC Dehydrogenases (f 96.6 0.0029 6.4E-08 59.6 4.8 139 187-331 4-152 (396)
437 PRK06718 precorrin-2 dehydroge 96.6 0.0047 1E-07 52.1 5.4 36 183-218 7-42 (202)
438 PRK11728 hydroxyglutarate oxid 96.5 0.015 3.2E-07 54.9 9.4 33 187-219 3-37 (393)
439 KOG4254 Phytoene desaturase [C 96.5 0.0024 5.1E-08 58.7 3.7 39 6-44 13-51 (561)
440 PRK08850 2-octaprenyl-6-methox 96.5 0.0055 1.2E-07 58.0 6.4 33 186-218 4-36 (405)
441 PRK06126 hypothetical protein; 96.5 0.0064 1.4E-07 60.0 7.0 34 186-219 7-40 (545)
442 PRK05329 anaerobic glycerol-3- 96.5 0.02 4.3E-07 54.1 9.8 92 11-147 219-316 (422)
443 PRK10015 oxidoreductase; Provi 96.5 0.0028 6E-08 60.4 4.1 33 187-219 6-38 (429)
444 PRK05562 precorrin-2 dehydroge 96.4 0.0065 1.4E-07 51.6 5.5 35 184-218 23-57 (223)
445 PRK07494 2-octaprenyl-6-methox 96.4 0.0094 2E-07 56.1 6.9 34 186-219 7-40 (388)
446 PRK12771 putative glutamate sy 96.3 0.0037 8E-08 61.8 4.2 36 184-219 135-170 (564)
447 PRK06617 2-octaprenyl-6-methox 96.3 0.0058 1.3E-07 57.2 5.3 32 188-219 3-34 (374)
448 KOG3851 Sulfide:quinone oxidor 96.3 0.012 2.6E-07 51.8 6.6 33 302-334 114-148 (446)
449 KOG4716 Thioredoxin reductase 96.3 0.0096 2.1E-07 52.8 6.0 100 8-147 199-298 (503)
450 TIGR02028 ChlP geranylgeranyl 96.3 0.012 2.6E-07 55.5 7.2 32 188-219 2-33 (398)
451 COG1251 NirB NAD(P)H-nitrite r 96.3 0.0086 1.9E-07 58.6 6.2 101 7-153 145-245 (793)
452 PRK07364 2-octaprenyl-6-methox 96.3 0.0095 2.1E-07 56.6 6.6 34 186-219 18-51 (415)
453 PRK06183 mhpA 3-(3-hydroxyphen 96.3 0.0093 2E-07 58.7 6.6 34 186-219 10-43 (538)
454 PRK06475 salicylate hydroxylas 96.3 0.0062 1.3E-07 57.6 5.1 33 187-219 3-35 (400)
455 COG1148 HdrA Heterodisulfide r 96.2 0.0098 2.1E-07 55.3 6.0 34 186-219 124-157 (622)
456 PF04820 Trp_halogenase: Trypt 96.2 0.011 2.4E-07 56.6 6.5 52 282-333 155-213 (454)
457 PRK13984 putative oxidoreducta 96.2 0.14 3.1E-06 51.2 14.6 31 7-37 418-454 (604)
458 TIGR03862 flavo_PP4765 unchara 96.1 0.03 6.5E-07 51.9 8.7 62 78-152 83-144 (376)
459 PRK08401 L-aspartate oxidase; 96.1 0.066 1.4E-06 51.7 11.4 33 187-219 2-34 (466)
460 COG4529 Uncharacterized protei 96.1 0.031 6.8E-07 52.3 8.6 33 187-219 2-37 (474)
461 PLN02927 antheraxanthin epoxid 96.1 0.016 3.4E-07 57.7 7.2 36 184-219 79-114 (668)
462 TIGR02023 BchP-ChlP geranylger 96.0 0.018 4E-07 54.1 6.9 31 188-218 2-32 (388)
463 PF13450 NAD_binding_8: NAD(P) 96.0 0.0069 1.5E-07 41.1 2.9 29 191-219 1-29 (68)
464 TIGR01989 COQ6 Ubiquinone bios 95.9 0.01 2.2E-07 56.8 4.9 32 188-219 2-37 (437)
465 KOG1238 Glucose dehydrogenase/ 95.9 0.0087 1.9E-07 57.9 4.2 37 6-42 56-93 (623)
466 PF00996 GDI: GDP dissociation 95.9 0.01 2.2E-07 55.9 4.6 43 6-48 3-45 (438)
467 PRK05732 2-octaprenyl-6-methox 95.8 0.024 5.1E-07 53.5 6.8 33 186-218 3-38 (395)
468 PRK08132 FAD-dependent oxidore 95.7 0.02 4.3E-07 56.5 6.0 34 186-219 23-56 (547)
469 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.012 2.6E-07 47.5 3.6 32 9-40 1-32 (157)
470 TIGR03377 glycerol3P_GlpA glyc 95.7 0.088 1.9E-06 51.6 10.3 66 79-150 126-191 (516)
471 PRK08243 4-hydroxybenzoate 3-m 95.6 0.026 5.6E-07 53.2 6.3 34 186-219 2-35 (392)
472 KOG1800 Ferredoxin/adrenodoxin 95.6 0.029 6.3E-07 50.7 6.0 101 186-333 20-122 (468)
473 PRK06185 hypothetical protein; 95.6 0.019 4E-07 54.5 5.3 34 186-219 6-39 (407)
474 PF13241 NAD_binding_7: Putati 95.6 0.0095 2.1E-07 44.2 2.5 36 184-219 5-40 (103)
475 PF02737 3HCDH_N: 3-hydroxyacy 95.6 0.014 3E-07 48.4 3.7 32 9-40 1-32 (180)
476 PRK11445 putative oxidoreducta 95.6 0.013 2.8E-07 54.4 3.9 31 188-219 3-33 (351)
477 TIGR02360 pbenz_hydroxyl 4-hyd 95.5 0.028 6E-07 52.9 5.9 35 186-220 2-36 (390)
478 COG0569 TrkA K+ transport syst 95.5 0.021 4.5E-07 49.1 4.5 33 8-40 1-33 (225)
479 PF02558 ApbA: Ketopantoate re 95.4 0.015 3.2E-07 46.6 3.1 72 189-327 1-75 (151)
480 PRK14106 murD UDP-N-acetylmura 95.4 0.024 5.1E-07 54.6 5.0 83 183-336 2-85 (450)
481 PRK05335 tRNA (uracil-5-)-meth 95.3 0.015 3.4E-07 54.3 3.5 34 187-220 3-36 (436)
482 KOG2614 Kynurenine 3-monooxyge 95.3 0.034 7.4E-07 50.9 5.4 34 186-219 2-35 (420)
483 PF13241 NAD_binding_7: Putati 95.2 0.019 4.2E-07 42.6 3.1 35 6-40 6-40 (103)
484 PRK07066 3-hydroxybutyryl-CoA 95.1 0.037 7.9E-07 50.2 5.2 34 7-40 7-40 (321)
485 TIGR01470 cysG_Nterm siroheme 95.1 0.041 9E-07 46.5 5.0 34 7-40 9-42 (205)
486 PRK06719 precorrin-2 dehydroge 95.1 0.041 8.8E-07 44.3 4.7 34 6-39 12-45 (157)
487 PRK06996 hypothetical protein; 95.0 0.027 5.9E-07 53.2 4.2 34 186-219 11-48 (398)
488 COG1635 THI4 Ribulose 1,5-bisp 95.0 0.03 6.6E-07 46.8 3.9 38 182-219 26-63 (262)
489 TIGR00137 gid_trmFO tRNA:m(5)U 95.0 0.022 4.8E-07 53.5 3.4 33 188-220 2-34 (433)
490 COG3380 Predicted NAD/FAD-depe 94.9 0.073 1.6E-06 46.0 6.0 32 188-219 3-34 (331)
491 PRK06249 2-dehydropantoate 2-r 94.9 0.078 1.7E-06 48.3 6.8 100 183-351 2-103 (313)
492 TIGR03197 MnmC_Cterm tRNA U-34 94.8 0.074 1.6E-06 49.9 6.7 62 78-152 132-193 (381)
493 COG3634 AhpF Alkyl hydroperoxi 94.8 0.31 6.8E-06 43.7 9.8 105 7-158 354-459 (520)
494 PRK02705 murD UDP-N-acetylmura 94.8 0.033 7.1E-07 53.7 4.2 33 9-41 2-34 (459)
495 PRK08255 salicylyl-CoA 5-hydro 94.8 0.03 6.5E-07 57.5 4.0 32 188-219 2-35 (765)
496 TIGR00551 nadB L-aspartate oxi 94.7 0.32 6.9E-06 47.3 10.8 32 187-219 3-34 (488)
497 PRK06719 precorrin-2 dehydroge 94.7 0.035 7.5E-07 44.8 3.5 35 183-217 10-44 (157)
498 PF03721 UDPG_MGDP_dh_N: UDP-g 94.6 0.035 7.6E-07 46.1 3.5 33 8-40 1-33 (185)
499 PF01593 Amino_oxidase: Flavin 94.6 0.034 7.3E-07 52.8 3.9 40 99-148 225-264 (450)
500 PRK07819 3-hydroxybutyryl-CoA 94.6 0.05 1.1E-06 48.7 4.7 33 8-40 6-38 (286)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=5e-47 Score=361.33 Aligned_cols=363 Identities=32% Similarity=0.520 Sum_probs=226.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc---------CCCCceeeccccccccCCCCCCCCCCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---------YSYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (395)
++|+|||||++||++|..|.+.|++++++|+++.+||+|+. ..|+.+.+|.++.++.++++|++.+++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 58999999999999999999999999999999999999973 368999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCC---CCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+..++.+|++.+++++++..+|+++++|+++++.++ .++|.|++.++ ++. .+-.+|.||+|||.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~---g~~--~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND---GKE--ETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT---TEE--EEEEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC---CeE--EEEEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998653 36899988653 222 5567899999999999999995
Q ss_pred --CCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH---H
Q 016088 156 --IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY---L 230 (395)
Q Consensus 156 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~---~ 230 (395)
++|++.| .|.++|+.+|.+.+.+++|+|+|||+|.||+|+|..|+..+.+|++..|++.|++|+.... .
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 9999999 9999999999999999999999999999999999999999999999999999999986521 1
Q ss_pred H----HHH----hhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecCc
Q 016088 231 G----LVL----LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGI 302 (395)
Q Consensus 231 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v 302 (395)
. .+. .+.+|..+...+....-...+ +...+++. .........+.+++.+...+..++|.++.+|
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-------p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I 302 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-------PKHRFFSQHPTINDELPNRIRSGRIKVKPDI 302 (531)
T ss_dssp ----------------------------------------------------------------------------EE-E
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccc-------ccccccccccccccccccccccccccccccc
Confidence 1 111 111222222111110000000 12222331 1223345678899999999999999998889
Q ss_pred eEEeCCeEEecCCcEE-eCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcc-c--CCCCeEEEecccc--c-cc
Q 016088 303 ESIRGNEVIFENGHSH-HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHW-K--GKNGLYCVGLSRK--G-LY 375 (395)
Q Consensus 303 ~~~~~~~v~~~~g~~~-~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~vya~Gd~~~--~-~~ 375 (395)
.++++++|.++||+.+ ++|.||+||||+.+.|.+.++. ....++.+. -+.... . ..|+|.++|-+.. . ..
T Consensus 303 ~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~--~~~~~~~~~-LYk~vfp~~~~~ptLafIG~~~~~g~~fp 379 (531)
T PF00743_consen 303 KRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESL--IKVDDNRVR-LYKHVFPPNLDHPTLAFIGLVQPFGSIFP 379 (531)
T ss_dssp EEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTT--T-S-SSSSS-EETTTEETETTSTTEEESS-SBSSS-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc--ccccccccc-ccccccccccccccccccccccccccccc
Confidence 9999999999999876 6999999999999997665543 222222221 111222 1 3589999998743 2 23
Q ss_pred CccHHHHHHHHHhhccc
Q 016088 376 GAAADAQNIADHINSIL 392 (395)
Q Consensus 376 ~a~~~a~~~a~~i~~~l 392 (395)
.+..||+++|+-+.+.+
T Consensus 380 ~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 380 IFELQARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccc
Confidence 78999999999888765
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=9.1e-40 Score=307.99 Aligned_cols=311 Identities=24% Similarity=0.411 Sum_probs=241.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--------------------CCCCceeeccccccccCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------------YSYDRLRLHLAKQFCQLP 66 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--------------------~~~~~l~~~~~~~~~~~~ 66 (395)
.++|+|||||++||++|..|++.|++++++|+.+.+||+|.. .+|+.++++.++..+.++
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 589999999999999999999999999999999999999964 247888899999999988
Q ss_pred CCCCCCC-------CCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeC
Q 016088 67 HLPFPSS-------YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGR 139 (395)
Q Consensus 67 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 139 (395)
.+|+... .+.|+++.++.+|++++++++++..+|+++++|+++++.+ +.|.|++.++.+ .. .+..+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~--~~--~~~~~d 163 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG--FS--KDEIFD 163 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC--ce--EEEEcC
Confidence 8876542 3568999999999999999999997779999999999865 789999875421 11 457899
Q ss_pred EEEEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 140 FLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 140 ~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+||+|||.++.|+.|.++|.+.+ .|..+|+..+.....+++|+|+|||+|.+|+|+|..|...+.+|+++.|++
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999999999999999999999 899999999999999999999999999999999999999999999999976
Q ss_pred CcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEe
Q 016088 220 VHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVL 299 (395)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (395)
... + + .. + .+...++.+.
T Consensus 238 ~~~-~------------~---------------------~~--~--------------------------~~~~~~v~~~ 255 (461)
T PLN02172 238 ESD-T------------Y---------------------EK--L--------------------------PVPQNNLWMH 255 (461)
T ss_pred ccc-c------------c---------------------cc--C--------------------------cCCCCceEEC
Confidence 200 0 0 00 0 0011223232
Q ss_pred cCceEEeC-CeEEecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcc-cC-CCCeEEEeccccc--c
Q 016088 300 PGIESIRG-NEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHW-KG-KNGLYCVGLSRKG--L 374 (395)
Q Consensus 300 ~~v~~~~~-~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~vya~Gd~~~~--~ 374 (395)
..|..+.+ +.|+++||+.+++|.||+||||+++++.+. ..+.+..++..+.--+.... .. .|+|+++|-...+ .
T Consensus 256 ~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~-~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f 334 (461)
T PLN02172 256 SEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLE-TNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQF 334 (461)
T ss_pred CcccceecCCeEEECCCCCccCCEEEECCcCCccccccC-cccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCc
Confidence 22444433 358999999999999999999999996543 22122111122111111112 23 3899999987544 3
Q ss_pred cCccHHHHHHHHHhhccc
Q 016088 375 YGAAADAQNIADHINSIL 392 (395)
Q Consensus 375 ~~a~~~a~~~a~~i~~~l 392 (395)
..+..||+++|.-+.+++
T Consensus 335 ~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 335 VMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred hhHHHHHHHHHHHHcCCC
Confidence 388889999999887765
No 3
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=292.36 Aligned_cols=355 Identities=29% Similarity=0.452 Sum_probs=261.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCC-eEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~-v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
.++||+|||||++|+++|..|.++|.+ ++|+||++.+||+|+.++|+++.++.++..+.++..|++ +...++...++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 468999999999999999999999998 999999999999999999999999999999999999987 445566667789
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
+|+..+++++++..++.+++.|..+.++++++.|+|++.++.. .+++||+||+|||.++.|+.|.++|.+.|
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f-- 157 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT------GELTADFVVVATGHLSEPYIPDFAGLDEF-- 157 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe------eeEecCEEEEeecCCCCCCCCCCCCccCC--
Confidence 9999999999999999999999999999988899999998742 33889999999999999999999999999
Q ss_pred CCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhH----HHHHHHhhcCCh
Q 016088 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV----YLGLVLLRYVPC 240 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~----~~~~~~~~~~~~ 240 (395)
.|.++|+.++.+..++++|+|+|||+|.||++++..|++.|++||++.|++.+..|.... .....+...++.
T Consensus 158 ----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (443)
T COG2072 158 ----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPA 233 (443)
T ss_pred ----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhhCcc
Confidence 999999999999999999999999999999999999999999999999999999886652 222333332332
Q ss_pred hhHHHHHHHHHHHH--hcchh-------------hcCCCCCCCCcchhh------ccCCCceeeCchhhhhhcCCcEEEe
Q 016088 241 GGVDTLMVMLSRLV--YGDLS-------------KYGIHKPREGPFFMK------AAYGKYPVIDAGTCEKIKSGQIQVL 299 (395)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (395)
.............. +.... ...+........... ............+........+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~ 313 (443)
T COG2072 234 GWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGDVEVV 313 (443)
T ss_pred ceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhccccee
Confidence 22211111111100 00000 000000000000000 0111123334455566677788888
Q ss_pred cC-ceEEeCCeEEecCCcEEeCcEEEEccCCCCCcccccc-CCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc
Q 016088 300 PG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLK-GDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 373 (395)
Q Consensus 300 ~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 373 (395)
+. +..+....+...++.+++.|.++.+||+..+.-.... ......-.......+......+.||+|.++.....
T Consensus 314 ~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 314 TEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred eccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccccccceeccccccCCCceEEecCccCC
Confidence 87 7777777787777777999999999999884211111 11001111122333334555788999999887543
No 4
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=7.5e-37 Score=283.77 Aligned_cols=303 Identities=18% Similarity=0.258 Sum_probs=216.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeeccccccc-cCCCCC--CCCCCCC-CCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPHLP--FPSSYPM-FVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~-~~~~~ 81 (395)
+||++|||+||+|..+|..+++.|.+++++|+...+||++. ..+.|...+......+ .+.... +-..... -.+..
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~ 83 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFE 83 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHH
Confidence 69999999999999999999999999999999988888775 4444443332222211 111000 0000000 12222
Q ss_pred HHHH-----------HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 82 QFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 82 ~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++.+ .+....+..++++ +..+ ..=+ +.+. |....... ++++++++|+||| |+
T Consensus 84 ~~~~~k~~v~~~~~~~~~~l~~~~~V~v--i~G~-a~f~----~~~~--v~V~~~~~------~~~~a~~iiIATG--S~ 146 (454)
T COG1249 84 KLLARKDKVVRLLTGGVEGLLKKNGVDV--IRGE-ARFV----DPHT--VEVTGEDK------ETITADNIIIATG--SR 146 (454)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhCCCEE--EEEE-EEEC----CCCE--EEEcCCCc------eEEEeCEEEEcCC--CC
Confidence 3332 3333444445553 2221 1111 1233 33333222 8999999999999 99
Q ss_pred CCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHH
Q 016088 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (395)
|..|++++.+.. .++.+.+......+ +++++|||+|.+|+|+|..++++|.+||++.|.+ .++|..+.++
T Consensus 147 p~~~~~~~~~~~--------~~~~s~~~l~~~~l-P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei 216 (454)
T COG1249 147 PRIPPGPGIDGA--------RILDSSDALFLLEL-PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEI 216 (454)
T ss_pred CcCCCCCCCCCC--------eEEechhhcccccC-CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHH
Confidence 999999888864 35555554444444 9999999999999999999999999999999999 8888888776
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN 308 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~ 308 (395)
+..+ .+.+++++++++.+ ++.++.+
T Consensus 217 ~~~~-----------------------------------------------------~~~l~~~gv~i~~~~~v~~~~~~ 243 (454)
T COG1249 217 SKEL-----------------------------------------------------TKQLEKGGVKILLNTKVTAVEKK 243 (454)
T ss_pred HHHH-----------------------------------------------------HHHHHhCCeEEEccceEEEEEec
Confidence 6655 34466678888888 6677654
Q ss_pred ----eEEecCCc--EEeCcEEEEccCCCCCccccccCCCCc-cCCCCCCCCCCCCcccCCCCeEEEeccccccc---Ccc
Q 016088 309 ----EVIFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAA 378 (395)
Q Consensus 309 ----~v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 378 (395)
.+.+++|+ .+++|.|++|+|++||++.|..+..++ .+++|++.|| +.++|+.|+|||+||++++++ .|.
T Consensus 244 ~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~ 322 (454)
T COG1249 244 DDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAM 322 (454)
T ss_pred CCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHH
Confidence 37777776 688999999999999998775444344 5788999999 788888999999999988764 999
Q ss_pred HHHHHHHHHhhc
Q 016088 379 ADAQNIADHINS 390 (395)
Q Consensus 379 ~~a~~~a~~i~~ 390 (395)
.||+.++++|.+
T Consensus 323 ~eg~iaa~~i~g 334 (454)
T COG1249 323 AEGRIAAENIAG 334 (454)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.1e-36 Score=272.49 Aligned_cols=284 Identities=24% Similarity=0.349 Sum_probs=211.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
|||+|||||++|+++|..|++.|.+|+|||+.+ .||.|.... ....++.+ +...+..++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 689999999999999999999999999999876 566544210 00011111 1224556889999
Q ss_pred HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCCC
Q 016088 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSAT 167 (395)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~~ 167 (395)
.+.++++++++ ++ ++|+++++++ +.|.+.+.++ ..++||+||+||| +.|+.|.++|.+.+
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~--------~~~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG--------KEYTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC--------CEEEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998775 66 8999998865 6787877653 6899999999999 67888888887765
Q ss_pred CCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHH
Q 016088 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLM 247 (395)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
.+...+..........++++++|||+|.+|+|+|..|++.+.+|+++.|.+... +
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-~----------------------- 178 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-A----------------------- 178 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-c-----------------------
Confidence 444444444444444568999999999999999999999999999999987211 0
Q ss_pred HHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCC-cEEEecC--ceEEeCCe----EEec---CC--
Q 016088 248 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSG-QIQVLPG--IESIRGNE----VIFE---NG-- 315 (395)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--v~~~~~~~----v~~~---~g-- 315 (395)
.....+.+++. +++++.+ +.+++.+. +.+. +|
T Consensus 179 ------------------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~ 222 (300)
T TIGR01292 179 ------------------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEE 222 (300)
T ss_pred ------------------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCce
Confidence 00112334444 7888776 77776542 4443 23
Q ss_pred cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccc-c---ccCccHHHHHHHHHhhcc
Q 016088 316 HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK-G---LYGAAADAQNIADHINSI 391 (395)
Q Consensus 316 ~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~-~---~~~a~~~a~~~a~~i~~~ 391 (395)
.++++|.|++|+|++|+. .++... ...+++|++.+| ++++++.||||++|||++ . ...|..||+.+|.+|.++
T Consensus 223 ~~i~~D~vi~a~G~~~~~-~~l~~~-~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 223 EELKVDGVFIAIGHEPNT-ELLKGL-LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EEEEccEEEEeeCCCCCh-HHHHHh-heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhh
Confidence 568999999999999998 454443 345678999998 457789999999999986 2 348999999999999876
Q ss_pred c
Q 016088 392 L 392 (395)
Q Consensus 392 l 392 (395)
|
T Consensus 300 ~ 300 (300)
T TIGR01292 300 L 300 (300)
T ss_pred C
Confidence 5
No 6
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-35 Score=260.09 Aligned_cols=286 Identities=23% Similarity=0.349 Sum_probs=221.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.+||+||||||+||+||.++++.+++++||+.....||..... . ...++| .++.-.+..++.+.
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~------~-------~venyp---g~~~~~~g~~L~~~ 66 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT------T-------DVENYP---GFPGGILGPELMEQ 66 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc------e-------eecCCC---CCccCCchHHHHHH
Confidence 6899999999999999999999999955544444444321110 0 111111 11223467889999
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
+.+++..++++. ....|.+++... ..|.|.+.++ +++|++||+||| ..++.|.+++..++
T Consensus 67 ~~~~a~~~~~~~---~~~~v~~v~~~~--~~F~v~t~~~---------~~~ak~vIiAtG--~~~~~~~~~~e~e~---- 126 (305)
T COG0492 67 MKEQAEKFGVEI---VEDEVEKVELEG--GPFKVKTDKG---------TYEAKAVIIATG--AGARKLGVPGEEEF---- 126 (305)
T ss_pred HHHHHhhcCeEE---EEEEEEEEeecC--ceEEEEECCC---------eEEEeEEEECcC--CcccCCCCCcchhh----
Confidence 999999988774 447777777654 2889998874 499999999999 78888888877788
Q ss_pred CCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHH
Q 016088 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTL 246 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 246 (395)
.|..++++..++. .+++|+++|||+|.+|+|.|.+|.+.+.+||+++|++... +
T Consensus 127 --~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-a---------------------- 180 (305)
T COG0492 127 --EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-A---------------------- 180 (305)
T ss_pred --cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-c----------------------
Confidence 8888899989988 8889999999999999999999999999999999998321 1
Q ss_pred HHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC-CcEEEecC--ceEEeC---CeEEecCCc----
Q 016088 247 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRG---NEVIFENGH---- 316 (395)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--v~~~~~---~~v~~~~g~---- 316 (395)
.+...+.+.+ .+++++.+ +.++.. ++|.+++..
T Consensus 181 -------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~ 223 (305)
T COG0492 181 -------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEK 223 (305)
T ss_pred -------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceE
Confidence 1111233333 37888887 888888 468887642
Q ss_pred EEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc----ccCccHHHHHHHHHhhccc
Q 016088 317 SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHINSIL 392 (395)
Q Consensus 317 ~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~i~~~l 392 (395)
.+++|-+++++|..|++ .++... ...+++|+++++ +.++||.|+|||+||++.. +.+|..++..+|.++.++|
T Consensus 224 ~~~~~gvf~~iG~~p~~-~~~~~~-~~~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 224 ELPVDGVFIAIGHLPNT-ELLKGL-GVLDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred EEEeceEEEecCCCCch-HHHhhc-cccCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHh
Confidence 67899999999999998 666666 347899999999 4589999999999999765 4489999999999998887
Q ss_pred CC
Q 016088 393 SP 394 (395)
Q Consensus 393 ~~ 394 (395)
.+
T Consensus 301 ~~ 302 (305)
T COG0492 301 ES 302 (305)
T ss_pred hh
Confidence 65
No 7
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=9.3e-35 Score=265.26 Aligned_cols=291 Identities=17% Similarity=0.264 Sum_probs=215.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+||+||||||+|+++|..|+++|+++++||+. ..||.+.... ..+.++. .+...+..++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHHHH
Confidence 4789999999999999999999999999999954 5666543210 0111111 122345678888
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
++.+.+..++... +.+ +|++++..+ +.|.+.... ..++||+||+||| +.|+.|+++|.+.+
T Consensus 68 ~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~---------~~~~~d~vilAtG--~~~~~~~i~g~~~~--- 128 (321)
T PRK10262 68 RMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS---------GEYTCDALIIATG--ASARYLGLPSEEAF--- 128 (321)
T ss_pred HHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC---------CEEEECEEEECCC--CCCCCCCCCCHHHc---
Confidence 9998888887653 443 577777654 677776532 5689999999999 77888999997766
Q ss_pred CCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHH
Q 016088 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDT 245 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 245 (395)
.+..++.+...+.....+++++|||+|.+|+|+|..|++.+.+|+++.|++.. .. . ..
T Consensus 129 ---~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~-~~-~-~~---------------- 186 (321)
T PRK10262 129 ---KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF-RA-E-KI---------------- 186 (321)
T ss_pred ---CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc-CC-C-HH----------------
Confidence 55566666666655567999999999999999999999999999999998731 11 0 00
Q ss_pred HHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC-----eEEecCC---
Q 016088 246 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----EVIFENG--- 315 (395)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~-----~v~~~~g--- 315 (395)
....+.+.+++.+|+++++ +.+++.+ ++.+.++
T Consensus 187 -------------------------------------~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~ 229 (321)
T PRK10262 187 -------------------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS 229 (321)
T ss_pred -------------------------------------HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCC
Confidence 0011245567788999987 8888765 3666543
Q ss_pred ---cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCC----CCcccCCCCeEEEeccccc----ccCccHHHHHH
Q 016088 316 ---HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSY----PNHWKGKNGLYCVGLSRKG----LYGAAADAQNI 384 (395)
Q Consensus 316 ---~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~ 384 (395)
+++++|.|++++|++||.. +.... +..++|++.+|. ++++|+.|+|||+|||++. +..|..+|..+
T Consensus 230 ~~~~~i~~D~vv~a~G~~p~~~-l~~~~--l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~A 306 (321)
T PRK10262 230 DNIESLDVAGLFVAIGHSPNTA-IFEGQ--LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 306 (321)
T ss_pred CeEEEEECCEEEEEeCCccChh-Hhhcc--ccccCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHH
Confidence 3689999999999999984 44432 333468888874 2578999999999999854 34899999999
Q ss_pred HHHhhcccCC
Q 016088 385 ADHINSILSP 394 (395)
Q Consensus 385 a~~i~~~l~~ 394 (395)
|..|.++|.+
T Consensus 307 a~~~~~~l~~ 316 (321)
T PRK10262 307 ALDAERYLDG 316 (321)
T ss_pred HHHHHHHHHh
Confidence 9999988743
No 8
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-35 Score=270.10 Aligned_cols=306 Identities=31% Similarity=0.474 Sum_probs=236.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccC---------CCCceeeccccccccCCCCCCCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (395)
..+|+|||||+|||++|+.|.++|++++++||.+++||+|... .|+.++++.++.++.++++|++...+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 5799999999999999999999999999999999999999865 4999999999999999999999986655
Q ss_pred -CCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCC
Q 016088 78 -VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (395)
Q Consensus 78 -~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~ 156 (395)
++..++.+||+++++++++..+|+++++|..++...+ ++|.|.+.++.+. . ...-+|.||+|||.+..|+.|.+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~--~--~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ--I--EEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc--e--eEEEeeEEEEcccCcCCCCCCcC
Confidence 8888999999999999999998999999999987653 7999999887431 2 57789999999999867999999
Q ss_pred CC--ccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC-CcccchhhHHHHHH
Q 016088 157 RG--LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP-VHVLSREMVYLGLV 233 (395)
Q Consensus 157 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~-~~~~p~~~~~~~~~ 233 (395)
+| .+.| .|.++|+.+|...+.+.+|+|+|||.|.||+|++..++..+.+|++..+++ ....|
T Consensus 161 ~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~--------- 225 (448)
T KOG1399|consen 161 PGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEP--------- 225 (448)
T ss_pred CCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccc---------
Confidence 88 6789 999999999999999999999999999999999999999999998886520 00000
Q ss_pred HhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecCceEEeCCeEEe-
Q 016088 234 LLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIF- 312 (395)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~v~~- 312 (395)
.. ..-.++..+..|..+++++..+
T Consensus 226 ------------------------------------------------------~~-~~~~~~~~~~~i~~~~e~~~~~~ 250 (448)
T KOG1399|consen 226 ------------------------------------------------------PE-ILGENLWQVPSIKSFTEDGSVFE 250 (448)
T ss_pred ------------------------------------------------------cc-eeecceEEccccccccCcceEEE
Confidence 00 1112333344477778888555
Q ss_pred cCCcEEeCcEEEEccCCCCCccccccCCCCcc-CCCCCCCCCCCCcccCCCCeEEEe-----ccc--ccccCccHHHHHH
Q 016088 313 ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSML-NDDGIPKQSYPNHWKGKNGLYCVG-----LSR--KGLYGAAADAQNI 384 (395)
Q Consensus 313 ~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~vya~G-----d~~--~~~~~a~~~a~~~ 384 (395)
.++....+|.||+||||....+.+.....+.. ++.-.+. .....|..++-| .-. ........|++.+
T Consensus 251 ~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl-----~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~ 325 (448)
T KOG1399|consen 251 KGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPL-----YKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWV 325 (448)
T ss_pred cCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccch-----heeccchhhCccccccccCeeeEeecceehhhhhh
Confidence 45566689999999999998865544332111 2221111 112223333333 222 2233778888888
Q ss_pred HHHhhccc
Q 016088 385 ADHINSIL 392 (395)
Q Consensus 385 a~~i~~~l 392 (395)
++-+.+..
T Consensus 326 ~~v~~G~~ 333 (448)
T KOG1399|consen 326 AAVLEGRL 333 (448)
T ss_pred HhhhcCCC
Confidence 87776653
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=5.7e-35 Score=279.73 Aligned_cols=304 Identities=16% Similarity=0.177 Sum_probs=204.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEec---------CCCCCcccc-cCCCCceeecccccccc----CCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER---------ENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPS 72 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~---------~~~~gg~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~ 72 (395)
+|||+||||||+|+.+|..++++|.+|+|||+ ...+||+|. ..++|...+......+. ...+....
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 68999999999999999999999999999996 356889874 34454333211111100 00000100
Q ss_pred CCCCCCCHHHHHHH-----------HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEE
Q 016088 73 SYPMFVSRAQFIEY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (395)
Q Consensus 73 ~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (395)
.........++.+. ++...+..+++ ....++..++. ..+.|...++.. ..++||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~----~~v~V~~~~g~~------~~~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGP----NEVEVTQLDGTK------LRYTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecC----CEEEEEeCCCcE------EEEEcCEE
Confidence 00001222333322 23334444555 34445544442 456676655421 57999999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCc
Q 016088 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (395)
Q Consensus 142 VlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~ 221 (395)
|+||| ++|..|+++|.+.. .++.+....... +++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~l~~~-~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALSLEEL-PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhhhhhc-CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 88998888876432 122222222222 7899999999999999999999999999999987 3
Q ss_pred ccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC
Q 016088 222 VLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG 301 (395)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (395)
.+|..+.++... +.+.+++.+|+++.+
T Consensus 238 ~l~~~d~~~~~~-----------------------------------------------------l~~~l~~~GI~i~~~ 264 (499)
T PLN02507 238 PLRGFDDEMRAV-----------------------------------------------------VARNLEGRGINLHPR 264 (499)
T ss_pred cCcccCHHHHHH-----------------------------------------------------HHHHHHhCCCEEEeC
Confidence 444333322222 234466678888887
Q ss_pred --ceEEeC--Ce--EEecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc
Q 016088 302 --IESIRG--NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL 374 (395)
Q Consensus 302 --v~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 374 (395)
+++++. ++ +.+.+|+++++|.|++|+|++||...+ ++..+...+++|++.+| ++++|+.|||||+|||++..
T Consensus 265 ~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~ 343 (499)
T PLN02507 265 TNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRI 343 (499)
T ss_pred CEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCC
Confidence 777763 23 556678889999999999999999644 34443345778999999 67789999999999998764
Q ss_pred c---CccHHHHHHHHHhhcc
Q 016088 375 Y---GAAADAQNIADHINSI 391 (395)
Q Consensus 375 ~---~a~~~a~~~a~~i~~~ 391 (395)
. .|..||+.+++||.+.
T Consensus 344 ~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 344 NLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred ccHHHHHHHHHHHHHHHcCC
Confidence 3 8899999999999753
No 10
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2e-34 Score=278.20 Aligned_cols=285 Identities=19% Similarity=0.290 Sum_probs=218.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+||+|||||++|+++|..|+++|++++||++. +||.|.... .+..++ + .......++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---S-VPETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---C-CCCCCHHHHHH
Confidence 4689999999999999999999999999999864 788775320 011111 0 11356778999
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
++.+.+++++++. +.+++|+++...+ +.|.|.+.++ ..++||.||+||| +.|+.|+++|...+
T Consensus 271 ~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g--------~~i~a~~vViAtG--~~~r~~~ipG~~~~--- 333 (517)
T PRK15317 271 ALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG--------AVLKAKTVILATG--ARWRNMNVPGEDEY--- 333 (517)
T ss_pred HHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEcCEEEECCC--CCcCCCCCCCHHHh---
Confidence 9999999999776 8899999998865 6777877654 6789999999999 67888888887776
Q ss_pred CCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHH
Q 016088 166 ATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDT 245 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 245 (395)
.+..++++...+....++++++|||+|.+|+|+|..|+..+.+|+++.+.+. +.+.
T Consensus 334 ---~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~-l~~~-------------------- 389 (517)
T PRK15317 334 ---RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE-LKAD-------------------- 389 (517)
T ss_pred ---cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc-cccc--------------------
Confidence 5555555544454556789999999999999999999999999999998872 1100
Q ss_pred HHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC-CcEEEecC--ceEEeCC-----eEEecC---
Q 016088 246 LMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFEN--- 314 (395)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--v~~~~~~-----~v~~~~--- 314 (395)
..+.+.+.+ .+|+++.+ +.++..+ .+.+.+
T Consensus 390 ---------------------------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~ 430 (517)
T PRK15317 390 ---------------------------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTT 430 (517)
T ss_pred ---------------------------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCC
Confidence 001222332 57888887 7777665 255543
Q ss_pred C--cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc----ccCccHHHHHHHHHh
Q 016088 315 G--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADHI 388 (395)
Q Consensus 315 g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~i 388 (395)
| +++++|.|++|+|++||. .+++.. ...+++|++.+| +.++|+.|||||+||+++. +..|..+|..+|.++
T Consensus 431 g~~~~i~~D~v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~ 507 (517)
T PRK15317 431 GEEHHLELEGVFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA 507 (517)
T ss_pred CcEEEEEcCEEEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence 3 358999999999999998 455544 445778999998 5677999999999999875 459999999999999
Q ss_pred hccc
Q 016088 389 NSIL 392 (395)
Q Consensus 389 ~~~l 392 (395)
..+|
T Consensus 508 ~~~l 511 (517)
T PRK15317 508 FDYL 511 (517)
T ss_pred HHHH
Confidence 8876
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=7.6e-35 Score=278.85 Aligned_cols=307 Identities=15% Similarity=0.156 Sum_probs=206.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeecccc-ccccCCCCC-C-CCCCCCCCCHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK-QFCQLPHLP-F-PSSYPMFVSRA 81 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~ 81 (395)
.+|||+|||||++|+++|..|+++|.+|+|||+.+.+||+|.. .+.+...+.... ....+...+ + ........+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 3699999999999999999999999999999998889998753 333322111110 000000000 0 00001112333
Q ss_pred HHHH-----------HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 82 QFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 82 ~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++.+ ++...+++.++++ +.+ ++..++ .+.+.|...++.. ..++||+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDGEV------ETLTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC--CC
Confidence 3333 3334445556553 333 333332 2455666554321 5799999999999 78
Q ss_pred CCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHH
Q 016088 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (395)
|..|++++.... .++++........ .+++++|||+|.+|+|+|..+++.|.+|+++.+++ .++|..+.++
T Consensus 149 p~~p~~~~~~~~--------~v~~~~~~~~~~~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~ 218 (461)
T PRK05249 149 PYRPPDVDFDHP--------RIYDSDSILSLDH-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI 218 (461)
T ss_pred CCCCCCCCCCCC--------eEEcHHHhhchhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence 888876654432 3444443333332 47999999999999999999999999999999988 5555443332
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe--
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR-- 306 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~-- 306 (395)
... +.+.+++.+++++.+ +++++
T Consensus 219 ~~~-----------------------------------------------------l~~~l~~~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 219 SDA-----------------------------------------------------LSYHLRDSGVTIRHNEEVEKVEGG 245 (461)
T ss_pred HHH-----------------------------------------------------HHHHHHHcCCEEEECCEEEEEEEe
Confidence 222 234456678888877 77776
Q ss_pred CCe--EEecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---CccHH
Q 016088 307 GNE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAAD 380 (395)
Q Consensus 307 ~~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 380 (395)
+++ +.+++|+.+++|.|++|+|++||...+ +...+...+++|++.+| +.++|+.|+|||+|||++.+. .|..+
T Consensus 246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~~ 324 (461)
T PRK05249 246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMDQ 324 (461)
T ss_pred CCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHHH
Confidence 333 445688889999999999999998644 34443345678999999 677899999999999987543 79999
Q ss_pred HHHHHHHhhcc
Q 016088 381 AQNIADHINSI 391 (395)
Q Consensus 381 a~~~a~~i~~~ 391 (395)
|+.+|++|.+.
T Consensus 325 g~~aa~~i~g~ 335 (461)
T PRK05249 325 GRIAAQHAVGE 335 (461)
T ss_pred HHHHHHHHcCC
Confidence 99999999854
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=9.9e-35 Score=275.60 Aligned_cols=297 Identities=17% Similarity=0.208 Sum_probs=198.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeeccccccc----cCCCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (395)
+|||+||||||+|+++|..|+++|.+|+|||+. .+||+|. ..+.+...+......+ ....+.............
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999985 5888764 3333332111110000 000111100000001222
Q ss_pred HHH-----------HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 82 QFI-----------EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 82 ~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++. +.+...+++.++++ +.++.+. .+ ... |... + ..++||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~---~~--~~~--v~v~-~--------~~~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF---TK--DGT--VEVN-G--------RDYTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE---cc--CCE--EEEC-C--------EEEEeCEEEEecC--CC
Confidence 222 22334444556554 5554431 11 122 4442 2 6799999999999 88
Q ss_pred CCCC-CCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 151 PFTP-DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 151 p~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
|+.| +++|.+.. ..+..+..... .+++++|||+|.+|+|+|..|++.|.+||++.|++ .++|..+..
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~ 208 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM 208 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence 9888 78876421 12222222222 27899999999999999999999999999999987 444544333
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+... +.+.+++.+|+++.+ +++++.
T Consensus 209 ~~~~-----------------------------------------------------~~~~l~~~gI~i~~~~~v~~i~~ 235 (450)
T TIGR01421 209 ISET-----------------------------------------------------ITEEYEKEGINVHKLSKPVKVEK 235 (450)
T ss_pred HHHH-----------------------------------------------------HHHHHHHcCCEEEcCCEEEEEEE
Confidence 2222 234466678998887 777764
Q ss_pred C-----eEEecCC-cEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---Cc
Q 016088 308 N-----EVIFENG-HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GA 377 (395)
Q Consensus 308 ~-----~v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a 377 (395)
+ .+.+++| +.+++|.|++|+|++||...+ ++..+...+++|++.+| ++++|+.|||||+|||++.+. .|
T Consensus 236 ~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A 314 (450)
T TIGR01421 236 TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVA 314 (450)
T ss_pred eCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHH
Confidence 2 2566777 578999999999999998644 34443345788999999 567899999999999987643 88
Q ss_pred cHHHHHHHHHhhc
Q 016088 378 AADAQNIADHINS 390 (395)
Q Consensus 378 ~~~a~~~a~~i~~ 390 (395)
..+|+.+|++|..
T Consensus 315 ~~~g~~aa~~i~~ 327 (450)
T TIGR01421 315 IAAGRKLSERLFN 327 (450)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
No 13
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=3.3e-34 Score=276.31 Aligned_cols=287 Identities=20% Similarity=0.286 Sum_probs=213.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
...+||+||||||+|+++|..|++.|++|+||++ .+||.+.... .+..+. . .......++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTV-------------GIENLI---S-VPYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCc-------------Cccccc---c-cCCCCHHHHH
Confidence 3469999999999999999999999999999975 4777664310 000000 0 0123567888
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
+.+.+.++++++.+ +.+++|++++.++ +.+.+.+.++ ..++||++|+||| +.|+.|+++|...+
T Consensus 271 ~~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g--------~~i~~d~lIlAtG--a~~~~~~ipG~~~~-- 334 (515)
T TIGR03140 271 ANLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG--------EVLKAKSVIVATG--ARWRKLGVPGEKEY-- 334 (515)
T ss_pred HHHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC--CCcCCCCCCCHHHc--
Confidence 89988888888776 8899999998755 5677777654 6799999999999 67888888886555
Q ss_pred CCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHH
Q 016088 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVD 244 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 244 (395)
.+..++.+...+.....+++++|||+|.+|+|+|..|+..+.+|+++.+.+. +...
T Consensus 335 ----~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~-l~~~------------------- 390 (515)
T TIGR03140 335 ----IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE-LKAD------------------- 390 (515)
T ss_pred ----CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc-CChh-------------------
Confidence 3333443333333334589999999999999999999999999999988762 1100
Q ss_pred HHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC-CcEEEecC--ceEEeCC-----eEEecCC-
Q 016088 245 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGN-----EVIFENG- 315 (395)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--v~~~~~~-----~v~~~~g- 315 (395)
..+.+.+++ .+|+++.+ +.++..+ +|.++++
T Consensus 391 ----------------------------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~ 430 (515)
T TIGR03140 391 ----------------------------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN 430 (515)
T ss_pred ----------------------------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC
Confidence 001233443 57888877 7777655 3666542
Q ss_pred ----cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc----ccCccHHHHHHHHH
Q 016088 316 ----HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIADH 387 (395)
Q Consensus 316 ----~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a~~ 387 (395)
+.+++|.|++|+|+.||.+ ++... ...+++|++.+| +.++|+.|+|||+|||+.. +..|+.+|..+|.+
T Consensus 431 ~~~~~~i~~D~vi~a~G~~Pn~~-~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~ 507 (515)
T TIGR03140 431 SGEEKQLDLDGVFVQIGLVPNTE-WLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALS 507 (515)
T ss_pred CCcEEEEEcCEEEEEeCCcCCch-HHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHH
Confidence 4689999999999999984 54443 345678999999 5778999999999999875 34999999999999
Q ss_pred hhcccC
Q 016088 388 INSILS 393 (395)
Q Consensus 388 i~~~l~ 393 (395)
|.++|.
T Consensus 508 i~~~~~ 513 (515)
T TIGR03140 508 AFDYLI 513 (515)
T ss_pred HHHHHh
Confidence 988763
No 14
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=4.8e-34 Score=271.28 Aligned_cols=298 Identities=17% Similarity=0.198 Sum_probs=201.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeeccccccc----cCCCCCCCCCCCCCCCH-
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR- 80 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~- 80 (395)
+|||+||||||+|+++|..++++|++|+|+|+. .+||++. ..+.|...+....... ..+.+..... ..-...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 699999999999999999999999999999984 6888765 3334332221111100 0011110000 000111
Q ss_pred ----------HHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 81 ----------AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 81 ----------~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.++.++++..+++.++++ ...++..++. ..+.+. .++ ..++||+||+||| ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~---~~g~~~~v~~----~~v~v~-~~g--------~~~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL---LEGRARLVGP----NTVEVL-QDG--------TTYTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEEEEEEecC----CEEEEe-cCC--------eEEEcCEEEEecC--Cc
Confidence 233445555566667663 3446655543 233332 222 6799999999999 88
Q ss_pred CCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHH
Q 016088 151 PFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 151 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (395)
|..|+++|.+.. ..+.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+.++
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~l~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~ 209 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFHLPT-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDM 209 (446)
T ss_pred CCCCCCCCccce----------echHHhhcccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHH
Confidence 998888876531 11122222222 37899999999999999999999999999999987 4444332222
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC-
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 307 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~- 307 (395)
... +.+.+++.+++++.+ +.+++.
T Consensus 210 ~~~-----------------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 210 RAL-----------------------------------------------------LARNMEGRGIRIHPQTSLTSITKT 236 (446)
T ss_pred HHH-----------------------------------------------------HHHHHHHCCCEEEeCCEEEEEEEc
Confidence 211 234466678888887 777763
Q ss_pred -Ce--EEecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccHH
Q 016088 308 -NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAAD 380 (395)
Q Consensus 308 -~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~ 380 (395)
++ +.+.+|+++++|.||+|+|+.||...+ +...+...+++|++.+| ++++|+.|||||+|||++.. ..|..|
T Consensus 237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~ 315 (446)
T TIGR01424 237 DDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIME 315 (446)
T ss_pred CCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHH
Confidence 22 556688889999999999999998544 33442335778999999 56789999999999998753 389999
Q ss_pred HHHHHHHhhc
Q 016088 381 AQNIADHINS 390 (395)
Q Consensus 381 a~~~a~~i~~ 390 (395)
|+.++++|..
T Consensus 316 g~~~a~~i~~ 325 (446)
T TIGR01424 316 ATCFANTEFG 325 (446)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 15
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.3e-34 Score=270.96 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=201.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccC-CCCceeecccccccc-CCCCCCCCCC---CCCCC
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFCQ-LPHLPFPSSY---PMFVS 79 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~-~~~~l~~~~~~~~~~-~~~~~~~~~~---~~~~~ 79 (395)
..+|||+|||||++|+++|..|++.|.+|+|||+. .+||+|... +.|...+......+. ....++.... ..-.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 34799999999999999999999999999999986 689988642 211111100000000 0000100000 00123
Q ss_pred HHHHHHHHHHHHH------------hc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016088 80 RAQFIEYLDHYVS------------HF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (395)
Q Consensus 80 ~~~~~~~l~~~~~------------~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG 146 (395)
..++.++.++.+. .+ +++ ....+++.++ ...|.|++.++.. .+++||+||+|||
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~---~~~g~v~~id----~~~~~V~~~~g~~------~~~~~d~lViATG 149 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAIT---VLNGEARFVD----ERTLTVTLNDGGE------QTVHFDRAFIGTG 149 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeE---EEEEEEEEec----CCEEEEEecCCCe------EEEECCEEEEeCC
Confidence 4444444333322 11 333 3344565554 2557788766422 6799999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh
Q 016088 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE 226 (395)
Q Consensus 147 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~ 226 (395)
++|..|+++|.+.. .++++....... ..+++++|||+|.+|+|+|..|++.|.+|+++.+. ..+|..
T Consensus 150 --s~p~~p~i~G~~~~--------~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~ 216 (468)
T PRK14694 150 --ARPAEPPVPGLAET--------PYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQE 216 (468)
T ss_pred --CCCCCCCCCCCCCC--------ceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCC
Confidence 89999999987653 233333222222 23789999999999999999999999999999864 344433
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceE
Q 016088 227 MVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IES 304 (395)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~ 304 (395)
+..+... +.+.+++.+|+++.+ +.+
T Consensus 217 ~~~~~~~-----------------------------------------------------l~~~l~~~GI~v~~~~~v~~ 243 (468)
T PRK14694 217 DPAVGEA-----------------------------------------------------IEAAFRREGIEVLKQTQASE 243 (468)
T ss_pred CHHHHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEE
Confidence 2222221 244566678888887 777
Q ss_pred EeCCe--EEe-cCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---Ccc
Q 016088 305 IRGNE--VIF-ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAA 378 (395)
Q Consensus 305 ~~~~~--v~~-~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 378 (395)
++.++ +.+ .++.++++|.|++|+|..||...+.....++..++|++.+| +.++|+.|+|||+|||++.+. .|.
T Consensus 244 i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~ 322 (468)
T PRK14694 244 VDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAA 322 (468)
T ss_pred EEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHH
Confidence 76432 222 23457999999999999999854422222344567999998 567899999999999987643 888
Q ss_pred HHHHHHHHHhhcc
Q 016088 379 ADAQNIADHINSI 391 (395)
Q Consensus 379 ~~a~~~a~~i~~~ 391 (395)
.+|+.+|.+|...
T Consensus 323 ~~G~~aa~~i~~~ 335 (468)
T PRK14694 323 AGGSRAAINMTGG 335 (468)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999753
No 16
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=4.7e-34 Score=272.20 Aligned_cols=297 Identities=19% Similarity=0.233 Sum_probs=199.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccc----ccc-CCCCCCCCCCCCCCCH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQ-LPHLPFPSSYPMFVSR 80 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 80 (395)
+|||+||||||+|+++|..|+++|.+|+|||+. .+||+|.. .+.+...+..... +.. ...+.+....+ ....
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN-KFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC-CcCH
Confidence 699999999999999999999999999999986 78887643 3333221110000 000 00000000000 1112
Q ss_pred HH-----------HHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 81 AQ-----------FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 81 ~~-----------~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
.. +.+.+...+++.++++ +.+ .++.++. . +|++ ++ ..++||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~~----~--~v~~-~g--------~~~~~d~lViATG--s 141 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVDA----H--TVEV-NG--------ERYTADHILIATG--G 141 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----C--EEEE-CC--------EEEEeCEEEEecC--C
Confidence 22 2233334445556663 443 3444431 2 3555 32 6799999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
.|..|+++|.+.. .++........ .+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .+++..+..
T Consensus 142 ~p~~p~i~g~~~~----------~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~ 209 (450)
T PRK06116 142 RPSIPDIPGAEYG----------ITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDPD 209 (450)
T ss_pred CCCCCCCCCccee----------EchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCHH
Confidence 8999988876532 23322222222 37899999999999999999999999999999987 333332222
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+. ..+.+.+++.+++++.+ +.+++.
T Consensus 210 ~~-----------------------------------------------------~~l~~~L~~~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 210 IR-----------------------------------------------------ETLVEEMEKKGIRLHTNAVPKAVEK 236 (450)
T ss_pred HH-----------------------------------------------------HHHHHHHHHCCcEEECCCEEEEEEE
Confidence 11 11234566778888887 777763
Q ss_pred C--e---EEecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCcc
Q 016088 308 N--E---VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAA 378 (395)
Q Consensus 308 ~--~---v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~ 378 (395)
+ + +.+.+|+++++|.|++|+|++|+...+ +...+...+++|++.+| ++++|+.|||||+|||++.+ ..|.
T Consensus 237 ~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~ 315 (450)
T PRK06116 237 NADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAI 315 (450)
T ss_pred cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHH
Confidence 2 2 566788899999999999999998644 33343345778999999 56789999999999998653 3899
Q ss_pred HHHHHHHHHhhcc
Q 016088 379 ADAQNIADHINSI 391 (395)
Q Consensus 379 ~~a~~~a~~i~~~ 391 (395)
.||+.+|++|.+.
T Consensus 316 ~~g~~aa~~i~g~ 328 (450)
T PRK06116 316 AAGRRLSERLFNN 328 (450)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999864
No 17
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=6.6e-34 Score=272.00 Aligned_cols=300 Identities=16% Similarity=0.176 Sum_probs=198.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc----CCCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 81 (395)
+|||+||||||+|+++|..|+++|.+|+|||+. .+||+|. ..+.+...+......+. ...+.............
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 599999999999999999999999999999986 5677654 33222211100000000 00001100000012233
Q ss_pred HHHHH-----------HHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 82 QFIEY-----------LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 82 ~~~~~-----------l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
++.++ +....++. ++++ +.++.+. + + ... |... + ..++||+||+||| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v--~~g~~~~-~--~--~~~--v~v~-~--------~~~~~d~lViATG--s 143 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDV--FRGHARF-E--S--PNT--VRVG-G--------ETLRAKRIFINTG--A 143 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEE--EEEEEEE-c--c--CCE--EEEC-c--------EEEEeCEEEEcCC--C
Confidence 33332 23333333 5443 5555431 1 1 122 4442 2 6789999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
.|..|+++|.+.. .++.+.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .++|..+..
T Consensus 144 ~p~~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~ 213 (463)
T PRK06370 144 RAAIPPIPGLDEV--------GYLTNETIFSLDE-LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED 213 (463)
T ss_pred CCCCCCCCCCCcC--------ceEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence 8999999987653 3444444433322 37999999999999999999999999999999988 455543332
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+... +.+.+++.+++++.+ +.+++.
T Consensus 214 ~~~~-----------------------------------------------------l~~~l~~~GV~i~~~~~V~~i~~ 240 (463)
T PRK06370 214 VAAA-----------------------------------------------------VREILEREGIDVRLNAECIRVER 240 (463)
T ss_pred HHHH-----------------------------------------------------HHHHHHhCCCEEEeCCEEEEEEE
Confidence 2221 234466678888887 777764
Q ss_pred C--e--EEec---CCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---C
Q 016088 308 N--E--VIFE---NGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---G 376 (395)
Q Consensus 308 ~--~--v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 376 (395)
+ + +.+. ++.++++|.||+|+|++||...+ +...+...+++|++.+| +.++++.|+|||+|||++... .
T Consensus 241 ~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~ 319 (463)
T PRK06370 241 DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHT 319 (463)
T ss_pred cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHH
Confidence 3 2 3332 34578999999999999998644 34443345778999999 567899999999999987643 8
Q ss_pred ccHHHHHHHHHhhcc
Q 016088 377 AAADAQNIADHINSI 391 (395)
Q Consensus 377 a~~~a~~~a~~i~~~ 391 (395)
|..||+.+|+||...
T Consensus 320 A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 320 AYNDARIVAANLLDG 334 (463)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999999754
No 18
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=9.4e-34 Score=269.47 Aligned_cols=298 Identities=17% Similarity=0.219 Sum_probs=200.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC-CCCccccc-CCCCceeeccccccccCCCCCCCCCCCC-CCCHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF 83 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~-~~gg~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (395)
.|||+|||||++|+++|..|+++|.+|+|||+.+ .+||+|.. .+.+...+.... .. ...+.. .....++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-------~~-~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA-------QQ-HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh-------cc-CCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999876 47888753 222211100000 00 000000 0111222
Q ss_pred HHHHH-----HHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCC
Q 016088 84 IEYLD-----HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (395)
Q Consensus 84 ~~~l~-----~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g 158 (395)
.++++ ...+..+++ .+..++..++ .+.+.|.+.++ . ..+.||+||+||| ++|..|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~gv~---~~~g~~~~i~----~~~~~v~~~~g----~---~~~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNID---VIDGQAEFIN----NHSLRVHRPEG----N---LEIHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcE---EEEEEEEEec----CCEEEEEeCCC----e---EEEEeCEEEEcCC--CcCCCCCCCC
Confidence 23332 111222444 2333444443 24555665443 1 4799999999999 7899999999
Q ss_pred ccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcC
Q 016088 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (395)
.+.. .+ ++++..+.... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .++|..+..+...
T Consensus 139 ~~~~------~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~----- 204 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADN----- 204 (441)
T ss_pred ccCC------CC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHH-----
Confidence 8654 22 34433333322 347899999999999999999999999999999987 5556544332222
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--eEEec-
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EVIFE- 313 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~--~v~~~- 313 (395)
+.+.+++.+++++.+ +.+++.+ .+.+.
T Consensus 205 ------------------------------------------------l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~ 236 (441)
T PRK08010 205 ------------------------------------------------IATILRDQGVDIILNAHVERISHHENQVQVHS 236 (441)
T ss_pred ------------------------------------------------HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence 234566778988877 7777643 34332
Q ss_pred CCcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---CccHHHHHHHHHhh
Q 016088 314 NGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAADAQNIADHIN 389 (395)
Q Consensus 314 ~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~ 389 (395)
++.++++|.|++|+|.+||...+. ...+...+++|++.+| ++++|+.|||||+|||++.+. .+..+|+.++++|.
T Consensus 237 ~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 237 EHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELL 315 (441)
T ss_pred cCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHc
Confidence 233689999999999999985432 3332334678999999 567899999999999988643 88899999999998
Q ss_pred cc
Q 016088 390 SI 391 (395)
Q Consensus 390 ~~ 391 (395)
+.
T Consensus 316 g~ 317 (441)
T PRK08010 316 GE 317 (441)
T ss_pred CC
Confidence 63
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=269.99 Aligned_cols=303 Identities=18% Similarity=0.220 Sum_probs=199.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeeccccccccC----CCCCCCCCCCCCCCH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQL----PHLPFPSSYPMFVSR 80 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ 80 (395)
..|||+||||||+|+++|..|+++|.+|+|||+.. +||+|. ..+.+...+......+.. ..+..... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46999999999999999999999999999999987 888764 444443222111111110 11111000 112234
Q ss_pred HHHHHH-----------HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 81 AQFIEY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 81 ~~~~~~-----------l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
.++.++ +...+++.++++ +.+ .++.++. ..+.+...++ . ..++||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~~----~~~~v~~~~~----~---~~~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVDP----NTVRVMTEDG----E---QTYTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----CEEEEecCCC----c---EEEEeCEEEEeCC--C
Confidence 445544 333444556653 433 3443332 3444543221 1 6799999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
+|..| +|.+.. ...++++.+..... ..+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++|..+..
T Consensus 145 ~p~~~--pg~~~~------~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~ 214 (462)
T PRK06416 145 RPREL--PGIEID------GRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDKE 214 (462)
T ss_pred CCCCC--CCCCCC------CCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCHH
Confidence 77654 344321 11233333333222 237899999999999999999999999999999988 455543332
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+... +.+.+++.+++++.+ +++++.
T Consensus 215 ~~~~-----------------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~ 241 (462)
T PRK06416 215 ISKL-----------------------------------------------------AERALKKRGIKIKTGAKAKKVEQ 241 (462)
T ss_pred HHHH-----------------------------------------------------HHHHHHHcCCEEEeCCEEEEEEE
Confidence 2221 234466678998887 777765
Q ss_pred C--e--EEecCC---cEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cC
Q 016088 308 N--E--VIFENG---HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YG 376 (395)
Q Consensus 308 ~--~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~ 376 (395)
+ . +.+++| +++++|.||+|+|++|+...+ ++..+...+ +|++.+| +.++|+.|+|||+|||+..+ ..
T Consensus 242 ~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~ 319 (462)
T PRK06416 242 TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHK 319 (462)
T ss_pred eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHH
Confidence 4 3 444566 678999999999999998544 233323345 8999998 56779999999999998754 38
Q ss_pred ccHHHHHHHHHhhcc
Q 016088 377 AAADAQNIADHINSI 391 (395)
Q Consensus 377 a~~~a~~~a~~i~~~ 391 (395)
|..||+.+|++|.+.
T Consensus 320 A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 320 ASAEGIIAAEAIAGN 334 (462)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999864
No 20
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-34 Score=257.47 Aligned_cols=291 Identities=19% Similarity=0.256 Sum_probs=219.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCC-CCCCCCCCCHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPF-PSSYPMFVSRAQF 83 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (395)
.++|+|||||++|+.+|..|.++. .++++||+.+..- ..|. ..-.....+..++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-----------------------~~plL~eva~g~l~~~~i 59 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-----------------------FTPLLYEVATGTLSESEI 59 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-----------------------cchhhhhhhcCCCChhhe
Confidence 468999999999999999999975 8999999988321 0010 0011233455666
Q ss_pred HHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016088 84 IEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (395)
Q Consensus 84 ~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~ 162 (395)
.-.++..+++.+ +. +...+|++|+.+. .+ |++.++ ..+.||+||+|+| +.++.+.++|..++
T Consensus 60 ~~p~~~~~~~~~~v~---~~~~~V~~ID~~~--k~--V~~~~~--------~~i~YD~LVvalG--s~~~~fgi~G~~E~ 122 (405)
T COG1252 60 AIPLRALLRKSGNVQ---FVQGEVTDIDRDA--KK--VTLADL--------GEISYDYLVVALG--SETNYFGIPGAAEY 122 (405)
T ss_pred eccHHHHhcccCceE---EEEEEEEEEcccC--CE--EEeCCC--------ccccccEEEEecC--CcCCcCCCCCHHHh
Confidence 677777777554 55 7788999999876 44 777763 7899999999999 89999999998887
Q ss_pred ccCCCCCcceeeccc-----CCCCCCC----CCCeEEEEcCCCCHHHHHHHHHhhcC-------------eeEEEEecCC
Q 016088 163 CSSATGTGEVIHSTQ-----YKNGKPY----GGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVIRSPV 220 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~-----~~~~~~~----~~~~v~ViG~g~~a~e~a~~l~~~g~-------------~v~~~~r~~~ 220 (395)
+.+++....-....+ +...... .-..++|+|+|++|+|+|..|++... +|+++.+.|
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p- 201 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP- 201 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-
Confidence 544444332211111 0111111 12369999999999999999997522 789999998
Q ss_pred cccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEec
Q 016088 221 HVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLP 300 (395)
Q Consensus 221 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (395)
.++|.....++..+ .+.+++.+|+++.
T Consensus 202 ~ILp~~~~~l~~~a-----------------------------------------------------~~~L~~~GV~v~l 228 (405)
T COG1252 202 RILPMFPPKLSKYA-----------------------------------------------------ERALEKLGVEVLL 228 (405)
T ss_pred hhccCCCHHHHHHH-----------------------------------------------------HHHHHHCCCEEEc
Confidence 77777766555544 4457889999999
Q ss_pred C--ceEEeCCeEEecCCcE-EeCcEEEEccCCCCCccccccC-CCCccCCCCCCCCCCCCcccCCCCeEEEecccccc--
Q 016088 301 G--IESIRGNEVIFENGHS-HHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL-- 374 (395)
Q Consensus 301 ~--v~~~~~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~-- 374 (395)
+ |+++++++|++++|+. +++|.+|||+|.+++. +... .+...++.|+++|++..+..+.|+||++|||+..+
T Consensus 229 ~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 229 GTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred CCceEEECCCcEEEccCCeeEecCEEEEcCCCcCCh--hhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 9 9999999999999985 9999999999999976 5555 23345788999999777779999999999997532
Q ss_pred ----c---CccHHHHHHHHHhhcccC
Q 016088 375 ----Y---GAAADAQNIADHINSILS 393 (395)
Q Consensus 375 ----~---~a~~~a~~~a~~i~~~l~ 393 (395)
. .|.+||..+|+||.+.+.
T Consensus 307 ~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 307 RPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 2 899999999999998873
No 21
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.1e-33 Score=270.70 Aligned_cols=301 Identities=18% Similarity=0.231 Sum_probs=200.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccccccCC---CCCC-----CCCCCCC-
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLP---HLPF-----PSSYPMF- 77 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~~~~---~~~~-----~~~~~~~- 77 (395)
|||+||||||+|+++|..++++|.+|+|||+.. +||+|.. .+.+...+.......... .+.. ..++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999876 8887753 333322211111111100 0000 0000100
Q ss_pred CCHHHHHHH-----HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 78 VSRAQFIEY-----LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 78 ~~~~~~~~~-----l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
....++... +...++++++++ +.+ ++..++ ..+|...++ + ..+++|+||+||| +.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~~------~~~v~v~~g----~---~~~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFKD------PKTVKVDLG----R---EVRGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEcc------CCEEEEcCC----e---EEEEeCEEEEcCC--CCCC
Confidence 111223222 223455556653 333 332221 123555432 1 5789999999999 7899
Q ss_pred CCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHH
Q 016088 153 TPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGL 232 (395)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~ 232 (395)
.|+++|.+.. .++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++..
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~ 211 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA 211 (463)
T ss_pred CCCCCCcccC--------ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence 9999987754 2444433333222 36899999999999999999999999999999987 455544333222
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--
Q 016088 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 308 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~-- 308 (395)
. +.+.+++.+|+++.+ +++++.+
T Consensus 212 ~-----------------------------------------------------l~~~l~~~gV~i~~~~~V~~i~~~~~ 238 (463)
T TIGR02053 212 A-----------------------------------------------------VEEALAEEGIEVVTSAQVKAVSVRGG 238 (463)
T ss_pred H-----------------------------------------------------HHHHHHHcCCEEEcCcEEEEEEEcCC
Confidence 1 234456678888887 7777643
Q ss_pred e--EEec---CCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccH
Q 016088 309 E--VIFE---NGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAA 379 (395)
Q Consensus 309 ~--v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~ 379 (395)
. +.+. +++++++|.|++|+|++||...+ +...+...+++|++.+| +.++|+.|+|||+|||++.+ ..|..
T Consensus 239 ~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~ 317 (463)
T TIGR02053 239 GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAK 317 (463)
T ss_pred EEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHH
Confidence 2 3333 23578999999999999998645 44443345778999999 67789999999999998764 38999
Q ss_pred HHHHHHHHhhcc
Q 016088 380 DAQNIADHINSI 391 (395)
Q Consensus 380 ~a~~~a~~i~~~ 391 (395)
||+.+|.+|...
T Consensus 318 ~g~~aa~ni~~~ 329 (463)
T TIGR02053 318 EGVVAAENALGG 329 (463)
T ss_pred HHHHHHHHhcCC
Confidence 999999999864
No 22
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-33 Score=266.39 Aligned_cols=303 Identities=15% Similarity=0.151 Sum_probs=196.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeec-cccccc---cCCCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLH-LAKQFC---QLPHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ 81 (395)
+|||+|||||++|+.+|..|+++|.+|+|||+.+.+||+|. ..++|...+. ...... ....+..... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 69999999999999999999999999999999878899764 3344432211 110000 0000000000 0012223
Q ss_pred HHHHHH-----------HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 82 QFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 82 ~~~~~l-----------~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++.++. ...++..++++ +. ..+..++ ...+.|...++.. ..++||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~-g~a~~~~----~~~v~v~~~~g~~------~~~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--VN-GLGKFTG----GNTLEVTGEDGKT------TVIEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCCce------EEEEcCEEEEeCC--CC
Confidence 333322 23344456663 33 3333322 2444455433311 6799999999999 77
Q ss_pred CCC-CCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 151 PFT-PDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 151 p~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
|.. |.+++... .++.+.+...... .+++++|||+|.+|+|+|..+++.|.+||++.+.+ .++|..+..
T Consensus 148 p~~~p~~~~~~~---------~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~ 216 (471)
T PRK06467 148 PIQLPFIPHDDP---------RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKD 216 (471)
T ss_pred CCCCCCCCCCCC---------cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHH
Confidence 864 43443221 2333333333332 36899999999999999999999999999999988 556655443
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+...+ .+.+++. ++++.+ ++.++.
T Consensus 217 ~~~~~-----------------------------------------------------~~~l~~~-v~i~~~~~v~~i~~ 242 (471)
T PRK06467 217 IVKVF-----------------------------------------------------TKRIKKQ-FNIMLETKVTAVEA 242 (471)
T ss_pred HHHHH-----------------------------------------------------HHHHhhc-eEEEcCCEEEEEEE
Confidence 33322 2334444 777776 666652
Q ss_pred --Ce--EEecCC----cEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---c
Q 016088 308 --NE--VIFENG----HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---Y 375 (395)
Q Consensus 308 --~~--v~~~~g----~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~ 375 (395)
++ +.++++ +++++|.||+|+|++||.+.+. ...+...+++|++.+| ++++|+.|+|||+|||++.+ .
T Consensus 243 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~ 321 (471)
T PRK06467 243 KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAH 321 (471)
T ss_pred cCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHH
Confidence 23 334432 3689999999999999996443 3332345788999999 67789999999999998754 3
Q ss_pred CccHHHHHHHHHhhcc
Q 016088 376 GAAADAQNIADHINSI 391 (395)
Q Consensus 376 ~a~~~a~~~a~~i~~~ 391 (395)
.|..||+.+|.+|...
T Consensus 322 ~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 322 KGVHEGHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8999999999999764
No 23
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=8.7e-33 Score=268.32 Aligned_cols=284 Identities=20% Similarity=0.334 Sum_probs=207.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.|||+||||||||+++|..|+++|++|+|||+. .+||.+.... .+..++. ....+..++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~-------------~i~~~pg----~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS-------------EVVNYPG----ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc-------------ccccCCC----CcCCCHHHHHHH
Confidence 589999999999999999999999999999986 5777543210 0001110 012355788899
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
+++.+++++++ ..+++|++++.+. ..+.+.+.+ ..+.+++||+||| +.|+.|+++|.+.+
T Consensus 66 l~~~~~~~gv~---~~~~~V~~i~~~~--~~~~V~~~~---------g~~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVK---FLQAEVLDVDFDG--DIKTIKTAR---------GDYKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCE---EeccEEEEEEecC--CEEEEEecC---------CEEEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 99888888877 3578898888754 456666643 4578999999999 68888999997665
Q ss_pred CCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHH
Q 016088 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTL 246 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 246 (395)
.+..++++...+.....+++++|||+|.+|+|+|..|++.|.+|+++.|++.. ..... .
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~-~~~~~--~---------------- 184 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF-TCAKL--I---------------- 184 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc-ccCHH--H----------------
Confidence 44445554444444556899999999999999999999999999999998721 10000 0
Q ss_pred HHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe----EEe---cCCcE
Q 016088 247 MVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIF---ENGHS 317 (395)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~----v~~---~~g~~ 317 (395)
..+.+...+|+++.+ +.+++.++ +.+ .+|+.
T Consensus 185 ----------------------------------------~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~ 224 (555)
T TIGR03143 185 ----------------------------------------AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEI 224 (555)
T ss_pred ----------------------------------------HHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCE
Confidence 011123357888777 77776543 222 35654
Q ss_pred E----eCcE----EEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc----ccCccHHHHHHH
Q 016088 318 H----HFDS----IVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADAQNIA 385 (395)
Q Consensus 318 ~----~~D~----vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a~~~a 385 (395)
. ++|. |++++|+.||.. +.+.. ...+++|++.+| ..++|+.|+|||+|||+.. +..|..+|+.+|
T Consensus 225 ~~~~~~~D~~~~~Vi~a~G~~Pn~~-l~~~~-l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa 301 (555)
T TIGR03143 225 TEYKAPKDAGTFGVFVFVGYAPSSE-LFKGV-VELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAA 301 (555)
T ss_pred EEEeccccccceEEEEEeCCCCChh-HHhhh-cccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHH
Confidence 3 3666 999999999984 55543 345778999998 6778899999999999642 458999999999
Q ss_pred HHhhccc
Q 016088 386 DHINSIL 392 (395)
Q Consensus 386 ~~i~~~l 392 (395)
.+|.++|
T Consensus 302 ~~i~~~l 308 (555)
T TIGR03143 302 TSAERYV 308 (555)
T ss_pred HHHHHHH
Confidence 9998876
No 24
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.9e-33 Score=265.79 Aligned_cols=308 Identities=19% Similarity=0.170 Sum_probs=199.8
Q ss_pred CCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeecccccccc----CCCCCCCCCCCC
Q 016088 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPM 76 (395)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~~----~~~~~~~~~~~~ 76 (395)
...+.++|++|||+|++|+++|..|+++|.+|++||+.+.+||+|.. .+.+...+..+..... .+...+....+.
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 33445799999999999999999999999999999998889999864 3333322211111110 011111101011
Q ss_pred CCCHHHHHHHHHHHHH------------hc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEE
Q 016088 77 FVSRAQFIEYLDHYVS------------HF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 77 ~~~~~~~~~~l~~~~~------------~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
.....+......... .. ++++ ... .. ...+ .+.+.|...++.. ..++||+||+
T Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i~G-~a---~f~~-~~~v~v~~~~g~~------~~~~~d~lVi 156 (479)
T PRK14727 91 -IDRGLLLHQQQARVEELRHAKYQSILDGNPALTL--LKG-YA---RFKD-GNTLVVRLHDGGE------RVLAADRCLI 156 (479)
T ss_pred -cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEE--EEE-EE---EEec-CCEEEEEeCCCce------EEEEeCEEEE
Confidence 122233222222111 11 2221 211 11 1222 3566676655421 5799999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCccc
Q 016088 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVL 223 (395)
Q Consensus 144 AtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~ 223 (395)
||| ++|..|+++|.+.. ......+..... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.. .+
T Consensus 157 ATG--s~p~~p~i~G~~~~--------~~~~~~~~l~~~-~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~--~l 223 (479)
T PRK14727 157 ATG--STPTIPPIPGLMDT--------PYWTSTEALFSD-ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST--LL 223 (479)
T ss_pred ecC--CCCCCCCCCCcCcc--------ceecchHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC--CC
Confidence 999 79999999887543 122222222222 237899999999999999999999999999998743 44
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--
Q 016088 224 SREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-- 301 (395)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 301 (395)
|..+..+... +.+.+++.+++++.+
T Consensus 224 ~~~d~~~~~~-----------------------------------------------------l~~~L~~~GV~i~~~~~ 250 (479)
T PRK14727 224 FREDPLLGET-----------------------------------------------------LTACFEKEGIEVLNNTQ 250 (479)
T ss_pred CcchHHHHHH-----------------------------------------------------HHHHHHhCCCEEEcCcE
Confidence 4433322221 234466678888877
Q ss_pred ceEEeC--CeE--EecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc-
Q 016088 302 IESIRG--NEV--IFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY- 375 (395)
Q Consensus 302 v~~~~~--~~v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~- 375 (395)
++.++. +.+ .+.++ ++++|.|++|+|+.||...+ +...+...+++|.+.|| +.++|+.|+|||+|||++.+.
T Consensus 251 V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~ 328 (479)
T PRK14727 251 ASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQF 328 (479)
T ss_pred EEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchh
Confidence 666653 333 33444 68999999999999998544 33332335778999999 567899999999999987643
Q ss_pred --CccHHHHHHHHHhhcc
Q 016088 376 --GAAADAQNIADHINSI 391 (395)
Q Consensus 376 --~a~~~a~~~a~~i~~~ 391 (395)
.|..+|+.+|.+|.+.
T Consensus 329 ~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 329 VYVAAAAGSRAGINMTGG 346 (479)
T ss_pred hhHHHHHHHHHHHHHcCC
Confidence 8899999999999764
No 25
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7.1e-33 Score=263.58 Aligned_cols=309 Identities=16% Similarity=0.164 Sum_probs=197.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCeEEEecC--------CCCCcccc-cCCCCceeeccccccc-cC---CCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERE--------NCYASIWK-KYSYDRLRLHLAKQFC-QL---PHLPFP 71 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-~~~v~vie~~--------~~~gg~~~-~~~~~~l~~~~~~~~~-~~---~~~~~~ 71 (395)
.+|||+|||||++|..+|..+++. |.+|+|||+. ..+||++- ..+.|...+....... .. ..+...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 469999999999999999999996 8999999973 46898764 3333332221111110 00 000000
Q ss_pred CC-CCCCCCHHHHHHHHH-----------HHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEe
Q 016088 72 SS-YPMFVSRAQFIEYLD-----------HYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (395)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~-----------~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (395)
.. ...-....++.++.+ ..+++. ++++ +... ..-+ +.....|....+...+.. ..++|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~--i~G~-a~f~----~~~~v~V~~~~~~~~~~~--~~~~~ 152 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF--FLGW-GALE----DKNVVLVRESADPKSAVK--ERLQA 152 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEE--EEEE-EEEc----cCCEEEEeeccCCCCCcc--eEEEC
Confidence 00 000112222222222 222221 4442 2222 1111 123333332111000011 68999
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhh---cCeeEEE
Q 016088 139 RFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLV 215 (395)
Q Consensus 139 d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~---g~~v~~~ 215 (395)
|+||+||| +.|..|+++|.+.. ..+.+...... .+++++|||+|.+|+|+|..+..+ |.+||++
T Consensus 153 d~lIIATG--s~p~~p~i~G~~~~----------~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli 219 (486)
T TIGR01423 153 EHILLATG--SWPQMLGIPGIEHC----------ISSNEAFYLDE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC 219 (486)
T ss_pred CEEEEecC--CCCCCCCCCChhhe----------echhhhhcccc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999999 78999998886532 22222222222 378999999999999999887765 8999999
Q ss_pred EecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCc
Q 016088 216 IRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQ 295 (395)
Q Consensus 216 ~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (395)
.+.+ .++|..+.++...+ .+.+++.+
T Consensus 220 ~~~~-~il~~~d~~~~~~l-----------------------------------------------------~~~L~~~G 245 (486)
T TIGR01423 220 YRNN-MILRGFDSTLRKEL-----------------------------------------------------TKQLRANG 245 (486)
T ss_pred ecCC-ccccccCHHHHHHH-----------------------------------------------------HHHHHHcC
Confidence 9988 55555444333322 34466678
Q ss_pred EEEecC--ceEEeCC-----eEEecCCcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEE
Q 016088 296 IQVLPG--IESIRGN-----EVIFENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCV 367 (395)
Q Consensus 296 i~~~~~--v~~~~~~-----~v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~ 367 (395)
|+++.+ +++++.+ .+.+.+|+++++|.|++|+|++||...+. ...+...+++|++.+| +.++|+.|||||+
T Consensus 246 I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~ 324 (486)
T TIGR01423 246 INIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAI 324 (486)
T ss_pred CEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEe
Confidence 888887 7777632 36667888999999999999999986442 3332345778999999 5677999999999
Q ss_pred eccccccc---CccHHHHHHHHHhhcc
Q 016088 368 GLSRKGLY---GAAADAQNIADHINSI 391 (395)
Q Consensus 368 Gd~~~~~~---~a~~~a~~~a~~i~~~ 391 (395)
|||++.+. .|..||+.++++|...
T Consensus 325 GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 325 GDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred eecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 99988643 8999999999999763
No 26
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=270.29 Aligned_cols=302 Identities=18% Similarity=0.172 Sum_probs=199.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccccc-cCCCC----CCCCCCCCCCCH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC-QLPHL----PFPSSYPMFVSR 80 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~-~~~~~----~~~~~~~~~~~~ 80 (395)
+|||+|||||++|+++|..|+++|.+|+|||++ .+||+|.. .+.|...+..+.... ..... ......+ ....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCH
Confidence 699999999999999999999999999999987 78998863 333332221111100 00000 1110111 1233
Q ss_pred HHHHHHHHHHH------------Hhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 81 AQFIEYLDHYV------------SHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 81 ~~~~~~l~~~~------------~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
..+.++..... +.+ +++ .+..++..++ ...+.|...++.. ..++||+||+|||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~----~~~~~v~~~~g~~------~~~~~d~lviAtG- 241 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAIT---VLHGEARFKD----DQTLIVRLNDGGE------RVVAFDRCLIATG- 241 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeE---EEEEEEEEec----CCEEEEEeCCCce------EEEEcCEEEEcCC-
Confidence 44444333222 222 333 2333444332 2456666544321 5799999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh
Q 016088 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (395)
Q Consensus 148 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (395)
++|..|+++|.+.. ..+...+.... ...+++++|||+|.+|+|+|..|.+.|.+|+++.|.+ .+|..+
T Consensus 242 -s~p~~p~i~g~~~~--------~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d 309 (561)
T PRK13748 242 -ASPAVPPIPGLKET--------PYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFRED 309 (561)
T ss_pred -CCCCCCCCCCCCcc--------ceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccC
Confidence 88999999887653 12222222222 2237899999999999999999999999999999853 344433
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEE
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~ 305 (395)
..+... +.+.+++.+|+++.+ ++++
T Consensus 310 ~~~~~~-----------------------------------------------------l~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 310 PAIGEA-----------------------------------------------------VTAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHHCCCEEEcCCEEEEE
Confidence 332222 234466678888877 7777
Q ss_pred eCC--eE--EecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCc
Q 016088 306 RGN--EV--IFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGA 377 (395)
Q Consensus 306 ~~~--~v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a 377 (395)
+.+ .+ .+.+ .++++|.|++|+|++||...+ +...+...+++|++.|| ++++|+.|||||+|||++.+ ..|
T Consensus 337 ~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A 414 (561)
T PRK13748 337 AHVDGEFVLTTGH-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVA 414 (561)
T ss_pred EecCCEEEEEecC-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHH
Confidence 532 23 3334 469999999999999999544 33443345778999999 67889999999999998763 388
Q ss_pred cHHHHHHHHHhhcc
Q 016088 378 AADAQNIADHINSI 391 (395)
Q Consensus 378 ~~~a~~~a~~i~~~ 391 (395)
..+|+.++.+|.+.
T Consensus 415 ~~~g~~aa~~i~g~ 428 (561)
T PRK13748 415 AAAGTRAAINMTGG 428 (561)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999753
No 27
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.9e-33 Score=270.22 Aligned_cols=299 Identities=15% Similarity=0.214 Sum_probs=197.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEec---------CCCCCcccc-cCCCCceeecccccccc-C---CCCCC--
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER---------ENCYASIWK-KYSYDRLRLHLAKQFCQ-L---PHLPF-- 70 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~---------~~~~gg~~~-~~~~~~l~~~~~~~~~~-~---~~~~~-- 70 (395)
+|||+|||+|++|+.+|..++++|.+|+|||+ ...+||++- ..+.|...+........ + ..+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 58999999999999999999999999999996 245788664 33333222211111100 0 00110
Q ss_pred ----CCCCCCCCCH-----HHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEE
Q 016088 71 ----PSSYPMFVSR-----AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (395)
Q Consensus 71 ----~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (395)
..++.....+ .++.+++.+.+++.++++ +..+++.++. . .|.. ++ ..++||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~---i~G~a~~vd~----~--~V~v-~G--------~~~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL---IEGRGKIVDP----H--TVDV-DG--------KLYTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEeEEEEccC----C--EEEE-CC--------EEEECCEE
Confidence 0011111111 223344555555666653 3334444432 2 2444 22 67899999
Q ss_pred EEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCc
Q 016088 142 VVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (395)
Q Consensus 142 VlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~ 221 (395)
|+||| ++|..|+++|.+.. +.+....... ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~~~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHhcc-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 89999999886532 2222222222 247899999999999999999999999999999987 4
Q ss_pred ccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC
Q 016088 222 VLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG 301 (395)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (395)
++|..+..+... +.+.+++.+|+++.+
T Consensus 287 il~~~d~~~~~~-----------------------------------------------------l~~~L~~~GV~i~~~ 313 (558)
T PLN02546 287 VLRGFDEEVRDF-----------------------------------------------------VAEQMSLRGIEFHTE 313 (558)
T ss_pred cccccCHHHHHH-----------------------------------------------------HHHHHHHCCcEEEeC
Confidence 444433322221 234466678998887
Q ss_pred --ceEEeC---CeE--EecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc
Q 016088 302 --IESIRG---NEV--IFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 373 (395)
Q Consensus 302 --v~~~~~---~~v--~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 373 (395)
+.+++. +.+ .+.+++...+|.|++|+|++||...+ ++..+...+++|++.+| ++++|+.|||||+|||++.
T Consensus 314 ~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~ 392 (558)
T PLN02546 314 ESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDR 392 (558)
T ss_pred CEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCC
Confidence 667753 223 33455444589999999999998544 34443445778999999 6778999999999999876
Q ss_pred cc---CccHHHHHHHHHhhcc
Q 016088 374 LY---GAAADAQNIADHINSI 391 (395)
Q Consensus 374 ~~---~a~~~a~~~a~~i~~~ 391 (395)
+. .|..+|+.+|++|.+.
T Consensus 393 ~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 393 INLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred cccHHHHHHHHHHHHHHHcCC
Confidence 43 8889999999999763
No 28
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.5e-33 Score=264.49 Aligned_cols=309 Identities=17% Similarity=0.173 Sum_probs=199.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccccc---------cCCCCCCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC---------QLPHLPFPSSYPM 76 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~ 76 (395)
.|||+||||||+|+++|..|+++|.+|+|||+. .+||+|.. .+.+...+......+ .+.......++..
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 699999999999999999999999999999986 78998864 333322111111110 0100000001110
Q ss_pred CC-CHHHHHHHH----HHHHHhcCCcceeeeeeeEEEeEEe---CCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 77 FV-SRAQFIEYL----DHYVSHFNIVPSIRYQRSVESASYD---EATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 77 ~~-~~~~~~~~l----~~~~~~~~~~~~i~~~~~V~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
.. ...++.+.+ ...+++.+++ .+...++.++.+ ++.+.+.|.+.++.. ..++||+||+|||
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~---~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~------~~~~~d~lViATG-- 151 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKID---VFHGIGRILGPSIFSPMPGTVSVETETGEN------EMIIPENLLIATG-- 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEeCCCCCcCCceEEEEEeCCCce------EEEEcCEEEEeCC--
Confidence 00 112222222 3344555666 444556656543 112466677655422 6799999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhH
Q 016088 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (395)
Q Consensus 149 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (395)
++|..++ +.... ...++++.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.
T Consensus 152 s~p~~~p--~~~~~------~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~ 221 (472)
T PRK05976 152 SRPVELP--GLPFD------GEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA 221 (472)
T ss_pred CCCCCCC--CCCCC------CceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH
Confidence 6776443 22211 111333333333222 37899999999999999999999999999999988 55555443
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
.+...+ .+.+++.+|+++.+ +.+++
T Consensus 222 ~~~~~l-----------------------------------------------------~~~l~~~gI~i~~~~~v~~i~ 248 (472)
T PRK05976 222 ELSKEV-----------------------------------------------------ARLLKKLGVRVVTGAKVLGLT 248 (472)
T ss_pred HHHHHH-----------------------------------------------------HHHHHhcCCEEEeCcEEEEEE
Confidence 332222 34466678888888 77776
Q ss_pred ---CCeE---EecCCc--EEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---c
Q 016088 307 ---GNEV---IFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---Y 375 (395)
Q Consensus 307 ---~~~v---~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~ 375 (395)
.+++ .+.+|+ ++++|.|++|+|.+|+.+.+..+...+...+|.+.+| +.++++.|+|||+|||++.+ .
T Consensus 249 ~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~ 327 (472)
T PRK05976 249 LKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQID-DFCQTKERHIYAIGDVIGEPQLAH 327 (472)
T ss_pred EecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEEC-CCcccCCCCEEEeeecCCCcccHH
Confidence 3433 234663 6899999999999999865432222343457889998 56778999999999998764 3
Q ss_pred CccHHHHHHHHHhhcc
Q 016088 376 GAAADAQNIADHINSI 391 (395)
Q Consensus 376 ~a~~~a~~~a~~i~~~ 391 (395)
.|..+|+.++++|.+.
T Consensus 328 ~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 328 VAMAEGEMAAEHIAGK 343 (472)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 8999999999999754
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=264.19 Aligned_cols=308 Identities=18% Similarity=0.256 Sum_probs=198.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc-C---CCCCCC----CCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-L---PHLPFP----SSYPM 76 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~-~---~~~~~~----~~~~~ 76 (395)
.+|||+|||||++|+.+|..+++.|.+|+|||++ .+||++. ..+.|...+........ . ..+... .++..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 3689999999999999999999999999999986 6888654 33333322221111111 0 001110 01010
Q ss_pred CC-CHHHH----HHHHHHHHHhcCCcceeeeeee-EEE---eE--------E---eCCCCcEEEEE----eecCCCCcee
Q 016088 77 FV-SRAQF----IEYLDHYVSHFNIVPSIRYQRS-VES---AS--------Y---DEATNMWNVKA----SNLLSPGRVI 132 (395)
Q Consensus 77 ~~-~~~~~----~~~l~~~~~~~~~~~~i~~~~~-V~~---i~--------~---~~~~~~~~v~~----~~~~~~~~~~ 132 (395)
.. ...++ .+.+.+..++.+++. +.+.- +.+ +. . ..+....+|.. ....+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g----- 198 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG----- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-----
Confidence 00 11122 223334445556654 33332 111 00 0 00112222321 01111
Q ss_pred eEEEEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCee
Q 016088 133 EEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKT 212 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v 212 (395)
..++||+||+||| ++|..|+++|.+. ++.+.++..... +++++|||+|.+|+|+|..+++.|.+|
T Consensus 199 -~~i~ad~lVIATG--S~P~~P~IpG~~~----------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~V 263 (561)
T PTZ00058 199 -QVIEGKNILIAVG--NKPIFPDVKGKEF----------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAES 263 (561)
T ss_pred -cEEECCEEEEecC--CCCCCCCCCCcee----------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcE
Confidence 5799999999999 8999999888642 233333333322 789999999999999999999999999
Q ss_pred EEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhc
Q 016088 213 SLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIK 292 (395)
Q Consensus 213 ~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (395)
|++.+.+ +++|..+.++...+ .+.++
T Consensus 264 tli~~~~-~il~~~d~~i~~~l-----------------------------------------------------~~~L~ 289 (561)
T PTZ00058 264 YIFARGN-RLLRKFDETIINEL-----------------------------------------------------ENDMK 289 (561)
T ss_pred EEEEecc-cccccCCHHHHHHH-----------------------------------------------------HHHHH
Confidence 9999988 55555443333222 34466
Q ss_pred CCcEEEecC--ceEEeCC---e--EEecCC-cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCe
Q 016088 293 SGQIQVLPG--IESIRGN---E--VIFENG-HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGL 364 (395)
Q Consensus 293 ~~~i~~~~~--v~~~~~~---~--v~~~~g-~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 364 (395)
+.+|+++.+ +.+++.+ + +.+.++ +++++|.|++|+|++||...+..+.....+++|++.|| ++++|+.|+|
T Consensus 290 ~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VD-e~lqTs~p~I 368 (561)
T PTZ00058 290 KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD-DNQRTSVKHI 368 (561)
T ss_pred HCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEEC-cCCccCCCCE
Confidence 678888887 7777643 2 333344 57899999999999999865543332345678999999 6788999999
Q ss_pred EEEecccc----------------------------------ccc---CccHHHHHHHHHhhcc
Q 016088 365 YCVGLSRK----------------------------------GLY---GAAADAQNIADHINSI 391 (395)
Q Consensus 365 ya~Gd~~~----------------------------------~~~---~a~~~a~~~a~~i~~~ 391 (395)
||+|||++ .+. .|..||+.+|++|.+.
T Consensus 369 YA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 369 YAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred EEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99999987 222 7899999999999764
No 30
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=5.8e-32 Score=258.04 Aligned_cols=308 Identities=17% Similarity=0.139 Sum_probs=202.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeecccccc-ccC---CCCCCCCC--CCCCCCH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF-CQL---PHLPFPSS--YPMFVSR 80 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~-~~~---~~~~~~~~--~~~~~~~ 80 (395)
.||+|||+|++|+.+|..++++|.+|++||+.. +||++.. .+.|...+...... ..+ ..+..... -......
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 479999999999999999999999999999875 7887653 33322111100000 000 00000000 0001112
Q ss_pred HHH-----------HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 81 AQF-----------IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 81 ~~~-----------~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
..+ .+.+.+.+++++++ .+...++.++...+...+.|.+.++.. ..+.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~~~g~~~~~~~~~~~~~v~V~~~~g~~------~~~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVR---VIAGRGRLIDPGLGPHRVKVTTADGGE------ETLDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEEEEEEEeecccCCCEEEEEeCCCce------EEEecCEEEEcCC--C
Confidence 222 22344445556766 344444443311122555565544311 4799999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHH
Q 016088 150 NPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVY 229 (395)
Q Consensus 150 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~ 229 (395)
.|..|+.++.... .+++..+....... +++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+..
T Consensus 150 ~p~~~p~~~~~~~--------~v~~~~~~~~~~~~-~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~ 219 (466)
T PRK07845 150 SPRILPTAEPDGE--------RILTWRQLYDLDEL-PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD 219 (466)
T ss_pred CCCCCCCCCCCCc--------eEEeehhhhccccc-CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence 7876654433221 24444444443333 6899999999999999999999999999999987 555554433
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC
Q 016088 230 LGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG 307 (395)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~ 307 (395)
+... +.+.+++.+|+++.+ +.+++.
T Consensus 220 ~~~~-----------------------------------------------------l~~~L~~~gV~i~~~~~v~~v~~ 246 (466)
T PRK07845 220 AAEV-----------------------------------------------------LEEVFARRGMTVLKRSRAESVER 246 (466)
T ss_pred HHHH-----------------------------------------------------HHHHHHHCCcEEEcCCEEEEEEE
Confidence 3222 234566778998887 777752
Q ss_pred --Ce--EEecCCcEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccH
Q 016088 308 --NE--VIFENGHSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAA 379 (395)
Q Consensus 308 --~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~ 379 (395)
++ +.+.+|+++++|.|++++|++||...+ +...+...+++|++.+| ++++|+.|||||+||+++.+ ..|..
T Consensus 247 ~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~ 325 (466)
T PRK07845 247 TGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAM 325 (466)
T ss_pred eCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHH
Confidence 33 556788899999999999999998543 34443345778999999 57789999999999998763 38999
Q ss_pred HHHHHHHHhhcc
Q 016088 380 DAQNIADHINSI 391 (395)
Q Consensus 380 ~a~~~a~~i~~~ 391 (395)
||..++.+|...
T Consensus 326 ~g~~aa~~i~g~ 337 (466)
T PRK07845 326 QGRIAMYHALGE 337 (466)
T ss_pred HHHHHHHHHcCC
Confidence 999999999763
No 31
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=9.7e-33 Score=261.55 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=196.3
Q ss_pred eEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCC-CCCHHHHHH
Q 016088 9 EVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIE 85 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 85 (395)
+|+|||||++|+.+|..|+++ +.+|+|||+++.++ +... ..++ .... .....+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~-----------------~lp~--~~~~~~~~~~~~~~ 61 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANC-----------------ALPY--YIGEVVEDRKYALA 61 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccC-----------------Ccch--hhcCccCCHHHccc
Confidence 799999999999999999886 57999999988543 1100 0000 0001 111222222
Q ss_pred HH-HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 86 YL-DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 86 ~l-~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
+. ..+.++.++.+ +.+++|++|+.++ ..+.+....+ ++. ..++||+||+||| +.|+.|++++..
T Consensus 62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~v~~~~~~~---~~~--~~~~yd~lviAtG--s~~~~~~~~~~~---- 126 (438)
T PRK13512 62 YTPEKFYDRKQITV--KTYHEVIAINDER--QTVTVLNRKT---NEQ--FEESYDKLILSPG--ASANSLGFESDI---- 126 (438)
T ss_pred CCHHHHHHhCCCEE--EeCCEEEEEECCC--CEEEEEECCC---CcE--EeeecCEEEECCC--CCCCCCCCCCCC----
Confidence 22 23345567665 8889999998765 5544433221 111 4689999999999 788877654221
Q ss_pred CCCCCcceeecccCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhc
Q 016088 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRY 237 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~ 237 (395)
++......+. ....+++++|||+|.+|+|+|..|++.|.+|+++.+++ .++|..+..+..
T Consensus 127 -------~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~----- 193 (438)
T PRK13512 127 -------TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQ----- 193 (438)
T ss_pred -------eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHH-----
Confidence 1221111110 11236899999999999999999999999999999987 344433222221
Q ss_pred CChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCeEEecCC
Q 016088 238 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENG 315 (395)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~v~~~~g 315 (395)
.+.+.+++.+|+++.+ +++++...+.+++|
T Consensus 194 ------------------------------------------------~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g 225 (438)
T PRK13512 194 ------------------------------------------------PILDELDKREIPYRLNEEIDAINGNEVTFKSG 225 (438)
T ss_pred ------------------------------------------------HHHHHHHhcCCEEEECCeEEEEeCCEEEECCC
Confidence 1245567788999887 88998888989899
Q ss_pred cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc----------cc---CccHHHH
Q 016088 316 HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG----------LY---GAAADAQ 382 (395)
Q Consensus 316 ~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~----------~~---~a~~~a~ 382 (395)
+.+++|.|++|+|++||.+ ++...+...+++|++.+| ++++++.|||||+|||++. +. .|..+|+
T Consensus 226 ~~~~~D~vl~a~G~~pn~~-~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~ 303 (438)
T PRK13512 226 KVEHYDMIIEGVGTHPNSK-FIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAAS 303 (438)
T ss_pred CEEEeCEEEECcCCCcChH-HHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHH
Confidence 9999999999999999984 555443345678999998 5677999999999999752 11 4778999
Q ss_pred HHHHHhhcc
Q 016088 383 NIADHINSI 391 (395)
Q Consensus 383 ~~a~~i~~~ 391 (395)
.++++|.+.
T Consensus 304 ~~a~ni~g~ 312 (438)
T PRK13512 304 IVAEQIAGN 312 (438)
T ss_pred HHHHHhcCC
Confidence 999999763
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.7e-32 Score=260.88 Aligned_cols=307 Identities=17% Similarity=0.193 Sum_probs=193.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccccc-c----CCCCCCCCCCCCCCCH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC-Q----LPHLPFPSSYPMFVSR 80 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 80 (395)
+|||+|||||++|+++|..|+++|.+|+|||++ .+||++.. .+.+...+....... . ...+.... ......
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~--~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG--EVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc--CcccCH
Confidence 589999999999999999999999999999985 57776543 333321111000000 0 00011100 011222
Q ss_pred HHHHHHHHHHHHhc--CCcceeee-eeeEEEeEE---eCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 81 AQFIEYLDHYVSHF--NIVPSIRY-QRSVESASY---DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 81 ~~~~~~l~~~~~~~--~~~~~i~~-~~~V~~i~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
..+....++..+.. ++.. .+ ...|+.+.- ..+...+.+...++.. ..++||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~------~~~~~d~lViATG--s~p~~~ 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHF--LMKKNKITEIHGYGTFTDANTLEVDLNDGGT------ETVTFDNAIIATG--SSTRLL 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCCEEEEEEEEEcCCCEEEEEecCCCe------eEEEcCEEEEeCC--CCCCCC
Confidence 33333322221111 1100 11 012222221 0112444555444322 6799999999999 777654
Q ss_pred CCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHH
Q 016088 155 DIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVL 234 (395)
Q Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~ 234 (395)
+|.+. .+.++.+.+..... ..+++++|||+|.+|+|+|..+++.|.+|+++.+.+ ..+|..+..+...
T Consensus 151 --pg~~~-------~~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~- 218 (466)
T PRK07818 151 --PGTSL-------SENVVTYEEQILSR-ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKE- 218 (466)
T ss_pred --CCCCC-------CCcEEchHHHhccc-cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHH-
Confidence 44332 12233333222222 247899999999999999999999999999999987 5666544333322
Q ss_pred hhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe---
Q 016088 235 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--- 309 (395)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~--- 309 (395)
+.+.+++.+|+++.+ +++++.++
T Consensus 219 ----------------------------------------------------l~~~l~~~gV~i~~~~~v~~i~~~~~~~ 246 (466)
T PRK07818 219 ----------------------------------------------------IAKQYKKLGVKILTGTKVESIDDNGSKV 246 (466)
T ss_pred ----------------------------------------------------HHHHHHHCCCEEEECCEEEEEEEeCCeE
Confidence 234466778999887 77776542
Q ss_pred -EEec--CC--cEEeCcEEEEccCCCCCcccc-ccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccHH
Q 016088 310 -VIFE--NG--HSHHFDSIVFCTGFKRSTNVW-LKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAAD 380 (395)
Q Consensus 310 -v~~~--~g--~~~~~D~vi~atG~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~ 380 (395)
+.+. +| +++++|.|++|+|++||...+ +...+...+++|++.+| ++++|+.|+|||+|||++.+ ..|..|
T Consensus 247 ~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~ 325 (466)
T PRK07818 247 TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQ 325 (466)
T ss_pred EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHH
Confidence 3444 66 368999999999999998644 33443344678999999 56789999999999998753 389999
Q ss_pred HHHHHHHhhcc
Q 016088 381 AQNIADHINSI 391 (395)
Q Consensus 381 a~~~a~~i~~~ 391 (395)
|+.+|++|.+.
T Consensus 326 g~~aa~~i~g~ 336 (466)
T PRK07818 326 GVVAAETIAGA 336 (466)
T ss_pred HHHHHHHHcCC
Confidence 99999999864
No 33
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=6.6e-33 Score=261.61 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=202.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
.+++|+|||||++|+.+|..|.+.+.+|+|||+++.+- |..+ .+.......+..++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 35799999999999999999987778999999887321 1000 0000111223345555
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecC--CCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL--SPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~ 163 (395)
.++..++.+++. +...+|++|+.++ ..+.+...+.. ..+.. ..+.||+||+||| +.+..+.+||..+..
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtG--s~~~~~~ipG~~e~~ 137 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANVNT--FSVPYDKLVVAHG--ARPNTFNIPGVEERA 137 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccCCc--eEecCCEEEECCC--cccCCCCCCCHHHcC
Confidence 566666666655 6778999999865 55444221110 00011 6799999999999 788888888876431
Q ss_pred cCCCCCcceeeccc-----C--CCC------CCCCCCeEEEEcCCCCHHHHHHHHHhh--------------cCeeEEEE
Q 016088 164 SSATGTGEVIHSTQ-----Y--KNG------KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVI 216 (395)
Q Consensus 164 ~~~~~~~~~~~~~~-----~--~~~------~~~~~~~v~ViG~g~~a~e~a~~l~~~--------------g~~v~~~~ 216 (395)
.+.+.........+ + ... ...+.++++|||+|.+|+|+|..|++. +.+|++++
T Consensus 138 ~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~ 217 (424)
T PTZ00318 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLE 217 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEc
Confidence 11111100000000 0 000 011235899999999999999999863 57899999
Q ss_pred ecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcE
Q 016088 217 RSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI 296 (395)
Q Consensus 217 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 296 (395)
+++ .++|..+..+.. ...+.+++.+|
T Consensus 218 ~~~-~ll~~~~~~~~~-----------------------------------------------------~~~~~L~~~gV 243 (424)
T PTZ00318 218 AGS-EVLGSFDQALRK-----------------------------------------------------YGQRRLRRLGV 243 (424)
T ss_pred CCC-cccccCCHHHHH-----------------------------------------------------HHHHHHHHCCC
Confidence 887 444433222221 12455777899
Q ss_pred EEecC--ceEEeCCeEEecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-
Q 016088 297 QVLPG--IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG- 373 (395)
Q Consensus 297 ~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~- 373 (395)
+++.+ |++++.+.+.+++|+++++|.+|+++|.+|+. +........+++|++.||+..+.++.|||||+|||+..
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~ 321 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANE 321 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCC
Confidence 99987 99999999999999999999999999999984 44444334577899999954444799999999999863
Q ss_pred ----c---cCccHHHHHHHHHhhccc
Q 016088 374 ----L---YGAAADAQNIADHINSIL 392 (395)
Q Consensus 374 ----~---~~a~~~a~~~a~~i~~~l 392 (395)
+ ..|..||..+|++|.+.+
T Consensus 322 ~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 322 ERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 2 268899999999998876
No 34
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.4e-32 Score=257.19 Aligned_cols=297 Identities=17% Similarity=0.207 Sum_probs=194.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC-CCcccc-cCCCCceeeccccccccCCCCCCCCCCCCCC-CHHH-
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC-YASIWK-KYSYDRLRLHLAKQFCQLPHLPFPSSYPMFV-SRAQ- 82 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~-~gg~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 82 (395)
+|||+||||||+|+++|..|+++|.+|+|||+++. +||++. ..+.+...+...... ..++.... ....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------~~~~~~~~~~~~~~ 74 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------NLSFEQVMATKNTV 74 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------CCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999864 688653 222221111100000 00001000 0111
Q ss_pred ---HHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc
Q 016088 83 ---FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL 159 (395)
Q Consensus 83 ---~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~ 159 (395)
+.....+...+.+++. +..+ ...++ ... |....+. +. ..++||+||+||| ++|+.|+++|.
T Consensus 75 ~~~~~~~~~~~~~~~gV~~--~~g~-~~~~~----~~~--v~v~~~~--~~---~~~~~d~vViATG--s~~~~p~i~G~ 138 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDL--YDAE-AHFVS----NKV--IEVQAGD--EK---IELTAETIVINTG--AVSNVLPIPGL 138 (438)
T ss_pred HHHHHHHHHHHHHhCCCEE--EEEE-EEEcc----CCE--EEEeeCC--Cc---EEEEcCEEEEeCC--CCCCCCCCCCc
Confidence 1112223344445553 3332 22221 233 4333221 01 6799999999999 78999999987
Q ss_pred cccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCC
Q 016088 160 SSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (395)
+.. . .++++..+..... .+++++|||+|.+|+|+|..+++.|.+|+++.+++ .++|..+..+...
T Consensus 139 ~~~------~-~v~~~~~~~~~~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~------ 203 (438)
T PRK07251 139 ADS------K-HVYDSTGIQSLET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAAL------ 203 (438)
T ss_pred CCC------C-cEEchHHHhcchh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHH------
Confidence 543 1 2344433333332 37899999999999999999999999999999988 4555433322221
Q ss_pred hhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--eE-EecC
Q 016088 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--EV-IFEN 314 (395)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~--~v-~~~~ 314 (395)
..+.+++.+++++.+ +++++.+ .+ ...+
T Consensus 204 -----------------------------------------------~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~ 236 (438)
T PRK07251 204 -----------------------------------------------AKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE 236 (438)
T ss_pred -----------------------------------------------HHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC
Confidence 133456678888887 7777643 33 3346
Q ss_pred CcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccHHHHHHHHHhhc
Q 016088 315 GHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINS 390 (395)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~ 390 (395)
|+++++|.||+|+|++|+.+.+. .......+++|++.+| +.++++.|||||+|||+++. ..+..+++.++.++.+
T Consensus 237 g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 237 DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 77899999999999999985432 2222234677999999 56789999999999998864 3778888888888865
No 35
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-32 Score=258.43 Aligned_cols=303 Identities=16% Similarity=0.177 Sum_probs=191.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc------CCCCCCCCCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ------LPHLPFPSSYPMFVS 79 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~ 79 (395)
+|||+||||||+|++||..++++|.+|+|||++..+||++. ..+.|...+......+. ...+..... . ...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~-~-~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVK-P-TLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcccc-C-ccC
Confidence 58999999999999999999999999999998778999764 33333222111111110 000000000 0 111
Q ss_pred HHHHHH-----------HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 80 RAQFIE-----------YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 80 ~~~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
..++.+ .+....+..+++. .... . .+. ....+.|...++.. ..++||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~~---~~~~v~v~~~~g~~------~~~~~d~lVIATG-- 145 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RLD---GVGKVVVKAEDGSE------TQLEAKDIVIATG-- 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EEc---cCCEEEEEcCCCce------EEEEeCEEEEeCC--
Confidence 222221 2222233334442 3222 1 222 12445555444321 5799999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhH
Q 016088 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (395)
Q Consensus 149 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (395)
++|. +++|.... ...++++....... ..+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.
T Consensus 146 s~p~--~ipg~~~~------~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~ 215 (466)
T PRK06115 146 SEPT--PLPGVTID------NQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT 215 (466)
T ss_pred CCCC--CCCCCCCC------CCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH
Confidence 6664 34554321 11233333333322 237999999999999999999999999999999887 55554333
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
.+... +.+.+++.+|+++.+ +++++
T Consensus 216 ~~~~~-----------------------------------------------------l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 216 ETAKT-----------------------------------------------------LQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred HHHHH-----------------------------------------------------HHHHHHhcCCEEEECcEEEEEE
Confidence 22221 234466678888887 77776
Q ss_pred CC--eE--Eec---C--CcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc-
Q 016088 307 GN--EV--IFE---N--GHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY- 375 (395)
Q Consensus 307 ~~--~v--~~~---~--g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~- 375 (395)
.+ ++ .+. + ++++++|.|++|+|++||...+. +..+...+++|. .+| +.++|+.|+|||+|||++.+.
T Consensus 243 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~-~vd-~~~~Ts~~~IyA~GD~~~~~~l 320 (466)
T PRK06115 243 AGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGM-LAN-DHHRTSVPGVWVIGDVTSGPML 320 (466)
T ss_pred EcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCE-EEC-CCeecCCCCEEEeeecCCCccc
Confidence 43 33 232 2 35789999999999999985442 232222355674 566 578899999999999997644
Q ss_pred --CccHHHHHHHHHhhcc
Q 016088 376 --GAAADAQNIADHINSI 391 (395)
Q Consensus 376 --~a~~~a~~~a~~i~~~ 391 (395)
.|..||+.++++|.+.
T Consensus 321 a~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 321 AHKAEDEAVACIERIAGK 338 (466)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 8999999999999864
No 36
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-32 Score=234.55 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=211.1
Q ss_pred CCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCc-eeeccccccccC---CCCCCCCCCCC
Q 016088 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDR-LRLHLAKQFCQL---PHLPFPSSYPM 76 (395)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~-l~~~~~~~~~~~---~~~~~~~~~~~ 76 (395)
+....+||.+|||||..|+++|++++++|.++.++|..-.+||++- ..+.|. +..+.....-.+ ..+.++.....
T Consensus 15 a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 15 AADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred cccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 3344589999999999999999999999999999998878898764 333322 222211111111 11112111111
Q ss_pred CC-------CHHHHHHHHHHHHH----hcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEee
Q 016088 77 FV-------SRAQFIEYLDHYVS----HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVAS 145 (395)
Q Consensus 77 ~~-------~~~~~~~~l~~~~~----~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAt 145 (395)
-. .+......|....+ +..++. .. .+..-+ ..+...|...++.. ..++++++++|+
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~--i~-G~a~f~----~~~~v~V~~~d~~~------~~Ytak~iLIAt 161 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKL--IE-GRARFV----SPGEVEVEVNDGTK------IVYTAKHILIAT 161 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhhccccceeE--Ee-eeEEEc----CCCceEEEecCCee------EEEecceEEEEe
Confidence 11 22222333322222 222221 11 111111 23444566666422 679999999999
Q ss_pred cCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccch
Q 016088 146 GETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSR 225 (395)
Q Consensus 146 G~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~ 225 (395)
| .+|.+|.|||.+. .+.+..+.+.+++ +|+++|+|+|++|+|+|..++.+|.+++++.|.. .+|-.
T Consensus 162 G--g~p~~PnIpG~E~----------gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~ 227 (478)
T KOG0405|consen 162 G--GRPIIPNIPGAEL----------GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRG 227 (478)
T ss_pred C--CccCCCCCCchhh----------ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcc
Confidence 9 8999999999874 3666777777776 9999999999999999999999999999999987 33222
Q ss_pred hhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ce
Q 016088 226 EMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IE 303 (395)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~ 303 (395)
++ +.+++.+.+.++..+|+++++ ++
T Consensus 228 FD-----------------------------------------------------~~i~~~v~~~~~~~ginvh~~s~~~ 254 (478)
T KOG0405|consen 228 FD-----------------------------------------------------EMISDLVTEHLEGRGINVHKNSSVT 254 (478)
T ss_pred hh-----------------------------------------------------HHHHHHHHHHhhhcceeecccccce
Confidence 22 222333456677788999998 55
Q ss_pred EEeCC--e---EEecCCcEEeCcEEEEccCCCCCccccccCCCCc-cCCCCCCCCCCCCcccCCCCeEEEecccccc---
Q 016088 304 SIRGN--E---VIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL--- 374 (395)
Q Consensus 304 ~~~~~--~---v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~--- 374 (395)
++... + +..+.|+...+|.++||+|+.||+..+..+..++ .++.|.+++| ++++|+.|+||++||+++-+
T Consensus 255 ~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LT 333 (478)
T KOG0405|consen 255 KVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLT 333 (478)
T ss_pred eeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecc
Confidence 55443 1 4445666667999999999999998776555454 4888999999 78889999999999998863
Q ss_pred cCccHHHHHHHHHhhccc
Q 016088 375 YGAAADAQNIADHINSIL 392 (395)
Q Consensus 375 ~~a~~~a~~~a~~i~~~l 392 (395)
..|...++.+++.+-+..
T Consensus 334 PVAiaagr~la~rlF~~~ 351 (478)
T KOG0405|consen 334 PVAIAAGRKLANRLFGGG 351 (478)
T ss_pred hHHHhhhhhHHHHhhcCC
Confidence 388889998888876643
No 37
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2.8e-32 Score=258.73 Aligned_cols=297 Identities=14% Similarity=0.148 Sum_probs=191.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc-CC---CCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-LP---HLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ 81 (395)
+||++|||||++|..+|.. ..|.+|+|||++ .+||++. ..+.|...+........ .. .+..... .......
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 4899999999999998876 359999999985 5777654 33433322211111110 00 0000000 0112344
Q ss_pred HHHHHHHHHHHh-------------cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 82 QFIEYLDHYVSH-------------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 82 ~~~~~l~~~~~~-------------~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
++.++.....++ .++++ +.+ +..-++ .. +|.+.++ ..++||+||+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~a~~~~----~~--~V~v~~g--------~~~~~d~lViATG-- 137 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDV--YRG-HARFIG----PK--TLRTGDG--------EEITADQVVIAAG-- 137 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEE--EEE-EEEEec----CC--EEEECCC--------CEEEeCEEEEcCC--
Confidence 444444333222 23331 222 121111 12 3665543 6789999999999
Q ss_pred CCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhH
Q 016088 149 SNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV 228 (395)
Q Consensus 149 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~ 228 (395)
++|+.|+++|.+.. .+....+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+++ .++|..+.
T Consensus 138 s~p~~p~i~g~~~~--------~~~~~~~~~~l~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~ 207 (451)
T PRK07846 138 SRPVIPPVIADSGV--------RYHTSDTIMRLPE-LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD 207 (451)
T ss_pred CCCCCCCCCCcCCc--------cEEchHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH
Confidence 89999998886532 2223223322222 37899999999999999999999999999999988 44444333
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
++...+ .+.+ +.+++++.+ +++++
T Consensus 208 ~~~~~l-----------------------------------------------------~~l~-~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 208 DISERF-----------------------------------------------------TELA-SKRWDVRLGRNVVGVS 233 (451)
T ss_pred HHHHHH-----------------------------------------------------HHHH-hcCeEEEeCCEEEEEE
Confidence 222111 1222 245777776 77775
Q ss_pred CC--e--EEecCCcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---Ccc
Q 016088 307 GN--E--VIFENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAA 378 (395)
Q Consensus 307 ~~--~--v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~ 378 (395)
.+ + +.+.+|+++++|.|++|+|++||.+.+. +..+...+++|++.+| ++++|+.|||||+|||++... .|.
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~ 312 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVAN 312 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHH
Confidence 43 2 5567888999999999999999985442 3332345788999999 567799999999999987533 899
Q ss_pred HHHHHHHHHhhcc
Q 016088 379 ADAQNIADHINSI 391 (395)
Q Consensus 379 ~~a~~~a~~i~~~ 391 (395)
.||+.+++||...
T Consensus 313 ~~g~~~a~ni~~~ 325 (451)
T PRK07846 313 HEARVVQHNLLHP 325 (451)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999854
No 38
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.4e-32 Score=260.53 Aligned_cols=302 Identities=18% Similarity=0.199 Sum_probs=194.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccc----cccCCCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (395)
+|||+|||||++|+++|..|++.|.+|+|||+ ..+||+|.. .+++...+..... ......+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 58999999999999999999999999999999 678998863 2222111110000 000111111101 1234566
Q ss_pred HHHHHHHHHHHhcCCcc--------ee-eeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 82 QFIEYLDHYVSHFNIVP--------SI-RYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~--------~i-~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
++.++.++..+.+.... .+ .+...+..++ .. .+.+ ++ ..++||+||+||| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~----~~--~v~v-~~--------~~~~~d~lIiATG--s~-- 141 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVD----PN--TVEV-NG--------ERIEAKNIVIATG--SR-- 141 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEcc----CC--EEEE-Cc--------EEEEeCEEEEeCC--CC--
Confidence 67666665554331110 00 1111121111 12 2444 22 7899999999999 44
Q ss_pred CCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHH
Q 016088 153 TPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGL 232 (395)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~ 232 (395)
.|.++|..... ...++++....... ..+++++|||+|.+|+|+|..|++.|.+|+++.+.+ .++|..+.++..
T Consensus 142 ~p~ipg~~~~~-----~~~~~~~~~~~~~~-~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~ 214 (460)
T PRK06292 142 VPPIPGVWLIL-----GDRLLTSDDAFELD-KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSK 214 (460)
T ss_pred CCCCCCCcccC-----CCcEECchHHhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHH
Confidence 44555553220 11233333322222 247899999999999999999999999999999988 555544333322
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--
Q 016088 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 308 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~-- 308 (395)
.+ .+.+++. |+++.+ +.+++.+
T Consensus 215 ~~-----------------------------------------------------~~~l~~~-I~i~~~~~v~~i~~~~~ 240 (460)
T PRK06292 215 QA-----------------------------------------------------QKILSKE-FKIKLGAKVTSVEKSGD 240 (460)
T ss_pred HH-----------------------------------------------------HHHHhhc-cEEEcCCEEEEEEEcCC
Confidence 22 3445556 888776 7777643
Q ss_pred -eEEe--cCC--cEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccH
Q 016088 309 -EVIF--ENG--HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAA 379 (395)
Q Consensus 309 -~v~~--~~g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~ 379 (395)
.+.+ .++ +++++|.|++|+|++||.+.+. +..+...+++|++.+| ++++|+.|+|||+|||++.+ ..|..
T Consensus 241 ~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~~ 319 (460)
T PRK06292 241 EKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAAD 319 (460)
T ss_pred ceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHHH
Confidence 3443 233 5689999999999999996543 3332335778999999 57788999999999998764 48999
Q ss_pred HHHHHHHHhhcc
Q 016088 380 DAQNIADHINSI 391 (395)
Q Consensus 380 ~a~~~a~~i~~~ 391 (395)
||+.+|.+|.+.
T Consensus 320 qg~~aa~~i~~~ 331 (460)
T PRK06292 320 EGRIAAENAAGD 331 (460)
T ss_pred HHHHHHHHhcCC
Confidence 999999999863
No 39
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.5e-32 Score=259.60 Aligned_cols=307 Identities=14% Similarity=0.199 Sum_probs=196.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEec------CCCCCcccccC-CCCcee-eccccccccC----CCCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILER------ENCYASIWKKY-SYDRLR-LHLAKQFCQL----PHLPFPSSY 74 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~------~~~~gg~~~~~-~~~~l~-~~~~~~~~~~----~~~~~~~~~ 74 (395)
+||++|||||++|+++|..+++.|.+|+|||+ ...+||+|... +.+... .........+ ..+.....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 68999999999999999999999999999998 35678877542 222211 1110000000 00000000
Q ss_pred CCCCCHHHHH-----------HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEE
Q 016088 75 PMFVSRAQFI-----------EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 75 ~~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
..-....++. ..+....+..+++ ....++..++... ..++|.+..+.+ ..++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~~~~~~~~--~~~~v~v~~~~~------~~~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKIT---VLKGRGSFVGKTD--AGYEIKVTGEDE------TVITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE---EEEEEEEEecCCC--CCCEEEEecCCC------eEEEeCEEEE
Confidence 0001122222 2233344445655 3444555555433 456676654322 6899999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCccc
Q 016088 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVL 223 (395)
Q Consensus 144 AtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~ 223 (395)
||| +.|..++..+.. +..++..+........+++++|||+|.+|+|+|..+.+.|.+|+++.+++ .++
T Consensus 152 ATG--s~p~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l 219 (475)
T PRK06327 152 ATG--SEPRHLPGVPFD---------NKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFL 219 (475)
T ss_pred eCC--CCCCCCCCCCCC---------CceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccC
Confidence 999 677544322111 12222222111112247899999999999999999999999999999988 444
Q ss_pred chhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--
Q 016088 224 SREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-- 301 (395)
Q Consensus 224 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 301 (395)
|..+..+... +.+.+++.+++++.+
T Consensus 220 ~~~d~~~~~~-----------------------------------------------------~~~~l~~~gi~i~~~~~ 246 (475)
T PRK06327 220 AAADEQVAKE-----------------------------------------------------AAKAFTKQGLDIHLGVK 246 (475)
T ss_pred CcCCHHHHHH-----------------------------------------------------HHHHHHHcCcEEEeCcE
Confidence 4433222221 234455678888887
Q ss_pred ceEEeCC--e--EEecC--C--cEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEecccc
Q 016088 302 IESIRGN--E--VIFEN--G--HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 372 (395)
Q Consensus 302 v~~~~~~--~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 372 (395)
+.+++.+ . +.+.+ | +++++|.|++|+|++|+.+.+. +..+...+++|++.+| +.++|+.|+|||+|||++
T Consensus 247 v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~ 325 (475)
T PRK06327 247 IGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVR 325 (475)
T ss_pred EEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccC
Confidence 7777643 2 44444 3 4689999999999999986443 3332345788999999 567799999999999987
Q ss_pred ccc---CccHHHHHHHHHhhcc
Q 016088 373 GLY---GAAADAQNIADHINSI 391 (395)
Q Consensus 373 ~~~---~a~~~a~~~a~~i~~~ 391 (395)
.+. .|..||..+|++|.+.
T Consensus 326 ~~~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 326 GPMLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred CcchHHHHHHHHHHHHHHHcCC
Confidence 543 8999999999999864
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=2e-32 Score=262.41 Aligned_cols=307 Identities=16% Similarity=0.193 Sum_probs=197.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC--------CCCccc-ccCCCCceeecccccccc-C----CCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ-L----PHLPFPS 72 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~--------~~gg~~-~~~~~~~l~~~~~~~~~~-~----~~~~~~~ 72 (395)
.|||+||||||+|+++|..|+++|.+|+|||+.. .+||++ +..+++...+........ + ..+...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999631 378875 344444322111110000 0 001110
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeC----CCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 73 SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE----ATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
...-....++.++++..++.++... ....++..++.-. ..+.++|...+.. +. ..++||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~---~~--~~i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNS---QE--ETITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCC---Cc--eEEECCEEEEecC--
Confidence 0112455677777776665553322 2222111111100 0122235443311 11 6799999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh
Q 016088 149 SNPFTPD-IRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (395)
Q Consensus 149 ~~p~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (395)
+.|..|. ++|.+.+ .+.+.+...... .+++++|||+|.+|+|+|..|++.|.+||++.++. .+|..+
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~--~l~~~d 221 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSI--PLRGFD 221 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc--ccccCC
Confidence 7888874 7876543 222223322222 36799999999999999999999999999998743 334333
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEE
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~ 305 (395)
..+... +.+.+++.+|+++.+ +.++
T Consensus 222 ~~~~~~-----------------------------------------------------l~~~l~~~GV~i~~~~~v~~v 248 (499)
T PTZ00052 222 RQCSEK-----------------------------------------------------VVEYMKEQGTLFLEGVVPINI 248 (499)
T ss_pred HHHHHH-----------------------------------------------------HHHHHHHcCCEEEcCCeEEEE
Confidence 322222 234466678888887 5566
Q ss_pred eCC----eEEecCCcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-c---cC
Q 016088 306 RGN----EVIFENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-L---YG 376 (395)
Q Consensus 306 ~~~----~v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-~---~~ 376 (395)
+.. .+.+.+|+++++|.|++|+|++||...+. ...+...+++|++.+++. +|+.|+|||+|||+.+ + ..
T Consensus 249 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~~l~~~ 326 (499)
T PTZ00052 249 EKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRPELTPV 326 (499)
T ss_pred EEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCcccHHH
Confidence 532 35667888899999999999999985442 344334577788666633 8999999999999853 2 38
Q ss_pred ccHHHHHHHHHhhcc
Q 016088 377 AAADAQNIADHINSI 391 (395)
Q Consensus 377 a~~~a~~~a~~i~~~ 391 (395)
|..||+.+|++|...
T Consensus 327 A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 327 AIKAGILLARRLFKQ 341 (499)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999999763
No 41
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1e-31 Score=256.37 Aligned_cols=303 Identities=16% Similarity=0.134 Sum_probs=194.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC--------CCCcccc-cCCCCceeeccccccccC----CCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--------CYASIWK-KYSYDRLRLHLAKQFCQL----PHLPFPSS 73 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~--------~~gg~~~-~~~~~~l~~~~~~~~~~~----~~~~~~~~ 73 (395)
+|||+|||+|++|+.+|..+++.|.+|++||+.. .+||+|. ..+.|...+......... ..+.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 4788764 344543332211111110 00000000
Q ss_pred CCCCCCHHHHHHHH-----------HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEE
Q 016088 74 YPMFVSRAQFIEYL-----------DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (395)
Q Consensus 74 ~~~~~~~~~~~~~l-----------~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vV 142 (395)
.........+.++. ....+..+++. +.....-++ .+...|...++.. ..++||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g~~------~~~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKGKE------KIYSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCCCc------eEEEeCEEE
Confidence 00011222222222 22334445442 222222222 2333343323221 679999999
Q ss_pred EeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcc
Q 016088 143 VASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHV 222 (395)
Q Consensus 143 lAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~ 222 (395)
+||| ++|+.|+++|.++. .+.+.+...... .+++++|||+|.+|+|+|..|++.|.+|+++.|. ..
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc
Confidence 9999 89999999887543 222222322222 3678999999999999999999999999999874 44
Q ss_pred cchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC-
Q 016088 223 LSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG- 301 (395)
Q Consensus 223 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 301 (395)
+|..+.++...+ .+.+++.+|+++.+
T Consensus 215 l~~~d~~~~~~l-----------------------------------------------------~~~L~~~gV~i~~~~ 241 (484)
T TIGR01438 215 LRGFDQDCANKV-----------------------------------------------------GEHMEEHGVKFKRQF 241 (484)
T ss_pred ccccCHHHHHHH-----------------------------------------------------HHHHHHcCCEEEeCc
Confidence 454444333322 34466678888887
Q ss_pred -ceEEeCC--e--EEecCC---cEEeCcEEEEccCCCCCccccc-cCCCCccCC-CCCCCCCCCCcccCCCCeEEEeccc
Q 016088 302 -IESIRGN--E--VIFENG---HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLND-DGIPKQSYPNHWKGKNGLYCVGLSR 371 (395)
Q Consensus 302 -v~~~~~~--~--v~~~~g---~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~vya~Gd~~ 371 (395)
+.+++.. . +.+.++ +++++|.|++|+|+.||...+. ...+...++ +|.+.+| +.++|+.|+|||+|||+
T Consensus 242 ~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~ 320 (484)
T TIGR01438 242 VPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDIL 320 (484)
T ss_pred eEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEec
Confidence 5566532 2 555565 3789999999999999996543 333222343 5889998 57789999999999997
Q ss_pred cc----ccCccHHHHHHHHHhhc
Q 016088 372 KG----LYGAAADAQNIADHINS 390 (395)
Q Consensus 372 ~~----~~~a~~~a~~~a~~i~~ 390 (395)
.. ...|..||+.++++|..
T Consensus 321 ~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 321 EDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CCCccchHHHHHHHHHHHHHHhc
Confidence 53 23789999999999975
No 42
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3e-32 Score=272.99 Aligned_cols=282 Identities=20% Similarity=0.196 Sum_probs=204.5
Q ss_pred CeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
.+|+|||+|++|+.+|..|.++ +++|+||++++.++ |....+.. . +.. ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--~------------~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--Y------------FSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--h------------HcC-CCHHHc
Confidence 4899999999999999999764 46999999988543 22211110 0 000 122333
Q ss_pred HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016088 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (395)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~ 163 (395)
.....++.++.++++ +.++.|++++... ..|.+.++ ..+.||+||+||| +.|+.|+++|.+..
T Consensus 62 ~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G--------~~i~yD~LVIATG--s~p~~p~ipG~~~~- 124 (847)
T PRK14989 62 SLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG--------RTVFYDKLIMATG--SYPWIPPIKGSETQ- 124 (847)
T ss_pred cCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC--------cEEECCEEEECCC--CCcCCCCCCCCCCC-
Confidence 333345556678776 8889999998643 23666554 6799999999999 88999999987753
Q ss_pred cCCCCCcceeecccCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh-hHHHHHHHhhc
Q 016088 164 SSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRY 237 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~ 237 (395)
.++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|+. +......
T Consensus 125 -------~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~---- 192 (847)
T PRK14989 125 -------DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQ---- 192 (847)
T ss_pred -------CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHH----
Confidence 23322222111 11247899999999999999999999999999999988 444432 2221111
Q ss_pred CChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC------e
Q 016088 238 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------E 309 (395)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~------~ 309 (395)
+.+.+++.+|+++.+ ++++..+ .
T Consensus 193 -------------------------------------------------l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~ 223 (847)
T PRK14989 193 -------------------------------------------------LRRKIESMGVRVHTSKNTLEIVQEGVEARKT 223 (847)
T ss_pred -------------------------------------------------HHHHHHHCCCEEEcCCeEEEEEecCCCceEE
Confidence 245577788999988 7777542 3
Q ss_pred EEecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-------ccCccHHHH
Q 016088 310 VIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQ 382 (395)
Q Consensus 310 v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~ 382 (395)
+.++||+++++|.||+|+|++||. .+....+...+++|++.|| +.++|+.|+|||+|||+.. +..+..+|+
T Consensus 224 v~~~dG~~i~~D~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~ 301 (847)
T PRK14989 224 MRFADGSELEVDFIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQ 301 (847)
T ss_pred EEECCCCEEEcCEEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHH
Confidence 778899999999999999999998 4655553446788999999 6788999999999999753 237889999
Q ss_pred HHHHHhhcc
Q 016088 383 NIADHINSI 391 (395)
Q Consensus 383 ~~a~~i~~~ 391 (395)
.+|++|.+.
T Consensus 302 vaa~~i~g~ 310 (847)
T PRK14989 302 VAVDHLLGS 310 (847)
T ss_pred HHHHHhcCC
Confidence 999999764
No 43
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1.1e-31 Score=254.53 Aligned_cols=273 Identities=17% Similarity=0.220 Sum_probs=187.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||++|+++|..|+++|++|+|||+.+.+||.+... ++ .+....++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHHHH
Confidence 46899999999999999999999999999999998888765321 11 1111235555
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++++++++ +.++.+. . .+.+.+ ....||+||+|||. ..|+.|+++|.+..
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v~--------~--~v~~~~---------~~~~yd~viiAtGa-~~p~~~~ipG~~~~--- 242 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLVG--------K--TATLEE---------LFSQYDAVFIGTGA-GLPKLMNIPGEELC--- 242 (449)
T ss_pred HHHHHHHhCCcEE--EeCCccC--------C--cCCHHH---------HHhhCCEEEEeCCC-CCCCcCCCCCCCCC---
Confidence 5555566777665 6665440 1 133322 22368999999994 26888888887532
Q ss_pred CCCCcceeecccCC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHH
Q 016088 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (395)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (395)
.+++..++. ......+++++|||+|.+|+|+|..+.+.|.+||++.|++...+|...
T Consensus 243 -----gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~---- 313 (449)
T TIGR01316 243 -----GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARV---- 313 (449)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCH----
Confidence 233322211 111235799999999999999999999999999999987621111110
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC--
Q 016088 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG-- 307 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~-- 307 (395)
...+.+++.+|+++.+ +.++..
T Consensus 314 ------------------------------------------------------~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 314 ------------------------------------------------------EEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred ------------------------------------------------------HHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 0112344456666554 444432
Q ss_pred C----eEEec---------CC-----------cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCC
Q 016088 308 N----EVIFE---------NG-----------HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNG 363 (395)
Q Consensus 308 ~----~v~~~---------~g-----------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 363 (395)
+ +|.+. +| ..+++|.||+|+|+.|+. .++...+...+++|.+.+| +.++|+.|+
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~ 417 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPG 417 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCC
Confidence 1 12322 22 268999999999999997 4555443445778999998 567899999
Q ss_pred eEEEeccccccc---CccHHHHHHHHHhhccc
Q 016088 364 LYCVGLSRKGLY---GAAADAQNIADHINSIL 392 (395)
Q Consensus 364 vya~Gd~~~~~~---~a~~~a~~~a~~i~~~l 392 (395)
|||+||++.++. .|+.+|+.+|.+|.++|
T Consensus 418 VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 418 VFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999999987643 89999999999998875
No 44
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-31 Score=260.45 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=193.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecC-CCCCcccc-cCCCCceeecccc------------ccccCCCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NCYASIWK-KYSYDRLRLHLAK------------QFCQLPHLPFP 71 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~-~~~gg~~~-~~~~~~l~~~~~~------------~~~~~~~~~~~ 71 (395)
.+|||+|||+|++|..+|..++++|.+|+|||+. ..+||++- ..+.|...+.... ..+.+...+++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 4789999999999999999999999999999974 46888654 3333322111000 01111100000
Q ss_pred ----------CCC--CCCCCHHHHHHHHHHHHHhcC--Ccc-----eeeeeeeEEEeEEeCCCCcE----EEEEeecCCC
Q 016088 72 ----------SSY--PMFVSRAQFIEYLDHYVSHFN--IVP-----SIRYQRSVESASYDEATNMW----NVKASNLLSP 128 (395)
Q Consensus 72 ----------~~~--~~~~~~~~~~~~l~~~~~~~~--~~~-----~i~~~~~V~~i~~~~~~~~~----~v~~~~~~~~ 128 (395)
... ..-.....+.++.+...++.. +.. .+....+.+++.... +.| +|.... .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~~~~v~v~~-~g- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVDKNTIKSEK-SG- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEecCCeEEEcc-CC-
Confidence 000 011244455555544433321 000 001111222332211 111 233221 11
Q ss_pred CceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhh
Q 016088 129 GRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH 208 (395)
Q Consensus 129 ~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~ 208 (395)
..++||+||+||| ++|..|++.+.+.. .++.+.+...... .+++++|||+|.+|+|+|..+++.
T Consensus 271 -----~~i~ad~lIIATG--S~P~~P~~~~~~~~--------~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~ 334 (659)
T PTZ00153 271 -----KEFKVKNIIIATG--STPNIPDNIEVDQK--------SVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTAL 334 (659)
T ss_pred -----EEEECCEEEEcCC--CCCCCCCCCCCCCC--------cEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhC
Confidence 6789999999999 88888876554432 3444443333333 378999999999999999999999
Q ss_pred cCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhh
Q 016088 209 AAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTC 288 (395)
Q Consensus 209 g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (395)
|.+||++.+.+ .++|..+.++...+ .
T Consensus 335 G~eVTLIe~~~-~ll~~~d~eis~~l-----------------------------------------------------~ 360 (659)
T PTZ00153 335 GSEVVSFEYSP-QLLPLLDADVAKYF-----------------------------------------------------E 360 (659)
T ss_pred CCeEEEEeccC-cccccCCHHHHHHH-----------------------------------------------------H
Confidence 99999999988 55555444333322 2
Q ss_pred hh-hcCCcEEEecC--ceEEeCCe----EEe--cC-------C--------cEEeCcEEEEccCCCCCccccc-cCCCCc
Q 016088 289 EK-IKSGQIQVLPG--IESIRGNE----VIF--EN-------G--------HSHHFDSIVFCTGFKRSTNVWL-KGDDSM 343 (395)
Q Consensus 289 ~~-~~~~~i~~~~~--v~~~~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~~~~~~~~-~~~~~~ 343 (395)
+. +++.+|+++.+ +..++.+. +.+ .+ + +++++|.|++|+|++||...+. ... ++
T Consensus 361 ~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~-gi 439 (659)
T PTZ00153 361 RVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKL-KI 439 (659)
T ss_pred HHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhc-CC
Confidence 22 34567888888 77776432 332 21 1 2689999999999999996553 333 33
Q ss_pred cCCCCCCCCCCCCcccC------CCCeEEEeccccccc---CccHHHHHHHHHhhcc
Q 016088 344 LNDDGIPKQSYPNHWKG------KNGLYCVGLSRKGLY---GAAADAQNIADHINSI 391 (395)
Q Consensus 344 ~~~~g~~~~~~~~~~~~------~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~~~ 391 (395)
...+|++.|| ++++++ .|+|||+|||++.+. .|..||+.++++|.+.
T Consensus 440 ~~~~G~I~VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 440 QMKRGFVSVD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred cccCCEEeEC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 3345899999 566665 699999999987644 8899999999999764
No 45
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-31 Score=255.02 Aligned_cols=278 Identities=19% Similarity=0.212 Sum_probs=188.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+||+|||||++|+++|..|+++|++|+|+|+.+.+||.+... ++.+. .+.+++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~--------l~~~~~~~ 195 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFR--------LPKETVVK 195 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCcc--------CCccHHHH
Confidence 46899999999999999999999999999999998888876421 11111 12234666
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
+..+.++++++++ ++++.+. .. +...+. . ..+.||.||+|||. ..|+.++++|.+..
T Consensus 196 ~~~~~~~~~gv~i--~~~~~v~--------~~--v~~~~~----~---~~~~~d~viiAtGa-~~~~~l~ipG~~~~--- 252 (464)
T PRK12831 196 KEIENIKKLGVKI--ETNVVVG--------KT--VTIDEL----L---EEEGFDAVFIGSGA-GLPKFMGIPGENLN--- 252 (464)
T ss_pred HHHHHHHHcCCEE--EcCCEEC--------Cc--CCHHHH----H---hccCCCEEEEeCCC-CCCCCCCCCCcCCc---
Confidence 6666777778776 7777551 11 222221 0 34579999999994 26888888887642
Q ss_pred CCCCcceeecccCC-------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHH
Q 016088 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGL 232 (395)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~ 232 (395)
.++...++. ......+++|+|||+|.+|+|+|..+.+.|.+|+++.|++..-+|.....+
T Consensus 253 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-- 325 (464)
T PRK12831 253 -----GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-- 325 (464)
T ss_pred -----CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH--
Confidence 233222221 112245899999999999999999999999999999987632222221110
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC--C
Q 016088 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--N 308 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~--~ 308 (395)
+.+.+.+|+++.. +.++.. +
T Consensus 326 --------------------------------------------------------~~a~~eGV~i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 326 --------------------------------------------------------HHAKEEGVIFDLLTNPVEILGDEN 349 (464)
T ss_pred --------------------------------------------------------HHHHHcCCEEEecccceEEEecCC
Confidence 1112234444333 233221 1
Q ss_pred ----eEEec------------------CCc--EEeCcEEEEccCCCCCccccccC-CCCccCCCCCCCCCCCCcccCCCC
Q 016088 309 ----EVIFE------------------NGH--SHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGKNG 363 (395)
Q Consensus 309 ----~v~~~------------------~g~--~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~ 363 (395)
++.+. +|+ .+++|.||+|+|+.|+. .+... .+...+++|.+.+|..+++|+.|+
T Consensus 350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pg 428 (464)
T PRK12831 350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEG 428 (464)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCC
Confidence 11111 232 58999999999999998 45443 323457789999995558899999
Q ss_pred eEEEeccccccc---CccHHHHHHHHHhhcccC
Q 016088 364 LYCVGLSRKGLY---GAAADAQNIADHINSILS 393 (395)
Q Consensus 364 vya~Gd~~~~~~---~a~~~a~~~a~~i~~~l~ 393 (395)
|||+||+..++. .|..+|+.+|.+|.++|.
T Consensus 429 VfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 429 VFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999987643 899999999999999875
No 46
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=254.45 Aligned_cols=288 Identities=15% Similarity=0.202 Sum_probs=194.4
Q ss_pred eEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 9 EVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
+|+|||||++|+++|..|++.+ .+|+|||+++.++ |... .++... ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEe----ccccCCHHHhhcC
Confidence 6999999999999999999875 4899999988542 1000 000000 0111222344444
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+.++++++++ +.+++|++++.++ ..+.+....+ + .. ..++||+||+||| ++|..|+++|.+..
T Consensus 62 ~~~~~~~~gv~~--~~~~~V~~id~~~--~~v~~~~~~~-~--~~--~~~~yd~lviAtG--~~~~~~~i~g~~~~---- 126 (444)
T PRK09564 62 TPEEFIKSGIDV--KTEHEVVKVDAKN--KTITVKNLKT-G--SI--FNDTYDKLMIATG--ARPIIPPIKNINLE---- 126 (444)
T ss_pred CHHHHHHCCCeE--EecCEEEEEECCC--CEEEEEECCC-C--CE--EEecCCEEEECCC--CCCCCCCCCCcCCC----
Confidence 445566677765 8899999998765 4444432111 1 10 3344999999999 78888888887532
Q ss_pred CCCcceeecccCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccch-hhHHHHHHHhhcC
Q 016088 167 TGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSR-EMVYLGLVLLRYV 238 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~-------~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~-~~~~~~~~~~~~~ 238 (395)
.+++...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|. .+..+..
T Consensus 127 ----~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~------ 195 (444)
T PRK09564 127 ----NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITD------ 195 (444)
T ss_pred ----CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHH------
Confidence 23333322111 12347899999999999999999999999999999877 33332 1111111
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe---EEec
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE---VIFE 313 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~---v~~~ 313 (395)
.+.+.+++.+++++.+ +.+++.++ ....
T Consensus 196 -----------------------------------------------~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~ 228 (444)
T PRK09564 196 -----------------------------------------------VMEEELRENGVELHLNEFVKSLIGEDKVEGVVT 228 (444)
T ss_pred -----------------------------------------------HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe
Confidence 1234456677888877 77776542 2223
Q ss_pred CCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-------------ccCccHH
Q 016088 314 NGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAAD 380 (395)
Q Consensus 314 ~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~ 380 (395)
++.++++|.+++|+|+.|+.+ +++..+...+++|++.+| +.++|+.|||||+|||+.. ...|..|
T Consensus 229 ~~~~i~~d~vi~a~G~~p~~~-~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~q 306 (444)
T PRK09564 229 DKGEYEADVVIVATGVKPNTE-FLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKL 306 (444)
T ss_pred CCCEEEcCEEEECcCCCcCHH-HHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHH
Confidence 455799999999999999974 555543334678999999 5667899999999999753 1278899
Q ss_pred HHHHHHHhhcc
Q 016088 381 AQNIADHINSI 391 (395)
Q Consensus 381 a~~~a~~i~~~ 391 (395)
|+.+|+||.+.
T Consensus 307 g~~~a~ni~g~ 317 (444)
T PRK09564 307 GRMVGENLAGR 317 (444)
T ss_pred HHHHHHHhcCC
Confidence 99999999864
No 47
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=6.5e-31 Score=251.87 Aligned_cols=302 Identities=16% Similarity=0.194 Sum_probs=195.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeecccccccc----CCCCCCCCCCCCCCCHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSRAQ 82 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (395)
|||+|||||++|+++|..|+++|.+|+|||+ +.+||+|.. .+++...+......+. ...+..... ....+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHHH
Confidence 8999999999999999999999999999999 788998753 3333211111110000 000110000 00112222
Q ss_pred HHHH-----------HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 83 FIEY-----------LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 83 ~~~~-----------l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
+.+. +.+..++.+++. .. .++..++ ...+.+...++ . ..++||+||+||| +.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-g~~~~~~----~~~~~v~~~~g----~---~~~~~d~lVlAtG--~~p 143 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTV--IK-GEAKFLD----PGTVLVTGENG----E---ETLTAKNIIIATG--SRP 143 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEcc----CCEEEEecCCC----c---EEEEeCEEEEcCC--CCC
Confidence 2222 223344445553 33 3333222 24455554332 1 5799999999999 788
Q ss_pred CCCCCC-CccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHH
Q 016088 152 FTPDIR-GLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 152 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (395)
+.|+++ +.+. ..+.+..+..... ..+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|..+..+
T Consensus 144 ~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~ 213 (461)
T TIGR01350 144 RSLPGPFDFDG--------EVVITSTGALNLK-EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDAEV 213 (461)
T ss_pred CCCCCCCCCCC--------ceEEcchHHhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCHHH
Confidence 877765 2221 1233322222222 237899999999999999999999999999999987 4444333222
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC-
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG- 307 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~- 307 (395)
... +.+.+++.+++++.+ +.+++.
T Consensus 214 ~~~-----------------------------------------------------~~~~l~~~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 214 SKV-----------------------------------------------------VAKALKKKGVKILTNTKVTAVEKN 240 (461)
T ss_pred HHH-----------------------------------------------------HHHHHHHcCCEEEeCCEEEEEEEe
Confidence 221 234456678888887 776653
Q ss_pred -CeE--EecCC--cEEeCcEEEEccCCCCCccc-cccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCcc
Q 016088 308 -NEV--IFENG--HSHHFDSIVFCTGFKRSTNV-WLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAA 378 (395)
Q Consensus 308 -~~v--~~~~g--~~~~~D~vi~atG~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~ 378 (395)
+.+ .+.+| +++++|.||+|+|+.|+... ++...+...+++|++.+| +.++++.|+|||+|||+..+ ..|.
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~ 319 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVAS 319 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHH
Confidence 344 33466 47899999999999999853 234443445778999999 67788999999999998753 3889
Q ss_pred HHHHHHHHHhhcc
Q 016088 379 ADAQNIADHINSI 391 (395)
Q Consensus 379 ~~a~~~a~~i~~~ 391 (395)
.+|+.+|++|.+.
T Consensus 320 ~~g~~aa~~i~~~ 332 (461)
T TIGR01350 320 HEGIVAAENIAGK 332 (461)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999864
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=6.3e-31 Score=250.78 Aligned_cols=301 Identities=15% Similarity=0.210 Sum_probs=191.7
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc----CCCCCCCCC-CCCCCCHHH
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQ 82 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 82 (395)
+|+|||||++|+++|..+++.|.+|+|||+.+ +||++. ..+.|...+......+. ...+..... .....+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 79999999999999999999999999999875 666554 33333222111000000 000000000 000122333
Q ss_pred HHHHHHH-----------HHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 83 FIEYLDH-----------YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 83 ~~~~l~~-----------~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
+..+.++ ..++.+++ .+..++..++ ...+.|...++ . ..++||+||+||| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~----~---~~~~~d~lviATG--s~p 144 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK----E---EVVDAEQFIIAAG--SEP 144 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC----c---EEEECCEEEEeCC--CCC
Confidence 3333222 22333444 2333333332 24444554321 1 5799999999999 788
Q ss_pred CCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHH
Q 016088 152 FTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLG 231 (395)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~ 231 (395)
..|++++.+.. .++++.+...... .+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ .++|..+.++.
T Consensus 145 ~~~p~~~~~~~--------~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~ 214 (458)
T PRK06912 145 TELPFAPFDGK--------WIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIA 214 (458)
T ss_pred CCCCCCCCCCC--------eEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHH
Confidence 77776665432 2344333333332 37899999999999999999999999999999987 55554433322
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe
Q 016088 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE 309 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~ 309 (395)
.. +.+.+++.+|+++.+ +++++.+.
T Consensus 215 ~~-----------------------------------------------------l~~~L~~~GI~i~~~~~V~~i~~~~ 241 (458)
T PRK06912 215 HI-----------------------------------------------------LREKLENDGVKIFTGAALKGLNSYK 241 (458)
T ss_pred HH-----------------------------------------------------HHHHHHHCCCEEEECCEEEEEEEcC
Confidence 21 234466678888887 77776543
Q ss_pred --EEec-CC--cEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---CccHH
Q 016088 310 --VIFE-NG--HSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAAD 380 (395)
Q Consensus 310 --v~~~-~g--~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~ 380 (395)
+.+. +| .++++|.|++|+|++||.+.+. ...+...+++| +.+| ++++|+.|||||+||+++++. .|..+
T Consensus 242 ~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~ 319 (458)
T PRK06912 242 KQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHE 319 (458)
T ss_pred CEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHH
Confidence 4443 44 3689999999999999985442 33322335556 8888 577899999999999987643 89999
Q ss_pred HHHHHHHhhcc
Q 016088 381 AQNIADHINSI 391 (395)
Q Consensus 381 a~~~a~~i~~~ 391 (395)
|+.++.+|.+.
T Consensus 320 g~~aa~~~~g~ 330 (458)
T PRK06912 320 GTTAALHASGE 330 (458)
T ss_pred HHHHHHHHcCC
Confidence 99999999753
No 49
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.98 E-value=4.3e-31 Score=246.31 Aligned_cols=279 Identities=17% Similarity=0.276 Sum_probs=193.3
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
++|+|||||+||+++|..|.+. ..+|+||++++... |.... .+..+.......++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--------------l~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--------------LSHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--------------CcHHHhCCCCHHHhhc
Confidence 4899999999999999999886 45899999877321 11100 0000111123344443
Q ss_pred -HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 86 -~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
...++++++++++ +.+++|++++.+. . .+.+. + ..+.||+||+||| +.|..|+++|.+..
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~--~--~v~~~-~--------~~~~yd~LVlATG--~~~~~p~i~G~~~v-- 122 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA--Q--VVKSQ-G--------NQWQYDKLVLATG--ASAFVPPIPGRELM-- 122 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC--C--EEEEC-C--------eEEeCCEEEECCC--CCCCCCCCCCCceE--
Confidence 3456667778776 8899999998754 2 35543 2 7899999999999 78888888886532
Q ss_pred CCCCCcceeecccCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCC
Q 016088 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (395)
+......+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|... +
T Consensus 123 --------~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~~-----------~ 182 (377)
T PRK04965 123 --------LTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASLM-----------P 182 (377)
T ss_pred --------EEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchhC-----------C
Confidence 21111111 111247899999999999999999999999999999987 3333211 0
Q ss_pred hhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC----eEEec
Q 016088 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFE 313 (395)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~----~v~~~ 313 (395)
.. ....+.+.+++.+++++.+ +++++.+ .+.+.
T Consensus 183 ~~-----------------------------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~ 221 (377)
T PRK04965 183 PE-----------------------------------------VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD 221 (377)
T ss_pred HH-----------------------------------------HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEc
Confidence 00 0111234466678888876 7777654 36778
Q ss_pred CCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-------ccCccHHHHHHHH
Q 016088 314 NGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIAD 386 (395)
Q Consensus 314 ~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~~~a~ 386 (395)
+|+++++|.||+|+|.+|+. .+.+.. ++...+| +.+| +.++|+.|||||+|||+.. ...|..||+.+|+
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~-~l~~~~-gl~~~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~ 297 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNT-ALARRA-GLAVNRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAK 297 (377)
T ss_pred CCcEEECCEEEECcCCCcch-HHHHHC-CCCcCCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHH
Confidence 99999999999999999997 454444 3333456 7788 5778899999999999752 2258899999999
Q ss_pred Hhhcc
Q 016088 387 HINSI 391 (395)
Q Consensus 387 ~i~~~ 391 (395)
||.+.
T Consensus 298 n~~g~ 302 (377)
T PRK04965 298 NLLGQ 302 (377)
T ss_pred HhcCC
Confidence 99864
No 50
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.98 E-value=2.8e-31 Score=248.81 Aligned_cols=284 Identities=16% Similarity=0.213 Sum_probs=189.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC--CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~--~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
..+|+|||||+||+++|..|++++. +|+||++++... |.+. ..++.+.. ...... ....+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~---~~~~~~-~~~~~----- 64 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLL---EDSPQL-QQVLP----- 64 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHC---CCCccc-cccCC-----
Confidence 3589999999999999999999876 799999887432 2111 01110000 000000 00001
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
.++..+.+++. +.++.|+.++... . .|.+.++ ..+.||+||+||| ++|+.+++++....
T Consensus 65 ---~~~~~~~~i~~--~~g~~V~~id~~~--~--~v~~~~g--------~~~~yd~LViATG--s~~~~~p~~~~~~~-- 123 (396)
T PRK09754 65 ---ANWWQENNVHL--HSGVTIKTLGRDT--R--ELVLTNG--------ESWHWDQLFIATG--AAARPLPLLDALGE-- 123 (396)
T ss_pred ---HHHHHHCCCEE--EcCCEEEEEECCC--C--EEEECCC--------CEEEcCEEEEccC--CCCCCCCCCCcCCC--
Confidence 12233456665 8888999998754 2 3666554 6799999999999 77776665543221
Q ss_pred CCCCCcceeecccCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCC
Q 016088 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (395)
.++......+ .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ .++++...
T Consensus 124 ------~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~----------- 185 (396)
T PRK09754 124 ------RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAP----------- 185 (396)
T ss_pred ------CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcC-----------
Confidence 2222211111 111247899999999999999999999999999999987 33332111
Q ss_pred hhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC---eEEecC
Q 016088 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN---EVIFEN 314 (395)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~---~v~~~~ 314 (395)
+.....+.+.+++.+|+++.+ +++++.+ .+.+.+
T Consensus 186 -----------------------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~ 224 (396)
T PRK09754 186 -----------------------------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQS 224 (396)
T ss_pred -----------------------------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECC
Confidence 001111234456678888877 7777653 256789
Q ss_pred CcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc------c------cCccHHHH
Q 016088 315 GHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG------L------YGAAADAQ 382 (395)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~------~------~~a~~~a~ 382 (395)
|+.+++|.||+++|.+||. .+.... ++... +.+.+| ++++|+.|||||+|||+.. . ..|..||+
T Consensus 225 g~~i~aD~Vv~a~G~~pn~-~l~~~~-gl~~~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 225 GETLQADVVIYGIGISAND-QLAREA-NLDTA-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQ 300 (396)
T ss_pred CCEEECCEEEECCCCChhh-HHHHhc-CCCcC-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHH
Confidence 9999999999999999997 455544 34333 457888 5778899999999999742 1 26889999
Q ss_pred HHHHHhhccc
Q 016088 383 NIADHINSIL 392 (395)
Q Consensus 383 ~~a~~i~~~l 392 (395)
.+|+||.+.-
T Consensus 301 ~aa~ni~g~~ 310 (396)
T PRK09754 301 IAAAAMLGLP 310 (396)
T ss_pred HHHHHhcCCC
Confidence 9999998754
No 51
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.97 E-value=9.7e-31 Score=248.49 Aligned_cols=297 Identities=15% Similarity=0.174 Sum_probs=186.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCCCceeecccccccc-C---CCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQ-L---PHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~~~l~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 81 (395)
+||++|||+|++|..+|.. ..|.+|++||++ .+||++- ..+.|...+........ + ..+..... .......
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 6999999999999998654 469999999985 5788664 33333322211111110 0 00110000 0012333
Q ss_pred HHHHHHHH-HHH--------------hcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016088 82 QFIEYLDH-YVS--------------HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (395)
Q Consensus 82 ~~~~~l~~-~~~--------------~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG 146 (395)
++.++... ..+ +.++++ +.++.+.. +.++|.+.++ ..++||+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g~~~~~-------~~~~V~~~~g--------~~~~~d~lIiATG 140 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDV--YDGHARFV-------GPRTLRTGDG--------EEITGDQIVIAAG 140 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEE--EEEEEEEe-------cCCEEEECCC--------cEEEeCEEEEEEC
Confidence 33333322 111 123332 33332211 2344666543 5789999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh
Q 016088 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE 226 (395)
Q Consensus 147 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~ 226 (395)
++|..|++.+.... .+..+.+...... .+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++|..
T Consensus 141 --s~p~~p~~~~~~~~--------~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~ 208 (452)
T TIGR03452 141 --SRPYIPPAIADSGV--------RYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHL 208 (452)
T ss_pred --CCCCCCCCCCCCCC--------EEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-cccccc
Confidence 78887764332211 1222222222222 37899999999999999999999999999999987 344433
Q ss_pred hHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceE
Q 016088 227 MVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IES 304 (395)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~ 304 (395)
+.++...+ .+.++ .+++++.+ +++
T Consensus 209 d~~~~~~l-----------------------------------------------------~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 209 DEDISDRF-----------------------------------------------------TEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred CHHHHHHH-----------------------------------------------------HHHHh-cCCEEEeCCEEEE
Confidence 32222111 11122 35777776 677
Q ss_pred EeC--Ce--EEecCCcEEeCcEEEEccCCCCCccccc-cCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---C
Q 016088 305 IRG--NE--VIFENGHSHHFDSIVFCTGFKRSTNVWL-KGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---G 376 (395)
Q Consensus 305 ~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~ 376 (395)
++. ++ +.+.+|+++++|.|++|+|++||...+. ...+...+++|++.+| ++++|+.|+|||+|||++.+. .
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~ 313 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHV 313 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhH
Confidence 753 23 4556788899999999999999985442 2332345778999999 567799999999999987633 7
Q ss_pred ccHHHHHHHHHhhcc
Q 016088 377 AAADAQNIADHINSI 391 (395)
Q Consensus 377 a~~~a~~~a~~i~~~ 391 (395)
|..||+.+|++|.+.
T Consensus 314 A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 314 ANAEARVVKHNLLHP 328 (452)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999864
No 52
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=5.3e-31 Score=251.23 Aligned_cols=275 Identities=20% Similarity=0.209 Sum_probs=190.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||++|+++|..|+++|++|+|+|+.+.+||.+... + +.+....++.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999888754321 1 11112246667
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
+..+.++++++++ +.++.+.. . +...+ ..+.||+||+|||.. .|..++++|.+..
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~--------~--v~~~~---------~~~~~d~vvlAtGa~-~~~~~~i~G~~~~--- 249 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR--------D--ITLDE---------LRAGYDAVFIGTGAG-LPRFLGIPGENLG--- 249 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC--------c--cCHHH---------HHhhCCEEEEccCCC-CCCCCCCCCccCC---
Confidence 6777777778665 77766511 1 22222 336799999999952 4666677776532
Q ss_pred CCCCcceeecccCCC--------CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhHHHHHHHhh
Q 016088 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGLVLLR 236 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~--------~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~~~~~ 236 (395)
.+++..++.. .....+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|....
T Consensus 250 -----gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-------- 316 (457)
T PRK11749 250 -----GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-------- 316 (457)
T ss_pred -----CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH--------
Confidence 2232222111 111258999999999999999999999988 799999876322222111
Q ss_pred cCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe-----
Q 016088 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----- 309 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~----- 309 (395)
..+.+++.+|+++.+ +.++..+.
T Consensus 317 --------------------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~ 346 (457)
T PRK11749 317 --------------------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTG 346 (457)
T ss_pred --------------------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEE
Confidence 012234456666665 55554332
Q ss_pred EEec-------------------CCcEEeCcEEEEccCCCCCcccccc-CCCCccCCCCCCCCCCCCcccCCCCeEEEec
Q 016088 310 VIFE-------------------NGHSHHFDSIVFCTGFKRSTNVWLK-GDDSMLNDDGIPKQSYPNHWKGKNGLYCVGL 369 (395)
Q Consensus 310 v~~~-------------------~g~~~~~D~vi~atG~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd 369 (395)
|.+. +++++++|.||+|+|++|+. .+.. ..+...+++|++.+|+..++|+.|+|||+||
T Consensus 347 v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 347 VEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 4432 23468999999999999996 4443 3323457789999995578899999999999
Q ss_pred cccc---ccCccHHHHHHHHHhhcccC
Q 016088 370 SRKG---LYGAAADAQNIADHINSILS 393 (395)
Q Consensus 370 ~~~~---~~~a~~~a~~~a~~i~~~l~ 393 (395)
++.+ +..|..+|+.+|.+|.++|.
T Consensus 426 ~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 426 IVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 9865 34899999999999998874
No 53
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=2.1e-30 Score=262.08 Aligned_cols=275 Identities=18% Similarity=0.201 Sum_probs=188.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||||||+||..|++.|++|+|||+.+.+||..+.. .+.|....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------IP~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------IPEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------CCCCcChHHHHH
Confidence 46899999999999999999999999999999999998865421 123334456777
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++..++++ +.++.+- . .+++.+. ....||.||+|||. ..|+.++++|.+..
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG--------~--dit~~~l--------~~~~yDAV~LAtGA-~~pr~l~IpG~dl~--- 416 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG--------K--TATLEDL--------KAAGFWKIFVGTGA-GLPTFMNVPGEHLL--- 416 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec--------c--EEeHHHh--------ccccCCEEEEeCCC-CCCCcCCCCCCcCc---
Confidence 7677778888776 7776551 1 1344332 34578999999995 26888888886532
Q ss_pred CCCCcceeecccCCC---------------CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHH
Q 016088 166 ATGTGEVIHSTQYKN---------------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~---------------~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~ 230 (395)
.++...++.. .....+|+|+|||+|.+|+|+|..+.+.|++|+++.|++...+|.....+
T Consensus 417 -----GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~ 491 (944)
T PRK12779 417 -----GVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL 491 (944)
T ss_pred -----CcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHH
Confidence 2232222211 11235899999999999999999999999999999988632223221111
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe--
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR-- 306 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~-- 306 (395)
.. ..+.+++++.. +.++.
T Consensus 492 ~~----------------------------------------------------------a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 492 HH----------------------------------------------------------ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred HH----------------------------------------------------------HHHCCCEEEeCcceEEEEec
Confidence 00 00112222221 11111
Q ss_pred --------------------CCe--EEecCC--cEEeCcEEEEccCCCCCccccccC-CCCccCCCCCCCCCCCCcccCC
Q 016088 307 --------------------GNE--VIFENG--HSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKGK 361 (395)
Q Consensus 307 --------------------~~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~ 361 (395)
.++ ....+| .++++|.||+|+|+.|+. .+... .+...+++|.+.+|+..++|+.
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~ 592 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSI 592 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCC
Confidence 111 111123 358999999999999986 34322 2223577899999865688999
Q ss_pred CCeEEEecccccc---cCccHHHHHHHHHhhccc
Q 016088 362 NGLYCVGLSRKGL---YGAAADAQNIADHINSIL 392 (395)
Q Consensus 362 ~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l 392 (395)
|+|||+||++++. ..|+.+|+.+|.+|.++|
T Consensus 593 pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 593 KGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998874 499999999999999886
No 54
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.1e-30 Score=262.27 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=196.7
Q ss_pred EEEECCChHHHHHHHHHhhc---CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 10 VIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~---~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
|+|||+|++|+.+|..|.+. +++|+||++++..+ |....+ +. .+....+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence 68999999999999998875 46899999988543 221110 00 00111122333333
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+++++.++++ +.+++|++++... ..|.+.++ ..+.||+||+||| +.|+.|+++|.+..
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g--------~~~~yD~LVlATG--s~p~~p~ipG~~~~---- 119 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG--------RTLSYDKLILATG--SYPFILPIPGADKK---- 119 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC--------cEeeCCEEEECCC--CCcCCCCCCCCCCC----
Confidence 344556677776 8899999998754 34666654 6899999999999 78999999987653
Q ss_pred CCCcceeecccCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh-hHHHHHHHhhcCCh
Q 016088 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYVPC 240 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~~~ 240 (395)
.++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++. +.....
T Consensus 120 ----~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~-------- 186 (785)
T TIGR02374 120 ----GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGR-------- 186 (785)
T ss_pred ----CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHH--------
Confidence 23332222111 11236899999999999999999999999999999887 343332 111111
Q ss_pred hhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC----eEEecC
Q 016088 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFEN 314 (395)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~----~v~~~~ 314 (395)
.+.+.+++.+|+++.+ +.++..+ .|.++|
T Consensus 187 ---------------------------------------------~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~d 221 (785)
T TIGR02374 187 ---------------------------------------------LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKD 221 (785)
T ss_pred ---------------------------------------------HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECC
Confidence 1234466778888887 7777543 478899
Q ss_pred CcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-------ccCccHHHHHHHHH
Q 016088 315 GHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------LYGAAADAQNIADH 387 (395)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------~~~a~~~a~~~a~~ 387 (395)
|+++++|.||+++|++||.. +.... ++... |.+.+| +.++|+.|+|||+|||+.. +..+..||+.+|.+
T Consensus 222 G~~i~~D~Vi~a~G~~Pn~~-la~~~-gl~~~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~n 297 (785)
T TIGR02374 222 GSSLEADLIVMAAGIRPNDE-LAVSA-GIKVN-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADH 297 (785)
T ss_pred CCEEEcCEEEECCCCCcCcH-HHHhc-CCccC-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999984 55444 23222 557787 5778999999999999753 22578999999999
Q ss_pred hhcc
Q 016088 388 INSI 391 (395)
Q Consensus 388 i~~~ 391 (395)
|.+.
T Consensus 298 i~g~ 301 (785)
T TIGR02374 298 ICGV 301 (785)
T ss_pred hcCC
Confidence 9864
No 55
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=6.3e-30 Score=254.65 Aligned_cols=287 Identities=24% Similarity=0.277 Sum_probs=182.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+||||||||+++|..|+++|++|+|+|+.+.+||.++.. + +.+....++.+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHHH
Confidence 45799999999999999999999999999999999888865431 1 12222234455
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
.-.+.+.++++++ +.++.+ ++.. .+. ....||+||+|||.. .+..++++|.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~l-----------e~L--------~~~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTV-----------EQL--------KNEGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEh-----------hhh--------eeccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 5555666778765 777766 2221 111 345689999999952 344556666542
Q ss_pred CCCCcceeecccCCC------CCCCCCCeEEEEcCCCCHHHHHHHHHhhc--CeeEEEEecCCcccchhhHHHHHHHhhc
Q 016088 166 ATGTGEVIHSTQYKN------GKPYGGKNVLVVGSGNSGMEIALDLANHA--AKTSLVIRSPVHVLSREMVYLGLVLLRY 237 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~g~~a~e~a~~l~~~g--~~v~~~~r~~~~~~p~~~~~~~~~~~~~ 237 (395)
.++...++.. .....+++|+|||+|.+|+|+|..+.+.+ .+|+++.|++...+|.....+......
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Alee- 720 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALED- 720 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHc-
Confidence 1222222111 11234899999999999999999998874 379999998744444433221111100
Q ss_pred CChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhc-CCcEEEecC-ceEEeCCe----EE
Q 016088 238 VPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIK-SGQIQVLPG-IESIRGNE----VI 311 (395)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-v~~~~~~~----v~ 311 (395)
++. ... ... ...+. ++++.+... +...+.++ +.
T Consensus 721 ------------------------GVe-------~~~---~~~-------p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~ 759 (1019)
T PRK09853 721 ------------------------GVE-------FKE---LLN-------PESFDADGTLTCRVMKLGEPDESGRRRPVE 759 (1019)
T ss_pred ------------------------CCE-------EEe---CCc-------eEEEEcCCcEEEEEEEeecccCCCceEEee
Confidence 000 000 000 00010 122221110 11111111 22
Q ss_pred ecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---cCccHHHHHHHHHh
Q 016088 312 FENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---YGAAADAQNIADHI 388 (395)
Q Consensus 312 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i 388 (395)
..++.++++|.||+|+|..|+.+ ++...+...+++|++.++ ..++++.|+|||+||++.++ ..|+.+|+.+|++|
T Consensus 760 tg~~~~I~aD~VIvAIG~~Pnte-lle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI 837 (1019)
T PRK09853 760 TGETVTLEADTVITAIGEQVDTE-LLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAI 837 (1019)
T ss_pred CCCeEEEEeCEEEECCCCcCChh-HHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHH
Confidence 33456789999999999999984 555443345778999997 67788999999999998764 38999999999999
Q ss_pred hccc
Q 016088 389 NSIL 392 (395)
Q Consensus 389 ~~~l 392 (395)
.+.+
T Consensus 838 ~~~~ 841 (1019)
T PRK09853 838 LSRE 841 (1019)
T ss_pred hhhc
Confidence 8865
No 56
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=3.1e-30 Score=239.86 Aligned_cols=287 Identities=16% Similarity=0.202 Sum_probs=194.1
Q ss_pred eEEEECCChHHHHHHHHHhhc---CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 9 EVIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~---~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
+|+|||||++|+.+|..|.++ +.+|+|||+++..- |... .+.......+..++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 589999999999999999754 57999999887321 1100 0000011223445666
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
.+.+.+++++++ ....+|++++.++ . .|.+.++ ..++||+||+||| +.|..|.++|..+....
T Consensus 59 ~~~~~~~~~gv~---~~~~~v~~id~~~--~--~V~~~~g--------~~~~yD~LviAtG--~~~~~~~i~g~~~~~~~ 121 (364)
T TIGR03169 59 DLRRLARQAGAR---FVIAEATGIDPDR--R--KVLLANR--------PPLSYDVLSLDVG--STTPLSGVEGAADLAVP 121 (364)
T ss_pred cHHHHHHhcCCE---EEEEEEEEEeccc--C--EEEECCC--------CcccccEEEEccC--CCCCCCCCCcccccccc
Confidence 666777777877 3456899998765 3 3777664 6789999999999 88888888885432100
Q ss_pred CCCCcceeeccc-CCC-C-CCCCCCeEEEEcCCCCHHHHHHHHHhh----c--CeeEEEEecCCcccchhhHHHHHHHhh
Q 016088 166 ATGTGEVIHSTQ-YKN-G-KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVIRSPVHVLSREMVYLGLVLLR 236 (395)
Q Consensus 166 ~~~~~~~~~~~~-~~~-~-~~~~~~~v~ViG~g~~a~e~a~~l~~~----g--~~v~~~~r~~~~~~p~~~~~~~~~~~~ 236 (395)
.+.......... ... . .....++++|+|+|.+|+|+|..|++. | .+|+++ +.+ .+++.......
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~~~~~----- 194 (364)
T TIGR03169 122 VKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFPAKVR----- 194 (364)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCCHHHH-----
Confidence 000000000000 000 0 011357999999999999999999863 3 479998 443 33332211111
Q ss_pred cCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCeEEecC
Q 016088 237 YVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFEN 314 (395)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~v~~~~ 314 (395)
..+.+.+++.+|+++.+ +.+++.+.+.+++
T Consensus 195 ------------------------------------------------~~~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~ 226 (364)
T TIGR03169 195 ------------------------------------------------RLVLRLLARRGIEVHEGAPVTRGPDGALILAD 226 (364)
T ss_pred ------------------------------------------------HHHHHHHHHCCCEEEeCCeeEEEcCCeEEeCC
Confidence 11245567789999987 8888888899999
Q ss_pred CcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCccc-CCCCeEEEeccccc--------ccCccHHHHHHH
Q 016088 315 GHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWK-GKNGLYCVGLSRKG--------LYGAAADAQNIA 385 (395)
Q Consensus 315 g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~vya~Gd~~~~--------~~~a~~~a~~~a 385 (395)
|+++++|.||+|+|.+|+. .+. ..+...+++|++.+|+ .+++ +.|||||+|||+.. ...|..||+.+|
T Consensus 227 g~~i~~D~vi~a~G~~p~~-~l~-~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a 303 (364)
T TIGR03169 227 GRTLPADAILWATGARAPP-WLA-ESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILA 303 (364)
T ss_pred CCEEecCEEEEccCCChhh-HHH-HcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHH
Confidence 9999999999999999985 333 3323457789999994 4554 89999999999742 126899999999
Q ss_pred HHhhccc
Q 016088 386 DHINSIL 392 (395)
Q Consensus 386 ~~i~~~l 392 (395)
+||.+.+
T Consensus 304 ~ni~~~l 310 (364)
T TIGR03169 304 ANLRASL 310 (364)
T ss_pred HHHHHHh
Confidence 9998765
No 57
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=1.7e-29 Score=233.14 Aligned_cols=288 Identities=20% Similarity=0.219 Sum_probs=186.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
....+|+|||+|++|+++|..|++.|.+|+++|+.+.+||.+... ++ ....+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~--------~~~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IP--------EFRIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cc--------ccccCHHHHH
Confidence 346799999999999999999999999999999998877654321 00 0011233444
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEE--eCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASY--DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~ 162 (395)
..+.++. +.+++. +.++.+..+.. ......|......... ..++||+||+|||++ .|..|+++|.+..
T Consensus 73 ~~~~~l~-~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~lviAtGs~-~~~~~~ipg~~~~ 142 (352)
T PRK12770 73 EGVKELE-EAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSLEE------LVKKYDAVLIATGTW-KSRKLGIPGEDLP 142 (352)
T ss_pred HHHHHHH-hCCeEE--ecCcEEeeccccccccccccccccCCHHH------HHhhCCEEEEEeCCC-CCCcCCCCCcccc
Confidence 4444443 447665 77777765432 1111223222211111 347899999999941 4777888876532
Q ss_pred ccCCCCCcceeeccc--------------CCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCe-eEEEEecCCcccchhh
Q 016088 163 CSSATGTGEVIHSTQ--------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREM 227 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~ 227 (395)
.++...+ .......++++++|||+|.+|+|+|..|...|.+ |+++.|++.+..|..
T Consensus 143 --------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~- 213 (352)
T PRK12770 143 --------GVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG- 213 (352)
T ss_pred --------CceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC-
Confidence 1222110 0011123478999999999999999999988887 999998762111100
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEE
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~ 305 (395)
....+.+++.+|+++.+ +.++
T Consensus 214 ---------------------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i 236 (352)
T PRK12770 214 ---------------------------------------------------------KYEIERLIARGVEFLELVTPVRI 236 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHcCCEEeeccCceee
Confidence 00112244445555554 4444
Q ss_pred eCCe----EEe--------------------cCCcEEeCcEEEEccCCCCCccccccC-CCCccCCCCCCCCCCCCcccC
Q 016088 306 RGNE----VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSYPNHWKG 360 (395)
Q Consensus 306 ~~~~----v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 360 (395)
+.++ +.+ .+++.+++|.||+++|++|+. .+..+ .+...+++|++.+| ...+++
T Consensus 237 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd-~~~~t~ 314 (352)
T PRK12770 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVD-EKHMTS 314 (352)
T ss_pred ecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeC-CCcccC
Confidence 3321 221 123578999999999999987 45444 43345677899988 456788
Q ss_pred CCCeEEEecccccc---cCccHHHHHHHHHhhcccC
Q 016088 361 KNGLYCVGLSRKGL---YGAAADAQNIADHINSILS 393 (395)
Q Consensus 361 ~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~ 393 (395)
.|+||++|||+.++ ..|..+|..+|.+|.+.|.
T Consensus 315 ~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 315 REGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998753 3899999999999988773
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=9e-30 Score=255.96 Aligned_cols=276 Identities=21% Similarity=0.248 Sum_probs=184.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||+||+++|..|+++|++|+|||+.+.+||.+.. .++. +....++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~---------~rlp~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPE---------FRLPKKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCC---------CCCCHHHHH
Confidence 4689999999999999999999999999999998888876542 1111 111134555
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.+.++++++ +.++.+. .. ++..+. ....||+||+|||. ..|+.++++|.+..
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~--------~~--v~~~~l--------~~~~ydavvlAtGa-~~~~~l~ipG~~~~--- 541 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG--------KT--ITIEEL--------EEEGFKGIFIASGA-GLPNFMNIPGENSN--- 541 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC--------Cc--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCCCCCCC---
Confidence 5555666777765 6666541 11 233221 34568999999995 25888888886632
Q ss_pred CCCCcceeecccCC-------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCe-eEEEEecCCcccchhhHHHH
Q 016088 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREMVYLG 231 (395)
Q Consensus 166 ~~~~~~~~~~~~~~-------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~~~~~ 231 (395)
.+++..++. ......+++|+|||+|.+|+|+|..+.+.|++ |+++.|++...+|......
T Consensus 542 -----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~- 615 (752)
T PRK12778 542 -----GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV- 615 (752)
T ss_pred -----CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-
Confidence 233222211 11123579999999999999999999999987 9999987632223221110
Q ss_pred HHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC--
Q 016088 232 LVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG-- 307 (395)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~-- 307 (395)
+.+++.+|+++.. +.++..
T Consensus 616 ---------------------------------------------------------~~~~~~GV~i~~~~~~~~i~~~~ 638 (752)
T PRK12778 616 ---------------------------------------------------------KHAKEEGIEFLTLHNPIEYLADE 638 (752)
T ss_pred ---------------------------------------------------------HHHHHcCCEEEecCcceEEEECC
Confidence 1112223333322 222211
Q ss_pred C----eEEe-------------------cC-CcEEeCcEEEEccCCCCCccccccCC-CCccCCCCCCCCCCCCcccCCC
Q 016088 308 N----EVIF-------------------EN-GHSHHFDSIVFCTGFKRSTNVWLKGD-DSMLNDDGIPKQSYPNHWKGKN 362 (395)
Q Consensus 308 ~----~v~~-------------------~~-g~~~~~D~vi~atG~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~ 362 (395)
+ ++.+ ++ ..++++|.||+|+|+.|+. .+.... +...+++|++.+|+ .++|+.|
T Consensus 639 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~ 716 (752)
T PRK12778 639 KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVDE-EMQSSIP 716 (752)
T ss_pred CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeCC-CCCCCCC
Confidence 0 1111 11 1358999999999999997 444332 23457789999984 5589999
Q ss_pred CeEEEecccccc---cCccHHHHHHHHHhhcccCC
Q 016088 363 GLYCVGLSRKGL---YGAAADAQNIADHINSILSP 394 (395)
Q Consensus 363 ~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~~ 394 (395)
+|||+||++.++ ..|..+|+.+|.+|.++|..
T Consensus 717 gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 717 GIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998764 38999999999999998864
No 59
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=2.9e-29 Score=247.42 Aligned_cols=274 Identities=17% Similarity=0.193 Sum_probs=183.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.++.. + +.+....++.+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 248 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVIDA 248 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHHHH
Confidence 5799999999999999999999999999999999988876532 1 112222355555
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+.+..+++++ ++++.+ +.+ +...+ ....||.||+|||.. .+..++++|.+..
T Consensus 249 ~~~~l~~~Gv~i--~~~~~v-~~d---------v~~~~---------~~~~~DaVilAtGa~-~~~~~~ipG~~~~---- 302 (652)
T PRK12814 249 DIAPLRAMGAEF--RFNTVF-GRD---------ITLEE---------LQKEFDAVLLAVGAQ-KASKMGIPGEELP---- 302 (652)
T ss_pred HHHHHHHcCCEE--EeCCcc-cCc---------cCHHH---------HHhhcCEEEEEcCCC-CCCCCCCCCcCcC----
Confidence 556667777665 666644 110 12211 223489999999942 2345677776532
Q ss_pred CCCcceeecccCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhHHHHHHHhhcCCh
Q 016088 167 TGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGLVLLRYVPC 240 (395)
Q Consensus 167 ~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~ 240 (395)
.++....+. ......+++++|||+|.+|+|+|..+.+.|. +|+++.|++...+|.....+....
T Consensus 303 ----gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~------ 372 (652)
T PRK12814 303 ----GVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEAL------ 372 (652)
T ss_pred ----CcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH------
Confidence 223222221 1123458999999999999999999999986 599999887434444322211111
Q ss_pred hhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC-----------
Q 016088 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG----------- 307 (395)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~----------- 307 (395)
+.+|+++.. +.++..
T Consensus 373 ----------------------------------------------------~eGV~i~~~~~~~~i~~~~~~~~v~~~~ 400 (652)
T PRK12814 373 ----------------------------------------------------AEGVSLRELAAPVSIERSEGGLELTAIK 400 (652)
T ss_pred ----------------------------------------------------HcCCcEEeccCcEEEEecCCeEEEEEEE
Confidence 112222221 111110
Q ss_pred --------Ce---EEecCCc--EEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc
Q 016088 308 --------NE---VIFENGH--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL 374 (395)
Q Consensus 308 --------~~---v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 374 (395)
++ ....+|+ .+++|.||+|+|+.|+. .++...+...+++|++.+|...++|+.|+|||+||+..++
T Consensus 401 ~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~ 479 (652)
T PRK12814 401 MQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA 479 (652)
T ss_pred EEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc
Confidence 00 1111232 58999999999999998 4555443445778999999767889999999999998764
Q ss_pred ---cCccHHHHHHHHHhhcccC
Q 016088 375 ---YGAAADAQNIADHINSILS 393 (395)
Q Consensus 375 ---~~a~~~a~~~a~~i~~~l~ 393 (395)
..|..+|+.+|.+|.++|.
T Consensus 480 ~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 480 DIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 3899999999999998874
No 60
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.97 E-value=1.3e-29 Score=216.27 Aligned_cols=190 Identities=37% Similarity=0.654 Sum_probs=136.2
Q ss_pred EEECCChHHHHHHHHHhhcCCC-eEEEecCCCCCcccccCCCCceeecccccc---ccCCCC---CCC-----CCCCCCC
Q 016088 11 IIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHL---PFP-----SSYPMFV 78 (395)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~~~~-v~vie~~~~~gg~~~~~~~~~l~~~~~~~~---~~~~~~---~~~-----~~~~~~~ 78 (395)
+|||||++||++|..|.++|.+ ++|||+++.+||.|... ++...+..+... +.++.+ ... .....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 99999999999999842 222222222221 111111 100 0124568
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g 158 (395)
+..++.+|++++++++++.+ +++++|+++.+++ +.|.|++.++ .+++|++||+|||.++.|+.|.++|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS---------EEEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccc
Confidence 89999999999999999885 9999999999987 5699999875 6889999999999988999999988
Q ss_pred ccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCc
Q 016088 159 LSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVH 221 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~ 221 (395)
..+ ...+|+.++.+...+++++|+|||+|.||+|+|..|++.|.+|++++|++.|
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 222 2678999998888889999999999999999999999999999999999865
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=3.1e-29 Score=239.41 Aligned_cols=284 Identities=19% Similarity=0.223 Sum_probs=184.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||.++.. + +.+....++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~~ 198 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVIDR 198 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHHH
Confidence 5799999999999999999999999999999999888765421 1 112222345555
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+.+.++++++ +.++.+.. + +.... ....||+||+|||.. .+..+.++|.+..
T Consensus 199 ~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~~d~vvlAtGa~-~~~~l~ipG~~~~---- 252 (471)
T PRK12810 199 RIELMEAEGIEF--RTNVEVGK-D---------ITAEE---------LLAEYDAVFLGTGAY-KPRDLGIPGRDLD---- 252 (471)
T ss_pred HHHHHHhCCcEE--EeCCEECC-c---------CCHHH---------HHhhCCEEEEecCCC-CCCcCCCCCccCC----
Confidence 556677778766 77766521 0 11111 234789999999942 3666778876532
Q ss_pred CCCcceeecccC-------------CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhHHHHH
Q 016088 167 TGTGEVIHSTQY-------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGL 232 (395)
Q Consensus 167 ~~~~~~~~~~~~-------------~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~ 232 (395)
.+....++ .......+++++|||+|.+|+|+|..+.+.|. +|+.+.+.+ +|......
T Consensus 253 ----gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~-- 323 (471)
T PRK12810 253 ----GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNK-- 323 (471)
T ss_pred ----CcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCcccccc--
Confidence 22221111 01123458999999999999999999888886 688554433 11110000
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCch-hhhhhcCCcEEEecC--ceEEeC-C
Q 016088 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAG-TCEKIKSGQIQVLPG--IESIRG-N 308 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~--v~~~~~-~ 308 (395)
... .+..... ..+.+.+.+++++.+ +.++.. +
T Consensus 324 --~~~------------------------------------------~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~ 359 (471)
T PRK12810 324 --NNP------------------------------------------WPYWPMKLEVSNAHEEGVEREFNVQTKEFEGEN 359 (471)
T ss_pred --ccC------------------------------------------CcccchHHHHHHHHHcCCeEEeccCceEEEccC
Confidence 000 0000000 012233456666665 555542 1
Q ss_pred -e---EE-----ecCC---------cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecc
Q 016088 309 -E---VI-----FENG---------HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLS 370 (395)
Q Consensus 309 -~---v~-----~~~g---------~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~ 370 (395)
. |. +.+| ..+++|.||+|+|+.|+...+++..+...+++|.+.+|+..++|+.|+|||+||+
T Consensus 360 g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~ 439 (471)
T PRK12810 360 GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDM 439 (471)
T ss_pred CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEcccc
Confidence 1 22 2222 4689999999999999865566655444577899988755778999999999999
Q ss_pred ccccc---CccHHHHHHHHHhhcccC
Q 016088 371 RKGLY---GAAADAQNIADHINSILS 393 (395)
Q Consensus 371 ~~~~~---~a~~~a~~~a~~i~~~l~ 393 (395)
+++.. .|..+|+.+|.+|.++|.
T Consensus 440 ~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 440 RRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 87643 799999999999998874
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=1.2e-28 Score=246.78 Aligned_cols=287 Identities=21% Similarity=0.252 Sum_probs=175.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+||||||||++||..|+++|++|+|||+.+.+||..+.. + +.+....+..+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------I---------P~~rlp~e~l~~ 592 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------I---------PEFRISAESIQK 592 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------c---------cccCCCHHHHHH
Confidence 5799999999999999999999999999999999888764321 1 111111344444
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+.+..+++++ +.++.. . +..... ....||+||+|||.+ .+..+.++|....
T Consensus 593 ~ie~l~~~GVe~--~~g~~~----------d--~~ve~l--------~~~gYDaVIIATGA~-~~~~l~I~G~~~~---- 645 (1012)
T TIGR03315 593 DIELVKFHGVEF--KYGCSP----------D--LTVAEL--------KNQGYKYVILAIGAW-KHGPLRLEGGGER---- 645 (1012)
T ss_pred HHHHHHhcCcEE--EEeccc----------c--eEhhhh--------hcccccEEEECCCCC-CCCCCCcCCCCcc----
Confidence 445566667665 555311 0 111111 345689999999952 3444456654321
Q ss_pred CCCcceeecccCC----C--CCCCCCCeEEEEcCCCCHHHHHHHHHhh-cC-eeEEEEecCCcccchhhHHHHHHHhhcC
Q 016088 167 TGTGEVIHSTQYK----N--GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (395)
Q Consensus 167 ~~~~~~~~~~~~~----~--~~~~~~~~v~ViG~g~~a~e~a~~l~~~-g~-~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (395)
++...++. . .....+++|+|||+|.+|+|+|..+.+. |. +|+++.|+....+|.....+.....
T Consensus 646 -----v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~ale--- 717 (1012)
T TIGR03315 646 -----VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE--- 717 (1012)
T ss_pred -----eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHH---
Confidence 22211111 1 1123489999999999999999999886 64 7999998774334433221111110
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCCe--EEecCC
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE--VIFENG 315 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~~--v~~~~g 315 (395)
.++. ... ... ...+..+++.+..- +...+.++ ....+|
T Consensus 718 ----------------------eGVe-------~~~---~~~-------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~G 758 (1012)
T TIGR03315 718 ----------------------DGVD-------FKE---LLS-------PESFEDGTLTCEVMKLGEPDASGRRRPVGTG 758 (1012)
T ss_pred ----------------------cCCE-------EEe---CCc-------eEEEECCeEEEEEEEeecccCCCceeeecCC
Confidence 0000 000 000 00011122222110 00111111 122234
Q ss_pred c--EEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc---CccHHHHHHHHHhhc
Q 016088 316 H--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY---GAAADAQNIADHINS 390 (395)
Q Consensus 316 ~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~~ 390 (395)
+ ++++|.||+|+|+.|+.. ++...+...+++|++.+|...++|+.|+|||+||++.++. .|+.+|+.+|.+|.+
T Consensus 759 ee~~I~aD~VIvAiG~~Pnt~-lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 759 ETVDLPADTVIAAVGEQVDTD-LLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILS 837 (1012)
T ss_pred CeEEEEeCEEEEecCCcCChH-HHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 3 679999999999999984 5555534457889999996557899999999999986643 899999999999986
Q ss_pred cc
Q 016088 391 IL 392 (395)
Q Consensus 391 ~l 392 (395)
+.
T Consensus 838 ~~ 839 (1012)
T TIGR03315 838 RE 839 (1012)
T ss_pred cc
Confidence 53
No 63
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=197.89 Aligned_cols=268 Identities=18% Similarity=0.265 Sum_probs=196.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC----CCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~----~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (395)
..+|+|||+||++..+|+++++..++.+++|-.- ..||+.. .....-.||. +|.-..+.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt----------TTT~veNfPG------FPdgi~G~~ 71 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT----------TTTDVENFPG------FPDGITGPE 71 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee----------eeeccccCCC------CCcccccHH
Confidence 3489999999999999999999999999999422 1122211 1111111121 122345689
Q ss_pred HHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc--c
Q 016088 83 FIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL--S 160 (395)
Q Consensus 83 ~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~--~ 160 (395)
+.+.++++.++++.+ .+...|.+++... ..|.+.+.. +.+++|.||+||| ...+...+||. .
T Consensus 72 l~d~mrkqs~r~Gt~---i~tEtVskv~~ss--kpF~l~td~---------~~v~~~avI~atG--AsAkRl~~pg~ge~ 135 (322)
T KOG0404|consen 72 LMDKMRKQSERFGTE---IITETVSKVDLSS--KPFKLWTDA---------RPVTADAVILATG--ASAKRLHLPGEGEG 135 (322)
T ss_pred HHHHHHHHHHhhcce---eeeeehhhccccC--CCeEEEecC---------CceeeeeEEEecc--cceeeeecCCCCcc
Confidence 999999999999988 6777788888866 778888854 7899999999999 45555556654 3
Q ss_pred ccccCCCCCcceeecccCCCCCC--CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcC
Q 016088 161 SFCSSATGTGEVIHSTQYKNGKP--YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (395)
+| +...+..|..++... +++|..+|||||.+|+|-|.+|...+.+|++++|++.+.....+
T Consensus 136 ~f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~M----------- 198 (322)
T KOG0404|consen 136 EF------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIM----------- 198 (322)
T ss_pred hH------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHH-----------
Confidence 46 677788888888655 88999999999999999999999999999999999842211111
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC-----eEE
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-----EVI 311 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~-----~v~ 311 (395)
..+..++.+|+++.+ +.+.-.+ ++.
T Consensus 199 ------------------------------------------------q~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ 230 (322)
T KOG0404|consen 199 ------------------------------------------------QQRAEKNPNIEVLYNTVAVEALGDGKLLNGLR 230 (322)
T ss_pred ------------------------------------------------HHHHhcCCCeEEEechhhhhhccCcccccceE
Confidence 123345566666666 2222222 122
Q ss_pred -----ecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc
Q 016088 312 -----FENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 373 (395)
Q Consensus 312 -----~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 373 (395)
..+-+.++++-+++++|..|++ .++... ...+.+|++++......|++|++||+||++..
T Consensus 231 ikn~~tge~~dl~v~GlFf~IGH~Pat-~~l~gq-ve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 231 IKNVKTGEETDLPVSGLFFAIGHSPAT-KFLKGQ-VELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred EEecccCcccccccceeEEEecCCchh-hHhcCc-eeeccCceEEeccCcccccccceeeccccchH
Confidence 2233578999999999999999 566654 56789999999977888999999999999764
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=250.83 Aligned_cols=278 Identities=18% Similarity=0.167 Sum_probs=185.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||||||++|..|+++|++|+|||+.+.+||..+.. .+.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------ip~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------IPSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------CCccCCCHHHHH
Confidence 35799999999999999999999999999999998887643321 122233356667
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++++++++ +.++.+ + .. ++..+.. ....||.||+|||. ..|+.++++|.+..
T Consensus 485 ~~~~~l~~~Gv~~--~~~~~v-g-------~~--~~~~~l~-------~~~~yDaViIATGa-~~pr~l~IpG~~l~--- 541 (1006)
T PRK12775 485 REVQRLVDIGVKI--ETNKVI-G-------KT--FTVPQLM-------NDKGFDAVFLGVGA-GAPTFLGIPGEFAG--- 541 (1006)
T ss_pred HHHHHHHHCCCEE--EeCCcc-C-------Cc--cCHHHHh-------hccCCCEEEEecCC-CCCCCCCCCCcCCC---
Confidence 6777778888776 776543 1 11 1111110 12458999999995 25788888886532
Q ss_pred CCCCcceeecccCC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCe-eEEEEecCCcccchhhHHH
Q 016088 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 166 ~~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~~~~ 230 (395)
.+++..++. +.....+++|+|||+|.+|+|+|..+.+.|++ |+++.|+...-+|.....
T Consensus 542 -----gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e- 615 (1006)
T PRK12775 542 -----QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE- 615 (1006)
T ss_pred -----CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-
Confidence 233332221 11223589999999999999999999999875 888887653222221110
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe--
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR-- 306 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~-- 306 (395)
.+.+++.+|+++.. +.++.
T Consensus 616 ---------------------------------------------------------~~~a~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 616 ---------------------------------------------------------IRHAKEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred ---------------------------------------------------------HHHHHhCCCEEEecCCcEEEEeC
Confidence 01122234444433 33331
Q ss_pred CC----eEEe-----------------cCC--cEEeCcEEEEccCCCCCccccccC-CCCccCCCCCCCCCC----CCcc
Q 016088 307 GN----EVIF-----------------ENG--HSHHFDSIVFCTGFKRSTNVWLKG-DDSMLNDDGIPKQSY----PNHW 358 (395)
Q Consensus 307 ~~----~v~~-----------------~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~~~~~~~g~~~~~~----~~~~ 358 (395)
++ ++.+ .+| ..+++|.||+|+|+.||.. +... .+...+++|.+.+|. ..++
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~~~gl~l~~~G~I~vd~~~v~~~~~ 717 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQSTPGLALNKWGNIAADDGKLESTQS 717 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhhccCCcccCCCCcEEeCCCccccCcC
Confidence 11 1111 122 2589999999999999974 4433 223456788888884 3678
Q ss_pred cCCCCeEEEeccccccc---CccHHHHHHHHHhhcccCC
Q 016088 359 KGKNGLYCVGLSRKGLY---GAAADAQNIADHINSILSP 394 (395)
Q Consensus 359 ~~~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~~~l~~ 394 (395)
|+.|+|||+||++.++. .|+.+|+.+|.+|..+|..
T Consensus 718 Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 718 TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999987643 8999999999999998753
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2.5e-28 Score=241.93 Aligned_cols=277 Identities=17% Similarity=0.211 Sum_probs=183.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+... + +.+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------i---------p~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------I---------PAFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------C---------CCccCCHHHHH
Confidence 35799999999999999999999999999999999888865431 1 11112234555
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++++++++ +.++.|.. . +...+ ....||.||+|||.+ .+..+.++|.+..
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~--------~--i~~~~---------~~~~~DavilAtGa~-~~~~l~i~g~~~~--- 436 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK--------D--ISLES---------LLEDYDAVFVGVGTY-RSMKAGLPNEDAP--- 436 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC--------c--CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCCCC---
Confidence 5556677778765 77776620 0 11111 223689999999963 3444556665432
Q ss_pred CCCCcceeecc--------------cCCC--CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhH
Q 016088 166 ATGTGEVIHST--------------QYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMV 228 (395)
Q Consensus 166 ~~~~~~~~~~~--------------~~~~--~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~ 228 (395)
| ++... .... .....+++++|||+|.+|+|+|..+.+.|+ +|+++.|++...+|....
T Consensus 437 ----G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~ 511 (654)
T PRK12769 437 ----G-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511 (654)
T ss_pred ----C-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence 1 11110 0000 012457899999999999999999999986 699999876333333221
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
. .+.+++.+|+++.+ +.++.
T Consensus 512 e----------------------------------------------------------~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 512 E----------------------------------------------------------VKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred H----------------------------------------------------------HHHHHHcCCeEEeccCcEEEE
Confidence 1 11122233443333 33331
Q ss_pred --CC----eEEe---------c---------CCc--EEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCC---Cc
Q 016088 307 --GN----EVIF---------E---------NGH--SHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYP---NH 357 (395)
Q Consensus 307 --~~----~v~~---------~---------~g~--~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~ 357 (395)
++ +|.+ + .|+ .+++|.||+|+|+.|+...++...+...+++|.+.+|.. .+
T Consensus 534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 613 (654)
T PRK12769 534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRY 613 (654)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCc
Confidence 11 1121 0 122 589999999999999864566555445678899988842 36
Q ss_pred ccCCCCeEEEeccccccc---CccHHHHHHHHHhhcccCC
Q 016088 358 WKGKNGLYCVGLSRKGLY---GAAADAQNIADHINSILSP 394 (395)
Q Consensus 358 ~~~~~~vya~Gd~~~~~~---~a~~~a~~~a~~i~~~l~~ 394 (395)
+|+.|+|||+||+..+.. .|+.+|+.+|.+|.++|.-
T Consensus 614 ~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 614 QTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred ccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 799999999999987743 7999999999999998853
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.96 E-value=4.1e-28 Score=230.89 Aligned_cols=275 Identities=17% Similarity=0.209 Sum_probs=183.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||+|++|+++|..|+++|++|+++|+.+.+||.++.. + +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 35799999999999999999999999999999999888765421 1 11122245666
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC-CCCCCCCcccccc
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP-FTPDIRGLSSFCS 164 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p-~~~~~~g~~~~~~ 164 (395)
...+.++++++++ ++++.|.. . +...+ ....||.||+|||. .+ ..++++|.+..
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~---------~~~~~D~vilAtGa--~~~~~~~i~g~~~~-- 250 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR--------D--ISLDD---------LLEDYDAVFLGVGT--YRSMRGGLPGEDAP-- 250 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC--------c--cCHHH---------HHhcCCEEEEEeCC--CCCCcCCCCCcCCC--
Confidence 6667778888776 77776621 0 11111 23468999999994 43 34567776542
Q ss_pred CCCCCcceeeccc-----------CC---C--CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhh
Q 016088 165 SATGTGEVIHSTQ-----------YK---N--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREM 227 (395)
Q Consensus 165 ~~~~~~~~~~~~~-----------~~---~--~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~ 227 (395)
.+++..+ .. . .....+++++|+|+|.+|+|+|..+.+.|. +||++.|++...+|...
T Consensus 251 ------gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~ 324 (467)
T TIGR01318 251 ------GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSR 324 (467)
T ss_pred ------CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCH
Confidence 1221110 00 0 012347999999999999999999999985 69999998743333322
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEE
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~ 305 (395)
..+ +.+++.+|+++.+ +.++
T Consensus 325 ~e~----------------------------------------------------------~~~~~~GV~~~~~~~~~~i 346 (467)
T TIGR01318 325 REV----------------------------------------------------------ANAREEGVEFLFNVQPVYI 346 (467)
T ss_pred HHH----------------------------------------------------------HHHHhcCCEEEecCCcEEE
Confidence 111 1122233444443 3333
Q ss_pred eC--Ce----EEe--------------------cCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCC---CC
Q 016088 306 RG--NE----VIF--------------------ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSY---PN 356 (395)
Q Consensus 306 ~~--~~----v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~---~~ 356 (395)
.. ++ +.+ .+...+++|.||+++|++|+...++...+...+++|++.+|. ..
T Consensus 347 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~ 426 (467)
T TIGR01318 347 ECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLP 426 (467)
T ss_pred EECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccC
Confidence 21 10 111 112368999999999999986455554433456778888883 35
Q ss_pred cccCCCCeEEEecccccc---cCccHHHHHHHHHhhcccC
Q 016088 357 HWKGKNGLYCVGLSRKGL---YGAAADAQNIADHINSILS 393 (395)
Q Consensus 357 ~~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~ 393 (395)
++|+.|+||++||++++. ..|..+|+.+|.+|.++|.
T Consensus 427 ~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999998764 3799999999999998763
No 67
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=3.7e-28 Score=210.71 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=198.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc-CCCCceeeccccccccCCCC------CCCCCCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLPHL------PFPSSYPMFV 78 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~-~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~ 78 (395)
.+|||+|||+||+|..||..+++.|++.+.+|++..+||++.. .+.|...+.-...+|..... ....+ +--.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs-~~~~ 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVS-SVSL 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccc-ceec
Confidence 4799999999999999999999999999999999999998753 33332222111112111110 00001 1112
Q ss_pred CHHHH-----------HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 79 SRAQF-----------IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 79 ~~~~~-----------~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
....+ ..-+....++.++.. +... -.-.+.....+...++.. ..++++.+|+|||.
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~---~kG~----gsf~~p~~V~v~k~dg~~------~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTY---VKGF----GSFLDPNKVSVKKIDGED------QIIKAKNIIIATGS 183 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEE---Eeee----EeecCCceEEEeccCCCc------eEEeeeeEEEEeCC
Confidence 22233 333334444444432 1111 111123455566666544 89999999999993
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh
Q 016088 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (395)
Q Consensus 148 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (395)
..+.. ||+.-- ...++.+.--...... +++++|||+|.+|+|++.-+.++|.+||++.--+ .+.|.-+
T Consensus 184 -eV~~~---PGI~ID------ekkIVSStgALsL~~v-Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD 251 (506)
T KOG1335|consen 184 -EVTPF---PGITID------EKKIVSSTGALSLKEV-PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMD 251 (506)
T ss_pred -ccCCC---CCeEec------CceEEecCCccchhhC-cceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccC
Confidence 14444 444321 2245554444444444 8999999999999999999999999999997554 3333333
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEE
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESI 305 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~ 305 (395)
.+++. .+.+.+.+.++.++.+ +...
T Consensus 252 ~Eisk-----------------------------------------------------~~qr~L~kQgikF~l~tkv~~a 278 (506)
T KOG1335|consen 252 GEISK-----------------------------------------------------AFQRVLQKQGIKFKLGTKVTSA 278 (506)
T ss_pred HHHHH-----------------------------------------------------HHHHHHHhcCceeEeccEEEEe
Confidence 33333 2344566677887777 6655
Q ss_pred eCCe-----EEec---CC--cEEeCcEEEEccCCCCCccccccCCCCc-cCCCCCCCCCCCCcccCCCCeEEEecccccc
Q 016088 306 RGNE-----VIFE---NG--HSHHFDSIVFCTGFKRSTNVWLKGDDSM-LNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL 374 (395)
Q Consensus 306 ~~~~-----v~~~---~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~ 374 (395)
+.++ +.++ ++ +.++||++++|+|++|-+..|..+..++ .|++|++.++ ...++..|+||+|||+..++
T Consensus 279 ~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gp 357 (506)
T KOG1335|consen 279 TRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGP 357 (506)
T ss_pred eccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcc
Confidence 5542 3333 23 5679999999999999887775444344 4889999999 56678999999999999998
Q ss_pred c---CccHHHHHHHHHhhcc
Q 016088 375 Y---GAAADAQNIADHINSI 391 (395)
Q Consensus 375 ~---~a~~~a~~~a~~i~~~ 391 (395)
+ .|..|+-.+.+.|...
T Consensus 358 MLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 358 MLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred hhhhhhhhhchhheeeeccc
Confidence 8 7778888877777543
No 68
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=217.41 Aligned_cols=264 Identities=25% Similarity=0.309 Sum_probs=197.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC--CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~--~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
...++|||+|++|..|+..+...+. +++++-++..+. |++. ..++.. ......+.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~--~Ls~~~--------------~~~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRA--RLSKFL--------------LTVGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccch--hcccce--------------eecccccc
Confidence 5689999999999999999999876 788887655321 2221 111100 00111222
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
....++.+.++++. ++++.|+.++...+. |.+.++ +.++|++++|||| +.+++|+++|.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~K~----l~~~~G--------e~~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLASKT----LVLGNG--------ETLKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccccE----EEeCCC--------ceeecceEEEeec--CccccCCCCCcccc--
Confidence 22334566778888 999999999987633 777776 8999999999999 78999999988743
Q ss_pred CCCCCcceeecccCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCC
Q 016088 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVP 239 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~ 239 (395)
.+....+..+. ......+++++|+|.+|+|+|..|...+.+||++.+.+ |.+|+...
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~----------- 254 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG----------- 254 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh-----------
Confidence 33333333221 11237889999999999999999999999999999998 77666433
Q ss_pred hhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC------eEE
Q 016088 240 CGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN------EVI 311 (395)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~------~v~ 311 (395)
+.+.+.+...+++.++++..+ +..++.+ .|.
T Consensus 255 -----------------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~ 293 (478)
T KOG1336|consen 255 -----------------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK 293 (478)
T ss_pred -----------------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE
Confidence 222333456688889999888 7777665 388
Q ss_pred ecCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc
Q 016088 312 FENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 373 (395)
Q Consensus 312 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 373 (395)
+.||+.+++|+||+++|.+||++.+-. +...++.|.+.|| ..++++.|||||+||++..
T Consensus 294 l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 294 LKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred eccCCEeccCeEEEeeccccccccccc--cceecccCCEeeh-hceeeccCCcccccceeec
Confidence 999999999999999999999954443 4678999999999 7888999999999999764
No 69
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-27 Score=200.98 Aligned_cols=325 Identities=18% Similarity=0.222 Sum_probs=204.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCeEEEec--CCCCCcccccC-CCCceeeccccccccC-----------CCCCC
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILER--ENCYASIWKKY-SYDRLRLHLAKQFCQL-----------PHLPF 70 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~--~~~~gg~~~~~-~~~~l~~~~~~~~~~~-----------~~~~~ 70 (395)
..+||++|||||.+||+||.+++..|.+|.++|- -.-.|..|.-. ..-+.-+ +|+.+|.- ..+.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGC-IPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGC-IPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeeccc-ccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3579999999999999999999999999999982 22244455532 0101101 12222210 01111
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHhcCCcceeeee-eeEEEeEE-eCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 71 PSSY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQ-RSVESASY-DEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 71 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~-~~V~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
...- .-......+.+.+++.++..++-.++.++ .+|+-+.. .+..+.+.+...+.. ++. ..++++.+|+|||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~--gk~--~~~ta~~fvIatG- 170 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKK--GKE--RFLTAENFVIATG- 170 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCC--Cce--EEeecceEEEEec-
Confidence 1110 22346678889999999888877633332 23333321 111223334444332 222 8899999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh
Q 016088 148 TSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM 227 (395)
Q Consensus 148 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~ 227 (395)
.+|+.|.|||..++ .+.+.+.... ++.+.+.+|+|+|..|+|+|..|+-.|.+||++.|+= ++--++
T Consensus 171 -~RPrYp~IpG~~Ey---------~ITSDDlFsl-~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFD 237 (503)
T KOG4716|consen 171 -LRPRYPDIPGAKEY---------GITSDDLFSL-PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFD 237 (503)
T ss_pred -CCCCCCCCCCceee---------eecccccccc-cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--eccccc
Confidence 89999999998887 5665555543 3347778999999999999999999999999999974 333444
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecCceEEeC
Q 016088 228 VYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRG 307 (395)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~ 307 (395)
.+++..+..+| ...++...... .....+.+.++.+.+....
T Consensus 238 qdmae~v~~~m--------------------~~~Gikf~~~~--------------vp~~Veq~~~g~l~v~~k~----- 278 (503)
T KOG4716|consen 238 QDMAELVAEHM--------------------EERGIKFLRKT--------------VPERVEQIDDGKLRVFYKN----- 278 (503)
T ss_pred HHHHHHHHHHH--------------------HHhCCceeecc--------------cceeeeeccCCcEEEEeec-----
Confidence 44444333222 22222111110 0001222333333332110
Q ss_pred CeEEecCCcEEeCcEEEEccCCCCCccccccCCCCccC--CCCCCCCCCCCcccCCCCeEEEeccccc----ccCccHHH
Q 016088 308 NEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLN--DDGIPKQSYPNHWKGKNGLYCVGLSRKG----LYGAAADA 381 (395)
Q Consensus 308 ~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~vya~Gd~~~~----~~~a~~~a 381 (395)
.....+-+-++|.|+||.|+.+.+..+..+..++.. +.|.+.++ +..+++.|+|||+||...+ ...|++.+
T Consensus 279 --t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpELTPvAIqsG 355 (503)
T KOG4716|consen 279 --TNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPELTPVAIQSG 355 (503)
T ss_pred --ccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcccchhhhhhc
Confidence 011122345799999999999999877665556653 77889888 6778999999999999765 33888888
Q ss_pred HHHHHHhhc
Q 016088 382 QNIADHINS 390 (395)
Q Consensus 382 ~~~a~~i~~ 390 (395)
+.+|+.+-+
T Consensus 356 rlLa~Rlf~ 364 (503)
T KOG4716|consen 356 RLLARRLFA 364 (503)
T ss_pred hHHHHHHhc
Confidence 888887743
No 70
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-27 Score=203.92 Aligned_cols=270 Identities=19% Similarity=0.312 Sum_probs=206.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..|||+||||||+|.++|.+.+|+|++.-++- ..+||.-... +.+.++- .-....+.++..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT-------------~~IENfI----sv~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT-------------MGIENFI----SVPETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc-------------cchhhee----ccccccchHHHH
Confidence 46999999999999999999999999877773 3456543221 0111100 011235678999
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCC-CCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
.+....++|++++ +.-.+.+++.+... .+.+.|++.++ ..++++.+|+||| .+.+-..+||.++|
T Consensus 271 ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG--------avLkaktvIlstG--ArWRn~nvPGE~e~-- 336 (520)
T COG3634 271 ALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG--------AVLKARTVILATG--ARWRNMNVPGEDEY-- 336 (520)
T ss_pred HHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC--------ceeccceEEEecC--cchhcCCCCchHHH--
Confidence 9999999999887 88888888887432 35788999887 7899999999999 67777788999999
Q ss_pred CCCCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHH
Q 016088 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVD 244 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~ 244 (395)
......+|..++...+++|+|+|||||.+|+|+|-.|+-.-..||++.=.+ .-.. +
T Consensus 337 ----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~-----eLkA---------------D 392 (520)
T COG3634 337 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP-----ELKA---------------D 392 (520)
T ss_pred ----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch-----hhhh---------------H
Confidence 778888999999999999999999999999999999999988999995433 1100 0
Q ss_pred HHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhh-cCCcEEEecC--ceEEeCC-----eEEec---
Q 016088 245 TLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI-KSGQIQVLPG--IESIRGN-----EVIFE--- 313 (395)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--v~~~~~~-----~v~~~--- 313 (395)
.. +.+.+ .-.++.++++ -+++..+ ++.+.
T Consensus 393 ~V----------------------------------------Lq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~ 432 (520)
T COG3634 393 AV----------------------------------------LQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRV 432 (520)
T ss_pred HH----------------------------------------HHHHHhcCCCcEEEecceeeEEecCCceecceEEEecc
Confidence 00 11112 2257788877 5666665 34444
Q ss_pred CCcEE--eCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccccc
Q 016088 314 NGHSH--HFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGLY 375 (395)
Q Consensus 314 ~g~~~--~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~~ 375 (395)
+|++. .-+-|++-+|..||+ .|++.. ..++++|.+++| ....|+.|+|||+|||+..++
T Consensus 433 sge~~~l~LeGvFVqIGL~PNT-~WLkg~-vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 433 SGEEHHLELEGVFVQIGLLPNT-EWLKGA-VELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred CCceeEEEeeeeEEEEecccCh-hHhhch-hhcCcCccEEEe-cCCCcCCCceeecCcccCCcc
Confidence 34444 556799999999999 798877 678999999999 688899999999999987754
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=4.9e-27 Score=231.67 Aligned_cols=276 Identities=16% Similarity=0.189 Sum_probs=182.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.|+... +. +....++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gi---------------p~---------~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGI---------------PP---------FKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccC---------------Cc---------ccCCHHHHH
Confidence 368999999999999999999999999999999999988765421 11 111245555
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++.+++++ ++++.+.. . +...+ ....+|.||+|||.+ .+..+.++|.+..
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~--------~--~~~~~---------l~~~~DaV~latGa~-~~~~~~i~g~~~~--- 419 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR--------D--ITFSD---------LTSEYDAVFIGVGTY-GMMRADLPHEDAP--- 419 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC--------c--CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCccC---
Confidence 5556677778776 77776621 0 11111 234689999999963 3445566665531
Q ss_pred CCCCcceeecc--------c---CCC-----CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhH
Q 016088 166 ATGTGEVIHST--------Q---YKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMV 228 (395)
Q Consensus 166 ~~~~~~~~~~~--------~---~~~-----~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~ 228 (395)
| ++... . ... .....+++++|+|+|.+|+|+|..+.+.|+ +||++.|++...+|....
T Consensus 420 ----g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~ 494 (639)
T PRK12809 420 ----G-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK 494 (639)
T ss_pred ----C-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 2 22110 0 000 122357999999999999999999989886 699999876333333222
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
.+.. .++.+++++.. +.++.
T Consensus 495 e~~~----------------------------------------------------------a~~eGv~~~~~~~~~~i~ 516 (639)
T PRK12809 495 EVVN----------------------------------------------------------AREEGVEFQFNVQPQYIA 516 (639)
T ss_pred HHHH----------------------------------------------------------HHHcCCeEEeccCCEEEE
Confidence 1110 11123333332 22222
Q ss_pred C--C----eEE------------------ecCC--cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCC---Cc
Q 016088 307 G--N----EVI------------------FENG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYP---NH 357 (395)
Q Consensus 307 ~--~----~v~------------------~~~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~ 357 (395)
. + ++. ...| ..+++|.||+|+|++|+...++...+...+++|.+.+|+. .+
T Consensus 517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~ 596 (639)
T PRK12809 517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPT 596 (639)
T ss_pred ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCc
Confidence 0 0 011 1112 3679999999999999765566555344677899888742 46
Q ss_pred ccCCCCeEEEecccccc---cCccHHHHHHHHHhhcccC
Q 016088 358 WKGKNGLYCVGLSRKGL---YGAAADAQNIADHINSILS 393 (395)
Q Consensus 358 ~~~~~~vya~Gd~~~~~---~~a~~~a~~~a~~i~~~l~ 393 (395)
+|+.|+|||+||+.++. ..|+.+|+.+|.+|..+|.
T Consensus 597 ~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 597 QTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred ccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999998764 3799999999999998874
No 72
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.4e-26 Score=228.33 Aligned_cols=275 Identities=17% Similarity=0.166 Sum_probs=174.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..++|+|||+|++|+++|..|.++|++|+|+|+.+..||.+... + +.+....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i---------~~~~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------I---------PSYRLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------C---------CcccCCHHHHH
Confidence 36789999999999999999999999999999999887754321 1 11112234444
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
...+.++++++++ +.++.|.. + +.... ....||+||+|||. ..|+.++++|.+..
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~---------~~~~yD~vilAtGa-~~~r~l~i~G~~~~--- 392 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK-D---------IPLEE---------LREKHDAVFLSTGF-TLGRSTRIPGTDHP--- 392 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC-c---------CCHHH---------HHhcCCEEEEEcCc-CCCccCCCCCcCCc---
Confidence 4455667778765 77777621 0 11111 23478999999995 23677778886532
Q ss_pred CCCCcceeecccCCC---------C-CCCCCCeEEEEcCCCCHHHHHHHHHhhcC------eeEEEEec-CCcccchhhH
Q 016088 166 ATGTGEVIHSTQYKN---------G-KPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVIRS-PVHVLSREMV 228 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~---------~-~~~~~~~v~ViG~g~~a~e~a~~l~~~g~------~v~~~~r~-~~~~~p~~~~ 228 (395)
.++...++.. . ....+++++|||+|.+|+|+|..+++.+. +|+++... ....+|....
T Consensus 393 -----gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~ 467 (604)
T PRK13984 393 -----DVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME 467 (604)
T ss_pred -----CeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH
Confidence 2222222111 0 11237899999999999999999998753 68887432 1111222111
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR 306 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~ 306 (395)
.+.. ..+.+|+++.+ +.++.
T Consensus 468 e~~~----------------------------------------------------------~~~~GV~i~~~~~~~~i~ 489 (604)
T PRK13984 468 EIEE----------------------------------------------------------GLEEGVVIYPGWGPMEVV 489 (604)
T ss_pred HHHH----------------------------------------------------------HHHcCCEEEeCCCCEEEE
Confidence 1000 00112222222 11111
Q ss_pred C--C---eEEe-------------------cCCcEEeCcEEEEccCCCCCccccccCCC-CccCCCCCCCCCCCCcccCC
Q 016088 307 G--N---EVIF-------------------ENGHSHHFDSIVFCTGFKRSTNVWLKGDD-SMLNDDGIPKQSYPNHWKGK 361 (395)
Q Consensus 307 ~--~---~v~~-------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~ 361 (395)
. + ++.+ .++..+++|.||+|+|+.||...+..... .+..++|.+.+| +.++|+.
T Consensus 490 ~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd-~~~~Ts~ 568 (604)
T PRK13984 490 IENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTN-EYGQTSI 568 (604)
T ss_pred ccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeC-CCCccCC
Confidence 0 0 0111 12246899999999999999854433221 233357888888 5788999
Q ss_pred CCeEEEecccccc--cCccHHHHHHHHHhhcccC
Q 016088 362 NGLYCVGLSRKGL--YGAAADAQNIADHINSILS 393 (395)
Q Consensus 362 ~~vya~Gd~~~~~--~~a~~~a~~~a~~i~~~l~ 393 (395)
|+|||+||++.+. ..|+.+|+.+|.+|.++|.
T Consensus 569 ~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 569 PWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998763 4899999999999998875
No 73
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.95 E-value=1.8e-26 Score=218.95 Aligned_cols=274 Identities=18% Similarity=0.275 Sum_probs=183.7
Q ss_pred HHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCC-HHHHHHH-HHHHHHhcCC
Q 016088 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVS-RAQFIEY-LDHYVSHFNI 96 (395)
Q Consensus 21 ~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~ 96 (395)
++|..|.+. ..+|+|||+++.+.-. + ...+........ ..++..+ .+++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~--------------------~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA--------------------N-CGLPYVIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE--------------------c-CCCCeEeccccCCHHHcccCCHHHHHHhcCC
Confidence 367888776 4689999998843200 0 000000011111 2233333 2445577787
Q ss_pred cceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEE--eCEEEEeecCCCCCCCCCCCCccccccCCCCCcceee
Q 016088 97 VPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS--GRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIH 174 (395)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 174 (395)
.+ +.+++|+.++..+ +.+.+....+ . ..++ ||+||+||| ++|+.|+++|.+.. .++.
T Consensus 60 ~~--~~~~~V~~id~~~--~~v~~~~~~~-~------~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--------~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--QTVVVRNNKT-N------ETYEESYDYLILSPG--ASPIVPNIEGINLD--------IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--CEEEEEECCC-C------CEEecCCCEEEECCC--CCCCCCCCCCcCCC--------CEEE
Confidence 65 7899999998754 4544433211 1 4566 999999999 78998888886522 2232
Q ss_pred cccCCC-------CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHH
Q 016088 175 STQYKN-------GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLM 247 (395)
Q Consensus 175 ~~~~~~-------~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 247 (395)
.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+++....+.....+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~----------------- 181 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEM----------------- 181 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHH-----------------
Confidence 222111 01234789999999999999999999999999999988732122111111
Q ss_pred HHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe--EEecCCcEEeCcEE
Q 016088 248 VMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE--VIFENGHSHHFDSI 323 (395)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~--v~~~~g~~~~~D~v 323 (395)
...+.+.+++.+|+++.+ +.+++.++ +.+.+|+.+++|.|
T Consensus 182 ------------------------------------~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~v 225 (427)
T TIGR03385 182 ------------------------------------NQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMV 225 (427)
T ss_pred ------------------------------------HHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEE
Confidence 111234566678898877 88887654 36788999999999
Q ss_pred EEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc-------------ccCccHHHHHHHHHhhc
Q 016088 324 VFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG-------------LYGAAADAQNIADHINS 390 (395)
Q Consensus 324 i~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~-------------~~~a~~~a~~~a~~i~~ 390 (395)
|+|+|++|+.+ ++...+...+++|++.+| +.++++.|+|||+|||+.. ...|..||+.+|++|.+
T Consensus 226 i~a~G~~p~~~-~l~~~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 226 ILATGIKPNSE-LAKDSGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred EECCCccCCHH-HHHhcCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 99999999984 555543445778999999 5677899999999999752 22788999999999976
Q ss_pred c
Q 016088 391 I 391 (395)
Q Consensus 391 ~ 391 (395)
.
T Consensus 304 ~ 304 (427)
T TIGR03385 304 N 304 (427)
T ss_pred C
Confidence 4
No 74
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=4.6e-26 Score=217.67 Aligned_cols=306 Identities=20% Similarity=0.208 Sum_probs=176.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+|||||++|+++|..|+++|++|+|+|+.+.+||..... + +.+....++...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~~ 198 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------I---------PNMKLDKAIVDR 198 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------C---------CCccCCHHHHHH
Confidence 4799999999999999999999999999999998877643321 1 111222345555
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+.++++++++ +.++.|. .+ +.. +. ....||.||+|||.. .|..++++|.+..
T Consensus 199 ~~~~~~~~Gv~~--~~~~~v~-~~---------~~~-~~--------~~~~~d~VilAtGa~-~~~~l~i~G~~~~---- 252 (485)
T TIGR01317 199 RIDLLSAEGIDF--VTNTEIG-VD---------ISA-DE--------LKEQFDAVVLAGGAT-KPRDLPIPGRELK---- 252 (485)
T ss_pred HHHHHHhCCCEE--ECCCEeC-Cc---------cCH-HH--------HHhhCCEEEEccCCC-CCCcCCCCCcCCC----
Confidence 556667778776 7777662 10 111 10 335689999999942 3777888886531
Q ss_pred CCCcceeecccC--------C-------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhHHH
Q 016088 167 TGTGEVIHSTQY--------K-------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYL 230 (395)
Q Consensus 167 ~~~~~~~~~~~~--------~-------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~ 230 (395)
+ ++....+ . ......+|+++|||+|.+|+|+|..+.+.+. +|+++.+.+. .++....
T Consensus 253 ---g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~-~~~~~~~-- 325 (485)
T TIGR01317 253 ---G-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK-PPEARAK-- 325 (485)
T ss_pred ---C-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC-Chhhccc--
Confidence 2 2211100 0 0112458999999999999999988888875 6999987762 2111000
Q ss_pred HHHHhhcCChhh-HHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC--CcEEEec-C-ce-E
Q 016088 231 GLVLLRYVPCGG-VDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS--GQIQVLP-G-IE-S 304 (395)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~-v~-~ 304 (395)
...+|..- .......... .....++. . ..+.....+...+ +++.-+. . ++ .
T Consensus 326 ----~~~~~~~~~~~e~~~a~~e----~~~~~gv~-----~----------~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 382 (485)
T TIGR01317 326 ----DNPWPEWPRVYRVDYAHEE----AAAHYGRD-----P----------REYSILTKEFIGDDEGKVTALRTVRVEWK 382 (485)
T ss_pred ----ccCCCccchhhhhHHHHHh----hhhhcCcc-----c----------eEEecCcEEEEEcCCCeEEEEEEEEEEec
Confidence 00000000 0000000000 00000000 0 0000000000000 1111000 0 00 0
Q ss_pred EeCCe----EEec-CCcEEeCcEEEEccCCC-CCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc---c
Q 016088 305 IRGNE----VIFE-NGHSHHFDSIVFCTGFK-RSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL---Y 375 (395)
Q Consensus 305 ~~~~~----v~~~-~g~~~~~D~vi~atG~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~---~ 375 (395)
.++++ +... +..++++|.||+|+|+. |+. .+++..+...+++|.+.++++.++|+.|+|||+||++.+. .
T Consensus 383 ~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~ 461 (485)
T TIGR01317 383 KSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIV 461 (485)
T ss_pred cCCCCCccceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHH
Confidence 00111 1111 12368999999999997 776 4555553344778888666578889999999999998764 3
Q ss_pred CccHHHHHHHHHhhcccC
Q 016088 376 GAAADAQNIADHINSILS 393 (395)
Q Consensus 376 ~a~~~a~~~a~~i~~~l~ 393 (395)
.|..+|+.+|.+|.++|.
T Consensus 462 ~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 462 WAINEGRKAAAAVDRYLM 479 (485)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999998874
No 75
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=6.2e-26 Score=221.53 Aligned_cols=274 Identities=20% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
...+|+|||+|++|+++|..|++.|++|+++|+.+.+||.++.. ++ .+....++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip---------~~~~~~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IP---------AYRLPREVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CC---------CccCCHHHHH
Confidence 35799999999999999999999999999999999998865431 11 1111234444
Q ss_pred HHHHHHHhcCCcceeeeeeeE-EEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccccc
Q 016088 86 YLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCS 164 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~ 164 (395)
.-.+.+.+++++. .+++.+ .++..+ . ....+|.||+|+|.. .+....+++.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~~-----------~---------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITLE-----------Q---------LEGEFDAVFVAIGAQ-LGKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCHH-----------H---------HHhhCCEEEEeeCCC-CCCcCCCCCCcc---
Confidence 4445566777665 666655 222111 0 112479999999953 233345555432
Q ss_pred CCCCCcceeecccCC-----CCCCCCCCeEEEEcCCCCHHHHHHHHHhhc-CeeEEEEecCCcccchhhHHHHHHHhhcC
Q 016088 165 SATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~-----~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g-~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (395)
.+ ++....+. ......+++++|+|+|.+|+|++..+.+++ .+|+++.|.+...+|.....+
T Consensus 246 ----~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-------- 312 (564)
T PRK12771 246 ----AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-------- 312 (564)
T ss_pred ----CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH--------
Confidence 12 22211111 112344899999999999999999999888 569999987632222211111
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe-------
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE------- 309 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~------- 309 (395)
+...+.+++++.+ +.++..+.
T Consensus 313 --------------------------------------------------~~a~~~GVki~~~~~~~~i~~~~~~~~~v~ 342 (564)
T PRK12771 313 --------------------------------------------------EEALREGVEINWLRTPVEIEGDENGATGLR 342 (564)
T ss_pred --------------------------------------------------HHHHHcCCEEEecCCcEEEEcCCCCEEEEE
Confidence 1111223444433 33332211
Q ss_pred ---EEe----c-------CC--cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc
Q 016088 310 ---VIF----E-------NG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG 373 (395)
Q Consensus 310 ---v~~----~-------~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~ 373 (395)
+.+ + +| .++++|.||+|+|+.|+. .++....++.+++|++.+|...++|+.|+||++||+..+
T Consensus 343 ~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g 421 (564)
T PRK12771 343 VITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPG 421 (564)
T ss_pred EEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCC
Confidence 111 1 22 368999999999999987 454432233478899999966788999999999999875
Q ss_pred c---cCccHHHHHHHHHhhcccC
Q 016088 374 L---YGAAADAQNIADHINSILS 393 (395)
Q Consensus 374 ~---~~a~~~a~~~a~~i~~~l~ 393 (395)
+ ..|..+|+.+|.+|.+.|.
T Consensus 422 ~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 422 PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc
Confidence 4 4899999999999988874
No 76
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.94 E-value=2e-25 Score=209.96 Aligned_cols=318 Identities=16% Similarity=0.108 Sum_probs=179.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhh--cCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~--~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
..++|+||||||||++||..|++ .|++|+|||+.+..||..+... .+.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv-----------------------aP~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV-----------------------APDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc-----------------------CCCcchhHHH
Confidence 35789999999999999999987 6999999999998888655321 0223344566
Q ss_pred HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016088 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (395)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~ 163 (395)
.+.+.+.+...++.. +.+..|- .. +...+ ....||.||+|||.. .+..++++|.+..
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg--------~d--vtl~~---------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~- 138 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG--------RD--VSLSE---------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP- 138 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC--------cc--ccHHH---------HhhhCCEEEEecCCC-CCCCCCCCCCCCC-
Confidence 667777676666554 5554441 00 23322 234689999999952 2356678886532
Q ss_pred cCCCCCcceeecccCC----------CC--CCCCCCeEEEEcCCCCHHHHHHHHHhh--------------------cC-
Q 016088 164 SSATGTGEVIHSTQYK----------NG--KPYGGKNVLVVGSGNSGMEIALDLANH--------------------AA- 210 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~----------~~--~~~~~~~v~ViG~g~~a~e~a~~l~~~--------------------g~- 210 (395)
.++...++. .. ....+++++|||+|.+|+|+|..|.+. +.
T Consensus 139 -------gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 139 -------GVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -------CeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 233322221 00 112479999999999999999998864 43
Q ss_pred eeEEEEecCCcccchhhHHHHHHHh------hcCChhhHH-HHHHHHHHHHhcchhhcCCCCCCCCcc-hhhccCCCcee
Q 016088 211 KTSLVIRSPVHVLSREMVYLGLVLL------RYVPCGGVD-TLMVMLSRLVYGDLSKYGIHKPREGPF-FMKAAYGKYPV 282 (395)
Q Consensus 211 ~v~~~~r~~~~~~p~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 282 (395)
+|+++.|+...-.+....++..+.. ...+..+.. ... .......++..... .+.......+.
T Consensus 212 ~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~r~~~r~~~~l~~~a~~~~~ 281 (491)
T PLN02852 212 KVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPED----------EEELKASRPKRRVYELLSKAAAAGKC 281 (491)
T ss_pred EEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccch----------hhhhccchhhHHHHHHHHHHHhhccc
Confidence 5999999874333322222211110 000000000 000 00000000000000 00000000000
Q ss_pred eCchhhhhhcCCcEEEecC--ceEEeC-----C---eEEe-----------------cCC--cEEeCcEEEEccCCC--C
Q 016088 283 IDAGTCEKIKSGQIQVLPG--IESIRG-----N---EVIF-----------------ENG--HSHHFDSIVFCTGFK--R 331 (395)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~--v~~~~~-----~---~v~~-----------------~~g--~~~~~D~vi~atG~~--~ 331 (395)
. ..-...++.++.. ..+|.. + ++.+ .+| +.+++|.||.+.|++ |
T Consensus 282 ~-----~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p 356 (491)
T PLN02852 282 A-----PSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLP 356 (491)
T ss_pred c-----cCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCC
Confidence 0 0000022333322 222210 0 1211 123 357999999999998 4
Q ss_pred Cccc-cccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccccc----cCccHHHHHHHHHhhccc
Q 016088 332 STNV-WLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKGL----YGAAADAQNIADHINSIL 392 (395)
Q Consensus 332 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~~----~~a~~~a~~~a~~i~~~l 392 (395)
.... +....+...+++|++.++ ..+.|+.|||||+||+..++ .+++.+|..++.+|..++
T Consensus 357 ~~~l~f~~~~gv~~n~~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 357 VDGLPFDHKRGVVPNVHGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCCCccccCcCeeECCCceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 4321 222222345778999987 45568999999999998774 499999999999998875
No 77
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.94 E-value=1.8e-25 Score=197.19 Aligned_cols=301 Identities=17% Similarity=0.166 Sum_probs=200.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
.+++|+|+|+|++|.+++..|--.-++|++|++++.+--+|.. |.-..+-..-..+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----------------------pS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----------------------PSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc----------------------CCccccceeehhhhh
Confidence 4689999999999999999999889999999988843222111 111122233356667
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSS 165 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~ 165 (395)
.++..+++.+... -+++.+-++++++. ...++.......+..+ ..+.||+||+|+| .+++.+.++|..+++++
T Consensus 112 PIr~i~r~k~~~~-~y~eAec~~iDp~~--k~V~~~s~t~~~~~~e--~~i~YDyLViA~G--A~~~TFgipGV~e~~~F 184 (491)
T KOG2495|consen 112 PIRAIARKKNGEV-KYLEAECTKIDPDN--KKVHCRSLTADSSDKE--FVIGYDYLVIAVG--AEPNTFGIPGVEENAHF 184 (491)
T ss_pred hHHHHhhccCCCc-eEEecccEeecccc--cEEEEeeeccCCCcce--eeecccEEEEecc--CCCCCCCCCchhhchhh
Confidence 7776666553332 16677777887765 4433333222211122 7899999999999 78999999998876443
Q ss_pred CCCCcce-------eecc---cCCCCCC---CCCCeEEEEcCCCCHHHHHHHHHhh--------------cCeeEEEEec
Q 016088 166 ATGTGEV-------IHST---QYKNGKP---YGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLVIRS 218 (395)
Q Consensus 166 ~~~~~~~-------~~~~---~~~~~~~---~~~~~v~ViG~g~~a~e~a~~l~~~--------------g~~v~~~~r~ 218 (395)
++-.... +++. +.....+ .+--+++|||||++|+|+|..|+.. --+||++.-.
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 3332211 1110 1111111 1223589999999999999999963 1247777666
Q ss_pred CCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEE
Q 016088 219 PVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQV 298 (395)
Q Consensus 219 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 298 (395)
| .+|+..+..+..++ .+.+.+.+|.+
T Consensus 265 d-~iL~mFdkrl~~ya-----------------------------------------------------e~~f~~~~I~~ 290 (491)
T KOG2495|consen 265 D-HILNMFDKRLVEYA-----------------------------------------------------ENQFVRDGIDL 290 (491)
T ss_pred h-hHHHHHHHHHHHHH-----------------------------------------------------HHHhhhcccee
Confidence 6 44444433333222 44567789999
Q ss_pred ecC--ceEEeCCeEEecCC----cEEeCcEEEEccCCCCCccccccCCCCccCCCC--CCCCCCCCcccCCCCeEEEecc
Q 016088 299 LPG--IESIRGNEVIFENG----HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDG--IPKQSYPNHWKGKNGLYCVGLS 370 (395)
Q Consensus 299 ~~~--v~~~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~vya~Gd~ 370 (395)
..+ |..++++.++.+.+ +++++-.++|+||..+.+ +...+...+++.| .+.+|+..+..+.+||||+|||
T Consensus 291 ~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDc 368 (491)
T KOG2495|consen 291 DTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDC 368 (491)
T ss_pred ecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccc
Confidence 998 89999998887765 788999999999999865 4333333445555 6677756666899999999999
Q ss_pred cc--cc----cCccHHHHHHHHHhhcc
Q 016088 371 RK--GL----YGAAADAQNIADHINSI 391 (395)
Q Consensus 371 ~~--~~----~~a~~~a~~~a~~i~~~ 391 (395)
+. +. ..|.+||.++|+++...
T Consensus 369 a~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 369 ADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHH
Confidence 82 22 28999999999998754
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.94 E-value=1.5e-25 Score=210.44 Aligned_cols=284 Identities=20% Similarity=0.205 Sum_probs=206.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhc---CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
..+++|||.|++|..+...+++. -+.+++|-.++... |.+.+++. -++.--+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~--------------vl~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSS--------------VLAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeecc--------------ccCCCccHHHH
Confidence 35799999999999999999983 46899998777432 44433331 01111233455
Q ss_pred HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccc
Q 016088 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFC 163 (395)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~ 163 (395)
.-.-.++.+++++.. +.+.+|+.++.+.. . |++..+ ..+.||+||+||| |.|+++++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~k--~--V~t~~g--------~~~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRANK--V--VTTDAG--------RTVSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCcc--e--EEccCC--------cEeecceeEEecC--ccccccCCCCCCCC-
Confidence 555566778888777 99999999998662 2 777766 8899999999999 99999999999876
Q ss_pred cCCCCCcceeecccCCCCC-----CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcC
Q 016088 164 SSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYV 238 (395)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-----~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~ 238 (395)
.++....+.+.. ....++.+|||+|..|+|+|..|.+.|.+++|++-.+ +.+-+........+
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~l---- 192 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRL---- 192 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHH----
Confidence 455444443321 1235568999999999999999999999999998877 44333333222222
Q ss_pred ChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe----CCeEEe
Q 016088 239 PCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR----GNEVIF 312 (395)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~----~~~v~~ 312 (395)
+.+.+++.+++++.+ .+++. ..++.+
T Consensus 193 ------------------------------------------------L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~ 224 (793)
T COG1251 193 ------------------------------------------------LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRF 224 (793)
T ss_pred ------------------------------------------------HHHHHHhhcceeecccchhhhhcCcceeeEee
Confidence 234466667777666 22222 236999
Q ss_pred cCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccc-------cccCccHHHHHHH
Q 016088 313 ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK-------GLYGAAADAQNIA 385 (395)
Q Consensus 313 ~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~-------~~~~a~~~a~~~a 385 (395)
+||+.+++|.||+|+|.+||. .+..+.+...++ |.++.+ +++|+.|+|||+|.|+. .+..+..||+.+|
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~-ela~~aGlavnr-GIvvnd--~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a 300 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPND-ELAKEAGLAVNR-GIVVND--YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLA 300 (793)
T ss_pred cCCCcccceeEEEeccccccc-HhHHhcCcCcCC-Ceeecc--cccccCCCeeehhhHHHhcCccceehhHHHHHHHHHH
Confidence 999999999999999999998 566665333444 655544 99999999999999953 2558999999999
Q ss_pred HHhhccc
Q 016088 386 DHINSIL 392 (395)
Q Consensus 386 ~~i~~~l 392 (395)
+++....
T Consensus 301 ~hl~~~~ 307 (793)
T COG1251 301 DHLCGGE 307 (793)
T ss_pred HHhccCc
Confidence 9997653
No 79
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=2.2e-24 Score=221.78 Aligned_cols=279 Identities=15% Similarity=0.153 Sum_probs=184.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.+||+||||||||+++|..+++.|++|+|+|+.+.+||.+..... ..+ -.+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------~~~-g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------TID-GKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc---------------------ccC-CccHHHHHHH
Confidence 579999999999999999999999999999999988886643210 001 1123344444
Q ss_pred HHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEe--------ecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016088 87 LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (395)
Q Consensus 87 l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~ 157 (395)
+.+.++.+ ++.+ +.++.|.++.... ....+... .+...+.. ..++++.||+||| +.++.|+++
T Consensus 221 ~~~~l~~~~~v~v--~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~--~~i~a~~VILATG--a~~r~~pip 292 (985)
T TIGR01372 221 TVAELTAMPEVTL--LPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERL--WRIRAKRVVLATG--AHERPLVFA 292 (985)
T ss_pred HHHHHhcCCCcEE--EcCCEEEEEecCC--eEEEEEEeeeccccccCCccccce--EEEEcCEEEEcCC--CCCcCCCCC
Confidence 44444444 3554 8888888875311 11111100 00000011 3789999999999 778888888
Q ss_pred CccccccCCCCCcceeecc---cCCC-CCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCcccchhhHHHHH
Q 016088 158 GLSSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVHVLSREMVYLGL 232 (395)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~~~p~~~~~~~~ 232 (395)
|.+.. + ++... .+.. .....+++++|||+|.+|+|+|..|++.|. .|+++.+.+. ..+
T Consensus 293 G~~~p-------g-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~-~~~-------- 355 (985)
T TIGR01372 293 NNDRP-------G-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD-VSP-------- 355 (985)
T ss_pred CCCCC-------C-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc-hhH--------
Confidence 87653 2 22221 1111 122357999999999999999999999995 5788876651 110
Q ss_pred HHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--
Q 016088 233 VLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN-- 308 (395)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~-- 308 (395)
.+.+.+++.+|+++.+ +.++..+
T Consensus 356 -----------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~ 382 (985)
T TIGR01372 356 -----------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKR 382 (985)
T ss_pred -----------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCc
Confidence 0133456678888887 6777654
Q ss_pred --eEEec----CCcEEeCcEEEEccCCCCCccccccCCCCcc--CC--CCCCCCCCCCcccCCCCeEEEeccccc--ccC
Q 016088 309 --EVIFE----NGHSHHFDSIVFCTGFKRSTNVWLKGDDSML--ND--DGIPKQSYPNHWKGKNGLYCVGLSRKG--LYG 376 (395)
Q Consensus 309 --~v~~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~--~~--~g~~~~~~~~~~~~~~~vya~Gd~~~~--~~~ 376 (395)
+|.+. +++++++|.|++++|+.||. .+....+... +. .++.. .++.|+||++||+++. ...
T Consensus 383 v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~~~~~~ 455 (985)
T TIGR01372 383 VSGVAVARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGLFGLAA 455 (985)
T ss_pred EEEEEEEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCccCHHH
Confidence 35554 45678999999999999998 4544332221 11 11211 2568999999999864 448
Q ss_pred ccHHHHHHHHHhhccc
Q 016088 377 AAADAQNIADHINSIL 392 (395)
Q Consensus 377 a~~~a~~~a~~i~~~l 392 (395)
|..+|+.+|..|+..+
T Consensus 456 A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 456 ALADGAAAGAAAARAA 471 (985)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999987665
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.93 E-value=2.3e-25 Score=202.24 Aligned_cols=210 Identities=28% Similarity=0.387 Sum_probs=130.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-CCeEEEecCCCCCcccccCC-CCceeeccccc--cccCCCCCCCCCC--------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLAKQ--FCQLPHLPFPSSY-------- 74 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~~gg~~~~~~-~~~l~~~~~~~--~~~~~~~~~~~~~-------- 74 (395)
.+|+++||.||++|+.|..|...+ .++.++|+.+.+. |...+ .++..+.++.. +..+.+...+.++
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999876 8999999887543 76543 34444433321 1111111111111
Q ss_pred ---------CCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCC--CcEEEEEeecCCCCceeeEEEEeCEEEE
Q 016088 75 ---------PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 75 ---------~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
..++++.++.+|++|.+++++..+ +++++|++|.+..+. ..|.|.+.+.. |+. ..+.|+.||+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~--g~~--~~~~ar~vVl 153 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSD--GDG--ETYRARNVVL 153 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETT--S-E--EEEEESEEEE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecC--CCe--eEEEeCeEEE
Confidence 145789999999999999998545 999999999987743 25999986522 222 8999999999
Q ss_pred eecCCCCCCCCCCCCccccccCCCCCcceeecccCCCCC--CCCCCeEEEEcCCCCHHHHHHHHHhhcC--eeEEEEecC
Q 016088 144 ASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSP 219 (395)
Q Consensus 144 AtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~g~~a~e~a~~l~~~g~--~v~~~~r~~ 219 (395)
|+| ..|.+|........ ...++|+.++.... ...+++|+|||+|.||.|++..|.+.+. +|+++.|++
T Consensus 154 a~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 154 ATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999 78988864322111 24689998876543 4568999999999999999999999875 799999999
Q ss_pred CcccchhhHHHHHH
Q 016088 220 VHVLSREMVYLGLV 233 (395)
Q Consensus 220 ~~~~p~~~~~~~~~ 233 (395)
.+.|.++..+.+.
T Consensus 226 -~~~~~d~s~f~ne 238 (341)
T PF13434_consen 226 -GFFPMDDSPFVNE 238 (341)
T ss_dssp -S-EB----CCHHG
T ss_pred -ccCCCccccchhh
Confidence 6777776655443
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.90 E-value=1e-21 Score=173.32 Aligned_cols=355 Identities=21% Similarity=0.258 Sum_probs=211.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-CCeEEEecCCCCCcccccCC-CCceee-----------ccccccccCCCCC----
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRL-----------HLAKQFCQLPHLP---- 69 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~~gg~~~~~~-~~~l~~-----------~~~~~~~~~~~~~---- 69 (395)
.+|++.||-||+.|+.|+.|..++ .++..+|+++.+- |...+ .++..+ ..|...++|-++-
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 689999999999999999999876 6899999998653 65432 222222 1222222211100
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEE--EEEeecCCCCceeeEEEEeCEEEE
Q 016088 70 ----FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN--VKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
+...-..++++.++.+|++|.+.++. .. +++++|++|.......... +.+.++ ..++|+.||+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~--------~~y~ar~lVl 151 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG--------TVYRARNLVL 151 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC--------cEEEeeeEEE
Confidence 00111246899999999999999984 33 9999999774333223333 333332 6899999999
Q ss_pred eecCCCCCCCCCC-CCccccccCCCCCcceeecccCCCCC-CCCCCe-EEEEcCCCCHHHHHHHHHhh----cCeeEEEE
Q 016088 144 ASGETSNPFTPDI-RGLSSFCSSATGTGEVIHSTQYKNGK-PYGGKN-VLVVGSGNSGMEIALDLANH----AAKTSLVI 216 (395)
Q Consensus 144 AtG~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~ViG~g~~a~e~a~~l~~~----g~~v~~~~ 216 (395)
++| .+|.+|+. ..+. ...++|+.++.... +...++ |.|||+|.||.|+...|... ..++.|++
T Consensus 152 g~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~wit 221 (436)
T COG3486 152 GVG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221 (436)
T ss_pred ccC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeee
Confidence 999 79998863 2222 23689999887533 333444 99999999999999998853 33599999
Q ss_pred ecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhc--CC
Q 016088 217 RSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIK--SG 294 (395)
Q Consensus 217 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 294 (395)
|++ .++|.+...+. .+++.+...+.|-.......-.-..+.++.-........ ...+..-+.+.+. +.
T Consensus 222 R~~-gf~p~d~Skf~---~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti------~~Iy~~lY~~~l~~~~~ 291 (436)
T COG3486 222 RSS-GFLPMDYSKFG---LEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTI------EEIYDLLYEQSLGGRKP 291 (436)
T ss_pred ccC-CCCccccchhh---hhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHH------HHHHHHHHHHHhcCCCC
Confidence 999 66676655444 333333333332211111000000011100000000000 0011111222222 34
Q ss_pred cEEEecC--ceEEeCCe---EEec-------CCcEEeCcEEEEccCCCCCccccccCCC--CccCCCCCCCCCCCCccc-
Q 016088 295 QIQVLPG--IESIRGNE---VIFE-------NGHSHHFDSIVFCTGFKRSTNVWLKGDD--SMLNDDGIPKQSYPNHWK- 359 (395)
Q Consensus 295 ~i~~~~~--v~~~~~~~---v~~~-------~g~~~~~D~vi~atG~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~- 359 (395)
.+.+... +..++..+ +.+. ..+++++|.||+||||....|.++..+. ...+++|...++.++...
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~ 371 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLW 371 (436)
T ss_pred CeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeec
Confidence 5777776 77777664 4432 2356789999999999988887766553 234777888877554442
Q ss_pred ---CCCCeEEEecccc--cc-----cCccHHHHHHHHHhhcccCC
Q 016088 360 ---GKNGLYCVGLSRK--GL-----YGAAADAQNIADHINSILSP 394 (395)
Q Consensus 360 ---~~~~vya~Gd~~~--~~-----~~a~~~a~~~a~~i~~~l~~ 394 (395)
....||+.|-... |+ ..+.-.|..+++.+.+...+
T Consensus 372 ~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~ 416 (436)
T COG3486 372 DGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKY 416 (436)
T ss_pred CCCCcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCC
Confidence 2235999987633 32 24445555566666665543
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.1e-21 Score=189.66 Aligned_cols=303 Identities=17% Similarity=0.182 Sum_probs=187.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+|||+||+||+||-.|-+.|+.|+|+||.+..||..... +| ..-..+.+.+.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ip---------nmkldk~vv~r 1840 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IP---------NMKLDKFVVQR 1840 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CC---------ccchhHHHHHH
Confidence 5899999999999999999999999999999999999864432 22 22223345555
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
-.+...+-++.+ ..++++ ++- +.... -.-..|.+|+|+|. ..|+-.+++|-+..
T Consensus 1841 rv~ll~~egi~f--~tn~ei---------gk~-vs~d~---------l~~~~daiv~a~gs-t~prdlpv~grd~k---- 1894 (2142)
T KOG0399|consen 1841 RVDLLEQEGIRF--VTNTEI---------GKH-VSLDE---------LKKENDAIVLATGS-TTPRDLPVPGRDLK---- 1894 (2142)
T ss_pred HHHHHHhhCceE--Eeeccc---------ccc-ccHHH---------HhhccCeEEEEeCC-CCCcCCCCCCcccc----
Confidence 556666768776 677666 211 21111 23356899999996 47777778877642
Q ss_pred CCCcceeecccCC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCe-eEEEE---ecCCcccchhhH
Q 016088 167 TGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVI---RSPVHVLSREMV 228 (395)
Q Consensus 167 ~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~-v~~~~---r~~~~~~p~~~~ 228 (395)
|.. ...++. .....++|+|+|||||.+|.|+...-.++|++ |--+. --|....|...+
T Consensus 1895 ---gv~-fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npw 1970 (2142)
T KOG0399|consen 1895 ---GVH-FAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPW 1970 (2142)
T ss_pred ---ccH-HHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCC
Confidence 211 111111 01234589999999999999999999999986 43332 111112222222
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC--CcEEEecC--c--
Q 016088 229 YLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS--GQIQVLPG--I-- 302 (395)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~--v-- 302 (395)
+-..++++. +.-..........|+..|.+...+ -+.+ ++++-+.- |
T Consensus 1971 pqwprvfrv------dygh~e~~~~~g~dpr~y~vltk~----------------------f~~~~~g~v~gl~~vrvew 2022 (2142)
T KOG0399|consen 1971 PQWPRVFRV------DYGHAEAKEHYGSDPRTYSVLTKR----------------------FIGDDNGNVTGLETVRVEW 2022 (2142)
T ss_pred ccCceEEEe------ecchHHHHHHhCCCcceeeeeeee----------------------eeccCCCceeeEEEEEEEE
Confidence 111111111 111222233333344444332111 0111 11111111 1
Q ss_pred eEEeCCeEEec----CCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc---cc
Q 016088 303 ESIRGNEVIFE----NGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---LY 375 (395)
Q Consensus 303 ~~~~~~~v~~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~~ 375 (395)
++-+....++. +.+.+++|+||+|+||....+.....+....++++.+...++...+.++++||+|||.++ +.
T Consensus 2023 ~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvv 2102 (2142)
T KOG0399|consen 2023 EKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVV 2102 (2142)
T ss_pred EecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceEEE
Confidence 11111123332 235679999999999997665666666455688999998878888999999999999887 45
Q ss_pred CccHHHHHHHHHhhcc
Q 016088 376 GAAADAQNIADHINSI 391 (395)
Q Consensus 376 ~a~~~a~~~a~~i~~~ 391 (395)
+|+++++.+|+.+...
T Consensus 2103 wai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2103 WAIQEGRQAARQVDEL 2118 (2142)
T ss_pred EEehhhhHHHHHHHHH
Confidence 9999999999998753
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=173.75 Aligned_cols=295 Identities=19% Similarity=0.204 Sum_probs=183.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+||||||+|+++|..|.+.|+.|+++|+.+..||..... .+.|....++.+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~ 178 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDR 178 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHH
Confidence 4799999999999999999999999999999999988864432 2344455678888
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
..+++++.++++ +.++++- . .++... -.-.+|.+++|+|. ..|+..+++|.+..
T Consensus 179 ~i~~l~~~Gv~~--~~~~~vG---------~-~it~~~---------L~~e~Dav~l~~G~-~~~~~l~i~g~d~~---- 232 (457)
T COG0493 179 RLELLERSGVEF--KLNVRVG---------R-DITLEE---------LLKEYDAVFLATGA-GKPRPLDIPGEDAK---- 232 (457)
T ss_pred HHHHHHHcCeEE--EEcceEC---------C-cCCHHH---------HHHhhCEEEEeccc-cCCCCCCCCCcCCC----
Confidence 888888888666 8887772 1 133322 22244999999996 57887788887632
Q ss_pred CCCcceeecccCC--------------CCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecCCc-ccchhhHHH
Q 016088 167 TGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVIRSPVH-VLSREMVYL 230 (395)
Q Consensus 167 ~~~~~~~~~~~~~--------------~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~~~-~~p~~~~~~ 230 (395)
.+....++. ......+|+++|||+|.+|+|++....+.|+ +|+.+.+.... -.+......
T Consensus 233 ----gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~ 308 (457)
T COG0493 233 ----GVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWA 308 (457)
T ss_pred ----cchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccc
Confidence 222222211 1122235999999999999999999999998 48888643311 000000000
Q ss_pred HHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhh--cCCcEEEecC--ceEEe
Q 016088 231 GLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKI--KSGQIQVLPG--IESIR 306 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--v~~~~ 306 (395)
...... .....+.. ..+...-.+.+ ++++|.-... +....
T Consensus 309 ~~~~~~--------------------~a~eeg~~----------------~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~ 352 (457)
T COG0493 309 AQLEVR--------------------SAGEEGVE----------------RLPFVQPKAFIGNEGGRVTGVKFGRVEPGE 352 (457)
T ss_pred hhhhhh--------------------hhhhcCCc----------------ccccCCceeEeecCCCcEeeeecccccccC
Confidence 000000 00000000 00000001111 1233332211 11111
Q ss_pred C-------CeEEecCC-cEEeCcEEEEccCCCCCcccccc-CCCCccCCCCCCCCCCCCcccCCCCeEEEeccccc---c
Q 016088 307 G-------NEVIFENG-HSHHFDSIVFCTGFKRSTNVWLK-GDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRKG---L 374 (395)
Q Consensus 307 ~-------~~v~~~~g-~~~~~D~vi~atG~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~~---~ 374 (395)
. ..+..... ..+++|.|+.++|+.++...+.. ......++.|.+.++....+|+.|++||.||+.++ +
T Consensus 353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~v 432 (457)
T COG0493 353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALV 432 (457)
T ss_pred cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhh
Confidence 1 11222222 34589999999999998654332 22245688899999954448999999999999885 5
Q ss_pred cCccHHHHHHHHHhhcc
Q 016088 375 YGAAADAQNIADHINSI 391 (395)
Q Consensus 375 ~~a~~~a~~~a~~i~~~ 391 (395)
..|+.+++.+|+.|..+
T Consensus 433 v~ai~eGr~aak~i~~~ 449 (457)
T COG0493 433 VWAIAEGREAAKAIDKE 449 (457)
T ss_pred hhHHhhchHHHHhhhHH
Confidence 59999999999999843
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.81 E-value=8.1e-19 Score=166.50 Aligned_cols=276 Identities=19% Similarity=0.219 Sum_probs=179.5
Q ss_pred EEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCC-CCCHHHHHHH
Q 016088 10 VIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQFIEY 86 (395)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (395)
++|||+|.+|+++|..+.+. +.+++++...+..... ..+.+..... .....++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY---------------------RCPLSLYVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC---------------------CCccchHHhcccCCHHHhccc
Confidence 58999999999999998885 4578877766532100 0000000000 0111111111
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
.. .....++.. +..++|++++... .. +.+.+ ..+.||++|+||| ..|..++ +..
T Consensus 60 ~~-~~~~~~i~~--~~~~~v~~id~~~--~~--v~~~~---------g~~~yd~LvlatG--a~~~~~~--~~~------ 113 (415)
T COG0446 60 PR-FNRATGIDV--RTGTEVTSIDPEN--KV--VLLDD---------GEIEYDYLVLATG--ARPRPPP--ISD------ 113 (415)
T ss_pred ch-hHHhhCCEE--eeCCEEEEecCCC--CE--EEECC---------CcccccEEEEcCC--CcccCCC--ccc------
Confidence 11 113445555 8899999998755 32 66655 5678999999999 6777665 111
Q ss_pred CCCcceeecccCCCCCC-----CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh-HHHHHHHhhcCCh
Q 016088 167 TGTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM-VYLGLVLLRYVPC 240 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~~~-----~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~-~~~~~~~~~~~~~ 240 (395)
............... ...++++|+|+|..|+++|..+...|.+|+++...+ +.+++.. ..+.
T Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~--------- 181 (415)
T COG0446 114 --WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVA--------- 181 (415)
T ss_pred --cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHH---------
Confidence 111222222211111 115899999999999999999999999999999988 4444332 1111
Q ss_pred hhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe-------EE
Q 016088 241 GGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE-------VI 311 (395)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~-------v~ 311 (395)
..+.+.+++.+|+++.+ +..++... +.
T Consensus 182 --------------------------------------------~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~ 217 (415)
T COG0446 182 --------------------------------------------EELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVV 217 (415)
T ss_pred --------------------------------------------HHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEE
Confidence 11244566667888776 77777653 57
Q ss_pred ecCCcEEeCcEEEEccCCCCCccccccCCC-CccCCCCCCCCCCCCcccC-CCCeEEEeccccc-------------ccC
Q 016088 312 FENGHSHHFDSIVFCTGFKRSTNVWLKGDD-SMLNDDGIPKQSYPNHWKG-KNGLYCVGLSRKG-------------LYG 376 (395)
Q Consensus 312 ~~~g~~~~~D~vi~atG~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~-~~~vya~Gd~~~~-------------~~~ 376 (395)
..++..+++|.+++++|.+||. .+..... ......|++.+| ..++++ .++||++||++.. ...
T Consensus 218 ~~~~~~~~~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~ 295 (415)
T COG0446 218 GIDGEEIKADLVIIGPGERPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAI 295 (415)
T ss_pred EeCCcEEEeeEEEEeecccccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhh
Confidence 7888999999999999999996 4554442 266788899999 566676 8999999998543 116
Q ss_pred ccHHHHHHHHHhhc
Q 016088 377 AAADAQNIADHINS 390 (395)
Q Consensus 377 a~~~a~~~a~~i~~ 390 (395)
+..+++.++.++..
T Consensus 296 a~~~~~i~~~~~~~ 309 (415)
T COG0446 296 AVAAGRIAAENIAG 309 (415)
T ss_pred HhhhhHHHHHHhcc
Confidence 77777777777764
No 85
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.2e-17 Score=145.61 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=102.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
...+|+|||+||||+.+|..|.++ +.+|+|+|+.+...|..+... .|.++.-..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvKnv 75 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVKNV 75 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchhhH
Confidence 356999999999999999999985 579999999997777555321 1233444555
Q ss_pred HHHHHHHHHhcCCcceeeeeeeE-EEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcccc
Q 016088 84 IEYLDHYVSHFNIVPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSF 162 (395)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~ 162 (395)
..-+...+++..+.. ..|.+| .+ +.+.. -+-.||.||+|.|+ ..++...|||.+..
T Consensus 76 intFt~~aE~~rfsf--~gNv~vG~d-----------vsl~e---------L~~~ydavvLaYGa-~~dR~L~IPGe~l~ 132 (468)
T KOG1800|consen 76 INTFTKTAEHERFSF--FGNVKVGRD-----------VSLKE---------LTDNYDAVVLAYGA-DGDRRLDIPGEELS 132 (468)
T ss_pred HHHHHHHhhccceEE--Eecceeccc-----------ccHHH---------HhhcccEEEEEecC-CCCcccCCCCcccc
Confidence 666666676655544 445444 22 22211 34468999999997 57888899988732
Q ss_pred ccCCCCCcceeecccCC-----------CCCCCCCCeEEEEcCCCCHHHHHHHHHh
Q 016088 163 CSSATGTGEVIHSTQYK-----------NGKPYGGKNVLVVGSGNSGMEIALDLAN 207 (395)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~ViG~g~~a~e~a~~l~~ 207 (395)
.++....+. ...++...+++|||.|..|+|+|..|..
T Consensus 133 --------~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 133 --------GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred --------cceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 233322221 1234568899999999999999999874
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.76 E-value=2.4e-16 Score=146.32 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=98.1
Q ss_pred CCCeEEEECCChHHHHHHHHHh-hcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHH
Q 016088 6 AGVEVIIVGAGPSGLATAACLS-LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~-~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (395)
..++|+||||||||+++|..|+ +.|++|+|||+.+.+||.++...- +..+.-+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 3578999999999999999875 569999999999999998775311 1223445666
Q ss_pred HHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC-------
Q 016088 85 EYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR------- 157 (395)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~------- 157 (395)
..+...+...++.. ..+..|- . .++... -.-.||.||+|+|.. +.-+++.
T Consensus 95 ~~f~~~~~~~~v~f--~gnv~VG-----~-----Dvt~ee---------L~~~YDAVIlAtGA~--~l~ipi~~~~~~~~ 151 (506)
T PTZ00188 95 KTFDPVFLSPNYRF--FGNVHVG-----V-----DLKMEE---------LRNHYNCVIFCCGAS--EVSIPIGQQDEDKA 151 (506)
T ss_pred HHHHHHHhhCCeEE--EeeeEec-----C-----ccCHHH---------HHhcCCEEEEEcCCC--CCCCCcccccceee
Confidence 66666555544443 3333331 0 022221 223789999999953 3222211
Q ss_pred ---Cccc---cccCCCCCcceeecccCCCC----CC------C-CCCeEEEEcCCCCHHHHHHHHHh-------------
Q 016088 158 ---GLSS---FCSSATGTGEVIHSTQYKNG----KP------Y-GGKNVLVVGSGNSGMEIALDLAN------------- 207 (395)
Q Consensus 158 ---g~~~---~~~~~~~~~~~~~~~~~~~~----~~------~-~~~~v~ViG~g~~a~e~a~~l~~------------- 207 (395)
|.+. .........-+.++....+. .. + ..++++|||.|+.|+|+|..|+.
T Consensus 152 ~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~ 231 (506)
T PTZ00188 152 VSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSD 231 (506)
T ss_pred eccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHH
Confidence 2210 10000000001111111100 01 1 35789999999999999998642
Q ss_pred -------hc-CeeEEEEecC
Q 016088 208 -------HA-AKTSLVIRSP 219 (395)
Q Consensus 208 -------~g-~~v~~~~r~~ 219 (395)
.. .+|+++.|+.
T Consensus 232 aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 232 YLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred HHHHHHhCCCcEEEEEEecC
Confidence 12 2699999987
No 87
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.76 E-value=1.9e-17 Score=163.89 Aligned_cols=199 Identities=11% Similarity=0.081 Sum_probs=106.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc--c-----CC-CCceeeccccccccCCCCCCCCCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK--K-----YS-YDRLRLHLAKQFCQLPHLPFPSSYPMF 77 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~--~-----~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (395)
..++|+||||||||+++|..|++.|++|+++|+.+..|+... . .. ++.+.-..+...-.+..+. .+ +
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yG----Ip-~ 456 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYG----IT-V 456 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccC----cc-c
Confidence 468999999999999999999999999999998765443211 0 00 0001111110000011111 11 1
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016088 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (395)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~ 157 (395)
.-.....+.++...+ .+..++++.+..+ .. . ++..+- ....+|.||+|||. ..|+.++++
T Consensus 457 R~~k~~l~~i~~il~-~g~~v~~~~gv~l---G~-----d--it~edl--------~~~gyDAV~IATGA-~kpr~L~IP 516 (1028)
T PRK06567 457 RWDKNNLDILRLILE-RNNNFKYYDGVAL---DF-----N--ITKEQA--------FDLGFDHIAFCIGA-GQPKVLDIE 516 (1028)
T ss_pred cchHHHHHHHHHHHh-cCCceEEECCeEE---Cc-----c--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCC
Confidence 111223333333222 2333422334432 10 0 222111 24568999999994 268888898
Q ss_pred CccccccCCCCCcceeecccCCCC-------------CCCCCCeEEEEcCCCCHHHHHHHHHh---hcCeeEEEEecCCc
Q 016088 158 GLSSFCSSATGTGEVIHSTQYKNG-------------KPYGGKNVLVVGSGNSGMEIALDLAN---HAAKTSLVIRSPVH 221 (395)
Q Consensus 158 g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~ViG~g~~a~e~a~~l~~---~g~~v~~~~r~~~~ 221 (395)
|.+.. .++...++... ....+++|+|||||.+|+|+|..... .+.++++....+ .
T Consensus 517 Geda~--------GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~-~ 587 (1028)
T PRK06567 517 NFEAK--------GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIE-K 587 (1028)
T ss_pred CccCC--------CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhh-h
Confidence 87642 23333332111 01126789999999999999996654 234444444333 4
Q ss_pred ccchhhHHHHHHHhhcC
Q 016088 222 VLSREMVYLGLVLLRYV 238 (395)
Q Consensus 222 ~~p~~~~~~~~~~~~~~ 238 (395)
.+|..+.+.+..+...+
T Consensus 588 ~~~~~d~eia~~f~~h~ 604 (1028)
T PRK06567 588 DLTEEDKEIAEEFIAHA 604 (1028)
T ss_pred hcccccHHHHHHHHHHH
Confidence 45666665555444443
No 88
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.75 E-value=4e-18 Score=150.10 Aligned_cols=301 Identities=16% Similarity=0.219 Sum_probs=183.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCcccccCCCCceeeccccccccCCC------CCCCCCC---
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPH------LPFPSSY--- 74 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~--- 74 (395)
.+...+|||+|.+..+++...... +.++.+|..++.+. +++...++.++...+ +.+..|.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---------YmRPPLSKELW~~~dpn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---------YMRPPLSKELWWYGDPNSAKKLRFKQWSGKE 247 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------ccCCCcchhceecCCCChhhheeecccCCcc
Confidence 356789999999998888777654 56888888776432 222222222222211 0111111
Q ss_pred --------CCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016088 75 --------PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (395)
Q Consensus 75 --------~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG 146 (395)
..|.+.+++-+ +..-++.+ ..+.+|+.++..+ .. |++.++ .+|.||.|+||||
T Consensus 248 Rsiffepd~FfvspeDLp~-----~~nGGvAv--l~G~kvvkid~~d--~~--V~LnDG--------~~I~YdkcLIATG 308 (659)
T KOG1346|consen 248 RSIFFEPDGFFVSPEDLPK-----AVNGGVAV--LRGRKVVKIDEED--KK--VILNDG--------TTIGYDKCLIATG 308 (659)
T ss_pred ceeEecCCcceeChhHCcc-----cccCceEE--EeccceEEeeccc--Ce--EEecCC--------cEeehhheeeecC
Confidence 12333333322 22235555 7888888887654 44 888887 8999999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcceeecc-cCCCCC--CCCCCeEEEEcCCCCHHHHHHHHHhh----cCeeEEEEecC
Q 016088 147 ETSNPFTPDIRGLSSFCSSATGTGEVIHST-QYKNGK--PYGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVIRSP 219 (395)
Q Consensus 147 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~v~ViG~g~~a~e~a~~l~~~----g~~v~~~~r~~ 219 (395)
-+|...+. +++....+++.-.++++- +|...+ ....+.|.|||+|..|-|+|..|.+. |.+|+-+....
T Consensus 309 --~~Pk~l~~--~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek 384 (659)
T KOG1346|consen 309 --VRPKKLQV--FEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK 384 (659)
T ss_pred --cCcccchh--hhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc
Confidence 57765543 111100111122233322 111111 11247899999999999999999864 55677666544
Q ss_pred CcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEe
Q 016088 220 VHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVL 299 (395)
Q Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 299 (395)
+ ++...+.+| +..+..+.+++++|.++
T Consensus 385 -~-------nm~kiLPey---------------------------------------------ls~wt~ekir~~GV~V~ 411 (659)
T KOG1346|consen 385 -Y-------NMEKILPEY---------------------------------------------LSQWTIEKIRKGGVDVR 411 (659)
T ss_pred -C-------ChhhhhHHH---------------------------------------------HHHHHHHHHHhcCceec
Confidence 1 111111111 11223567888999999
Q ss_pred cC--ceEEeCC--e--EEecCCcEEeCcEEEEccCCCCCccccccCCCCccC-CCCCCCCCCCCcccCCCCeEEEecccc
Q 016088 300 PG--IESIRGN--E--VIFENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLN-DDGIPKQSYPNHWKGKNGLYCVGLSRK 372 (395)
Q Consensus 300 ~~--v~~~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~vya~Gd~~~ 372 (395)
++ |..+... . +.|+||.++..|+|++|+|-.||. .+....+..++ .-|...+|.. .....|||++||++.
T Consensus 412 pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvnae--L~ar~NvwvAGdaac 488 (659)
T KOG1346|consen 412 PNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNAE--LKARENVWVAGDAAC 488 (659)
T ss_pred cchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeehe--eecccceeeecchhh
Confidence 98 5555433 2 667899999999999999999999 56555544444 4577788833 344589999999854
Q ss_pred c------------ccCccHHHHHHHHHhhcccCC
Q 016088 373 G------------LYGAAADAQNIADHINSILSP 394 (395)
Q Consensus 373 ~------------~~~a~~~a~~~a~~i~~~l~~ 394 (395)
. -..+...++.+.+|+...-+|
T Consensus 489 F~D~~LGrRRVehhdhavvSGRLAGENMtgAakp 522 (659)
T KOG1346|consen 489 FEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKP 522 (659)
T ss_pred hhcccccceeccccccceeeceecccccccccCC
Confidence 2 116777788888887766554
No 89
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.7e-15 Score=137.97 Aligned_cols=358 Identities=18% Similarity=0.219 Sum_probs=200.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcC---CCeEEEecCCCCCc-ccccCCCCceeeccccccccCC--CCC------------
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQLP--HLP------------ 69 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~---~~v~vie~~~~~gg-~~~~~~~~~l~~~~~~~~~~~~--~~~------------ 69 (395)
++|+|||+|++|+..|.+|.+.- ..|.|||+.+.+|. ..+...-+...+|++...++.. ..|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 23999999988874 5555444455555555443332 211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHhc----CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEe
Q 016088 70 -------FPSSYPMFVSRAQFIEYLDHYVSHF----NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (395)
Q Consensus 70 -------~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (395)
...+-+.|+++..+-+|+.+....+ ...--.....+.+++...+..+.|.+...++ ....|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceeee
Confidence 1122345777877777776655433 2110125677778887775457777888776 77889
Q ss_pred CEEEEeecCCCCCCCCCCCCccccccCCCCCcc-eeecccC----CCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcCe--
Q 016088 139 RFLVVASGETSNPFTPDIRGLSSFCSSATGTGE-VIHSTQY----KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-- 211 (395)
Q Consensus 139 d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~-- 211 (395)
|-+|+|||+ +-|..+.. . ..+ .+. -+....+ .+..+ ...+|+|+|+|.+-+|....+.+.|.+
T Consensus 154 d~~Vlatgh-~~~~~~~~-~-~~~------~~~~~~ia~~~~~~~ld~v~-~~drVli~GsgLt~~D~v~~l~~~gh~g~ 223 (474)
T COG4529 154 DIIVLATGH-SAPPADPA-A-RDL------KGSPRLIADPYPANALDGVD-ADDRVLIVGSGLTSIDQVLVLRRRGHKGP 223 (474)
T ss_pred eEEEEeccC-CCCCcchh-h-hcc------CCCcceeccccCCccccccc-CCCceEEecCCchhHHHHHHHhccCCccc
Confidence 999999996 22322221 1 111 111 1111111 11122 255699999999999999999998865
Q ss_pred eEEEEecCCcccchhhH------------HHHHH---Hhhc------------CChhhH-H----HHHHHHHHHHhcchh
Q 016088 212 TSLVIRSPVHVLSREMV------------YLGLV---LLRY------------VPCGGV-D----TLMVMLSRLVYGDLS 259 (395)
Q Consensus 212 v~~~~r~~~~~~p~~~~------------~~~~~---~~~~------------~~~~~~-~----~~~~~~~~~~~~~~~ 259 (395)
||.+.|+. +.|.... ..... +... ..+.-+ + ...+.++ .+...+
T Consensus 224 It~iSRrG--l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq--~l~~~e 299 (474)
T COG4529 224 ITAISRRG--LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQ--NLPAVE 299 (474)
T ss_pred eEEEeccc--cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHH--hCCHHH
Confidence 99999986 2221111 00000 0011 111000 0 1111111 111111
Q ss_pred hcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCC----eEEec----CC-cEEeCcEEEEccCC
Q 016088 260 KYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFE----NG-HSHHFDSIVFCTGF 329 (395)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~----~v~~~----~g-~~~~~D~vi~atG~ 329 (395)
+.... -...+++.--+....|.+.......+.++.++++.+ +..++.. .|.+. +. +.+++|.||.|+|.
T Consensus 300 r~rf~-rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~ 378 (474)
T COG4529 300 RRRFE-RHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAGRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGP 378 (474)
T ss_pred HHHHH-HhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecCceeecccccCCceEEeeccccCccceeeeeEEEEcCCc
Confidence 11111 111222222222345666677777788899999988 5544433 24442 22 46799999999999
Q ss_pred CCCcccccc--------CCCCcc--CCCCCCCCCCCCcc-----cCCCCeEEEeccccccc-------CccHHHHHHHHH
Q 016088 330 KRSTNVWLK--------GDDSML--NDDGIPKQSYPNHW-----KGKNGLYCVGLSRKGLY-------GAAADAQNIADH 387 (395)
Q Consensus 330 ~~~~~~~~~--------~~~~~~--~~~g~~~~~~~~~~-----~~~~~vya~Gd~~~~~~-------~a~~~a~~~a~~ 387 (395)
.+... +.. +.+.+. .....+.|+++... +..+++|++|..+.+.. ....++..+|..
T Consensus 379 ~~~~~-~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~ 457 (474)
T COG4529 379 AHDNS-LSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQ 457 (474)
T ss_pred CcCCC-ccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHH
Confidence 87652 211 111111 12223344433332 24689999999987742 666777777777
Q ss_pred hh
Q 016088 388 IN 389 (395)
Q Consensus 388 i~ 389 (395)
|.
T Consensus 458 l~ 459 (474)
T COG4529 458 LA 459 (474)
T ss_pred Hh
Confidence 77
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.70 E-value=2.9e-15 Score=143.21 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=105.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCC-cc-cccCC-CCceeecccc--------ccccCCCCC-----
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYS-YDRLRLHLAK--------QFCQLPHLP----- 69 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~g-g~-~~~~~-~~~l~~~~~~--------~~~~~~~~~----- 69 (395)
++|+|||||++|+++|..|.+.+ .+|+|||+...+| |. |+... ...+.++... .+..+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 48999999999999999998864 5899999988777 43 44311 1112222111 111110000
Q ss_pred ----C---CCCCCCCCCHHHHHHHHHHHHHh-------cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 70 ----F---PSSYPMFVSRAQFIEYLDHYVSH-------FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 70 ----~---~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
. ......|+++..+-+|+++.... .++.+.++.+++|+++...+ +.|.|++.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg-------~~ 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL-------PS 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC-------eE
Confidence 0 00112466666665555543332 23334457788999998765 66888775421 67
Q ss_pred EEeCEEEEeecCCCCCCCCCCCCccccccCCCCCcceeecccCC--CCCCCCCCeEEEEcCCCCHHHHHHHHHhh
Q 016088 136 YSGRFLVVASGETSNPFTPDIRGLSSFCSSATGTGEVIHSTQYK--NGKPYGGKNVLVVGSGNSGMEIALDLANH 208 (395)
Q Consensus 136 ~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~ViG~g~~a~e~a~~l~~~ 208 (395)
+.+|+||+|+|.. .|..+ .+...| ....|. ......+.+|+|+|.|.+++|++..|...
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y-----------i~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY-----------FPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc-----------cCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 8999999999952 22211 111111 111111 11122368999999999999999998855
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.65 E-value=4.7e-17 Score=138.50 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=73.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH---
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (395)
||+|||||++|+++|..|++.+.+++++|+.+..+..... .+.... .........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------~~~~~~----------~~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------IPSPLL----------VEIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------HHHHHH----------HHHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------cccccc----------ccccccccccccccc
Confidence 7999999999999999999999999999876632110000 000000 000000001110
Q ss_pred -HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCc-----EEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCc
Q 016088 86 -YLDHYVSHFNIVPSIRYQRSVESASYDEATNM-----WNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGL 159 (395)
Q Consensus 86 -~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~ 159 (395)
.+.+.+...+++. ++++++.+++... +. +.+..... ++. ..+.||+||+||| +.|+.|.++|.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~~~---~~~--~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPES--KRVVCPAVTIQVVET---GDG--REIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEEST--TEEEETCEEEEEEET---TTE--EEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEE--eeccccccccccc--cccccCcccceeecc---CCc--eEecCCeeeecCc--cccceeecCCC
Confidence 2222234456554 7899999998765 32 22322111 111 8899999999999 78888888876
No 92
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.62 E-value=3.4e-15 Score=124.08 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=145.8
Q ss_pred EEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 10 VIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
.+|||||+||.+||..|+.+. .+++++...+..-.. ..-..+.+|+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~yl 49 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQYL 49 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHHH
Confidence 589999999999999999864 478888876632110 0111222332
Q ss_pred HHHHHhcCCcc------eeeeeeeEEEeE-EeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCcc
Q 016088 88 DHYVSHFNIVP------SIRYQRSVESAS-YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLS 160 (395)
Q Consensus 88 ~~~~~~~~~~~------~i~~~~~V~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~ 160 (395)
. +++++. .-.+++-+.++. ++. ....+++.++ ..+.|++|++|+| .+|..-. .+.+
T Consensus 50 e----kfdv~eq~~~elg~~f~~~~~~v~~~~s--~ehci~t~~g--------~~~ky~kKOG~tg--~kPklq~-E~~n 112 (334)
T KOG2755|consen 50 E----KFDVKEQNCHELGPDFRRFLNDVVTWDS--SEHCIHTQNG--------EKLKYFKLCLCTG--YKPKLQV-EGIN 112 (334)
T ss_pred H----hcCccccchhhhcccHHHHHHhhhhhcc--ccceEEecCC--------ceeeEEEEEEecC--CCcceee-cCCC
Confidence 2 222211 001111111111 111 3344777776 7899999999999 7776432 2222
Q ss_pred ccccCCCCCcceeecccCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHH-HH
Q 016088 161 SFCSSATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGL-VL 234 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~-~~ 234 (395)
. .++...+... -...+.|.|+|+|.|-+++|.+..+.. .+|+|....+ +....+..+-++ ++
T Consensus 113 ~---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~-~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 113 P---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDE-GISATFFDPGAAEFY 180 (334)
T ss_pred c---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecch-hhhhcccCccHHHHh
Confidence 2 2333222221 223458999999999999999998864 5789998877 333222111111 11
Q ss_pred hhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcCCcE--------EEecC-ceEE
Q 016088 235 LRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQI--------QVLPG-IESI 305 (395)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~-v~~~ 305 (395)
.--+....-.+. -..+++.+- +.+ ....-.+..+.+.+++...+.-.++ ..... +..+
T Consensus 181 ~i~l~a~~s~~~-iaiKh~q~i--ea~----------pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~ 247 (334)
T KOG2755|consen 181 DINLRADRSTRI-IAIKHFQYI--EAF----------PKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITS 247 (334)
T ss_pred Hhhhhcccccch-hhhhhhhhh--hhc----------CcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeee
Confidence 110100000000 000000000 000 0000011122222222222211111 11111 0000
Q ss_pred -eC-C--eEEe------cCCcEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCCcccCCCCeEEEecccc
Q 016088 306 -RG-N--EVIF------ENGHSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHWKGKNGLYCVGLSRK 372 (395)
Q Consensus 306 -~~-~--~v~~------~~g~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vya~Gd~~~ 372 (395)
+. + .++. .+ ..+.+|.+++|||..||..-+.... .-..++|.+.++ +.+.|+.|++||+||.+.
T Consensus 248 ~d~~d~~sv~~~~~ek~~~-~qlt~d~ivSatgvtpn~e~~~~~~-lq~~edggikvd-d~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 248 TDTSDNLSVHYMDKEKMAD-NQLTCDFIVSATGVTPNSEWAMNKM-LQITEDGGIKVD-DAMETSLPDVFAAGDVCT 321 (334)
T ss_pred ccchhhccccccccccccc-ceeeeeEEEeccccCcCceEEecCh-hhhccccCeeeh-hhccccccceeeecceec
Confidence 00 0 1221 22 2467999999999999996333333 456788999998 688899999999999876
No 93
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.56 E-value=2.8e-13 Score=122.21 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=37.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
..+++|||||++|++||+.|++.|+++.++|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 368999999999999999999999999999999999985
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.51 E-value=5.9e-13 Score=114.00 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred hhhhhcCCcEEEecC--ceEEeCC--eEEec----CC--cEEeCcEEEEccCCCCCccccccCCCCccCCCCCCCCCCCC
Q 016088 287 TCEKIKSGQIQVLPG--IESIRGN--EVIFE----NG--HSHHFDSIVFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPN 356 (395)
Q Consensus 287 ~~~~~~~~~i~~~~~--v~~~~~~--~v~~~----~g--~~~~~D~vi~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 356 (395)
+.+.+++.+|++... ..++..+ ..+++ .| ++++++++-+.+...+. ..+... .+.|+.||+.||...
T Consensus 242 L~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p--e~l~~s-~~adktGfvdVD~~T 318 (446)
T KOG3851|consen 242 LEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP--EVLANS-DLADKTGFVDVDQST 318 (446)
T ss_pred HHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh--hhhhcC-cccCcccceecChhh
Confidence 445556666666554 3333322 22332 24 46789999999999874 456655 478999999999766
Q ss_pred cc-cCCCCeEEEeccccccc-----CccHHHHHHHHHhhcc
Q 016088 357 HW-KGKNGLYCVGLSRKGLY-----GAAADAQNIADHINSI 391 (395)
Q Consensus 357 ~~-~~~~~vya~Gd~~~~~~-----~a~~~a~~~a~~i~~~ 391 (395)
.+ +..||||++|||.+.+. .+..|+..+-+++...
T Consensus 319 lQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~ 359 (446)
T KOG3851|consen 319 LQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQV 359 (446)
T ss_pred hccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHH
Confidence 66 67999999999988765 3344455555555443
No 95
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=8.2e-14 Score=124.03 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=96.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc--------cccc---CCCCceeeccc---cccc----cCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS--------IWKK---YSYDRLRLHLA---KQFC----QLPHL 68 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg--------~~~~---~~~~~l~~~~~---~~~~----~~~~~ 68 (395)
.+||+|||||+||++||..++++|.+|+|||+.+.+|. .++- ..++.+..+.| .... .|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 58999999999999999999999999999999997763 3331 11222222222 1110 11000
Q ss_pred -----------CCC-----CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCcee
Q 016088 69 -----------PFP-----SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (395)
Q Consensus 69 -----------~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (395)
.+. .-+|.-.....+.+.+...+++.++++ +.+++|.+++.++ ..|.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 000 002222346789999999999999887 9999999999876 7888999885
Q ss_pred eEEEEeCEEEEeecCCCCCCC
Q 016088 133 EEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~~p~~ 153 (395)
.+++||.+|+|||..|.|..
T Consensus 152 -~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 -ETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred -CEEEccEEEEecCCcCCCCC
Confidence 68999999999998877743
No 96
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.44 E-value=4.8e-12 Score=118.00 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
++||+|||+|.+|+++|..|+++|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999864
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.41 E-value=2.1e-12 Score=119.99 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=76.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc--------cccc-C---CCCceeec---cccccc----cC---
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y---SYDRLRLH---LAKQFC----QL--- 65 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg--------~~~~-~---~~~~l~~~---~~~~~~----~~--- 65 (395)
|||+|||||+||++||..|++.|.+|+|+|+.+..|. .++- + ........ .+..+. .+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999987763 2221 0 00111111 000000 00
Q ss_pred --------CCCCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCcee
Q 016088 66 --------PHLPFP-----SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (395)
Q Consensus 66 --------~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (395)
...+.. .-+|.-....++.+.+...+++.++++ +++++|.++..++ ++.|.|.+.+.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 000000 001122245788899999899989887 9999999999876 34588998433
Q ss_pred eEEEEeCEEEEeecCCCCCC
Q 016088 133 EEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~~p~ 152 (395)
..+.||.||+|||..+.|.
T Consensus 151 -~~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 -GEYEADAVILATGGKSYPK 169 (409)
T ss_dssp -EEEEESEEEE----SSSGG
T ss_pred -ccccCCEEEEecCCCCccc
Confidence 8999999999999766654
No 98
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=1.1e-11 Score=100.46 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=90.8
Q ss_pred EEECCChHHHHHHHHHhhc-----CCCeEEEecCCCC-CcccccCCCCceeeccccccccCCC-CC--------------
Q 016088 11 IIVGAGPSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQLPH-LP-------------- 69 (395)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~-----~~~v~vie~~~~~-gg~~~~~~~~~l~~~~~~~~~~~~~-~~-------------- 69 (395)
+|||+|++|++++..|.++ ..+|+|||+.+.. |+.|.....+...+|.+...+.... .+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 3589999997664 3577765456666666655554422 11
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHhc------CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEE
Q 016088 70 --FPSSYPMFVSRAQFIEYLDHYVSHF------NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFL 141 (395)
Q Consensus 70 --~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 141 (395)
.......|+++..+-+|+++..+.. ++.++ +...+|+++.... +.|.|.+.++ ..+.+|.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g--------~~~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG--------QSIRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC--------CEEEeCEE
Confidence 0112246889999999888766553 22321 3567999999876 5688888776 77899999
Q ss_pred EEeecC
Q 016088 142 VVASGE 147 (395)
Q Consensus 142 VlAtG~ 147 (395)
|+|||.
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 99
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.28 E-value=6.8e-11 Score=103.60 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc-ccccC-CCCceeeccc-cccccCCCCCCCCCC--CCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQFCQLPHLPFPSSY--PMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg-~~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 81 (395)
.+||+|||||++|+++|..|++.|++|+|+|+.+.+|| .|... .++......+ ..++.-...++.... .....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 58999999999999999999999999999999987765 45422 1221111100 000000011111100 1124567
Q ss_pred HHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEee------cCCCCceeeEEEEeCEEEEeecCCC
Q 016088 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN------LLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~------~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
++...+...+.+.++++ +.+++|+++..++++..+.+.... +.. ... ..++|+.||+|||..+
T Consensus 105 ~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~-~~~--~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLH-VDP--LTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCC-CCc--EEEEcCEEEEEeCCCc
Confidence 88888888888888776 999999999875522222233221 100 011 6899999999999754
No 100
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.27 E-value=3.8e-11 Score=108.47 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=84.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCC-----CCceee-------ccc-cccccCC----CCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYS-----YDRLRL-------HLA-KQFCQLP----HLPF 70 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~-----~~~l~~-------~~~-~~~~~~~----~~~~ 70 (395)
|||+|||||++|+++|..|+++|.+|+|+|+.+..+..+.... ...+.. ... ...+... ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999876544222110 000000 000 0000000 0011
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 71 PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
+.......++.++.+.+.+.+.+.++++ +++++|+++..++ +.+.+...++ . .++++|+||+|+|..+
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~-~------~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGG-E------GTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCc-c------EEEEeCEEEECCCcch
Confidence 1111123577888899988888888776 9999999998766 4444544332 1 6899999999999754
No 101
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.25 E-value=1e-10 Score=102.04 Aligned_cols=140 Identities=23% Similarity=0.265 Sum_probs=86.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC-cccccCC-CCceeecccc-ccccCCCCCCCCCCC--CCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLAK-QFCQLPHLPFPSSYP--MFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g-g~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 81 (395)
.+||+|||||++|+++|..|+++|.+|+|+|+...+| +.|.... ++.+....+. .+......++..... ....+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 6899999999999999999999999999999998876 4665331 2222111110 111111111111111 123567
Q ss_pred HHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCC-CcEEEEEeecCC--CC-ceeeEEEEeCEEEEeecCC
Q 016088 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKASNLLS--PG-RVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~--~~-~~~~~~~~~d~vVlAtG~~ 148 (395)
++.+.+...+.+.++++ ++++.|+++..+++. ...-|.+..... .+ ...+..++++.||.|||+.
T Consensus 101 el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 88888888888888776 999999999876532 122233321100 00 0001789999999999953
No 102
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.25 E-value=1.3e-10 Score=109.18 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=84.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecC-C----CCCcccc-------------cCCCCceeeccccccccCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERE-N----CYASIWK-------------KYSYDRLRLHLAKQFCQLPHLP 69 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~-~----~~gg~~~-------------~~~~~~l~~~~~~~~~~~~~~~ 69 (395)
|||+||||||+|+++|..|++.|++|+|+|++ + +.++... ...+.+.....+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 2 2222100 0111112222111100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecC--CCCceeeEEEEeCEEEEeecC
Q 016088 70 FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL--SPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~d~vVlAtG~ 147 (395)
....+.....+..+.+++.+.+.+.++++ +. +.|+++..++ +.+.++..++. ..++. .+++++.||.|+|.
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~~~--~~i~a~~VI~AdG~ 153 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGGEK--GSVEADVVIGADGA 153 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCCcc--eEEEeCEEEECCCC
Confidence 11111123688889999998888888775 54 4688887655 56777766410 00121 67999999999997
Q ss_pred CCC
Q 016088 148 TSN 150 (395)
Q Consensus 148 ~~~ 150 (395)
.|.
T Consensus 154 ~S~ 156 (388)
T TIGR02023 154 NSP 156 (388)
T ss_pred CcH
Confidence 653
No 103
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.25 E-value=1.5e-10 Score=109.73 Aligned_cols=135 Identities=19% Similarity=0.156 Sum_probs=84.7
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc------ccccC----CCCce---------eec----
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKKY----SYDRL---------RLH---- 57 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg------~~~~~----~~~~l---------~~~---- 57 (395)
|++ ..|||+||||||+|+++|..|+++|++|+|+|+.+..+. ..... .++.+ ...
T Consensus 1 m~~--~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 1 MSE--DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLA 78 (428)
T ss_pred CCc--ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEE
Confidence 553 369999999999999999999999999999999875442 11100 00100 000
Q ss_pred --ccccc--ccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 58 --LAKQF--CQLPHLP--FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 58 --~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
..... ..+.... .+........+.++.+++.+.+++.++++ +.+++|+++..++ +.+.+...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g------ 148 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG------ 148 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC------
Confidence 00000 0000000 00011122467788888888888888776 8999999988654 4443333332
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016088 132 IEEYYSGRFLVVASGETS 149 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~ 149 (395)
..++|+.||+|+|..+
T Consensus 149 --~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 149 --DVIEAKTVILADGVNS 164 (428)
T ss_pred --cEEECCEEEEEeCCCH
Confidence 6789999999999643
No 104
>PRK08244 hypothetical protein; Provisional
Probab=99.20 E-value=3.4e-10 Score=109.73 Aligned_cols=134 Identities=21% Similarity=0.231 Sum_probs=84.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc------ccc--------C----------CCCceeecccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKK--------Y----------SYDRLRLHLAKQF 62 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~------~~~--------~----------~~~~l~~~~~~~~ 62 (395)
++||+||||||+|+++|..|+++|++|+|||+.+..... +.. . .............
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 379999999999999999999999999999987643210 000 0 0111111000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEE
Q 016088 63 CQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (395)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vV 142 (395)
..+........+....++..+.+.+.+.+++.++++ +++++++++..++ +.+.++..+.. ++ .++++|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~--g~---~~i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPD--GL---RTLTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCC--cc---EEEEeCEEE
Confidence 011111111111123566778888888888778766 9999999998765 45556654321 11 579999999
Q ss_pred EeecCCC
Q 016088 143 VASGETS 149 (395)
Q Consensus 143 lAtG~~~ 149 (395)
.|+|..|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999766
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.20 E-value=3.5e-10 Score=108.80 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=85.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC-------ccccc--------CCCCcee-----ec---cccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----LH---LAKQFC 63 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g-------g~~~~--------~~~~~l~-----~~---~~~~~~ 63 (395)
++||+||||||+|+++|+.|+++|++|+|+|+.+... +.+.. ..++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 5899999999999999999999999999999876421 11110 0011110 00 000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEE
Q 016088 64 QLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
.+...+....+.....+..+.+.+.+.+++.++++ +++++|+++..++ +.+.+++.++ .++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g--------~~i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG--------RTLRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC--------CEEEeCEEEE
Confidence 11111111111223456777888888888877666 9999999998865 5566766443 6789999999
Q ss_pred eecCCCC
Q 016088 144 ASGETSN 150 (395)
Q Consensus 144 AtG~~~~ 150 (395)
|+|..|.
T Consensus 151 ADG~~S~ 157 (488)
T PRK06834 151 CDGGRSL 157 (488)
T ss_pred ecCCCCC
Confidence 9997663
No 106
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.20 E-value=2.7e-10 Score=107.29 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=86.7
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC----c--------------------cccc------CC
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKK------YS 50 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g----g--------------------~~~~------~~ 50 (395)
|++. ..+||+|||||++|+++|..|+++|++|+|||+.+... + .|.. ..
T Consensus 1 ~~~~-~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSRR-SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCCC-CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 5543 36899999999999999999999999999999876321 1 0100 00
Q ss_pred CCceeecccc--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCC
Q 016088 51 YDRLRLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLS 127 (395)
Q Consensus 51 ~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~ 127 (395)
+..+...... ....+..... ........++..+.+.+.+.+++.++++ +++++|+++..++ +.+.+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g-- 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG-- 153 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence 1111110000 0001110000 0001112456778888888888877766 9999999998765 5667776554
Q ss_pred CCceeeEEEEeCEEEEeecCCC
Q 016088 128 PGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 128 ~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
.++++|.||.|+|..+
T Consensus 154 ------~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 ------RRLEAALAIAADGAAS 169 (392)
T ss_pred ------CEEEeCEEEEecCCCc
Confidence 6789999999999766
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.7e-10 Score=94.14 Aligned_cols=136 Identities=22% Similarity=0.262 Sum_probs=88.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc-ccccC-CCCceeeccccccc-cCCCCCCCCCCCC--CCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQFC-QLPHLPFPSSYPM--FVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg-~~~~~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~ 81 (395)
.-||+||||||+||+||++|++.|.+|+|||++-.+|| .|... .++.+..+.+...+ .--..++...-.. -....
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46999999999999999999999999999999877764 88754 45666666554322 1111222111111 12445
Q ss_pred HHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCc------EEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNM------WNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
++...+-..+-+.+.++ +..+.|+++...++.+. |+.....+. ..-+..+++++||-|||+
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~l---hvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGL---HVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhccc---ccCcceeeEEEEEeCCCC
Confidence 66666666666667555 88999999977653221 332222210 001178999999999996
No 108
>PRK06184 hypothetical protein; Provisional
Probab=99.19 E-value=4.7e-10 Score=108.90 Aligned_cols=134 Identities=22% Similarity=0.307 Sum_probs=84.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc------cccc------------------CCCCceeeccc-cc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA-KQ 61 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg------~~~~------------------~~~~~l~~~~~-~~ 61 (395)
.+||+||||||+|+++|..|+++|++|+|||+.+.... .+.. ..+........ ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 58999999999999999999999999999999864421 1100 01111111100 00
Q ss_pred ccc--CCC-C----CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeE
Q 016088 62 FCQ--LPH-L----PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (395)
Q Consensus 62 ~~~--~~~-~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (395)
... +.. . ..+.......++..+.+.+.+.+.+.++++ +++++|++++.++ +.++++..... +. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~--~~---~ 153 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPA--GE---E 153 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCC--Ce---E
Confidence 000 000 0 000011123456677778888787777665 9999999998765 45556653321 11 7
Q ss_pred EEEeCEEEEeecCCC
Q 016088 135 YYSGRFLVVASGETS 149 (395)
Q Consensus 135 ~~~~d~vVlAtG~~~ 149 (395)
++++|+||.|+|..|
T Consensus 154 ~i~a~~vVgADG~~S 168 (502)
T PRK06184 154 TVRARYLVGADGGRS 168 (502)
T ss_pred EEEeCEEEECCCCch
Confidence 899999999999876
No 109
>PRK06847 hypothetical protein; Provisional
Probab=99.19 E-value=6.2e-10 Score=104.22 Aligned_cols=134 Identities=19% Similarity=0.138 Sum_probs=87.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc----ccc----------C----------CCCceeecccc--
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI----WKK----------Y----------SYDRLRLHLAK-- 60 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~----~~~----------~----------~~~~l~~~~~~-- 60 (395)
.+||+|||||++|+++|..|++.|++|+|+|+.+..... ... . ....+....+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 579999999999999999999999999999987643210 000 0 01111111100
Q ss_pred ccccCCCCCC-CC--CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEE
Q 016088 61 QFCQLPHLPF-PS--SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (395)
Q Consensus 61 ~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (395)
....++.... .. .......+.++.+.+.+.+.+.++++ +++++|++++.+. +.+.+.+.++ .+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG--------TTGR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC--------CEEE
Confidence 0001110000 00 01123567888899988888878766 9999999998755 5677777654 6789
Q ss_pred eCEEEEeecCCCCCC
Q 016088 138 GRFLVVASGETSNPF 152 (395)
Q Consensus 138 ~d~vVlAtG~~~~p~ 152 (395)
+|.||.|+|.++..+
T Consensus 152 ad~vI~AdG~~s~~r 166 (375)
T PRK06847 152 YDLVVGADGLYSKVR 166 (375)
T ss_pred cCEEEECcCCCcchh
Confidence 999999999766443
No 110
>PRK07190 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-10 Score=108.21 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=85.2
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--------------CCCC----------ceee
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD----------RLRL 56 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--------------~~~~----------~l~~ 56 (395)
|++. .+||+||||||+|+++|+.|+++|++|+|||+.+.....-+. ..++ ....
T Consensus 1 m~~~--~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 1 MSTQ--VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCCc--cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 5543 589999999999999999999999999999998754211000 0000 0000
Q ss_pred cccccccc-----CCCCC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCc
Q 016088 57 HLAKQFCQ-----LPHLP-FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (395)
Q Consensus 57 ~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (395)
........ +.... .........++..+.+.+.+.+.+.++++ +++++|+++..++ +.+.+.+.++
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g----- 149 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG----- 149 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence 00000000 00000 00000112455667777777788888776 9999999998866 4555655443
Q ss_pred eeeEEEEeCEEEEeecCCC
Q 016088 131 VIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 131 ~~~~~~~~d~vVlAtG~~~ 149 (395)
.+++|++||.|+|..|
T Consensus 150 ---~~v~a~~vVgADG~~S 165 (487)
T PRK07190 150 ---ERIQSRYVIGADGSRS 165 (487)
T ss_pred ---cEEEeCEEEECCCCCH
Confidence 6899999999999765
No 111
>PLN02463 lycopene beta cyclase
Probab=99.18 E-value=2.2e-10 Score=108.29 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC-----cccccCCCCce------eeccccccccCCC-C-CCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA-----SIWKKYSYDRL------RLHLAKQFCQLPH-L-PFPS 72 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g-----g~~~~~~~~~l------~~~~~~~~~~~~~-~-~~~~ 72 (395)
..+||+|||||++|+++|..|++.|++|+|+|+.+... +.|... .+.+ ....+.....+.. . ....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 36899999999999999999999999999999876321 222210 0000 0000000000000 0 0000
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 73 SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
..-....+.++.+.+.+.+...++.. ...+|++++..+ +.+.|++.++ .+++|+.||.|+|..+
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG--------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG--------VKIQASLVLDATGFSR 169 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence 00113477888888888888778763 467899998765 5677887764 6899999999999644
No 112
>PRK10015 oxidoreductase; Provisional
Probab=99.18 E-value=2.8e-10 Score=107.76 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=83.6
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc------ccccC----CCCceee------cccccccc
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKKY----SYDRLRL------HLAKQFCQ 64 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg------~~~~~----~~~~l~~------~~~~~~~~ 64 (395)
|++ .+|||+||||||+|+++|..|++.|++|+|||+.+..|. ..... ..+.+.. ......+.
T Consensus 1 m~~--~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 78 (429)
T PRK10015 1 MSD--DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKIS 78 (429)
T ss_pred CCc--cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEE
Confidence 553 369999999999999999999999999999998875432 11111 0111100 00000000
Q ss_pred C-C-----CCCCCC-------CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 65 L-P-----HLPFPS-------SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 65 ~-~-----~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
+ . ...+.. .......+..+.+++.+.+++.++++ +.+++|+++..++ +.+.....++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~------ 148 (429)
T PRK10015 79 FLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD------ 148 (429)
T ss_pred EEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC------
Confidence 0 0 000000 00122456778888888888888776 8899999987654 4443222221
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016088 132 IEEYYSGRFLVVASGETS 149 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~ 149 (395)
..++|+.||+|+|..+
T Consensus 149 --~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 149 --DILEANVVILADGVNS 164 (429)
T ss_pred --eEEECCEEEEccCcch
Confidence 6899999999999643
No 113
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.17 E-value=4.8e-10 Score=105.47 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=84.0
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCC----ceee-----c-ccc-ccccCCCCCCCCCCCC-
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYD----RLRL-----H-LAK-QFCQLPHLPFPSSYPM- 76 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~----~l~~-----~-~~~-~~~~~~~~~~~~~~~~- 76 (395)
||+|||||++|+++|..|++.|++|+|+|+++..++......+. .+.+ + ... ..+..+........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999988776532211111 0100 0 000 0001111110001111
Q ss_pred CCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 77 FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
...+..+.+.+.+.+.+.++. ...++|+++..+. .+.+.|++.++ ..++|+.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~---~~~~~v~~i~~~~-~~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVL---WLERKAIHAEADG-VALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcE---EEccEEEEEEecC-CceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 256788889998888887765 4567888887652 35677777654 6899999999999765
No 114
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.17 E-value=1.9e-10 Score=106.74 Aligned_cols=134 Identities=23% Similarity=0.245 Sum_probs=82.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc----------------------CC--CC--ceeeccc--
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK----------------------YS--YD--RLRLHLA-- 59 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~----------------------~~--~~--~l~~~~~-- 59 (395)
+||+|||||++|+++|..|+++|++|+|||+.+........ .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999998754311000 00 00 0011110
Q ss_pred ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCc
Q 016088 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (395)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (395)
.....+. ............+.++.+.+.+.++..++.+ +++++++++..+. +...+...+... ++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~-g~ 155 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGED-GE 155 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCT-CE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccC-Cc
Confidence 0000000 0000111123467889999999988888665 9999999998876 444455544422 23
Q ss_pred eeeEEEEeCEEEEeecCCC
Q 016088 131 VIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 131 ~~~~~~~~d~vVlAtG~~~ 149 (395)
. .++++|.||.|+|..|
T Consensus 156 ~--~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 156 E--ETIEADLVVGADGAHS 172 (356)
T ss_dssp E--EEEEESEEEE-SGTT-
T ss_pred e--eEEEEeeeecccCccc
Confidence 2 5899999999999766
No 115
>PRK08013 oxidoreductase; Provisional
Probab=99.16 E-value=3.9e-10 Score=106.29 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=84.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC---c----------------------cccc------CCCCcee
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKK------YSYDRLR 55 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g---g----------------------~~~~------~~~~~l~ 55 (395)
++||+|||||++|+++|..|+++|++|+|+|+.+... | .|.. ..+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 5899999999999999999999999999999876421 1 1110 0111111
Q ss_pred eccccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 56 LHLAKQ--FCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 56 ~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
...+.. ...+....... ......++..+.+.+.+.+... ++++ +++++|++++.++ +.+.++..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 111100 00010000000 0012356778888888777665 5555 9999999998765 4556666554
Q ss_pred eeEEEEeCEEEEeecCCCCC
Q 016088 132 IEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~~p 151 (395)
.++++|+||.|+|..|.-
T Consensus 153 --~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 153 --SMLTARLVVGADGANSWL 170 (400)
T ss_pred --CEEEeeEEEEeCCCCcHH
Confidence 679999999999976633
No 116
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.15 E-value=9.8e-10 Score=107.53 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--------------C----------CCCceeeccc--
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------Y----------SYDRLRLHLA-- 59 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--------------~----------~~~~l~~~~~-- 59 (395)
..+||+|||||++|+++|..|+++|++|+|+|+.+......+. . ....+.....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g 88 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG 88 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence 4689999999999999999999999999999998754321110 0 0111111100
Q ss_pred cccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 60 KQFCQLPH-LPFPSSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 60 ~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
.....+.. ......++ ....+.++.+.+.+.+.++ ++++ +++++|++++.++ +.+.++..+.. |+. .+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v--~~g~~v~~i~~~~--~~v~v~~~~~~--G~~--~~ 160 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRV--RFGHEVTALTQDD--DGVTVTLTDAD--GQR--ET 160 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEE--EcCCEEEEEEEcC--CeEEEEEEcCC--CCE--EE
Confidence 01111110 00001111 2345667777887777664 6555 9999999998866 55667665321 221 68
Q ss_pred EEeCEEEEeecCCCCC
Q 016088 136 YSGRFLVVASGETSNP 151 (395)
Q Consensus 136 ~~~d~vVlAtG~~~~p 151 (395)
+++|+||.|+|..|..
T Consensus 161 i~ad~vVgADG~~S~v 176 (538)
T PRK06183 161 VRARYVVGCDGANSFV 176 (538)
T ss_pred EEEEEEEecCCCchhH
Confidence 9999999999976643
No 117
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.14 E-value=5.2e-10 Score=105.22 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=84.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc------------------cccc-----CCCCceeecccc-cc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------------------IWKK-----YSYDRLRLHLAK-QF 62 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg------------------~~~~-----~~~~~l~~~~~~-~~ 62 (395)
.+||+|||||++|+++|..|+++|++|+|||+.+.... .|.. ..+..+...... ..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 68999999999999999999999999999999764321 1110 011111111110 00
Q ss_pred c-----cCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEE
Q 016088 63 C-----QLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (395)
Q Consensus 63 ~-----~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (395)
. .+...... ..+....++..+.+.+.+.+.+++... +++++|+++..++ +.+.|++.++ ..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 154 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG--------TTL 154 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC--------CEE
Confidence 0 00000000 011112456778888887777765433 7899999998755 6677777654 679
Q ss_pred EeCEEEEeecCCCC
Q 016088 137 SGRFLVVASGETSN 150 (395)
Q Consensus 137 ~~d~vVlAtG~~~~ 150 (395)
++|.||.|+|..|.
T Consensus 155 ~a~~vI~AdG~~S~ 168 (388)
T PRK07494 155 SARLVVGADGRNSP 168 (388)
T ss_pred EEeEEEEecCCCch
Confidence 99999999997653
No 118
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.13 E-value=6.2e-10 Score=104.40 Aligned_cols=132 Identities=23% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC-CCCcccc-----c--------------------CCCCceeecccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASIWK-----K--------------------YSYDRLRLHLAK 60 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~-~~gg~~~-----~--------------------~~~~~l~~~~~~ 60 (395)
.+||+|||||++|+++|..|++.|++|+|||+.+ .+-..-+ . ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 1110000 0 011111111111
Q ss_pred -ccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEe-ecCCCCceeeEEE
Q 016088 61 -QFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYY 136 (395)
Q Consensus 61 -~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~ 136 (395)
....+...... .......++.++.+.+.+.+.+.+ ++. +++++|+.++.++ +...+++. ++ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~--~~~~~v~~~~~~~--~~v~v~l~~dG--------~~~ 149 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTL--RFGAEVEAVEQDG--DGVTVTLSFDG--------ETL 149 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEE--EcCceEEEEEEcC--CceEEEEcCCC--------cEE
Confidence 11111111111 112234678899999998887765 565 9999999999876 55557776 44 789
Q ss_pred EeCEEEEeecCCCC
Q 016088 137 SGRFLVVASGETSN 150 (395)
Q Consensus 137 ~~d~vVlAtG~~~~ 150 (395)
+||.||.|.|..|.
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999997663
No 119
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.13 E-value=7.4e-10 Score=105.15 Aligned_cols=137 Identities=21% Similarity=0.281 Sum_probs=82.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC----c-c----------------ccc-----CCCCceeeccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----S-I----------------WKK-----YSYDRLRLHLA 59 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g----g-~----------------~~~-----~~~~~l~~~~~ 59 (395)
..+||+|||||++|+++|..|+++|++|+|+|+.+... | . |.. .....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 36899999999999999999999999999999987542 1 0 100 00011111000
Q ss_pred c--ccccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 60 K--QFCQLPHLPFPSS-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 60 ~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
. ....+........ .........+.+.+.+.+... ++++ +++++|+++..++ +.+.|++.++.+ + .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~v~~~~--~~~~v~~~~~~~--~---~~ 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITW--LCPAEVVSVEYQQ--DAATVTLEIEGK--Q---QT 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeeEEEEccCCc--c---eE
Confidence 0 0001110000000 011122345667776666554 5555 8899999998765 556777664311 1 57
Q ss_pred EEeCEEEEeecCCCCC
Q 016088 136 YSGRFLVVASGETSNP 151 (395)
Q Consensus 136 ~~~d~vVlAtG~~~~p 151 (395)
++||.||.|+|..|.-
T Consensus 168 i~adlvIgADG~~S~v 183 (415)
T PRK07364 168 LQSKLVVAADGARSPI 183 (415)
T ss_pred EeeeEEEEeCCCCchh
Confidence 9999999999976643
No 120
>PRK06126 hypothetical protein; Provisional
Probab=99.13 E-value=2e-09 Score=105.74 Aligned_cols=142 Identities=22% Similarity=0.261 Sum_probs=86.0
Q ss_pred CCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--------------CCCC--------------c
Q 016088 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYD--------------R 53 (395)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--------------~~~~--------------~ 53 (395)
++....+||+|||||++|+++|..|+++|++|+|+|+.+.....-+. ...+ .
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence 34445789999999999999999999999999999988643211000 0000 0
Q ss_pred eeec-ccc-ccccC--CCCC----C--------C-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCC
Q 016088 54 LRLH-LAK-QFCQL--PHLP----F--------P-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEAT 115 (395)
Q Consensus 54 l~~~-~~~-~~~~~--~~~~----~--------~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~ 115 (395)
.... ... ....+ .... . . .......++..+.+.+.+.+.+. ++++ +++++|++++.++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~-- 157 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA-- 157 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--
Confidence 0000 000 00000 0000 0 0 00112345667777888777654 5555 9999999998765
Q ss_pred CcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 116 NMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 116 ~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+.+++++.+..+ ++. .++++|+||.|+|..|.
T Consensus 158 ~~v~v~~~~~~~-g~~--~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 158 DGVTATVEDLDG-GES--LTIRADYLVGCDGARSA 189 (545)
T ss_pred CeEEEEEEECCC-CcE--EEEEEEEEEecCCcchH
Confidence 445566544221 222 58999999999998763
No 121
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.13 E-value=4.1e-09 Score=101.31 Aligned_cols=131 Identities=13% Similarity=0.157 Sum_probs=79.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc--ccc---CCCCc-eeecccc--c---------cccCCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKK---YSYDR-LRLHLAK--Q---------FCQLPHLPF 70 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~--~~~---~~~~~-l~~~~~~--~---------~~~~~~~~~ 70 (395)
|||+|||||++|+.+|..+++.|.+|+++|+....+|. +.. ....+ +.-.+.. . ...+.....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999987433221 110 00000 0000000 0 000111100
Q ss_pred ---C-CCCC-CCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEe
Q 016088 71 ---P-SSYP-MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVA 144 (395)
Q Consensus 71 ---~-~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlA 144 (395)
+ .+.+ ....+..+...+++.+++. ++. .++..|+++..++++..+.|.+.++ ..+.|+.||+|
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILA 149 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIIT 149 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCC--------CEEECCEEEEc
Confidence 0 0111 1345667778888878777 444 5667888886553334556777654 68999999999
Q ss_pred ecCCC
Q 016088 145 SGETS 149 (395)
Q Consensus 145 tG~~~ 149 (395)
||.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99654
No 122
>PRK06185 hypothetical protein; Provisional
Probab=99.13 E-value=9.7e-10 Score=104.08 Aligned_cols=140 Identities=21% Similarity=0.343 Sum_probs=84.6
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC-----Cccccc---------CC-----------CCcee
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASIWKK---------YS-----------YDRLR 55 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~-----gg~~~~---------~~-----------~~~l~ 55 (395)
|.+. ..+||+|||||++|+++|..|+++|++|+|+|+.+.. +..+.. .. ...+.
T Consensus 1 ~~~~-~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~ 79 (407)
T PRK06185 1 MAEV-ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLR 79 (407)
T ss_pred CCcc-ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEE
Confidence 4433 3689999999999999999999999999999987642 111110 00 11111
Q ss_pred eccccc---cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 56 LHLAKQ---FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 56 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
...... ...+........+..+.++..+.+.+.+.+.+. ++++ +++++|+++..++ +....|.+.... ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i--~~~~~v~~~~~~~-~~v~~v~~~~~~--g~- 153 (407)
T PRK06185 80 FEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTL--RMGAEVTGLIEEG-GRVTGVRARTPD--GP- 153 (407)
T ss_pred EEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEE--EeCCEEEEEEEeC-CEEEEEEEEcCC--Cc-
Confidence 111111 001111111111223456778888887777654 5555 8999999998765 222224443221 12
Q ss_pred eeEEEEeCEEEEeecCCC
Q 016088 132 IEEYYSGRFLVVASGETS 149 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~ 149 (395)
..+++|.||.|+|.+|
T Consensus 154 --~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 154 --GEIRADLVVGADGRHS 169 (407)
T ss_pred --EEEEeCEEEECCCCch
Confidence 5799999999999766
No 123
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.12 E-value=6.4e-10 Score=104.53 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=86.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc--cCC--------CCcee----eccccccccCCCCC---
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK--KYS--------YDRLR----LHLAKQFCQLPHLP--- 69 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~--~~~--------~~~l~----~~~~~~~~~~~~~~--- 69 (395)
.|||+||||||||++||..|++.|++|+|+|+++..|.... ... .+... .......+.++...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 58999999999999999999999999999999887664111 000 00010 01111111111000
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 70 -FPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 70 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
.+........+..+.+++...+++.+.++ +..+.+..+..++ +...+....+. .++++++||.|+|.
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~-------~e~~a~~vI~AdG~ 150 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD-------DEVRAKVVIDADGV 150 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC-------EEEEcCEEEECCCc
Confidence 00011123457888889999999999888 9999999999876 34334433321 68999999999995
No 124
>PRK07045 putative monooxygenase; Reviewed
Probab=99.12 E-value=1.4e-09 Score=102.25 Aligned_cols=136 Identities=24% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC---c---ccccC-------------------CCCceeecccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---S---IWKKY-------------------SYDRLRLHLAK 60 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g---g---~~~~~-------------------~~~~l~~~~~~ 60 (395)
..+||+||||||+|+++|..|++.|++|+|+|+.+... + .+... ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 35899999999999999999999999999999887541 1 11100 00111110000
Q ss_pred c-cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHh-cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEE
Q 016088 61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (395)
Q Consensus 61 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (395)
. ...+..... ...+....++.++.+.+.+.+.. .++++ +++++|+++..+++...+.|+..++ .+++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRL--RFETSIERIERDADGTVTSVTLSDG--------ERVA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeE--EeCCEEEEEEECCCCcEEEEEeCCC--------CEEE
Confidence 0 000110000 00111124567787877776654 34554 9999999998876333345666554 6789
Q ss_pred eCEEEEeecCCCCC
Q 016088 138 GRFLVVASGETSNP 151 (395)
Q Consensus 138 ~d~vVlAtG~~~~p 151 (395)
+|.||.|+|..|..
T Consensus 154 ~~~vIgADG~~S~v 167 (388)
T PRK07045 154 PTVLVGADGARSMI 167 (388)
T ss_pred CCEEEECCCCChHH
Confidence 99999999976633
No 125
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.12 E-value=7.6e-10 Score=104.69 Aligned_cols=131 Identities=22% Similarity=0.303 Sum_probs=84.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCc--------c-------------ccc-----CCCCceeeccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYAS--------I-------------WKK-----YSYDRLRLHLA 59 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg--------~-------------~~~-----~~~~~l~~~~~ 59 (395)
+||+|||||++|+++|..|+++| ++|+|+|+.+.... . |.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 99999999764210 0 000 00111111100
Q ss_pred c-------ccccCCC-CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 60 K-------QFCQLPH-LPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 60 ~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
. ....+.. ......+....++..+.+.+.+.+.+.++++ +++++|++++.++ +.+.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 0 0001100 0000111124577888999988888878766 9999999998765 5677776554
Q ss_pred eeEEEEeCEEEEeecCCCC
Q 016088 132 IEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~~ 150 (395)
..+++|.||.|+|..|.
T Consensus 152 --~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 152 --SVLEARLLVAADGARSK 168 (403)
T ss_pred --CEEEeCEEEEcCCCChH
Confidence 67899999999997553
No 126
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.12 E-value=7e-10 Score=104.43 Aligned_cols=133 Identities=19% Similarity=0.292 Sum_probs=82.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC----C---------------------cccccC------CCCce
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----A---------------------SIWKKY------SYDRL 54 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~----g---------------------g~~~~~------~~~~l 54 (395)
..+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4689999999999999999999999999999987521 1 011100 01111
Q ss_pred eec-cccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 55 RLH-LAKQFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
... .......+...... .......++..+.+.+.+.+... ++++ +.+++|+++..++ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 100 00000000000000 00111245677777777766665 6555 8899999998655 5677777654
Q ss_pred eeEEEEeCEEEEeecCCCC
Q 016088 132 IEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~~ 150 (395)
.++++|.||.|+|..|.
T Consensus 154 --~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 --EEIQAKLVIGADGANSQ 170 (391)
T ss_pred --CEEEeCEEEEeCCCCch
Confidence 67899999999997663
No 127
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.11 E-value=5.5e-10 Score=105.65 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=82.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC-------------Cccccc---------CCCCc-----------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------------ASIWKK---------YSYDR----------- 53 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~-------------gg~~~~---------~~~~~----------- 53 (395)
.+||+|||||++|+++|..|+++|++|+|||+.+.. +..... ..++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999987621 000000 00111
Q ss_pred eeeccccc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCc
Q 016088 54 LRLHLAKQ--FCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (395)
Q Consensus 54 l~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (395)
+....... ...+...... .......++..+.+.+.+.+.+.++++ +++++|++++.++ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGL--LANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 11100000 0001000000 001112345677777777676667655 8999999998765 5677777654
Q ss_pred eeeEEEEeCEEEEeecCCCCC
Q 016088 131 VIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 131 ~~~~~~~~d~vVlAtG~~~~p 151 (395)
.++++|.||.|+|.+|..
T Consensus 153 ---~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 153 ---RQLRAPLVVAADGANSAV 170 (405)
T ss_pred ---CEEEeCEEEEecCCCchh
Confidence 678999999999987643
No 128
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.11 E-value=8.4e-10 Score=90.82 Aligned_cols=138 Identities=18% Similarity=0.205 Sum_probs=78.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc-cccc-CCCCceeeccccccc-cCCCCCCCCCCC--CCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-IWKK-YSYDRLRLHLAKQFC-QLPHLPFPSSYP--MFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg-~~~~-~~~~~l~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 81 (395)
++||+||||||+|++||..|++.|++|++||++..+|| .|.. ..++.+..+.+...+ .--..++...-. ...+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 58999999999999999999999999999999987775 7865 356666666543322 111111111111 123566
Q ss_pred HHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcE-EEEEeecC--CC-CceeeEEEEeCEEEEeecC
Q 016088 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKASNLL--SP-GRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~--~~-~~~~~~~~~~d~vVlAtG~ 147 (395)
++...+-..+-+.+.++ +..+.|+++...++ ++. -|.+.-.. -. -..-+..++++.||-|||+
T Consensus 97 ~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 77777766666677665 88899999977653 221 12221100 00 0001178999999999995
No 129
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.10 E-value=2.4e-09 Score=105.14 Aligned_cols=139 Identities=21% Similarity=0.319 Sum_probs=85.5
Q ss_pred CcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--------------CCCCce----------ee-c
Q 016088 3 EQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSYDRL----------RL-H 57 (395)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--------------~~~~~l----------~~-~ 57 (395)
..+..+||+|||||++|+++|..|+++|++|+|||+.+......+. ...+.+ .. .
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 98 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL 98 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence 3345689999999999999999999999999999998754321100 000000 00 0
Q ss_pred cccccccCCCCCCC-CCCC--CCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceee
Q 016088 58 LAKQFCQLPHLPFP-SSYP--MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (395)
Q Consensus 58 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (395)
.......+...+.. ...+ ...++..+.+.+.+.+.+. ++.+ +++++|+++..++ +.+.++..+..+ +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~v~v~~~~~~g--~--- 169 (547)
T PRK08132 99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDL--RWKNKVTGLEQHD--DGVTLTVETPDG--P--- 169 (547)
T ss_pred CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEE--EeCCEEEEEEEcC--CEEEEEEECCCC--c---
Confidence 00111111111100 0111 1245667778888777665 4454 9999999998765 455565543221 1
Q ss_pred EEEEeCEEEEeecCCCC
Q 016088 134 EYYSGRFLVVASGETSN 150 (395)
Q Consensus 134 ~~~~~d~vVlAtG~~~~ 150 (395)
.++++|+||.|+|..|.
T Consensus 170 ~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 170 YTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEeCEEEECCCCCcH
Confidence 57999999999997653
No 130
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.10 E-value=2.1e-09 Score=102.12 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=82.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC-----Cccccc-----C--------CCCceeeccccc-cccCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-----ASIWKK-----Y--------SYDRLRLHLAKQ-FCQLP 66 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~-----gg~~~~-----~--------~~~~l~~~~~~~-~~~~~ 66 (395)
..+||+||||||+|+++|..|+++|++|+|+|+.+.. ++.... . ....+....+.. ...+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 3689999999999999999999999999999987522 211000 0 011111111111 00111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeC-CCCcEEEEEeecC---CCCceeeEEEEeCEEE
Q 016088 67 HLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE-ATNMWNVKASNLL---SPGRVIEEYYSGRFLV 142 (395)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~---~~~~~~~~~~~~d~vV 142 (395)
.......+.....+..+.+.+.+.+.+.+.++ +. ..+++++... ..+.+.|++.+.. ..++. .+++||.||
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~-~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~v~a~~VI 192 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--IN-GLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP--KTLEVDAVI 192 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Ee-ceEEEEEeccCCCCcEEEEEEeccccccCCCc--cEEEeCEEE
Confidence 00000011113688899999998888888775 54 4577776432 1245666654320 00111 689999999
Q ss_pred EeecCCC
Q 016088 143 VASGETS 149 (395)
Q Consensus 143 lAtG~~~ 149 (395)
.|+|..|
T Consensus 193 gADG~~S 199 (450)
T PLN00093 193 GADGANS 199 (450)
T ss_pred EcCCcch
Confidence 9999655
No 131
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.08 E-value=2.7e-09 Score=100.23 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=81.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccC------------------CCCceeecccccc-ccCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY------------------SYDRLRLHLAKQF-CQLPHL 68 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~------------------~~~~l~~~~~~~~-~~~~~~ 68 (395)
+||+||||||+|+++|..|++.|++|+|+|+++..+..+... ....+....+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999876433211110 1111111111110 001100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeC-CCCcEEEEEeecCC---CCceeeEEEEeCEEEEe
Q 016088 69 PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE-ATNMWNVKASNLLS---PGRVIEEYYSGRFLVVA 144 (395)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~-~~~~~~v~~~~~~~---~~~~~~~~~~~d~vVlA 144 (395)
.....+.....+..+.+++.+.+.+.++++ +.. .++++.... ..+.+.|+...... .++. .+++|+.||.|
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~--~~i~a~~VIgA 155 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSGTR--CTLEVDAVIGA 155 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCCCc--cEEEeCEEEEC
Confidence 001111123678888899998888888875 555 476665322 23456665432110 0111 68999999999
Q ss_pred ecCCC
Q 016088 145 SGETS 149 (395)
Q Consensus 145 tG~~~ 149 (395)
+|..|
T Consensus 156 DG~~S 160 (398)
T TIGR02028 156 DGANS 160 (398)
T ss_pred CCcch
Confidence 99644
No 132
>PRK06753 hypothetical protein; Provisional
Probab=99.07 E-value=1.9e-09 Score=100.80 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=81.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc------------------------CCCCceeeccccccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLAKQFC 63 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~------------------------~~~~~l~~~~~~~~~ 63 (395)
.+|+|||||++|+++|..|+++|++|+|+|+.+........ .....+....+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 37999999999999999999999999999998754311000 00111111111000
Q ss_pred cCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEE
Q 016088 64 QLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (395)
Q Consensus 64 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vV 142 (395)
.+...+... ......++..+.+.+.+.+.. . .++++++|++++.++ +.+.|++.++ ..+++|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET--DKVTIHFADG--------ESEAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC--CcEEEEECCC--------CEEecCEEE
Confidence 000001110 011235677777777765543 2 359999999998654 6677877664 678999999
Q ss_pred EeecCCCC
Q 016088 143 VASGETSN 150 (395)
Q Consensus 143 lAtG~~~~ 150 (395)
.|+|..|.
T Consensus 146 gadG~~S~ 153 (373)
T PRK06753 146 GADGIHSK 153 (373)
T ss_pred ECCCcchH
Confidence 99997663
No 133
>PRK09126 hypothetical protein; Provisional
Probab=99.06 E-value=2.5e-09 Score=100.79 Aligned_cols=131 Identities=20% Similarity=0.213 Sum_probs=79.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC--------Cc---cccc--------CCCCcee-----------e
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYDRLR-----------L 56 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~--------gg---~~~~--------~~~~~l~-----------~ 56 (395)
++||+|||||++|+++|..|+++|++|+|+|+.+.. |. .+.. ..++.+. .
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 489999999999999999999999999999998642 11 0100 0111110 0
Q ss_pred ccccc--cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-hcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCcee
Q 016088 57 HLAKQ--FCQLPHLPF-PSSYPMFVSRAQFIEYLDHYVS-HFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (395)
Q Consensus 57 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (395)
..... ...+..... ........++..+.+.+.+.+. ..++++ +++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIEL--LTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEE--EcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 00000 000100000 0001112345556665555443 346665 9999999998755 5567776554
Q ss_pred eEEEEeCEEEEeecCCC
Q 016088 133 EEYYSGRFLVVASGETS 149 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~ 149 (395)
.++++|+||.|+|..|
T Consensus 152 -~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 152 -RRLTARLLVAADSRFS 167 (392)
T ss_pred -CEEEeCEEEEeCCCCc
Confidence 6899999999999655
No 134
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.06 E-value=9.8e-10 Score=92.61 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=79.0
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccc----------------------------c
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA----------------------------K 60 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~----------------------------~ 60 (395)
+|+|||+|++|++||..|...|++|+|+||+..+||.....+.++-..+.. .
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 699999999999999999999999999999998888543221111111111 1
Q ss_pred ccccCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 61 QFCQLPHL---PFPSS--YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 61 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
.++.+... +..+. +-..+.-..+.+++- .++.+ .++++|+.+.+.+ +.|+++++++. ..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA-----tdL~V--~~~~rVt~v~~~~--~~W~l~~~~g~-------~~ 146 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA-----TDLTV--VLETRVTEVARTD--NDWTLHTDDGT-------RH 146 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh-----ccchh--hhhhhhhhheecC--CeeEEEecCCC-------cc
Confidence 11222111 10111 111122223333222 15555 9999999999875 89999997753 67
Q ss_pred EEeCEEEEeecC
Q 016088 136 YSGRFLVVASGE 147 (395)
Q Consensus 136 ~~~d~vVlAtG~ 147 (395)
..+|.||+|.=.
T Consensus 147 ~~~d~vvla~PA 158 (331)
T COG3380 147 TQFDDVVLAIPA 158 (331)
T ss_pred cccceEEEecCC
Confidence 889999999874
No 135
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.06 E-value=1.2e-09 Score=102.57 Aligned_cols=130 Identities=16% Similarity=0.194 Sum_probs=82.9
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc--------cccc-----------CCCCcee-----------ecc
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS--------IWKK-----------YSYDRLR-----------LHL 58 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg--------~~~~-----------~~~~~l~-----------~~~ 58 (395)
||+|||||++|+++|..|+++|++|+|+|+.+..+. ...- ...+.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999999999999999875321 0000 0111110 000
Q ss_pred ccc--cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeE
Q 016088 59 AKQ--FCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (395)
Q Consensus 59 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (395)
... ...+...... .......++.++.+.+.+.+.+.+ +++ +++++|+++..++ +.+.+++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~ 148 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG--------Q 148 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC--------C
Confidence 000 0001000000 001123456788888888777765 555 9999999998765 5667776654 6
Q ss_pred EEEeCEEEEeecCCCC
Q 016088 135 YYSGRFLVVASGETSN 150 (395)
Q Consensus 135 ~~~~d~vVlAtG~~~~ 150 (395)
.+++|.||.|+|..|.
T Consensus 149 ~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 149 QLRARLLVGADGANSK 164 (385)
T ss_pred EEEeeEEEEeCCCCCH
Confidence 7899999999997653
No 136
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=2.2e-09 Score=100.25 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=83.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC-------Cc----------------cccc-----CCCCceeeccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY-------AS----------------IWKK-----YSYDRLRLHLA 59 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~-------gg----------------~~~~-----~~~~~l~~~~~ 59 (395)
+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 68999999999999999999999999999976311 11 1110 01122211111
Q ss_pred c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEE
Q 016088 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (395)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (395)
. ....+... ....+.....+.++.+.+.+.+...+ +.. +++++++++..++ +.++|++.+ .++
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~---------~~~ 147 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITL--IDNNQYQEVISHN--DYSIIKFDD---------KQI 147 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEE--ECCCeEEEEEEcC--CeEEEEEcC---------CEE
Confidence 0 01111110 00011123567888888888777764 444 8899999998765 556677643 679
Q ss_pred EeCEEEEeecCCCCCC
Q 016088 137 SGRFLVVASGETSNPF 152 (395)
Q Consensus 137 ~~d~vVlAtG~~~~p~ 152 (395)
++|.||.|+|..|.-+
T Consensus 148 ~adlvIgADG~~S~vR 163 (374)
T PRK06617 148 KCNLLIICDGANSKVR 163 (374)
T ss_pred eeCEEEEeCCCCchhH
Confidence 9999999999766443
No 137
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.05 E-value=1.3e-09 Score=102.85 Aligned_cols=133 Identities=24% Similarity=0.242 Sum_probs=83.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc------ccc--------CCCC----------ceeecc---c
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKK--------YSYD----------RLRLHL---A 59 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~------~~~--------~~~~----------~l~~~~---~ 59 (395)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. ...+ .+.... .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999998755321 100 0001 111100 0
Q ss_pred cccccCCCCC-CCCCC--C-CCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeE
Q 016088 60 KQFCQLPHLP-FPSSY--P-MFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (395)
Q Consensus 60 ~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (395)
.....++... ....+ + ....+.++.+.+.+.+.+.+ +++ +++++|+++..++ +.+.+++.++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~--~~~~~v~~i~~~~--~~v~v~~~~g--------~ 151 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEF--RTSTHVVGIEQDG--DGVTVFDQQG--------N 151 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEE--EeCCEEEEEecCC--CceEEEEcCC--------C
Confidence 0000000000 00000 1 12467778888877776654 554 8999999998654 5566766554 6
Q ss_pred EEEeCEEEEeecCCCCC
Q 016088 135 YYSGRFLVVASGETSNP 151 (395)
Q Consensus 135 ~~~~d~vVlAtG~~~~p 151 (395)
++++|.||.|+|.+|..
T Consensus 152 ~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 152 RWTGDALIGCDGVKSVV 168 (396)
T ss_pred EEecCEEEECCCcChHH
Confidence 78999999999987644
No 138
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.04 E-value=2.3e-09 Score=100.89 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc---cccc----------------CCCCceee-c-cccccccC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS---IWKK----------------YSYDRLRL-H-LAKQFCQL 65 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg---~~~~----------------~~~~~l~~-~-~~~~~~~~ 65 (395)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|.. ...+.+.. . .+.....+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999998875421 1110 00000000 0 00000000
Q ss_pred -----CCCC---CCCCCC---CCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceee
Q 016088 66 -----PHLP---FPSSYP---MFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (395)
Q Consensus 66 -----~~~~---~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (395)
.... .....+ ....+..+.+.+.+.+.+.+ +.+ + +++|+++...+ +.+.|++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g-------- 151 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG-------- 151 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC--------
Confidence 0000 000011 11346778888887777765 554 6 88999987654 5677777654
Q ss_pred EEEEeCEEEEeecCCCC
Q 016088 134 EYYSGRFLVVASGETSN 150 (395)
Q Consensus 134 ~~~~~d~vVlAtG~~~~ 150 (395)
.++++|.||.|+|.+|.
T Consensus 152 ~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QVLRADLVVGADGAHSW 168 (388)
T ss_pred CEEEeeEEEEeCCCCch
Confidence 67999999999997664
No 139
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.04 E-value=2.8e-09 Score=99.28 Aligned_cols=126 Identities=26% Similarity=0.309 Sum_probs=81.9
Q ss_pred eEEEECCChHHHHHHHHH--hhcCCCeEEEecCCCC--Cc--ccc---cCC--CCcee-eccccccccCCCCCCC-CCCC
Q 016088 9 EVIIVGAGPSGLATAACL--SLQSIPYVILERENCY--AS--IWK---KYS--YDRLR-LHLAKQFCQLPHLPFP-SSYP 75 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l--~~~~~~v~vie~~~~~--gg--~~~---~~~--~~~l~-~~~~~~~~~~~~~~~~-~~~~ 75 (395)
||+|||||+||+++|..| .+.|.+|+|||+++.. .. +|. ... ++.+. ...+.....++..... ...+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7789999999987765 22 232 110 00000 0000000011111000 0011
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 76 -MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 76 -~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
....+..+.+++.+.+...+ .. +++++|++|+... +.+.|++.++ ..++|+.||.|+|.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VI--RLNARVTSIEETG--DGVLVVLADG--------RTIRARVVVDARGP 140 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eE--EEccEEEEEEecC--ceEEEEECCC--------CEEEeeEEEECCCc
Confidence 13678889999988877444 33 8999999999876 4666777776 78999999999994
No 140
>PLN02697 lycopene epsilon cyclase
Probab=99.03 E-value=2.9e-09 Score=102.35 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=82.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC---cccccCCCCceee------ccccccccCCCCC-CCCCCC-
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRL------HLAKQFCQLPHLP-FPSSYP- 75 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g---g~~~~~~~~~l~~------~~~~~~~~~~~~~-~~~~~~- 75 (395)
.+||+|||||++|+++|..|++.|++|+++|+...+. |.|... ...+.+ ..+.....++... .....+
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 5899999999999999999999999999999864332 344321 111100 0000000111100 000001
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEE-EEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 76 MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV-KASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
....+..+.+.+.+.+.+.++. ..+++|+++..+. +.+.+ .+.++ ..++|+.||+|+|.++
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG--------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG--------RVIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence 1257788888888888877766 5778999988654 34433 34433 6799999999999876
No 141
>PRK07588 hypothetical protein; Provisional
Probab=99.03 E-value=2.3e-09 Score=100.92 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=81.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC--c-c---cccC------------------CCCceeeccc-c-c
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLA-K-Q 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g--g-~---~~~~------------------~~~~l~~~~~-~-~ 61 (395)
.||+|||||++|+++|..|+++|++|+|+|+.+... | . |... ....+..... . .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 379999999999999999999999999999886542 1 1 1110 0111111100 0 0
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEe
Q 016088 62 FCQLPHLPFPSSYP---MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (395)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (395)
...+....+..... ...++.++.+.+.+.+.. +++ ++++++|++++.++ +.+.|++.++ ..+++
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR--DGVRVTFERG--------TPRDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC--CeEEEEECCC--------CEEEe
Confidence 11111000111110 124566777766654432 444 49999999998765 5677877764 56799
Q ss_pred CEEEEeecCCCCCC
Q 016088 139 RFLVVASGETSNPF 152 (395)
Q Consensus 139 d~vVlAtG~~~~p~ 152 (395)
|.||.|+|..|.-+
T Consensus 148 d~vIgADG~~S~vR 161 (391)
T PRK07588 148 DLVIGADGLHSHVR 161 (391)
T ss_pred CEEEECCCCCccch
Confidence 99999999876544
No 142
>PRK11445 putative oxidoreductase; Provisional
Probab=99.02 E-value=5.1e-09 Score=96.89 Aligned_cols=132 Identities=15% Similarity=0.194 Sum_probs=79.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC---------c-cccc--------CCC-Cceeecccc--ccccCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA---------S-IWKK--------YSY-DRLRLHLAK--QFCQLP 66 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g---------g-~~~~--------~~~-~~l~~~~~~--~~~~~~ 66 (395)
+||+||||||+|+++|..|++. ++|+++|+.+..+ + .+.. ... +......+. ....+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 9999999876431 1 1100 000 000000000 000000
Q ss_pred CC-CCC-C-CCC-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEE
Q 016088 67 HL-PFP-S-SYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (395)
Q Consensus 67 ~~-~~~-~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vV 142 (395)
.. ... . ... ...++.++.+.+.+.+ ..++++ ++++.|+++..++ +.|.|+...+ ++. .+++||.||
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~~---g~~--~~i~a~~vV 150 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVEV--YHNSLCRKIWRED--DGYHVIFRAD---GWE--QHITARYLV 150 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHHH-hcCCEE--EcCCEEEEEEEcC--CEEEEEEecC---CcE--EEEEeCEEE
Confidence 00 000 0 001 1256777777777643 446555 9999999998765 5677775322 121 479999999
Q ss_pred EeecCCCC
Q 016088 143 VASGETSN 150 (395)
Q Consensus 143 lAtG~~~~ 150 (395)
.|+|..|.
T Consensus 151 ~AdG~~S~ 158 (351)
T PRK11445 151 GADGANSM 158 (351)
T ss_pred ECCCCCcH
Confidence 99997653
No 143
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.02 E-value=3.3e-09 Score=99.65 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=83.2
Q ss_pred EEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCC-----------CCceeecc---ccc----cccCC------
Q 016088 11 IIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYS-----------YDRLRLHL---AKQ----FCQLP------ 66 (395)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~-----------~~~l~~~~---~~~----~~~~~------ 66 (395)
+|||||++|+++|..|+++|.+|+|+|+.+..|+.+.... .+.+.... +.. +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 5999999999999999999999999999988776432110 00000000 000 00000
Q ss_pred -----CCCC-----CCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEE
Q 016088 67 -----HLPF-----PSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (395)
Q Consensus 67 -----~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (395)
..++ ...++......++.+.+.+.+++.++.+ +.++.|+++..++ +.|.+.+. + ..+
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~-~--------~~i 147 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETS-G--------GEY 147 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEEC-C--------cEE
Confidence 0000 0001112245788888888888888776 9999999997654 56777663 2 678
Q ss_pred EeCEEEEeecCCCCC
Q 016088 137 SGRFLVVASGETSNP 151 (395)
Q Consensus 137 ~~d~vVlAtG~~~~p 151 (395)
.+|.||+|+|..+.|
T Consensus 148 ~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 148 EADKVILATGGLSYP 162 (400)
T ss_pred EcCEEEECCCCcccC
Confidence 999999999986654
No 144
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.01 E-value=3.4e-09 Score=101.06 Aligned_cols=134 Identities=19% Similarity=0.302 Sum_probs=81.7
Q ss_pred CeEEEECCChHHHHHHHHHhh----cCCCeEEEecCC--CCC--------c---------------------cccc----
Q 016088 8 VEVIIVGAGPSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKK---- 48 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~----~~~~v~vie~~~--~~g--------g---------------------~~~~---- 48 (395)
|||+|||||++|+++|..|++ +|++|+|||+.+ ..- + .|..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 689999999999999999998 799999999843 211 0 1110
Q ss_pred --CCCCceeeccccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC---CcceeeeeeeEEEeEEe-----CCCC
Q 016088 49 --YSYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFN---IVPSIRYQRSVESASYD-----EATN 116 (395)
Q Consensus 49 --~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~i~~~~~V~~i~~~-----~~~~ 116 (395)
..+..+....... ...+.............++..+.+.+.+.+.+.+ +++ +++++|++++.. ++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i--~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKI--LNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEE--ecCCeeEEEEeccccccCCCC
Confidence 0000111100000 0111110000011113466778888877776654 454 999999999752 2234
Q ss_pred cEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 117 MWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
.++|++.++ .+++||.||.|+|..|.-
T Consensus 159 ~v~v~~~~g--------~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 159 WVHITLSDG--------QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred ceEEEEcCC--------CEEEeeEEEEecCCCChh
Confidence 566776654 789999999999976643
No 145
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.01 E-value=6.1e-09 Score=98.01 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=80.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC---C----cc--------------ccc-----CCCCceeecccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY---A----SI--------------WKK-----YSYDRLRLHLAK 60 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~---g----g~--------------~~~-----~~~~~l~~~~~~ 60 (395)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + +. |.. .....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999988741 1 10 100 011111111111
Q ss_pred ccccCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEe-ecCCCCceeeEEEEe
Q 016088 61 QFCQLPHLPFPSS-YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSG 138 (395)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 138 (395)
....+........ .....++.++.+.+.+.+...++++ +++++++++...+ .....|+.. ++ +. .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G----~~--~~i~a 152 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG----EE--HRLDC 152 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC----eE--EEEEe
Confidence 1111110000000 0011234556666665566667666 9999999887522 233445553 32 21 68999
Q ss_pred CEEEEeecCCCCCC
Q 016088 139 RFLVVASGETSNPF 152 (395)
Q Consensus 139 d~vVlAtG~~~~p~ 152 (395)
|+||.|+|..|.-+
T Consensus 153 d~vVgADG~~S~vR 166 (392)
T PRK08243 153 DFIAGCDGFHGVSR 166 (392)
T ss_pred CEEEECCCCCCchh
Confidence 99999999866443
No 146
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.01 E-value=4.6e-09 Score=91.34 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=96.2
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc-----------------------------ccccCC-
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS-----------------------------IWKKYS- 50 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg-----------------------------~~~~~~- 50 (395)
|+++....+++|||||..|+++|..|+++|.++.++|+.+..-. .|+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 34444568999999999999999999999999999998662210 122110
Q ss_pred CCcee-------e---------------c------------cccccccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 016088 51 YDRLR-------L---------------H------------LAKQFCQLP-HLPFPSSYP-------MFVSRAQFIEYLD 88 (395)
Q Consensus 51 ~~~l~-------~---------------~------------~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~ 88 (395)
..+.. + + .....-.|| ..++++.+. +.....+.+..++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 00000 0 0 000000123 333333322 3456678889999
Q ss_pred HHHHhcCCcceeeeeeeEEEeEEeCC-CCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 89 HYVSHFNIVPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 89 ~~~~~~~~~~~i~~~~~V~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+++.|+.+ +.+.+|..+....+ +....|.+.++ ..+.++++|+|+|+|....+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g--------s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG--------SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC--------CeeecceEEEEecHHHHhhcCc
Confidence 9999999887 99999998886543 34455666664 6799999999999998766664
No 147
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.00 E-value=2.3e-09 Score=99.56 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEE-EEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
....+.+.+.+.+++.|+++ +.+++|+++..+. +.|. |.+.+ ..+++|+||+|+|.++.
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~---------g~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD---------GEIRADRVVLAAGAWSP 204 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT---------EEEEECEEEE--GGGHH
T ss_pred cccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc---------cccccceeEecccccce
Confidence 45788899988888889777 9999999999977 7777 88877 44999999999997653
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.99 E-value=2.7e-09 Score=100.18 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=81.6
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCeEEEecCCCCCc----------cccc--------CCCCce----------eeccc
Q 016088 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYAS----------IWKK--------YSYDRL----------RLHLA 59 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~~gg----------~~~~--------~~~~~l----------~~~~~ 59 (395)
||+|||||++|+++|..|+++| ++|+|+|+.+...- .+.. ...+.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999998764311 0000 001111 00000
Q ss_pred cc--cccCCCCCCCCCC-CCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 60 KQ--FCQLPHLPFPSSY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 60 ~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
.. ...+....+.... .....+.++.+.+.+.+... ++++ +++++|+++..++ +.+++++.++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g--------~~ 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG--------QQ 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC--------CE
Confidence 00 0000000000000 01245677888888877763 7666 8899999998765 5677776553 67
Q ss_pred EEeCEEEEeecCCCC
Q 016088 136 YSGRFLVVASGETSN 150 (395)
Q Consensus 136 ~~~d~vVlAtG~~~~ 150 (395)
++||.||.|+|.+|.
T Consensus 149 ~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 149 LRAKLLIAADGANSK 163 (382)
T ss_pred EEeeEEEEecCCChH
Confidence 899999999997663
No 149
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.99 E-value=5.2e-09 Score=98.72 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhc---CCCeEEEecCCCC-----C------ccccc--------CCCCcee---------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ---SIPYVILERENCY-----A------SIWKK--------YSYDRLR--------- 55 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---~~~v~vie~~~~~-----g------g~~~~--------~~~~~l~--------- 55 (395)
.+||+|||||++|+++|..|+++ |++|+|+|+.... + +.+.. ..++.+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 58999999999999999999998 9999999994211 0 01100 0111110
Q ss_pred -eccccccc--cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCc
Q 016088 56 -LHLAKQFC--QLPHLPFPSS-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (395)
Q Consensus 56 -~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~ 130 (395)
........ .+........ ......+..+.+.+.+.+... ++++ +++++|+++...+ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTL--HCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 00000000 0000000000 011234556666666655543 5555 8899999997654 6677777654
Q ss_pred eeeEEEEeCEEEEeecCCCC
Q 016088 131 VIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 131 ~~~~~~~~d~vVlAtG~~~~ 150 (395)
..+++|.||.|+|.++.
T Consensus 154 ---~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 154 ---ETLTGRLLVAADGSHSA 170 (395)
T ss_pred ---CEEEeCEEEEecCCChh
Confidence 67899999999997653
No 150
>PRK07236 hypothetical protein; Provisional
Probab=98.98 E-value=1.2e-08 Score=95.80 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC----Cc-c--ccc--------CCCCceeecccc--c-cccCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY----AS-I--WKK--------YSYDRLRLHLAK--Q-FCQLPHL 68 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~----gg-~--~~~--------~~~~~l~~~~~~--~-~~~~~~~ 68 (395)
.++|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . +.. ...+......+. . .+.....
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 589999999999999999999999999999987632 11 0 100 000000000000 0 0000000
Q ss_pred CCC-CCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016088 69 PFP-SSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (395)
Q Consensus 69 ~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG 146 (395)
... .... ....+..+.+.+.+ .+. ...++++++|+++..++ +.++++..++ .++++|.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~ad~vIgADG 151 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG--------RRETADLLVGADG 151 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC
Confidence 000 0000 11234444444443 222 12359999999998765 5677777765 6789999999999
Q ss_pred CCCCCC
Q 016088 147 ETSNPF 152 (395)
Q Consensus 147 ~~~~p~ 152 (395)
..|..+
T Consensus 152 ~~S~vR 157 (386)
T PRK07236 152 GRSTVR 157 (386)
T ss_pred CCchHH
Confidence 876443
No 151
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.96 E-value=1.6e-08 Score=100.15 Aligned_cols=143 Identities=24% Similarity=0.288 Sum_probs=85.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCeEEEecCCCCCc------cccc------------------CCCCceeeccc-
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYAS------IWKK------------------YSYDRLRLHLA- 59 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-~~~v~vie~~~~~gg------~~~~------------------~~~~~l~~~~~- 59 (395)
.++||+||||||+||++|+.|+++ |++|+|||+.+.... .+.. .....+....+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 368999999999999999999995 999999998863311 0000 00001110000
Q ss_pred ----cccc---cCCCCCC-CCCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCC-CcEEEEEeecCC--
Q 016088 60 ----KQFC---QLPHLPF-PSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKASNLLS-- 127 (395)
Q Consensus 60 ----~~~~---~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~-~~~~v~~~~~~~-- 127 (395)
.... .+..... ...++ ...++..+.+.+.+.+.+.+..+.+++++++++++.+++. ...++++.+..+
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0000 0000000 00111 2346667888888877776654445889999999876422 346666654210
Q ss_pred CCceeeEEEEeCEEEEeecCCCC
Q 016088 128 PGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 128 ~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.++. .+++||+||-|.|..|.
T Consensus 191 ~g~~--~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EGEE--ETVRAKYVVGCDGARSR 211 (634)
T ss_pred CCce--EEEEeCEEEECCCCchH
Confidence 1222 68999999999998763
No 152
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.96 E-value=5.7e-09 Score=100.51 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC-CCCcc-cccCCCCcee----e---cccc-c--------cccCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-CYASI-WKKYSYDRLR----L---HLAK-Q--------FCQLPHL 68 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~-~~gg~-~~~~~~~~l~----~---~~~~-~--------~~~~~~~ 68 (395)
+|||+|||||+||++||..+++.|.+|+++|+.. .+|+. ++.. ..++. . +... . ...+...
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~Cnps-iGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPA-IGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccc-cccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 6999999999999999999999999999999874 44431 1100 00000 0 0000 0 0000000
Q ss_pred CC---CC-CC-CCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEE
Q 016088 69 PF---PS-SY-PMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLV 142 (395)
Q Consensus 69 ~~---~~-~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vV 142 (395)
.. +. +. .....+..+...+.+.+.+. ++. .+++.|+++..++ +....|.+.++ ..+.|+.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG--------~~I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG--------LEFRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC--------CEEECCEEE
Confidence 00 00 00 01234456667776666655 555 4677888887654 23334666554 789999999
Q ss_pred EeecCCC
Q 016088 143 VASGETS 149 (395)
Q Consensus 143 lAtG~~~ 149 (395)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999643
No 153
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.96 E-value=9.1e-09 Score=96.53 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=78.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC--C--C---c-----cccc--------CCCCceee---------c
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC--Y--A---S-----IWKK--------YSYDRLRL---------H 57 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~--~--g---g-----~~~~--------~~~~~l~~---------~ 57 (395)
.+||+|||||++|+++|+.|++.|++|+|||+.+. . . + .+.. ..++.+.. .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 37999999999999999999999999999997641 1 0 0 0110 01111100 0
Q ss_pred ---cccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCcee
Q 016088 58 ---LAKQFCQLPHLPFP-SSYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (395)
Q Consensus 58 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (395)
.......+...... ........+..+...+.+.+... ++++ +++++|++++.++ +.+++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i--~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTL--MCPEKLADLEFSA--EGNRVTLESG------- 151 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEE--ECCCceeEEEEcC--CeEEEEECCC-------
Confidence 00000000000000 00011122344555555544443 4444 9999999998765 5567777664
Q ss_pred eEEEEeCEEEEeecCCCCC
Q 016088 133 EEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~~p 151 (395)
.++++|.||.|+|..|.-
T Consensus 152 -~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 152 -AEIEAKWVIGADGANSQV 169 (384)
T ss_pred -CEEEeeEEEEecCCCchh
Confidence 789999999999976643
No 154
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.96 E-value=8e-09 Score=97.66 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecC-CC--CCc---------------------ccccC------CCCceee
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERE-NC--YAS---------------------IWKKY------SYDRLRL 56 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~-~~--~gg---------------------~~~~~------~~~~l~~ 56 (395)
.+||+|||||++|+++|..|+++|++|+|+|+. +. .+. .|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 579999999999999999999999999999985 21 110 11100 0011111
Q ss_pred ccccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCcee
Q 016088 57 HLAKQ--FCQLPHLPFPS-SYPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVI 132 (395)
Q Consensus 57 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~ 132 (395)
..... ...+....... .+.....+..+.+.+.+.+... ++++ +++++|+++..++ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v--~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTL--LMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEE--EcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 00000 00000000000 0111233455666666656553 4555 8999999998765 4566777654
Q ss_pred eEEEEeCEEEEeecCCCC
Q 016088 133 EEYYSGRFLVVASGETSN 150 (395)
Q Consensus 133 ~~~~~~d~vVlAtG~~~~ 150 (395)
..+++|.||.|+|..|.
T Consensus 153 -~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 153 -QALTAKLVVGADGANSW 169 (405)
T ss_pred -CEEEeCEEEEeCCCCCh
Confidence 68999999999997553
No 155
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.95 E-value=1.8e-08 Score=97.63 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
..+...+...+.+.+..+ +.+++|+++..+. +.|.|.+.++. ++. ..++++.||.|+|.|+.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~--g~~--~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDAD--GET--RTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCC--CCE--EEEEecEEEECCCccHH
Confidence 445555556677778776 9999999998754 56778776643 122 67999999999998764
No 156
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.95 E-value=1.6e-08 Score=97.88 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=36.9
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
|.+. ..+||+|||||..|+++|+.|+++|++|+|+|+.+..+|
T Consensus 1 ~~~~-~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 1 MTMM-ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCCC-CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 4444 369999999999999999999999999999999865444
No 157
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.94 E-value=1.2e-08 Score=95.86 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=77.5
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC------C-c-cccc--------C----------CCCceeeccccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY------A-S-IWKK--------Y----------SYDRLRLHLAKQ 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~------g-g-~~~~--------~----------~~~~l~~~~~~~ 61 (395)
+||+|||||++|+++|..|+++|++|+|+|+.+.. + + .+.. . ....+.......
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 69999999999999999999999999999988741 1 1 1100 0 111111111111
Q ss_pred cccCCCCCCCCCCCC-CCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEe-ecCCCCceeeEEEEeC
Q 016088 62 FCQLPHLPFPSSYPM-FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGRVIEEYYSGR 139 (395)
Q Consensus 62 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d 139 (395)
...+........... ...+..+...+.+.+...+..+ +++++++.+...+ .....|+.. ++.. ..+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g~~------~~i~ad 153 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDGER------HRLDCD 153 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECCeE------EEEEeC
Confidence 111100000000000 1134455666666666666655 8888877775422 123346664 4321 579999
Q ss_pred EEEEeecCCCCCC
Q 016088 140 FLVVASGETSNPF 152 (395)
Q Consensus 140 ~vVlAtG~~~~p~ 152 (395)
.||.|.|..|.-+
T Consensus 154 lvIGADG~~S~VR 166 (390)
T TIGR02360 154 FIAGCDGFHGVSR 166 (390)
T ss_pred EEEECCCCchhhH
Confidence 9999999877433
No 158
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=2.7e-08 Score=96.38 Aligned_cols=137 Identities=19% Similarity=0.147 Sum_probs=81.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc--cC-C--------------------CCcee-----e-
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK--KY-S--------------------YDRLR-----L- 56 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~--~~-~--------------------~~~l~-----~- 56 (395)
.++||+|||+|.+|+++|..+++.|.+|+|+||.+..||.-. .. . +..+. .
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999999999987776211 00 0 00000 0
Q ss_pred ----------ccccc--c-----ccCCCCC------CCC-CCC--CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeE
Q 016088 57 ----------HLAKQ--F-----CQLPHLP------FPS-SYP--MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESAS 110 (395)
Q Consensus 57 ----------~~~~~--~-----~~~~~~~------~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~ 110 (395)
+.+.. + ..+.... ... +.+ .......+.+.+.+.+++.++++ ++++.|+++.
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i--~~~t~v~~l~ 217 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPL--FVNADVTKIT 217 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeE--EeCCeeEEEE
Confidence 00000 0 0000000 000 000 11123457777777788888776 9999999997
Q ss_pred EeCCCCc-EEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 111 YDEATNM-WNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 111 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.++ +. ..+...... ++. ..++++.||+|+|.+..
T Consensus 218 ~~~--g~V~Gv~~~~~~--g~~--~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 218 EKD--GKVTGVKVKING--KET--KTISSKAVVVTTGGFGA 252 (506)
T ss_pred ecC--CEEEEEEEEeCC--CeE--EEEecCeEEEeCCCccc
Confidence 643 43 223332221 121 67999999999997653
No 159
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.93 E-value=1.3e-08 Score=95.44 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
....+...+.+.++..++.+ +.+++|+++..+. +.+.|.+.+ .++++|+||+|+|.++..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~---------~~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK---------GSYQANKLVVTAGAWTSK 202 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC---------CEEEeCEEEEecCcchHH
Confidence 34567777777777778776 8899999998754 566676543 578999999999976543
No 160
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.93 E-value=3.2e-08 Score=94.64 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=83.4
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCeEEEecCCCCCcccc--------cCC-------C-Cce-------------eec-
Q 016088 9 EVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------Y-DRL-------------RLH- 57 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~~gg~~~--------~~~-------~-~~l-------------~~~- 57 (395)
||+|||+|.+|+++|..++++| .+|+|+||.+..||... ... . +.. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999887665311 100 0 000 000
Q ss_pred ---------ccc--ccccCCCCCC-------------CCC-C--CCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeE
Q 016088 58 ---------LAK--QFCQLPHLPF-------------PSS-Y--PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESAS 110 (395)
Q Consensus 58 ---------~~~--~~~~~~~~~~-------------~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~ 110 (395)
.+. .++. ....+ +.. . ........+.+.+.+.+++.++++ ++++.|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeE
Confidence 000 0000 00000 000 0 011344678888888888888776 9999999998
Q ss_pred EeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 111 YDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.+++.....+...+.. ++. ..+.++.||+|+|.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~--g~~--~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKG--KGI--YIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCC--CeE--EEEecceEEEecCCCCC
Confidence 8653333334444321 121 46889999999997664
No 161
>PLN02661 Putative thiazole synthesis
Probab=98.92 E-value=7e-09 Score=93.22 Aligned_cols=138 Identities=19% Similarity=0.247 Sum_probs=78.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhc-CCCeEEEecCCCCCc-ccccCC-CCceeecccc-ccccCCCCCCCC--CCCCCCCH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYS-YDRLRLHLAK-QFCQLPHLPFPS--SYPMFVSR 80 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~-~~~v~vie~~~~~gg-~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~~ 80 (395)
++||+|||||++|+++|..|++. +.+|+|||+....|| .|.... +....+..+. .+..-...++.. .+....+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 58999999999999999999986 899999999887765 665332 1111111110 000001111111 11111133
Q ss_pred HHHHHHHHHHH-HhcCCcceeeeeeeEEEeEEeCCCCcEEEE------EeecCCCCceeeEEEEeCEEEEeecC
Q 016088 81 AQFIEYLDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVK------ASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 81 ~~~~~~l~~~~-~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
.++...+...+ ++.++++ +.++.++++..++ +...-+. ..++.+.....+..++++.||+|||+
T Consensus 172 ~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 45555555544 3456665 8899999988754 2222222 12211100001157999999999995
No 162
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.92 E-value=1.5e-08 Score=94.91 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
....+...+.+.+.+.++++ +.+++|+++.... +.+.|.+.+ ..+++|+||+|+|.++....
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~---------g~~~a~~vV~A~G~~~~~l~ 208 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAEL--LFNEPVTAIEADG--DGVTVTTAD---------GTYEAKKLVVSAGAWVKDLL 208 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEeeC--CeEEEEeCC---------CEEEeeEEEEecCcchhhhc
Confidence 33556666666666777766 8899999998755 567777654 56899999999998765433
No 163
>PRK06996 hypothetical protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=95.60 Aligned_cols=133 Identities=18% Similarity=0.249 Sum_probs=83.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcC----CCeEEEecCCCCC---------------------cccccC--CCCceeec
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKY--SYDRLRLH 57 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~----~~v~vie~~~~~g---------------------g~~~~~--~~~~l~~~ 57 (395)
+..+||+||||||+|+++|..|+++| ++|+|+|+.+... |.|... .+..+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 34689999999999999999999987 4799999875221 112111 11111111
Q ss_pred cccc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceee
Q 016088 58 LAKQ----FCQLPHLPFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIE 133 (395)
Q Consensus 58 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~ 133 (395)
.... .+.......+ ......++..+.+.+.+.+...++.+ ++++++++++.+. ..++++..++.+ +
T Consensus 89 ~~~~~g~~~~~~~~~~~~-~~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g--~--- 158 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVP-ALGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQG--A--- 158 (398)
T ss_pred cCCCCceEEecccccCCC-cCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCc--c---
Confidence 0000 0001111110 01113567788888888888877655 8999999997655 567777664321 2
Q ss_pred EEEEeCEEEEeecC
Q 016088 134 EYYSGRFLVVASGE 147 (395)
Q Consensus 134 ~~~~~d~vVlAtG~ 147 (395)
.+++||+||.|+|.
T Consensus 159 ~~i~a~lvIgADG~ 172 (398)
T PRK06996 159 RTLRARIAVQAEGG 172 (398)
T ss_pred eEEeeeEEEECCCC
Confidence 57999999999995
No 164
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.91 E-value=1e-09 Score=104.06 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=35.7
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCC---Cceeec------cccccc-cCCC---CC--CCC-
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSY---DRLRLH------LAKQFC-QLPH---LP--FPS- 72 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~---~~l~~~------~~~~~~-~~~~---~~--~~~- 72 (395)
||||||||++|++||..+++.|.+|+|||+.+.+||....... ...... ....+. .+.. .+ ...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 8999999999999999999999999999999999996654321 111100 000000 0000 00 000
Q ss_pred CC-CCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 73 SY-PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 73 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
+. ........+...+.+.+.+.++++ ++++.|.++..+. +....|.+.+.. |. ..++|+.+|.|||.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~--g~---~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKS--GR---KEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccc--cc---cccccccccccccc
Confidence 00 012344455566677777778887 9999999998864 234445554421 12 89999999999994
No 165
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.90 E-value=2.5e-08 Score=70.76 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=64.8
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYLD 88 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (395)
+|+|||||+.|+.+|..|++.|.+|+++++.+.+. .....++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~---------------------------------~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL---------------------------------PGFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS---------------------------------TTSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh---------------------------------hhcCHHHHHHHH
Confidence 58999999999999999999999999999988432 112357788888
Q ss_pred HHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEee
Q 016088 89 HYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASN 124 (395)
Q Consensus 89 ~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~ 124 (395)
+.+++.++++ ++++.+.++..+++ + +.|++++
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~~-~-~~V~~~~ 79 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDGD-G-VEVTLED 79 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEETT-S-EEEEEET
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeCC-E-EEEEEec
Confidence 8888888877 99999999998873 3 5577765
No 166
>PRK07538 hypothetical protein; Provisional
Probab=98.90 E-value=4.3e-08 Score=92.92 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=81.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC----cc--ccc--------CCC----------Cceeeccc--cc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YSY----------DRLRLHLA--KQ 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g----g~--~~~--------~~~----------~~l~~~~~--~~ 61 (395)
.||+|||||++|+++|..|+++|++|+|+|+.+.+. |. +.. ..+ ..+..... ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 479999999999999999999999999999987542 10 000 000 11111100 00
Q ss_pred cccCCCCCC-CCCCC-CCCCHHHHHHHHHHHHHh-cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEe
Q 016088 62 FCQLPHLPF-PSSYP-MFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSG 138 (395)
Q Consensus 62 ~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 138 (395)
.+..+.... ...++ ...++.++.+.+.+.+.+ .+.. .++++++|+++..++ +...+...++.. ++. .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~-~i~~~~~v~~~~~~~--~~~~~~~~~~~~-g~~--~~~~a 154 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPD-AVRTGHRVVGFEQDA--DVTVVFLGDRAG-GDL--VSVRG 154 (413)
T ss_pred EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCc-EEEcCCEEEEEEecC--CceEEEEeccCC-Ccc--ceEEe
Confidence 000000000 00011 125677888877766644 3432 349999999998765 334455444321 121 68999
Q ss_pred CEEEEeecCCCCC
Q 016088 139 RFLVVASGETSNP 151 (395)
Q Consensus 139 d~vVlAtG~~~~p 151 (395)
|.||.|+|..|.-
T Consensus 155 dlvIgADG~~S~v 167 (413)
T PRK07538 155 DVLIGADGIHSAV 167 (413)
T ss_pred eEEEECCCCCHHH
Confidence 9999999986643
No 167
>PRK05868 hypothetical protein; Validated
Probab=98.89 E-value=3.9e-08 Score=91.72 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=78.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc------ccc--------C----------CCCceeeccccc--
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI------WKK--------Y----------SYDRLRLHLAKQ-- 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~------~~~--------~----------~~~~l~~~~~~~-- 61 (395)
.||+|||||++|+++|..|+++|++|+|||+.+..... +.. . ....+....+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 48999999999999999999999999999988754310 000 0 111111111100
Q ss_pred cccCCC-CCCCCCC--C-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEE
Q 016088 62 FCQLPH-LPFPSSY--P-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYS 137 (395)
Q Consensus 62 ~~~~~~-~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 137 (395)
...... .+..... + ....+.++.+.+.+.+ ..++++ +++++|++++.++ +..+|+..++ .+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i--~~~~~v~~i~~~~--~~v~v~~~dg--------~~~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEY--LFDDSISTLQDDG--DSVRVTFERA--------AARE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEE--EeCCEEEEEEecC--CeEEEEECCC--------CeEE
Confidence 000000 0000000 0 0123455555554422 335444 9999999997654 5666777665 6789
Q ss_pred eCEEEEeecCCCCCC
Q 016088 138 GRFLVVASGETSNPF 152 (395)
Q Consensus 138 ~d~vVlAtG~~~~p~ 152 (395)
+|.||.|.|..|.-+
T Consensus 149 adlvIgADG~~S~vR 163 (372)
T PRK05868 149 FDLVIGADGLHSNVR 163 (372)
T ss_pred eCEEEECCCCCchHH
Confidence 999999999876443
No 168
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.88 E-value=5.5e-08 Score=89.42 Aligned_cols=133 Identities=19% Similarity=0.221 Sum_probs=79.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC--cccccCCC-------Ccee------------ecc---------
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA--SIWKKYSY-------DRLR------------LHL--------- 58 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g--g~~~~~~~-------~~l~------------~~~--------- 58 (395)
||+|||+|.|||++|+.|.+. ++|+|+.|.+... ..|.+.-. +... ++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999987442 13333200 0000 000
Q ss_pred --ccccccC--CCCCCCCCC--------------------CCCCCHHHHHHHHHHHHHh-cCCcceeeeeeeEEEeEEeC
Q 016088 59 --AKQFCQL--PHLPFPSSY--------------------PMFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYDE 113 (395)
Q Consensus 59 --~~~~~~~--~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~~~ 113 (395)
+...-.+ ...++..+. .. .++..+...+...++. .++++ +-+..+.++-.++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG~~I~~~L~~~v~~~p~I~v--~e~~~a~~li~~~ 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATGKEIMTALLKKVRNRPNITV--LEGAEALDLIIED 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-CccHHHHHHHHHHHhcCCCcEE--EecchhhhhhhcC
Confidence 0000000 011111111 11 4668999999887766 46555 8888888887665
Q ss_pred CCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 114 ATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
....--+.+.+... +. ..++++.+|+|||..+
T Consensus 165 ~~~~~Gv~~~~~~~--~~--~~~~a~~vVLATGG~g 196 (518)
T COG0029 165 GIGVAGVLVLNRNG--EL--GTFRAKAVVLATGGLG 196 (518)
T ss_pred CceEeEEEEecCCC--eE--EEEecCeEEEecCCCc
Confidence 21111344433211 22 7899999999999754
No 169
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=2.4e-08 Score=94.69 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=78.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcC-CCeEEEecCCCCCcc------ccc--------CCCCceee-----ccc--cccccC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENCYASI------WKK--------YSYDRLRL-----HLA--KQFCQL 65 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~~gg~------~~~--------~~~~~l~~-----~~~--~~~~~~ 65 (395)
.+|+|||||++|+++|..|+++| ++|+|+|+.+.++.. +.. ...+.+.. ..+ ...+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 36999999999999999999998 599999998765421 110 00000000 000 000000
Q ss_pred CC--------CCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEE
Q 016088 66 PH--------LPFPSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYY 136 (395)
Q Consensus 66 ~~--------~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~ 136 (395)
.. ........ ....+.++.+.+.+.+.. .. ++++++|++++.++ +.|.+...++ .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~--v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GI--ASFGKRATQIEEQA--EEVQVLFTDG--------TEY 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ce--EEcCCEEEEEEecC--CcEEEEEcCC--------CEE
Confidence 00 00000001 124566777777655422 22 48999999998765 5688887664 678
Q ss_pred EeCEEEEeecCCCC
Q 016088 137 SGRFLVVASGETSN 150 (395)
Q Consensus 137 ~~d~vVlAtG~~~~ 150 (395)
++|.||.|+|..|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998764
No 170
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.87 E-value=2.5e-08 Score=94.11 Aligned_cols=136 Identities=20% Similarity=0.151 Sum_probs=83.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc------cccc--------CCCCc----------eeeccccc--
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS------IWKK--------YSYDR----------LRLHLAKQ-- 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg------~~~~--------~~~~~----------l~~~~~~~-- 61 (395)
.+|+|||||++|+++|..|+++|++|+|+|+.+.+.. .+.. ..++. +.......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 5799999999999999999999999999998875421 0000 00111 00000000
Q ss_pred -cccCCCCCCC-C-C-CCC-CCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEE
Q 016088 62 -FCQLPHLPFP-S-S-YPM-FVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEY 135 (395)
Q Consensus 62 -~~~~~~~~~~-~-~-~~~-~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 135 (395)
.......... . + .+. ..++.++.+.+.+.+.+. ++++ +++++|+++..++ +.+.++..++.+ . ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v--~~~~~v~~~~~~~--~~v~v~~~~~~~--~---~~ 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEI--KLGAEMTSQRQTG--NSITATIIRTNS--V---ET 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEE--EECCEEEEEecCC--CceEEEEEeCCC--C---cE
Confidence 0000000000 0 0 011 246778888888776553 5555 9999999998754 556666644321 1 57
Q ss_pred EEeCEEEEeecCCCCCC
Q 016088 136 YSGRFLVVASGETSNPF 152 (395)
Q Consensus 136 ~~~d~vVlAtG~~~~p~ 152 (395)
+++|.||.|.|..|.-+
T Consensus 154 ~~adlvIgADG~~S~vR 170 (400)
T PRK06475 154 VSAAYLIACDGVWSMLR 170 (400)
T ss_pred EecCEEEECCCccHhHH
Confidence 89999999999877443
No 171
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.86 E-value=3.1e-08 Score=93.30 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
....+.+.+.+.+++.++++ +++++|+++.... +.|.|.+.+ ..+++|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~---------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ---------GEYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC---------CEEEeCEEEECCCcch
Confidence 34677777777777878776 8899999998754 556676643 5689999999999865
No 172
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.86 E-value=6.9e-09 Score=73.70 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=57.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPR 267 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (395)
+++|||+|.+|+|+|..|++.|.+|+++.+++ +++|..+......+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~~--------------------------------- 46 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKIL--------------------------------- 46 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHHH---------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHHH---------------------------------
Confidence 58999999999999999999999999999999 44444444333333
Q ss_pred CCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--e--EEecCC
Q 016088 268 EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENG 315 (395)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~--~--v~~~~g 315 (395)
.+.+++.+|+++.+ +++++.+ + |.++||
T Consensus 47 --------------------~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 47 --------------------EEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp --------------------HHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred --------------------HHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 45577789999998 7777654 3 666665
No 173
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.86 E-value=9.6e-09 Score=94.93 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
...++...+.+.+.+.+..+ +++++|+++++..+ +.+.+.+.++.. . ++|+.||.|.|.++.
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i--~ln~eV~~i~~~~d-g~~~~~~~~g~~------~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 151 DPGELTRALAEEAQANGVEL--RLNTEVTGIEKQSD-GVFVLNTSNGEE------T-LEAKFVINAAGLYAD 212 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEE--EecCeeeEEEEeCC-ceEEEEecCCcE------E-EEeeEEEECCchhHH
Confidence 34566777777777778777 99999999999772 356666766521 3 999999999997653
No 174
>PLN02985 squalene monooxygenase
Probab=98.85 E-value=5.4e-08 Score=94.07 Aligned_cols=138 Identities=22% Similarity=0.209 Sum_probs=77.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC----ccccc----------C-----------CCCceeecccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA----SIWKK----------Y-----------SYDRLRLHLAK 60 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g----g~~~~----------~-----------~~~~l~~~~~~ 60 (395)
..+||+|||||++|+++|..|++.|++|+|+|+.+... |.+.. . ...++......
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 46899999999999999999999999999999875221 11100 0 01111111111
Q ss_pred cc--ccCCCCC--CCCC-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeE
Q 016088 61 QF--CQLPHLP--FPSS-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEE 134 (395)
Q Consensus 61 ~~--~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~ 134 (395)
.. ..++... .+.. .....++.++.+.+.+.+... ++.. . ..+++++..++ +....|+....+ |+. .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~-~gtvv~li~~~-~~v~gV~~~~~d--G~~--~ 193 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--E-EGTVKSLIEEK-GVIKGVTYKNSA--GEE--T 193 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--E-eeeEEEEEEcC-CEEEEEEEEcCC--CCE--E
Confidence 00 1111100 0000 012345678888888877665 4553 4 44677665543 222234443221 121 5
Q ss_pred EEEeCEEEEeecCCCCC
Q 016088 135 YYSGRFLVVASGETSNP 151 (395)
Q Consensus 135 ~~~~d~vVlAtG~~~~p 151 (395)
++++|.||.|+|..|.-
T Consensus 194 ~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 194 TALAPLTVVCDGCYSNL 210 (514)
T ss_pred EEECCEEEECCCCchHH
Confidence 68899999999987743
No 175
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.84 E-value=5.2e-08 Score=95.23 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=33.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
.+||+|||||..|+++|+.|+++|++|+|||+.+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 689999999999999999999999999999997643
No 176
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.83 E-value=5.2e-09 Score=71.29 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=41.5
Q ss_pred EECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccc
Q 016088 12 IVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQ 61 (395)
Q Consensus 12 IIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~ 61 (395)
|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++...+....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~ 50 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAH 50 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccE
Confidence 89999999999999999999999999999999988876566655554433
No 177
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.83 E-value=5.3e-08 Score=92.52 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=79.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc--C-----C--C-------C--------------------
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK--Y-----S--Y-------D-------------------- 52 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~--~-----~--~-------~-------------------- 52 (395)
||+|||+|.+|++||+.++++|.+|+|+||.+..||.... . . . +
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 7999999999999999999999999999999986662111 0 0 0 0
Q ss_pred -------------------ceeecc--cc--ccccCCCCCCC----CCC-----CCCCCHHHHHHHHHHHHHhcCCccee
Q 016088 53 -------------------RLRLHL--AK--QFCQLPHLPFP----SSY-----PMFVSRAQFIEYLDHYVSHFNIVPSI 100 (395)
Q Consensus 53 -------------------~l~~~~--~~--~~~~~~~~~~~----~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~i 100 (395)
++.... .. ....+...... ... ........+...+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i-- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI-- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE--
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee--
Confidence 000000 00 00000000000 000 011246778889999999999766
Q ss_pred eeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 101 RYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 101 ~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++++.++++..++ +...-+...+... ++. ..++++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~-g~V~Gv~~~~~~~-g~~--~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITED-GRVTGVVAENPAD-GEF--VRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEET-TEEEEEEEEETTT-CEE--EEEEESEEEE----BGG
T ss_pred eccceeeeEEEeC-CceeEEEEEECCC-CeE--EEEeeeEEEeccCcccc
Confidence 9999999999865 2333344442211 232 68999999999997665
No 178
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.80 E-value=6.5e-08 Score=92.57 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHh----cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 79 SRAQFIEYLDHYVSH----FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~----~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
....+...+.+.+.+ .+..+.++++++|+++.... ++.|.|++.+ .+++||+||+|+|.|+.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~---------G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR---------GEIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC---------CEEEeCEEEECcChhHH
Confidence 445667777777777 66444459999999998763 3568887764 67999999999998774
No 179
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.79 E-value=1.2e-07 Score=90.37 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCC
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA 43 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~g 43 (395)
.+.+||+|||||++|+++|..|++. +.+|+|+|+.+.+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 3468999999999999999999998 78999999944443
No 180
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.79 E-value=7.4e-08 Score=91.03 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
..+||+|||||+.|+.+|..++.+|++|+|+|+++...|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 579999999999999999999999999999999987766543
No 181
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.77 E-value=2.7e-08 Score=90.86 Aligned_cols=127 Identities=16% Similarity=0.192 Sum_probs=73.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEE-ecCCCCCcc-cccC--------------CCCceeecccccc-ccCCCCC--
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVIL-ERENCYASI-WKKY--------------SYDRLRLHLAKQF-CQLPHLP-- 69 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vi-e~~~~~gg~-~~~~--------------~~~~l~~~~~~~~-~~~~~~~-- 69 (395)
||+|||||.||+.||..+++.|.+|+++ .+.+.++.. ++.+ ...++........ ..+....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 344444331 1110 0000000000000 0000000
Q ss_pred --CCCC-CCCCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEee
Q 016088 70 --FPSS-YPMFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVAS 145 (395)
Q Consensus 70 --~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAt 145 (395)
.+.+ ......+..+..++++.++.. ++. .++.+|+++..+. +....|.+.++ ..+.+|.||+||
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~-~~v~GV~~~~g--------~~~~a~~vVlaT 148 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVEN-GKVKGVVTKDG--------EEIEADAVVLAT 148 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECT-TEEEEEEETTS--------EEEEECEEEE-T
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecC-CeEEEEEeCCC--------CEEecCEEEEec
Confidence 0001 001356788888998888774 554 5688999998765 34556777665 899999999999
Q ss_pred cC
Q 016088 146 GE 147 (395)
Q Consensus 146 G~ 147 (395)
|.
T Consensus 149 Gt 150 (392)
T PF01134_consen 149 GT 150 (392)
T ss_dssp TT
T ss_pred cc
Confidence 94
No 182
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.77 E-value=2.2e-07 Score=89.55 Aligned_cols=137 Identities=17% Similarity=0.256 Sum_probs=80.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC--CCcccc--cCC---CC---c-eee-ccccccc-----------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC--YASIWK--KYS---YD---R-LRL-HLAKQFC----------- 63 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~--~gg~~~--~~~---~~---~-l~~-~~~~~~~----------- 63 (395)
++||+|||+|++|+++|..+++.|.+|+|+||.+. .||.-. ... .. . ... ..+...+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999873 444211 000 00 0 000 0000000
Q ss_pred ----------------c-C--CCCCCCC----CC--C-----CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeC
Q 016088 64 ----------------Q-L--PHLPFPS----SY--P-----MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDE 113 (395)
Q Consensus 64 ----------------~-~--~~~~~~~----~~--~-----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~ 113 (395)
. + ...++.. .. . .......+...+.+.+++.++++ +++++|+++..++
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~~~ 161 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALELDD 161 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEecC
Confidence 0 0 0000000 00 0 00113567778888888888776 9999999998743
Q ss_pred CCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 114 ATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 114 ~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+....+...... ++. ..++++.||+|||.+..
T Consensus 162 -g~v~gv~~~~~~--g~~--~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 -GRFVGARAGSAA--GGA--ERIRAKAVVLAAGGFES 193 (466)
T ss_pred -CeEEEEEEEccC--Cce--EEEECCEEEECCCCCCC
Confidence 223334442211 121 67899999999997543
No 183
>PRK07121 hypothetical protein; Validated
Probab=98.77 E-value=2.9e-07 Score=89.23 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.++||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 368999999999999999999999999999999887665
No 184
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.76 E-value=1.2e-07 Score=93.83 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
..+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 459999999999999999999999999999999864444
No 185
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.76 E-value=8.5e-08 Score=89.45 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~ 41 (395)
+||+|||||++|+++|..|+++|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999998763
No 186
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.76 E-value=1.9e-07 Score=88.56 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
..+...+.+.+.+.++.+ +.+++|+++..++ +.+.+.+.++.. .+. ..+++|+||+|+|.++.
T Consensus 197 ~~~~~~l~~~a~~~G~~i--~~~~~V~~i~~~~--~~~~v~~~~~~~-~~~--~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQF--RYGQEVTSIKTDG--GGVVLTVQPSAE-HPS--RTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEE--EcCCEEEEEEEeC--CEEEEEEEcCCC-Ccc--ceEecCEEEECCCcChH
Confidence 455666677777888776 8899999998755 566666544310 001 47899999999998763
No 187
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.76 E-value=2.6e-07 Score=89.11 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=77.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999877321 00 12456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.+++.++++ +.+++|++++..++++...+...++.. ..+.+|.||+|+| .+|+...
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g~~------~~i~~D~vi~a~G--~~p~~~~ 285 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNGEE------KTLEADKVLVSVG--RRPNTEG 285 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCCce------EEEEeCEEEEeeC--CccCCCC
Confidence 777777888777 999999999752212332233333321 5799999999999 6676543
No 188
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=2.7e-07 Score=90.86 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=84.9
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc--------cccc-C--CCCcee--------------
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS--------IWKK-Y--SYDRLR-------------- 55 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg--------~~~~-~--~~~~l~-------------- 55 (395)
|+.....+||+|||+|.||++||..+++.|.+|+|+||....+| .+.. . .-+...
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~ 80 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIG 80 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCC
Confidence 55445578999999999999999999999999999999865443 1110 0 000000
Q ss_pred ---------eccccccccC--CCCCCCC---------CCCC-----------------CCCHHHHHHHHHHHHHhcCCcc
Q 016088 56 ---------LHLAKQFCQL--PHLPFPS---------SYPM-----------------FVSRAQFIEYLDHYVSHFNIVP 98 (395)
Q Consensus 56 ---------~~~~~~~~~~--~~~~~~~---------~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~ 98 (395)
-+.+..+-.+ ...++.. .... -.++..+...+.+.+.+.++++
T Consensus 81 d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i 160 (588)
T PRK08958 81 DQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI 160 (588)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEE
Confidence 0000000000 0011100 0000 0145678888877777777666
Q ss_pred eeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+.++.++++..++++...-+...+... ++. ..+.++.||+|||.+..
T Consensus 161 --~~~~~~~~Li~~~~g~v~Gv~~~~~~~-g~~--~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 161 --FSEWYALDLVKNQDGAVVGCTAICIET-GEV--VYFKARATVLATGGAGR 207 (588)
T ss_pred --EeCcEEEEEEECCCCEEEEEEEEEcCC-CcE--EEEEcCeEEECCCCccc
Confidence 999999998875322233333322111 232 67899999999998764
No 189
>PRK08275 putative oxidoreductase; Provisional
Probab=98.75 E-value=3.1e-07 Score=90.08 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=83.2
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCC-CcccccC--CCCc-ee--eccccccc---------
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQFC--------- 63 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~-gg~~~~~--~~~~-l~--~~~~~~~~--------- 63 (395)
|......+||+|||+|.||++||..+++. |.+|+|+||.+.. +|..... .... +. .+.+...+
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 44444568999999999999999999987 6899999998753 2221100 0000 00 00000000
Q ss_pred -------------------cC--CCCCCCC------------CCC----CCCCHHHHHHHHHHHHHhcCCcceeeeeeeE
Q 016088 64 -------------------QL--PHLPFPS------------SYP----MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSV 106 (395)
Q Consensus 64 -------------------~~--~~~~~~~------------~~~----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V 106 (395)
.+ ...++.. ... ...++..+.+.+.+.+++.++++ +.++.+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v 160 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA 160 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence 00 0000000 000 01245678888888888878776 999999
Q ss_pred EEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 107 ESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 107 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+++..+++....-+...+... ++. ..++++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~-g~~--~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 161 TRLLTDADGRVAGALGFDCRT-GEF--LVIRAKAVILCCGAAGR 201 (554)
T ss_pred EEEEEcCCCeEEEEEEEecCC-CcE--EEEECCEEEECCCCccc
Confidence 999775322222233222111 122 57899999999997654
No 190
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.75 E-value=8.2e-08 Score=89.18 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=72.8
Q ss_pred eEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCc--ccccCCC--Cc---------eeeccccccccCCCCCCCCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSY--DR---------LRLHLAKQFCQLPHLPFPSS 73 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg--~~~~~~~--~~---------l~~~~~~~~~~~~~~~~~~~ 73 (395)
||+|||||+||+++|..|.+. |++|+++|+.+..++ +|..-.. .. +....+.....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999887776 3421100 00 00011111111110000000
Q ss_pred -CCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 74 -YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 74 -~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
.-..+.+.++.+++.+.+.. . +.++++|++++ . +. |++.++ .+++|+.||.|.|..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~---~--i~~~~~V~~v~--~--~~--v~l~dg--------~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPE---G--VILGRKAVGLD--A--DG--VDLAPG--------TRINARSVIDCRGFK 137 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcc---c--EEecCEEEEEe--C--CE--EEECCC--------CEEEeeEEEECCCCC
Confidence 01234566777776544322 2 37788998884 2 33 444443 789999999999954
No 191
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.74 E-value=1.4e-07 Score=89.27 Aligned_cols=35 Identities=43% Similarity=0.562 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CC-CeEEEecCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ-SI-PYVILEREN 40 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-~~-~v~vie~~~ 40 (395)
.++||+|||||..|+++|..|+++ |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 468999999999999999999995 85 899999875
No 192
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.74 E-value=8.8e-08 Score=91.97 Aligned_cols=60 Identities=7% Similarity=-0.011 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
+...+...+.+.+++.++.+ +.++.|++++. .+.+.|.+.+ ..++||.||+|+|.|+...
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i--~~~t~V~~i~~---~~~~~v~t~~---------g~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEI--HENTPMTGLEE---GQPAVVRTPD---------GQVTADKVVLALNAWMASH 240 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEE--ECCCeEEEEee---CCceEEEeCC---------cEEECCEEEEccccccccc
Confidence 34566677777777888776 89999999974 2446676654 5689999999999876543
No 193
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.73 E-value=6.9e-08 Score=96.84 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
....+...+.+.+.. ++++ +++++|+++.... +.|.|.+.++ ..+++|.||+|+|.++..
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i--~~~~~V~~i~~~~--~~~~v~t~~g--------~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTI--HFGHEVARLERED--DGWQLDFAGG--------TLASAPVVVLANGHDAAR 465 (662)
T ss_pred CHHHHHHHHHHhccc-CcEE--EeCCEeeEEEEeC--CEEEEEECCC--------cEEECCEEEECCCCCccc
Confidence 345666666666666 6665 8899999998765 6788776543 567899999999987643
No 194
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=6.8e-08 Score=95.29 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
.++||+|||||.||++||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 46899999999999999999999999999999986443
No 195
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.72 E-value=5.1e-07 Score=86.96 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------------------PG--EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999877321 00 12356667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|++++.++ +.+.+...++.. ..+.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g~~------~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGGET------ETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCCcE------EEEEeCEEEEecC--CcccCC
Confidence 777777778776 9999999998754 455555544311 5799999999999 666655
No 196
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.71 E-value=4.4e-07 Score=89.88 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc--cccCCC---------Cce--------e----e------
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKKYSY---------DRL--------R----L------ 56 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~--~~~~~~---------~~l--------~----~------ 56 (395)
..+||+|||+|.||++||..+++.|.+|+|+||....+|. +....+ +.. . +
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv 128 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 128 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 3589999999999999999999999999999998755441 110000 000 0 0
Q ss_pred -----ccccccccC--CCCCCCC---------CCC------------------CCCCHHHHHHHHHHHHHhcCCcceeee
Q 016088 57 -----HLAKQFCQL--PHLPFPS---------SYP------------------MFVSRAQFIEYLDHYVSHFNIVPSIRY 102 (395)
Q Consensus 57 -----~~~~~~~~~--~~~~~~~---------~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~i~~ 102 (395)
+.+..+-.+ ...++.. .+. .-.++..+.+.+.+.+.+.++++ +.
T Consensus 129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i--~~ 206 (635)
T PLN00128 129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQF--FV 206 (635)
T ss_pred HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEE--EE
Confidence 000000000 0011100 000 01245677888877777777666 99
Q ss_pred eeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 103 QRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 103 ~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
++.++++..++++...-+...+... ++. ..+.++.||+|||.+....
T Consensus 207 ~~~~~~Li~~~~g~v~Gv~~~~~~~-g~~--~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 207 EYFALDLIMDSDGACQGVIALNMED-GTL--HRFRAHSTILATGGYGRAY 253 (635)
T ss_pred eeEEEEEEEcCCCEEEEEEEEEcCC-CeE--EEEEcCeEEECCCCCcccc
Confidence 9999998765322222333322111 232 6889999999999876543
No 197
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.71 E-value=5.2e-07 Score=89.31 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=83.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc--ccCCCCcee----eccc--------------------
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW--KKYSYDRLR----LHLA-------------------- 59 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~--~~~~~~~l~----~~~~-------------------- 59 (395)
.++||+|||+|.||++||..+++.|.+|+|+||.+..++.. ......... -+.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 36899999999999999999999999999999987655421 110000000 0000
Q ss_pred --------cccccC--CCCCCC---C------CCC------------------CCCCHHHHHHHHHHHHHhcCCcceeee
Q 016088 60 --------KQFCQL--PHLPFP---S------SYP------------------MFVSRAQFIEYLDHYVSHFNIVPSIRY 102 (395)
Q Consensus 60 --------~~~~~~--~~~~~~---~------~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~i~~ 102 (395)
..+-.+ ...++. . .+. .-.++..+...+.+.+.+.++++ +.
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i--~~ 185 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNF--FI 185 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEE--Ee
Confidence 000000 000000 0 000 01145678888888888878776 99
Q ss_pred eeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 103 QRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 103 ~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
++.++++..++++...-+...+... ++. ..+.++.||+|||.+....
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~~~~-g~~--~~i~AkaVVLATGG~~~~~ 232 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMSMED-GSI--HRFRAHYTVIATGGYGRAY 232 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEECCC-CeE--EEEECCcEEEeCCCCcccc
Confidence 9999998763322222233322111 232 6789999999999876543
No 198
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.71 E-value=2.1e-07 Score=90.88 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=82.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc--cCCC-------C-------ce------ee-------
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK--KYSY-------D-------RL------RL------- 56 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~--~~~~-------~-------~l------~~------- 56 (395)
..+||+|||+|.||++||..+++.|.+|+|+||.+..+|.-. ...+ + .. .+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 368999999999999999999999999999999886643110 0000 0 00 00
Q ss_pred ---ccccccccC--CCCCCCC--------------CCC------CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEE
Q 016088 57 ---HLAKQFCQL--PHLPFPS--------------SYP------MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASY 111 (395)
Q Consensus 57 ---~~~~~~~~~--~~~~~~~--------------~~~------~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~ 111 (395)
+.+..+-.+ ...++.. ... .-.+...+.+.+.+.+++.++++ +.++.|+++..
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li~ 172 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeEE
Confidence 000000000 0000100 000 01246778888888888888665 99999999987
Q ss_pred eCCCCcEEEEEee---cCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 112 DEATNMWNVKASN---LLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 112 ~~~~~~~~v~~~~---~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
++++...-+...+ +.. +.. ..+.++.||+|||.++.
T Consensus 173 ~~~g~v~Gv~~~~~~~~~~-~g~--~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHVLGEGSP-DGV--GAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEeccCCCC-CcE--EEEEcCeEEECCCCCCC
Confidence 5422222233321 011 111 57899999999998664
No 199
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.70 E-value=2.1e-07 Score=89.32 Aligned_cols=130 Identities=20% Similarity=0.183 Sum_probs=77.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc-cCCC-------Cc--------ee----eccccc------
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK-KYSY-------DR--------LR----LHLAKQ------ 61 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~-~~~~-------~~--------l~----~~~~~~------ 61 (395)
+||+|||||.||++||..+++.|.+|+|+||.+..+.++. ..-. +. +. ...+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999864332211 0000 00 00 000000
Q ss_pred -------cccCCCCCCC-------CCCCC-----CCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcE-EEE
Q 016088 62 -------FCQLPHLPFP-------SSYPM-----FVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVK 121 (395)
Q Consensus 62 -------~~~~~~~~~~-------~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~v~ 121 (395)
++.-...++. ..++. -.+...+.+.+.+.+++.++++ +. ..++++..++ +.+ .+.
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~-~~v~~l~~~~--g~v~Gv~ 156 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNF--IR-GFAEELAIKN--GKAYGVF 156 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEE--EE-eEeEEEEeeC--CEEEEEE
Confidence 0000001110 00110 1245678888888888888775 54 4788776543 443 233
Q ss_pred EeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 122 ASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 122 ~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
. ++ ..++++.||+|||.++..
T Consensus 157 ~-~g--------~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 157 L-DG--------ELLKFDATVIATGGFSGL 177 (466)
T ss_pred E-CC--------EEEEeCeEEECCCcCcCC
Confidence 3 22 678999999999987654
No 200
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=8.3e-07 Score=87.55 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
..+||+|||+|.||++||..+++.|.+|+|+||....+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 36899999999999999999999999999999975433
No 201
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.69 E-value=3.3e-07 Score=86.29 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||+.|+..|..+.+.|.+|+|+|+.+.+- | ....++.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------p--------~~D~ei~~~ 219 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------P--------GEDPEISKE 219 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------C--------cCCHHHHHH
Confidence 4689999999999999999999999999999988431 0 123588899
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDI 156 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~ 156 (395)
+.+.+++.++.. +.+++++.++..+ +...+.+.++.. ..+++|.+++|+| -+|+...+
T Consensus 220 ~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~------~~~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 220 LTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG------GTIEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC------CEEEeeEEEEccC--CccCCCCC
Confidence 988888866666 9999999998765 336677777532 4889999999999 67877643
No 202
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=4.9e-07 Score=88.57 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=83.7
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC-CCcc--cccCCC-------Cce-------------ee-
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC-YASI--WKKYSY-------DRL-------------RL- 56 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~-~gg~--~~~~~~-------~~l-------------~~- 56 (395)
|......+||+|||+|.||++||..+ +.|.+|+|+||.+. .||. +....+ +.. ..
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 55555578999999999999999999 89999999999764 3431 111000 000 00
Q ss_pred ---------ccccccccC--CCCCCCC-----------C---CC-----CCCCHHHHHHHHHHHHHhcCCcceeeeeeeE
Q 016088 57 ---------HLAKQFCQL--PHLPFPS-----------S---YP-----MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSV 106 (395)
Q Consensus 57 ---------~~~~~~~~~--~~~~~~~-----------~---~~-----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V 106 (395)
+.+..+..+ ...++.. . ++ .-.+...+...+.+.+++.++++ ++++.+
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~v 157 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVMA 157 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeEe
Confidence 000000000 0001100 0 00 01135678888888777777766 999999
Q ss_pred EEeEEeCCCC-cEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 107 ESASYDEATN-MWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 107 ~~i~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+++..++ ++ ..-+...+... ++. ..++++.||+|||.+..
T Consensus 158 ~~Li~~~-~~~v~Gv~~~~~~~-g~~--~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 158 IKLIVDE-NREVIGAIFLDLRN-GEI--FPIYAKATILATGGAGQ 198 (543)
T ss_pred eeeEEeC-CcEEEEEEEEECCC-CcE--EEEEcCcEEECCCCCCC
Confidence 9998754 23 33333322111 122 57999999999997653
No 203
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.68 E-value=2.5e-07 Score=86.65 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +.+ ...++...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l-------------------------------~~~-~~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL-------------------------------ASL-MPPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc-------------------------------chh-CCHHHHHH
Confidence 4689999999999999999999999999999877321 000 11345667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
+.+.+++.++++ ++++.|+++..++ +.+.+.+.++ .++.+|.||+|+| ..|+
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vI~a~G--~~p~ 240 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG--------RSIEVDAVIAAAG--LRPN 240 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC--------cEEECCEEEECcC--CCcc
Confidence 777777888776 8899999998654 5566776654 7899999999999 4554
No 204
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.67 E-value=6.2e-08 Score=92.26 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
..+..+.++|.+.+.+.|++ +...+|+++..++++....|++.++ .++++|++|.|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~---~~~g~V~~v~~~~~g~i~~v~~~~g--------~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE---VIEGTVVDVELDEDGRITAVRLDDG--------RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E---EEET-EEEEEE-TTSEEEEEEETTS--------EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE---EEeCEEEEEEEcCCCCEEEEEECCC--------CEEEEeEEEECCCc
Confidence 56789999999999999988 4455788888876322334566554 89999999999995
No 205
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.66 E-value=2.6e-07 Score=90.68 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=78.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC--CC-cccccC-------------C----CCc---------eee
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC--YA-SIWKKY-------------S----YDR---------LRL 56 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~--~g-g~~~~~-------------~----~~~---------l~~ 56 (395)
..++|+|||||++|+++|..|+++|++|+|+|+.+. .+ |.+... . .+. ...
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 358999999999999999999999999999998751 11 111100 0 000 000
Q ss_pred ----c-cccc-cccCCCCCCC--CCCC--CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecC
Q 016088 57 ----H-LAKQ-FCQLPHLPFP--SSYP--MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL 126 (395)
Q Consensus 57 ----~-~~~~-~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~ 126 (395)
+ .... ...+...... ...+ ...++.++.+.|.+. .+.. .++++++|+++..++ +.+++++.++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 0000 0011110000 0011 124566777776443 2322 247888999998755 6677777664
Q ss_pred CCCceeeEEEEeCEEEEeecCCCC
Q 016088 127 SPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 127 ~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.++++|.||.|.|.+|.
T Consensus 233 -------~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 -------QRYEGDLLVGADGIWSK 249 (668)
T ss_pred -------CEEEcCEEEECCCCCcH
Confidence 67899999999998773
No 206
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.66 E-value=5.6e-07 Score=89.02 Aligned_cols=138 Identities=11% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCc-ccccCC--CC-ceee-ccccccc----------------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS-IWKKYS--YD-RLRL-HLAKQFC---------------- 63 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg-~~~~~~--~~-~l~~-~~~~~~~---------------- 63 (395)
.+||+|||+|.||++||..+++. |.+|+|+||.+..++ .+.... .. .+.. +.+...+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 58999999999999999999998 999999999874322 211110 00 0000 0000000
Q ss_pred ------------cC--CCCCCCCC----------CCCCCCHHHHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcE
Q 016088 64 ------------QL--PHLPFPSS----------YPMFVSRAQFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMW 118 (395)
Q Consensus 64 ------------~~--~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~ 118 (395)
.+ ...++... .........+.+.+.+.+++.+ +.+ +.++.|+++..++ +...
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i--~~~~~v~~Li~~~-g~v~ 167 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNV--LNRVFITDLLVDD-NRIA 167 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEE--EeCCEEEEEEEeC-CEEE
Confidence 00 00001000 0001244566677766666654 666 9999999987654 2222
Q ss_pred EEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 119 NVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
-+...+... ++. ..+.++.||+|||.++.
T Consensus 168 Gv~~~~~~~-g~~--~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 168 GAVGFSVRE-NKF--YVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEEccC-CcE--EEEECCEEEECCCchhh
Confidence 232211111 122 57999999999997664
No 207
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.66 E-value=4.5e-07 Score=87.67 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc--cccCCC-------Cce------------eecccc-----
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKKYSY-------DRL------------RLHLAK----- 60 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~--~~~~~~-------~~l------------~~~~~~----- 60 (395)
.+||+|||+|.||++||..+++.|. |+|+||.+..+|. |..... +.. .+..+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 9999998755441 111000 000 000000
Q ss_pred ------c--cccCCCCCCC--------------CCCC-----CCCCHHHHHHHHHHHHHh-cCCcceeeeeeeEEEeEEe
Q 016088 61 ------Q--FCQLPHLPFP--------------SSYP-----MFVSRAQFIEYLDHYVSH-FNIVPSIRYQRSVESASYD 112 (395)
Q Consensus 61 ------~--~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~~ 112 (395)
. ++.-...++. ...+ ...+...+.+.+.+.+++ .++++ +.++.|+++..+
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~~ 158 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLIE 158 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeecc
Confidence 0 0000000110 0000 012456788888887776 57666 999999999765
Q ss_pred CCCCcE-EEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 113 EATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 113 ~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+ +.. .+...+.. .. ..++++.||+|||.++.
T Consensus 159 ~--g~v~Gv~~~~~~---~~--~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 T--GRVVGVWVWNRE---TV--ETCHADAVVLATGGAGK 190 (488)
T ss_pred C--CEEEEEEEEECC---cE--EEEEcCEEEECCCcccC
Confidence 3 332 24444321 11 57899999999998765
No 208
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.65 E-value=4.3e-07 Score=87.15 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
...+...+.+.+++.++++ +++++|+++..++ ++.|.+.+.+... ++. .++++|+||+|+|.++.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~-g~~--~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRT-GGK--RTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccC-Cce--EEEECCEEEECCCcchH
Confidence 3567777777777778766 9999999998754 2467776543211 111 47999999999998763
No 209
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=8.8e-07 Score=87.35 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
+.||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 4699999999999999999999999999999887554
No 210
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=6.8e-07 Score=87.78 Aligned_cols=136 Identities=13% Similarity=0.109 Sum_probs=80.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc--cccC-----------CCCc--------e-----ee----
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI--WKKY-----------SYDR--------L-----RL---- 56 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~--~~~~-----------~~~~--------l-----~~---- 56 (395)
.+||+|||+|.||++||..+++.|.+|+|+||.+..++. +... .-+. + ..
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 589999999999999999999999999999998654431 1100 0000 0 00
Q ss_pred ------ccccc--cccCCCCCCCC---------C-----CC-----CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEe
Q 016088 57 ------HLAKQ--FCQLPHLPFPS---------S-----YP-----MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESA 109 (395)
Q Consensus 57 ------~~~~~--~~~~~~~~~~~---------~-----~~-----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i 109 (395)
+.+.. +..-...++.. . .+ .-.+...+...+.+.+...++++ +.++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDF--YNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEE--EeCcEEEEE
Confidence 00000 00000011100 0 00 01235667777777776667666 999999999
Q ss_pred EEeCCCCcE-EEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 110 SYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 110 ~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
..++ +.+ -+...+..+ ++. ..+.++.||+|||.+.
T Consensus 163 i~~~--g~v~Gv~~~~~~~-g~~--~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDN--KKVVGIVAMQMKT-LTP--FFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEC--CEEEEEEEEECCC-CeE--EEEEeCeEEECCCccc
Confidence 8754 432 244433211 222 6789999999999766
No 211
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=8e-07 Score=88.28 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
++||+|||+|.||++||..+++.|.+|+|+|+....
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 579999999999999999999999999999986544
No 212
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.64 E-value=1.3e-05 Score=74.47 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
+||+|||+|++|+++|..+.++|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999875
No 213
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=3.2e-07 Score=90.34 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=79.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCc-c-cccCC----CCcee-eccccc----------------
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYAS-I-WKKYS----YDRLR-LHLAKQ---------------- 61 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg-~-~~~~~----~~~l~-~~~~~~---------------- 61 (395)
.+||+|||||.||++||..+++.+ .+|+|+||....++ + +.... ..... .+.+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 579999999999999999999874 79999999875553 1 11100 00000 000000
Q ss_pred ------------cccC--CCCCCCC-------------------CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEE
Q 016088 62 ------------FCQL--PHLPFPS-------------------SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVES 108 (395)
Q Consensus 62 ------------~~~~--~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~ 108 (395)
+-.+ ...++.. ..+.-.++..+...+.+.+++.++++ +.++.|++
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i--~~~t~v~~ 160 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTI--YDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEE--EeCcEEEE
Confidence 0000 0001100 00111245678888888777777766 99999999
Q ss_pred eEEeCCCCcE-EEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 109 ASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 109 i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
+..++ +.. -+...+... ++. ..++++.||+|||.++..
T Consensus 161 L~~~~--g~v~Gv~~~~~~~-g~~--~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 161 LILED--NQAKGVVMYHIAD-GRL--EVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEEEC--CEEEEEEEEEcCC-CeE--EEEECCEEEECCCCCcCC
Confidence 87643 331 122111100 121 578999999999987643
No 214
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=1.6e-06 Score=83.23 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||+.|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHH
Confidence 3689999999999999999999999999999876321 00 12456777
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|++++.+. ..+.+.. ++ +. ..+.+|.||+|+| .+|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g----~~--~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG----SI--QEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC----ce--EEEEeCEEEEecC--CccCCC
Confidence 777778888776 9999999997643 3433332 22 11 5799999999999 667654
No 215
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.61 E-value=9.6e-07 Score=87.11 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=32.5
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987544
No 216
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.61 E-value=6.8e-07 Score=85.43 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL-------------------------------PR--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999877321 00 12456667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|++++.++ +.+.+.. ++ .++.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~-~g--------~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVT-ED--------ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEE-CC--------eEEEcCEEEEeeC--CCCCcc
Confidence 777778888776 8999999998643 4444443 22 6799999999999 667654
No 217
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.60 E-value=2.8e-06 Score=81.88 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=78.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|..|+.+|..|.+.|.+|+++++.+.+. +. ...++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.+++.++++ +.+++|+.+..++ +.+.+.+.... +. .++.+|.||+|+| .+|+...
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~ViiA~G--~~p~~~~ 270 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPG--GQ---GEVEADELLVATG--RRPNTDG 270 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEEeEC--CCcCCCC
Confidence 777777778776 9999999998654 44455554311 11 6799999999999 6676553
No 218
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.60 E-value=2.4e-07 Score=82.98 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=86.4
Q ss_pred CCcCCCCeEEEECCChHHHHHHHHHhhc------CCCeEEEecCCCCCccccc-CC---------CCc------------
Q 016088 2 KEQAAGVEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASIWKK-YS---------YDR------------ 53 (395)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~------~~~v~vie~~~~~gg~~~~-~~---------~~~------------ 53 (395)
......+||+|||||||||++|.+|++. .++|+|+|+...+||.... .. .+.
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~v 150 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPV 150 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccc
Confidence 3334579999999999999999999863 4699999999998873211 10 010
Q ss_pred ----eeeccccccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeec---
Q 016088 54 ----LRLHLAKQFCQLPHL-PFPSSYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNL--- 125 (395)
Q Consensus 54 ----l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~--- 125 (395)
+.....+.-+.++-. +...+-....+-.++..++-+.++.+++++ +-...+..+-.++++..--|.+.|-
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeecccccc
Confidence 111111111111111 111111123456799999999999999987 6666666666666444434444331
Q ss_pred ---CCCCce-eeEEEEeCEEEEeecCC
Q 016088 126 ---LSPGRV-IEEYYSGRFLVVASGET 148 (395)
Q Consensus 126 ---~~~~~~-~~~~~~~d~vVlAtG~~ 148 (395)
...... .--.++++.-|.|-|+.
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 110000 00368899999999975
No 219
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.59 E-value=7.8e-07 Score=84.50 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
++||+|||+|.||++||..+. .|.+|+|+||.+..++
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 589999999999999999984 7999999999886665
No 220
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=2.1e-06 Score=82.76 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 11 12456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEe--ecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS--NLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|+++..+. +.+.+.+. ++ +. ..+.+|.||+|+| .+|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g----~~--~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG----KA--QELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC----Ce--EEEEeCEEEECcC--cccCCC
Confidence 777778888777 9999999998644 44555544 32 21 5799999999999 566654
No 221
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.58 E-value=2.8e-07 Score=84.64 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCC
Q 016088 81 AQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 81 ~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
..+.+.+-+.+.+. ++.+ +++++|+++.+.. ++.|.|.+.+..+ ++. ..+++++|++..|..+.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~--~~~~eV~~i~r~~-dg~W~v~~~~~~~-~~~--~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFEL--HLNHEVTDIKRNG-DGRWEVKVKDLKT-GEK--REVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCcEE--EecCEeCeeEECC-CCCEEEEEEecCC-CCe--EEEECCEEEECCchHhHH
Confidence 35555555555555 6565 9999999999976 5779999876433 222 899999999999986644
No 222
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.58 E-value=1e-06 Score=86.47 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=39.8
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
|.+...++||+|||+|++|+++|..++++|.+|+||||.+..||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 56666689999999999999999999999999999999887665
No 223
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.58 E-value=8.4e-07 Score=87.37 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg 44 (395)
.+||+|||+|.||++||..+++. +.+|+|+||....++
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 58999999999999999999987 479999999876554
No 224
>PLN02815 L-aspartate oxidase
Probab=98.58 E-value=1e-06 Score=86.47 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.+||+|||+|.||++||..+++.| +|+|+||.+..+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 579999999999999999999999 9999999886655
No 225
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=1.2e-06 Score=84.33 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=79.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999877321 00 12466677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.+++.++.+ +.+++|++++.++ +.+.+.+.++. +. ..+.+|.||+|+| .+|+...
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg---~~--~~i~~D~vi~a~G--~~p~~~~ 276 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG---KE--ETLEADYVLVAVG--RRPNTEN 276 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC---ee--EEEEeCEEEEeeC--CccCCCC
Confidence 777777888776 9999999998765 45556655431 21 5789999999999 5666543
No 226
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.57 E-value=6.5e-07 Score=86.06 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcC-CcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 82 QFIEYLDHYVSHFN-IVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 82 ~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
.+.+.+.+.+++.+ +.+ +++++|+++..++ ++.|.+.+.+... ++. ..++|++||+|+|.++.
T Consensus 184 ~l~~aL~~~a~~~Ggv~i--~~~teV~~I~~~~-dg~~~v~~~~~~~-G~~--~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFEL--QLGHEVRDIKRND-DGSWTVTVKDLKT-GEK--RTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHhCCCeEE--EeCCEEEEEEECC-CCCEEEEEEEcCC-Cce--EEEEcCEEEECCCcchH
Confidence 55666666666665 555 9999999998754 3458777654211 111 36999999999998873
No 227
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=7e-07 Score=88.08 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC---CCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS---IPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~---~~v~vie~~~~~gg 44 (395)
++||+|||+|.||++||..+++.| .+|+|+||.+..++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 589999999999999999999998 89999999876554
No 228
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.56 E-value=1.1e-06 Score=84.69 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=78.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + ....++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------------------S--FLDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------C--cCCHHHHHH
Confidence 4689999999999999999999999999999877321 0 012456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|+++...+ +.+.+.+.++ ..+.+|.||+|+| .+|+..
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG--------KKIKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC--------CEEEeCEEEEeec--CCcccc
Confidence 777777778776 9999999998754 4555665443 6789999999999 566644
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.56 E-value=6.1e-07 Score=84.50 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+... ....++.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987732110 012355667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
+.+.+++.++++ +.+++|+++.. + +.+.+.+.++ ..+.+|.||+|+| ..|+.
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g--------~~i~aD~Vv~a~G--~~pn~ 243 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG--------ETLQADVVIYGIG--ISAND 243 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC--------CEEECCEEEECCC--CChhh
Confidence 777777778776 99999999875 2 3455666554 6799999999999 55653
No 230
>PRK12839 hypothetical protein; Provisional
Probab=98.56 E-value=2.9e-06 Score=83.34 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=38.8
Q ss_pred CCC-cCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 1 MKE-QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 1 m~~-~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
|++ ...++||+|||+|.+|+++|..+++.|.+|+|+|+...+||.
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 553 234789999999999999999999999999999998877764
No 231
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.56 E-value=1.7e-06 Score=85.91 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=34.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
.+||+|||+|.||++||..+++.|.+|+|+||.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5899999999999999999999999999999987554
No 232
>PRK06116 glutathione reductase; Validated
Probab=98.55 E-value=1.2e-06 Score=84.15 Aligned_cols=102 Identities=17% Similarity=0.081 Sum_probs=78.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------~--~~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-------------------------------R--GFDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|.+++.++ ++.+.+.+.++ .++.+|.||+|+| .+|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~-~g~~~v~~~~g--------~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNA-DGSLTLTLEDG--------ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcC-CceEEEEEcCC--------cEEEeCEEEEeeC--CCcCCC
Confidence 777778888776 9999999998754 23456666554 6789999999999 566654
No 233
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.54 E-value=5.9e-07 Score=82.60 Aligned_cols=101 Identities=20% Similarity=0.339 Sum_probs=78.7
Q ss_pred CeEEEECCChHHHHHHHHHhhc-------------CCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~-------------~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 74 (395)
..++|+|||+.|+..|..|..+ ..+|+++|+.+.+. +
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p-------- 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------P-------- 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------c--------
Confidence 4799999999999999999753 13899999988432 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 75 PMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
....++.++.++..++.++++ +.++.|++++.+. |++.+++ ..+.|+.+|+|+|....|..-
T Consensus 206 ---~~~~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~-------~~I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 206 ---MFPPKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE-------EEIPADTVVWAAGVRASPLLK 267 (405)
T ss_pred ---CCCHHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC-------eeEecCEEEEcCCCcCChhhh
Confidence 123578889999999999888 9999999999755 7777651 369999999999965555444
Q ss_pred CC
Q 016088 155 DI 156 (395)
Q Consensus 155 ~~ 156 (395)
.+
T Consensus 268 ~l 269 (405)
T COG1252 268 DL 269 (405)
T ss_pred hc
Confidence 43
No 234
>PTZ00367 squalene epoxidase; Provisional
Probab=98.54 E-value=9e-07 Score=86.26 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
.++||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 36899999999999999999999999999999875
No 235
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=3.1e-06 Score=83.57 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.+||+|||+|.||++||..+++. .+|+|+||.+..++
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 58999999999999999999986 89999999865443
No 236
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=2.8e-06 Score=83.69 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=36.2
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.++||+|||+|.+|+++|..+++.|.+|+|+||.+..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 368999999999999999999999999999999987766
No 237
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.53 E-value=1.4e-06 Score=85.68 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~gg 44 (395)
.+||+|||+|.||++||..+++. +.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 57999999999999999999987 579999999876554
No 238
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.53 E-value=1.5e-06 Score=85.68 Aligned_cols=39 Identities=26% Similarity=0.539 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.++||+|||+|++|+++|..++++|.+|+|+||.+..||
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 378999999999999999999999999999999987765
No 239
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.53 E-value=9.8e-07 Score=84.51 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=36.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCCCCccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIW 46 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~~gg~~ 46 (395)
..+++|||||.+||++|..|.+. |.+|+|+|+.+.+||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 57999999999999999999985 67999999999998854
No 240
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.52 E-value=1.1e-06 Score=83.60 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~ 41 (395)
||+|||||.+|+++|.+|+++|.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999753
No 241
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=6.3e-06 Score=79.55 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12456667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|++++.++ +...+...++. ++. ..+.+|.||+|+| ..|+..
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~--g~~--~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDAD--GEA--QTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCC--Cce--eEEEcCEEEEccC--CccCCC
Confidence 777777778776 9999999998754 44455544421 121 5799999999999 677755
No 242
>PRK06370 mercuric reductase; Validated
Probab=98.50 E-value=2.4e-06 Score=82.31 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=77.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------------------PR--EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999877321 00 12356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|.+++..+ +...+...... +. ..+.+|.||+|+| .+|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~--~~---~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNG--GA---PEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCC--Cc---eEEEeCEEEECcC--CCcCCC
Confidence 777777888776 9999999998754 33444443211 11 6799999999999 667654
No 243
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.50 E-value=5.7e-06 Score=80.49 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=38.1
Q ss_pred CCCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 1 MKEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
|......+||+|||+| +|+++|..+++.|.+|+|+||.+..||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5666568999999999 999999999999999999999886554
No 244
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.49 E-value=2e-06 Score=82.30 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=77.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 00 12456667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|+++...+ +.+.+.+.++ ..+.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~viva~G--~~pn~~ 266 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG--------EEIVADVVLFATG--RSPNTK 266 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------cEeecCEEEEeeC--CCcCCC
Confidence 777777888776 9999999998654 3455665443 6799999999999 566643
No 245
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.48 E-value=9.6e-07 Score=83.06 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
++||+|||||++|+++|..|+++|.+|+++|+....+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 6899999999999999999999999999999877443
No 246
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.48 E-value=2.9e-06 Score=83.87 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=30.6
Q ss_pred EEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
|+|||+|.||++||..+++.|.+|+|+||.+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998733
No 247
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.48 E-value=1.3e-06 Score=85.30 Aligned_cols=38 Identities=26% Similarity=0.575 Sum_probs=33.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
..+||+|||+|.||++||..+. .|.+|+|+||.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 4689999999999999999996 4999999999886655
No 248
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.46 E-value=7e-06 Score=79.08 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ....++.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~--~~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL-------------------------------P--LEDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC-------------------------------c--chhHHHHHH
Confidence 4689999999999999999999999999999877321 0 012456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.+++. +++ +.+++|.+++.++. ....++..++.. ..+.+|.||+|+| .+|+...
T Consensus 216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~~~------~~i~~D~vi~a~G--~~p~~~~ 272 (460)
T PRK06292 216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGGKT------ETIEADYVLVATG--RRPNTDG 272 (460)
T ss_pred HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCCce------EEEEeCEEEEccC--CccCCCC
Confidence 77777666 665 99999999976542 233343323321 6799999999999 6777653
No 249
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.45 E-value=8.4e-06 Score=79.87 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
.++||+|||+| +|+++|..+++.|.+|+|+||.+.+||+
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 47899999999 8999999999999999999999888873
No 250
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.45 E-value=8.3e-06 Score=80.50 Aligned_cols=39 Identities=18% Similarity=0.574 Sum_probs=36.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
..+||+|||+|.+|+++|..+.++|.+|+|||+.+..||
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 468999999999999999999999999999999887666
No 251
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.45 E-value=3.9e-06 Score=83.66 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
.+||+|||||.||++||..+++.|.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 6899999999999999999999999999999876543
No 252
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.45 E-value=3.6e-06 Score=80.59 Aligned_cols=103 Identities=16% Similarity=0.033 Sum_probs=78.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876321 00 12356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.++.|+++..+. .+...+++.++ + ..+.+|.||+|+| .+|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g----~---~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDG----K---SIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCC----c---EEEEcCEEEEeeC--CCcCcc
Confidence 777777778776 9999999998653 23355655442 1 5799999999999 566654
No 253
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=2.7e-07 Score=88.90 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=43.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeec
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLH 57 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~ 57 (395)
.+||||||||+.||+||..|+++|++|+|+||+...||..+...+.+.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd 53 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFD 53 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEec
Confidence 589999999999999999999999999999999999996665444444443
No 254
>PLN02507 glutathione reductase
Probab=98.45 E-value=3.6e-06 Score=81.51 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=77.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..+.+.|.+|+|+++.+.+. +. ...++.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHH
Confidence 3689999999999999999999999999999876210 00 12466777
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+++|.++...+ +...+.+.++ .++.+|.|++|+| .+|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG--------EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC--------cEEEcCEEEEeec--CCCCCC
Confidence 777778888776 9999999998654 4455655433 6799999999999 566654
No 255
>PRK14727 putative mercuric reductase; Provisional
Probab=98.44 E-value=3.5e-06 Score=81.33 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=75.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+..|..|.+.|.+|+++++...+ + ....++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHH
Confidence 368999999999999999999999999999864311 0 112456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|+++..++ +.+.+...+ ..+.+|.||+|+| ..|+..
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~---------g~i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH---------GELRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC---------CeEEeCEEEEccC--CCCCcc
Confidence 777788888776 8899999998654 455555433 5688999999999 555543
No 256
>PRK14694 putative mercuric reductase; Provisional
Probab=98.44 E-value=3.1e-06 Score=81.51 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=74.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~--~~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------S--QEDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------C--CCCHHHHHH
Confidence 368999999999999999999999999999864311 0 012456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.|.+++.++ +.+.+.+.+ ..+.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA---------GTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC---------CEEEeCEEEEccC--CCCCcC
Confidence 777788888777 8999999997654 444454432 5699999999999 566654
No 257
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.44 E-value=5.6e-06 Score=87.87 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=36.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
.++||+|||+|.||++||..+++.|.+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 3589999999999999999999999999999999887763
No 258
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=3.8e-06 Score=80.79 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..+.+.|.+|+++|+.+.+. +. ...++.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~ 220 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKT 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHH
Confidence 4689999999999999999999999999999876321 11 11356667
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.|+++..++ +.+.+......+ ++. ..+.+|.||+|+| .+|+..
T Consensus 221 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~-g~~--~~i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 221 LQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAG-GAA--ETLQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCC-Cce--eEEEeCEEEEccC--Cccccc
Confidence 777777778776 9999999998654 344444432110 111 6799999999999 566643
No 259
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.44 E-value=5.6e-06 Score=80.94 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
..+||+|||+|.||++||..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 368999999999999999999886 89999999886555
No 260
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.43 E-value=2.5e-06 Score=81.79 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=75.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ....++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL-------------------------------PD-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC-------------------------------ch-hcCHHHHHH
Confidence 4689999999999999999999999999999766321 00 012567788
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
+.+.+++.++++ +.+++|+++..++ +.+.+.+.+ ..+.||.+|+|+| ..|+.
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~d~vi~a~G--~~p~~ 248 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK---------GEYEADVVIVATG--VKPNT 248 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC---------CEEEcCEEEECcC--CCcCH
Confidence 888888888776 9999999996432 333344332 5689999999999 45553
No 261
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=3.3e-06 Score=81.20 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=77.4
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
.+++|||+|..|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-------------------------------PG--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC-------------------------------CC--CCHHHHHHH
Confidence 589999999999999999999999999999876321 11 123566777
Q ss_pred HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
.+.+++.++.+ +.+++|++++.++ +.+.+.+.++ ..+.+|.||+|+| .+|+..
T Consensus 225 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 225 EEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG--------RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC--------cEEEecEEEEeec--CCcCCC
Confidence 77788888776 8999999997654 4455665443 6789999999999 566654
No 262
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.43 E-value=3.6e-06 Score=81.69 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.+||+|||+|.||++||..+++ |.+|+|+||.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 5799999999999999999976 899999999886554
No 263
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.43 E-value=1.9e-06 Score=77.79 Aligned_cols=35 Identities=43% Similarity=0.526 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
.+|+|||||.+|+++|+.|.++|++|+|+|+...+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 47999999999999999999999999999986644
No 264
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.42 E-value=6.4e-06 Score=73.33 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=109.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..||..+..-.+.|-+||++|-.+.+++. -..++...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------mD~Eisk~ 257 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------MDGEISKA 257 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999988866542 11378888
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCCccccccCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRGLSSFCSSA 166 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g~~~~~~~~ 166 (395)
++..+.+.++.+ +.+++|+.++.+.+ +...|...+..+ ++. ..++||.+++|+| -+|....+ |++..---.
T Consensus 258 ~qr~L~kQgikF--~l~tkv~~a~~~~d-g~v~i~ve~ak~-~k~--~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~ 328 (506)
T KOG1335|consen 258 FQRVLQKQGIKF--KLGTKVTSATRNGD-GPVEIEVENAKT-GKK--ETLECDVLLVSIG--RRPFTEGL-GLEKIGIEL 328 (506)
T ss_pred HHHHHHhcCcee--EeccEEEEeeccCC-CceEEEEEecCC-Cce--eEEEeeEEEEEcc--CcccccCC-Chhhccccc
Confidence 888888889887 99999999999874 466677766543 233 8899999999999 56765442 222210000
Q ss_pred CCCcceeecccCCCCCCCCCCeEEEEcCCCCHHHHHHHHHhhcC
Q 016088 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (395)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~~a~e~a~~l~~~g~ 210 (395)
...+++....++. ..=.++-.||.-..|--+|...-+.|-
T Consensus 329 D~r~rv~v~~~f~----t~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 329 DKRGRVIVNTRFQ----TKVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred ccccceecccccc----ccCCceEEecccCCcchhhhhhhhhch
Confidence 0122222222111 113457788887777777776666554
No 265
>PRK07846 mycothione reductase; Reviewed
Probab=98.41 E-value=8.5e-06 Score=77.98 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=73.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 00 11345555
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.. +.++.+ +.+++|++++.++ +...+.+.++ ..+.+|.||+|+| .+|+...
T Consensus 213 l~~l~-~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 213 FTELA-SKRWDV--RLGRNVVGVSQDG--SGVTLRLDDG--------STVEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHHH-hcCeEE--EeCCEEEEEEEcC--CEEEEEECCC--------cEeecCEEEEEEC--CccCccc
Confidence 55443 345554 8999999998654 4455655443 6799999999999 5666543
No 266
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.41 E-value=1.2e-05 Score=79.00 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
.++||+|||+|.+|+++|..+++.|.+|+|||+.+..||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3689999999999999999999999999999998776663
No 267
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=4.5e-06 Score=79.85 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=76.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHH
Confidence 3589999999999999999999999999999876321 11 12456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.|.+++.++ +.+.+...+ ..+.+|.||+|+| ..|+..
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~---------g~i~~D~vl~a~G--~~pn~~ 257 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH---------AQLAVDALLIASG--RQPATA 257 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC---------CeEEeCEEEEeec--CCcCCC
Confidence 777788888877 8999999998654 445554432 4588999999999 566543
No 268
>PRK13748 putative mercuric reductase; Provisional
Probab=98.39 E-value=4e-06 Score=82.85 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=75.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ +. ...++.+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHH
Confidence 468999999999999999999999999999874311 00 12456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.|+++..++ +.+.+.+.+ ..+.+|.||+|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH---------GELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC---------CeEEeCEEEEccC--CCcCCC
Confidence 777788888777 9999999998654 455554432 5689999999999 566654
No 269
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.39 E-value=3.6e-06 Score=80.25 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=74.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. + ....++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHH
Confidence 46899999999999999999999999999998763200 0 011456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ ++++.|.+++.++ .. +...++ ..+.+|.||+|+| .+|+..
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~---~~-v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 236 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE---RV-KVFTSG--------GVYQADMVILATG--IKPNSE 236 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC---CE-EEEcCC--------CEEEeCEEEECCC--ccCCHH
Confidence 777788888876 9999999997533 22 344443 6799999999999 566543
No 270
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=78.40 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh------------hHHHHHHHhhcCC--hhhHHHHHHHHH
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE------------MVYLGLVLLRYVP--CGGVDTLMVMLS 251 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~------------~~~~~~~~~~~~~--~~~~~~~~~~~~ 251 (395)
...|+|||+|+.|+-+|..+++.|.+|.++++.+. +.-.. .....+++.++-. .-....+...-+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35799999999999999999999999999998761 11000 0011112221110 111111110000
Q ss_pred HHHhcchhhcCCCCCC--CCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe----EEecCCcEEeCcEE
Q 016088 252 RLVYGDLSKYGIHKPR--EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIFENGHSHHFDSI 323 (395)
Q Consensus 252 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~----v~~~~g~~~~~D~v 323 (395)
+.+..=.+.+++.-.+ .+.++- ...+...+-+.+...+++.+|+++++ |..++.+. +.+.+|+++.||.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp--~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFP--DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecC--CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 0000001122221111 111110 00112334456677888999999998 88887773 66678889999999
Q ss_pred EEccCCCCC
Q 016088 324 VFCTGFKRS 332 (395)
Q Consensus 324 i~atG~~~~ 332 (395)
|+|||-...
T Consensus 160 ilAtGG~S~ 168 (408)
T COG2081 160 ILATGGKSW 168 (408)
T ss_pred EEecCCcCC
Confidence 999995533
No 271
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.38 E-value=1.2e-05 Score=77.09 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..|.+.|.+|++|++.+.+. +. ...++...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------------------------------RH--LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------------------------------cc--cCHHHHHH
Confidence 4689999999999999999999999999999876321 00 11344455
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+..+ .++.+ +.+++|++++.++ +.+.+.+.++ ..+.+|.|++|+| .+|+..
T Consensus 216 l~~~~~-~gI~i--~~~~~V~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKWDI--RLGRNVTAVEQDG--DGVTLTLDDG--------STVTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCCEE--EeCCEEEEEEEcC--CeEEEEEcCC--------CEEEcCEEEEeec--cCcCCC
Confidence 554433 35555 8999999998654 4455665443 6799999999999 566654
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.1e-06 Score=81.87 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=76.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC----------CCCcccccCCC------Cceee-ccccccccCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN----------CYASIWKKYSY------DRLRL-HLAKQFCQLPHLP 69 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~----------~~gg~~~~~~~------~~l~~-~~~~~~~~~~~~~ 69 (395)
.|||+|||||.||+.||.+.+|.|.+++++--.. .+||.-..... .+++- ........+..+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 5999999999999999999999999999987543 22322111000 00000 0000000111111
Q ss_pred CCCCCCC-----CCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEE
Q 016088 70 FPSSYPM-----FVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVV 143 (395)
Q Consensus 70 ~~~~~~~-----~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVl 143 (395)
....... -..+..+..++++.++.. ++. .++..|+++..++......|.+.++ ..+.|+.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEE
Confidence 1111111 123345556666666554 444 6788888887755223466777776 8999999999
Q ss_pred eecCC
Q 016088 144 ASGET 148 (395)
Q Consensus 144 AtG~~ 148 (395)
+||.+
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99964
No 273
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=6.2e-06 Score=79.41 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=75.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHH
Confidence 3689999999999999999999999999999877321 10 12355666
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++. +.+ +.++.|++++..+ +...+...++. ++. .++.+|.||+|+| .+|+..
T Consensus 221 ~~~~l~~~-v~i--~~~~~v~~i~~~~--~~~~v~~~~~~--~~~--~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FNI--MLETKVTAVEAKE--DGIYVTMEGKK--APA--EPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eEE--EcCCEEEEEEEcC--CEEEEEEEeCC--Ccc--eEEEeCEEEEeec--ccccCC
Confidence 66666555 555 8999999998654 44555554421 111 5799999999999 677654
No 274
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.38 E-value=2.7e-06 Score=81.19 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=74.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..|+.+|..|.+.|.+|+++++.+.+.. ....++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHH
Confidence 36899999999999999999999999999998763210 012356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++.+ +.+++|++++. . .+++.++ ..+.+|.|++|+| .+|+..
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g--------~~~~~D~vl~a~G--~~pn~~ 244 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG--------KVEHYDMIIEGVG--THPNSK 244 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC--------CEEEeCEEEECcC--CCcChH
Confidence 777777888776 99999998863 2 2555543 6789999999999 566543
No 275
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.38 E-value=1.7e-06 Score=76.89 Aligned_cols=134 Identities=24% Similarity=0.193 Sum_probs=78.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC-----------CCCccccc---C------------------CCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN-----------CYASIWKK---Y------------------SYDR 53 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~-----------~~gg~~~~---~------------------~~~~ 53 (395)
...||+|||||.+|.+.|..|++.|.+|.||||.- +.||.... . -+++
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g 123 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG 123 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence 35899999999999999999999999999999753 23331110 0 0111
Q ss_pred eeeccccccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCce
Q 016088 54 LRLHLAKQFCQLPHLPFPSSYP-MFVSRAQFIEYLDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRV 131 (395)
Q Consensus 54 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~ 131 (395)
-....| +|..+++.... .-.+...+.+.+++.+... ++. ..+..|.++-.++ +-.--|++.+..+ ++
T Consensus 124 k~v~~p-----yP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~---~eeGtV~sLlee~-gvvkGV~yk~k~g--ee 192 (509)
T KOG1298|consen 124 KEVDLP-----YPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVR---LEEGTVKSLLEEE-GVVKGVTYKNKEG--EE 192 (509)
T ss_pred ceeecc-----CCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeE---EeeeeHHHHHhcc-CeEEeEEEecCCC--ce
Confidence 111111 12122221111 1123346677777666554 433 5566666665544 1222345555432 22
Q ss_pred eeEEEEeCEEEEeecCCCCCC
Q 016088 132 IEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 132 ~~~~~~~d~vVlAtG~~~~p~ 152 (395)
.+..|..-|+|.|++|+-+
T Consensus 193 --~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 193 --VEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred --EEEecceEEEecchhHHHH
Confidence 7889999999999998544
No 276
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.37 E-value=8.3e-06 Score=78.67 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=75.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
.+++|||||+.|+.+|..|++.|.+|+++++.. +. + ....++.+.+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------R--GFDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------c--ccCHHHHHHH
Confidence 579999999999999999999999999998632 10 0 0124667777
Q ss_pred HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
.+.+++.++++ +.++.++.+...+ +...++..++.. . .++.+|.||+|+| ..|+..
T Consensus 227 ~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~--~---~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 227 GEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN--G---IEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc--c---eEEEeCEEEEEec--CCcCCC
Confidence 88888888777 8999888887654 344455544310 1 5799999999999 566654
No 277
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.36 E-value=1.4e-06 Score=88.65 Aligned_cols=119 Identities=15% Similarity=0.284 Sum_probs=72.0
Q ss_pred CeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCC---C-c-ccccCCCCceeeccc-------cccc-------cCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCY---A-S-IWKKYSYDRLRLHLA-------KQFC-------QLP 66 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~---g-g-~~~~~~~~~l~~~~~-------~~~~-------~~~ 66 (395)
.+|+|||||++|+++|..|++. |++|+|+|+.+.. | | ....+....+....+ .... ...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 3799999999999999999998 8999999998753 2 1 111110000000000 0000 000
Q ss_pred CCCC-CCCCC-CCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEe
Q 016088 67 HLPF-PSSYP-MFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVA 144 (395)
Q Consensus 67 ~~~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlA 144 (395)
.... ..... ....+.++.+.|.+.+.+.++++ +++++|+++.. ...++|.||.|
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~----------------------~~~~~D~VVgA 136 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA----------------------LAADADLVIAS 136 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh----------------------hhcCCCEEEEc
Confidence 0000 00000 12578899999999998888766 88888755421 22467899999
Q ss_pred ecCCCC
Q 016088 145 SGETSN 150 (395)
Q Consensus 145 tG~~~~ 150 (395)
+|..|.
T Consensus 137 DG~~S~ 142 (765)
T PRK08255 137 DGLNSR 142 (765)
T ss_pred CCCCHH
Confidence 997663
No 278
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=1.7e-05 Score=78.34 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=36.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
++||+|||+|.+|+++|..++++|.+|+|+|+.+..||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5899999999999999999999999999999988777643
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.35 E-value=3.7e-06 Score=85.89 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=77.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..|+.+|..|.+.|.+|+|++..+.+- + .....+..+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------------------------~-~~ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------------------------A-EQLDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------------------------h-hhcCHHHHHH
Confidence 3589999999999999999999999999999876321 0 0012355677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
+.+.+++.++++ +.++.++++..+.......+.+.++ ..+.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG--------~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG--------SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC--------CEEEcCEEEECCC--cccCc
Confidence 777788888877 9999999997543223444566554 6799999999999 56664
No 280
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.35 E-value=1.9e-05 Score=76.13 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=75.7
Q ss_pred CCeEEEECCChHHHHHHHHHhh---cCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~---~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (395)
..+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ...++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHH
Confidence 4689999999999999976654 489999999877321 10 12467
Q ss_pred HHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 84 IEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
.+.+.+.+++.++.+ +.++.|+++...+ .+...+.+.++ ..+.+|.||+|+| .+|+..
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~-~~~~~v~~~~g--------~~i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNA-DGSKHVTFESG--------KTLDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcC-CceEEEEEcCC--------CEEEcCEEEEeeC--CCcCcc
Confidence 778888888888776 9999999998653 23344555443 6799999999999 566654
No 281
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.35 E-value=7.2e-06 Score=79.45 Aligned_cols=100 Identities=18% Similarity=0.027 Sum_probs=74.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||+|+.|+.+|..|.+.|.+|+++++...+ +. ...++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l--------------------------------~~--~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL--------------------------------RG--FDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc--------------------------------cc--CCHHHHHH
Confidence 358999999999999999999999999999863210 00 12356677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.+.++...+ +...+.+.++ ..+.+|.||+|+| .+|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG--------TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC--------CEEEcCEEEEeeC--CCCCcc
Confidence 777778888776 8999998887654 3445555443 5678999999999 566654
No 282
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.31 E-value=6.3e-06 Score=71.67 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=82.7
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc---C-------CCCceee----------------------
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK---Y-------SYDRLRL---------------------- 56 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~---~-------~~~~l~~---------------------- 56 (395)
.|+|||+|.|||+++..+...+-.|+++|+...+||.--. . ....+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 5999999999999999999987779999999988873211 0 0000000
Q ss_pred -------ccccccc--------------cCCCCCCC---CCCCCCCCHHHHHHHHHHHHHhc----CCcceeeeeeeEEE
Q 016088 57 -------HLAKQFC--------------QLPHLPFP---SSYPMFVSRAQFIEYLDHYVSHF----NIVPSIRYQRSVES 108 (395)
Q Consensus 57 -------~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~V~~ 108 (395)
+++...- .+.....| ......++..++...+....++. .-.++|..+++|++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 0000000 00000000 11123455666666665544443 32346689999999
Q ss_pred eEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 109 ASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 109 i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
|.++. +..+-|..-+..+ +. ..+.++.||+|||.++.
T Consensus 171 il~n~-gkVsgVeymd~sg--ek--~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNN-GKVSGVEYMDASG--EK--SKIIGDAVVLATGGFGY 207 (477)
T ss_pred eecCC-CeEEEEEEEcCCC--Cc--cceecCceEEecCCcCc
Confidence 99654 3445566555432 32 67899999999998774
No 283
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.31 E-value=7.8e-06 Score=79.35 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=36.2
Q ss_pred cCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
....+||+|||||.||+.||..+++.|.+|+|+||.+..+|
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 34578999999999999999999999999999999875543
No 284
>PRK07208 hypothetical protein; Provisional
Probab=98.29 E-value=1.3e-06 Score=84.54 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=39.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~ 49 (395)
.+||+|||||++||++|..|+++|++|+|+|+.+.+||.+...
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~ 46 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTV 46 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeee
Confidence 5689999999999999999999999999999999999976553
No 285
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.29 E-value=2.3e-06 Score=77.42 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=66.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPR 267 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (395)
+++|||+|++|+.+|..|++.|.+|+++.+.+.. ........+..+ |. +..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~g----g~~~~~~~~~~~-~~----------------------~~~-- 52 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPG----GQLTTTTEVENY-PG----------------------FPE-- 52 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC----cceeeccccccc-CC----------------------CCC--
Confidence 5899999999999999999999999999986510 000000000000 00 000
Q ss_pred CCcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCC----eEEecCCcEEeCcEEEEccCCCCCcc
Q 016088 268 EGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRSTN 334 (395)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~~~ 334 (395)
......+...+.+.+++.+++++.. +..++.. .+.+++|..+.+|.||+|||..|+.+
T Consensus 53 ---------~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 53 ---------GISGPELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred ---------CCChHHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 0000111222344455556776666 6666654 36667788899999999999988754
No 286
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=9.8e-07 Score=84.30 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=37.6
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
..++|||||||+|||+||+.|...|++|+|+|.++++||.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 3579999999999999999999999999999999999984
No 287
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.28 E-value=5.6e-06 Score=84.45 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=76.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..|+.+|..|.+.|.+|+|+++.+.+. +. .........
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------------------------~~-~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------------------------AK-QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------------------------hh-hcCHHHHHH
Confidence 4689999999999999999999999999999876321 00 011345566
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.++++..+. ....|.+.++ ..+.+|.||+|+| .+|+..
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG--------~~i~~D~Vi~a~G--~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG--------SSLEADLIVMAAG--IRPNDE 241 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC--------CEEEcCEEEECCC--CCcCcH
Confidence 677777888877 9999998887533 3344666654 6799999999999 566543
No 288
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.28 E-value=1.7e-05 Score=77.85 Aligned_cols=38 Identities=37% Similarity=0.534 Sum_probs=35.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC--CCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~--~~gg 44 (395)
++||+|||+|.+|++||..+++.|.+|+|+||.+ ..||
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 6899999999999999999999999999999988 5565
No 289
>PTZ00058 glutathione reductase; Provisional
Probab=98.27 E-value=1.3e-05 Score=78.31 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|..|+.+|..+.+.|.+|+++++.+.+. +. ...++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK--FDETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc--CCHHHHHH
Confidence 4689999999999999999999999999999876321 10 12456677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.+..|.++..++ .+...+...++ . ..+.+|.|++|+| .+|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~-~~~v~v~~~~~----~---~~i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVK-EKNLTIYLSDG----R---KYEHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecC-CCcEEEEECCC----C---EEEECCEEEECcC--CCCCcc
Confidence 777777878776 9999999998654 23344443322 1 6799999999999 566644
No 290
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.27 E-value=9.1e-06 Score=77.54 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcE-EEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 80 RAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
...+.+.+.+.+++.++++ +++++|+++..+++.+.. .+...+ .. ..++++.||+|||.+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~-~~------~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTV-GT------HRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcC-Cc------EEEEcCEEEEcCCCcc
Confidence 4567888888888888777 999999999875312332 233322 11 6789999999999654
No 291
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.25 E-value=6.2e-06 Score=81.16 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHh----hcCCCeEEEecCCC
Q 016088 9 EVIIVGAGPSGLATAACLS----LQSIPYVILERENC 41 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~----~~~~~v~vie~~~~ 41 (395)
||+|||||.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 292
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.25 E-value=1.2e-05 Score=78.08 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~ 41 (395)
.++||+|||+|.||++||..++ +.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 569999999875
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.25 E-value=1.1e-05 Score=76.44 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=78.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
.+++|||+|+.|+.+|..|+++|.+|+++|+.+.+++. +.. .++.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------------------~~~-~~~~~~~ 184 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------------------LLD-PEVAEEL 184 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------------------hhh-HHHHHHH
Confidence 68999999999999999999999999999998865421 000 5778888
Q ss_pred HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEE-EEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
.+..++++++. +.++.++.++...+..... +...++ ..+.+|.+++++| .+|+
T Consensus 185 ~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 185 AELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG--------EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC--------cEEEeeEEEEeec--cccc
Confidence 88888888766 8999999998765211111 233332 7899999999999 5664
No 294
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.22 E-value=1.7e-06 Score=83.12 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=38.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCcccccCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKYSY 51 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg~~~~~~~ 51 (395)
.+|+|||||++||+||..|++.| ++|+|+|+++.+||..+....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~ 46 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK 46 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence 37999999999999999999987 899999999999997665433
No 295
>PRK10262 thioredoxin reductase; Provisional
Probab=98.21 E-value=2.3e-05 Score=71.74 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||+|..|+.+|..|.+.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999876210 11234455
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.++++..++ .+.-.|++.++...++. .++.+|.||+|+| ..|+..
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~--~~i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNI--ESLDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCCeE--EEEECCEEEEEeC--CccChh
Confidence 666666777766 8899999997543 12223444432110121 5799999999999 566543
No 296
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.20 E-value=2.1e-05 Score=77.92 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=75.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||..|+.+|..+.+.|.+|+++++.+.+. + ....++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-------------------------------~--~~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-------------------------------P--LLDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-------------------------------c--cCCHHHHHH
Confidence 3589999999999999999999999999999877321 0 012355666
Q ss_pred HHHHH-HhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecC---CCC------ceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYV-SHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL---SPG------RVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~-~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~---~~~------~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.... ++.++++ +.++.|.++...+......+...+.. ..+ +. ..+.+|.||+|+| .+|+...
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDI--KETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccc--eEEEcCEEEEEEC--cccCCcc
Confidence 66644 4567766 99999999986542223445443210 000 00 3799999999999 6776543
No 297
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.20 E-value=4.6e-05 Score=79.11 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~ 41 (395)
.+||+|||+|.||+++|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999998764
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=98.19 E-value=3.1e-06 Score=82.39 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=38.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCeEEEecCCCCCcccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCYASIWK 47 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-~~~v~vie~~~~~gg~~~ 47 (395)
.++||+|||||++||++|..|.+. |.+|+|+|+++.+||...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 467999999999999999999999 999999999999998543
No 299
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.18 E-value=7.6e-06 Score=76.29 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYA 43 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~g 43 (395)
.+|+|||||.+|+.+|..|+++|++|+|||+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999877543
No 300
>PLN02546 glutathione reductase
Probab=98.16 E-value=3e-05 Score=75.75 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=74.8
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||..|+.+|..|.+.+.+|+++++.+.+. + ....++...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------------------------------~--~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------------------------------R--GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------------------------------c--ccCHHHHHH
Confidence 4689999999999999999999999999999876321 0 012466677
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+.+.+++.++++ +.++.++++...+ .+...+...++ ....+|.||+|+| .+|+..
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g--------~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG--------TVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe--------EEEecCEEEEeec--cccCCC
Confidence 777777888776 9999999997643 24444443321 3445899999999 566654
No 301
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.16 E-value=1.6e-05 Score=75.66 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=70.1
Q ss_pred CeEEEECCChHHHHHHHHHhh--------------cCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~--------------~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 73 (395)
.+++|||||+.|+..|..|.. .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 489999999999999999875 367899999876321
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 74 YPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
+. ...++.+.+.+.+++.++++ +.+++|+++..+ . |.+.++ .++.+|.+|+|+|.
T Consensus 224 -~~--~~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~----~--v~~~~g--------~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GS--FDQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK----E--VVLKDG--------EVIPTGLVVWSTGV 278 (424)
T ss_pred -cc--CCHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC----E--EEECCC--------CEEEccEEEEccCC
Confidence 11 12356778888888889877 889999988642 2 666654 67899999999994
No 302
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.14 E-value=3.5e-06 Score=81.25 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=38.4
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCCCCccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKK 48 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~~gg~~~~ 48 (395)
++||+|||||++||++|..|.++ |++|+|+|+++.+||..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 36899999999999999999998 9999999999999996554
No 303
>PLN02676 polyamine oxidase
Probab=98.14 E-value=4.2e-06 Score=80.65 Aligned_cols=49 Identities=35% Similarity=0.447 Sum_probs=42.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCcccccCCCCc
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDR 53 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~~~~~~ 53 (395)
...+||+|||||++||++|..|.++|. +|+|+|+++.+||.+....+.+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC
Confidence 346899999999999999999999998 6999999999999766544443
No 304
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.14 E-value=6.2e-06 Score=76.90 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=69.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhh---cCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCC
Q 016088 188 NVLVVGSGNSGMEIALDLANH---AAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~---g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (395)
+|+|||+|..|+.+|..+.+. ..+|+++.+++.....+... ..+....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~---~~~~g~~~------------------------- 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLP---GMIAGHYS------------------------- 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhh---HHHheeCC-------------------------
Confidence 489999999999999999643 56899999887422211100 00000000
Q ss_pred CCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCC--eEEecCCcEEeCcEEEEccCCCCCccc
Q 016088 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN--EVIFENGHSHHFDSIVFCTGFKRSTNV 335 (395)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~--~v~~~~g~~~~~D~vi~atG~~~~~~~ 335 (395)
...+...+.+.+++.+++++.+ +..++.+ .|.+++|+++++|.+|+|||..++.+.
T Consensus 53 ---------------~~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 53 ---------------LDEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ---------------HHHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC
Confidence 0001111234455567888887 8888754 588899989999999999999997654
No 305
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.14 E-value=2.6e-05 Score=68.50 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENC 41 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~ 41 (395)
.+.||+|||||-.|.+.|..|+++ |++|+|+|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999874 789999999873
No 306
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.12 E-value=4.6e-06 Score=81.02 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=36.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
.||+|||||++||++|..|++.|++|+|+|+++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999999999843
No 307
>PLN02268 probable polyamine oxidase
Probab=98.12 E-value=3.9e-06 Score=80.24 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=36.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
.+|+|||||.+||+||..|.+.|++|+|+|+++.+||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 3799999999999999999999999999999999998543
No 308
>PRK07233 hypothetical protein; Provisional
Probab=98.11 E-value=3.3e-06 Score=80.72 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=36.4
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
+|+|||||++||++|..|+++|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 589999999999999999999999999999999999543
No 309
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.10 E-value=2.8e-05 Score=71.56 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=85.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
...|+++|+|..|+.+|..|...+.+|++|++.+.. ..-.....+.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------~~~lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------LPRLFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------hhhhhhHHHHHH
Confidence 357999999999999999999999999999988731 001234567777
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIR 157 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~ 157 (395)
+..+.+..++++ +.++.+.++.-++......|.+.++ ..+.+|.||+.+| .+|+.+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC--------CEeccCeEEEeec--ccccccccc
Confidence 788888888877 9999999998877545556777776 8999999999999 788877654
No 310
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.08 E-value=5.1e-06 Score=80.64 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=36.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
+||+|||||.+|+++|..|+++|++|+|+|+++..||..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 39 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSA 39 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCce
Confidence 689999999999999999999999999999999988843
No 311
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.08 E-value=4.5e-06 Score=77.01 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=37.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~ 48 (395)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence 68999999999999999999999999999999999985443
No 312
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.04 E-value=6.1e-06 Score=80.39 Aligned_cols=37 Identities=30% Similarity=0.442 Sum_probs=34.9
Q ss_pred EEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 10 VIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
|+|||||.+||+||..|++.|++|+|+|+++.+||..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999999999843
No 313
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=7e-06 Score=76.62 Aligned_cols=38 Identities=29% Similarity=0.332 Sum_probs=36.2
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
++|+|+|||.|||+||..|+++|++|+|+|.++.+||.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 47999999999999999999999999999999999983
No 314
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.03 E-value=6.6e-06 Score=76.39 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
.+||+|||||..|..+|..+.-+|+++.++|+.+...|+-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 59999999999999999999999999999999987766544
No 315
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.01 E-value=4.5e-05 Score=69.84 Aligned_cols=58 Identities=17% Similarity=0.365 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 81 AQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
.++...+++++++.+.++ +++++|+++...+ +....+.+.++ ..+.+|+||+|.|..+
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g--------~~i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG--------EEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC--------cEEecCEEEEccCcch
Confidence 477788888999999777 9999999999865 22455677665 7999999999999743
No 316
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.00 E-value=2.8e-05 Score=74.11 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETS 149 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~ 149 (395)
...-+...+...++..+..+ ..++.|+++.... ++.+.|.+.. ..+++.++|-|+|.|.
T Consensus 185 DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~---------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPH---------GSIETECVVNAAGVWA 243 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccC---------cceecceEEechhHHH
Confidence 44566677777888888777 9999999998654 3555677765 6899999999999985
No 317
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.99 E-value=9.2e-06 Score=75.98 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=37.8
Q ss_pred eEEEECCChHHHHHHHHHhhcC--CCeEEEecCCCCCcccccC
Q 016088 9 EVIIVGAGPSGLATAACLSLQS--IPYVILERENCYASIWKKY 49 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~--~~v~vie~~~~~gg~~~~~ 49 (395)
+|+|||||++||++|.+|.+++ .+++|+|+.+.+||.....
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~ 44 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV 44 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEE
Confidence 6999999999999999999999 8999999999999976654
No 318
>PLN02568 polyamine oxidase
Probab=97.99 E-value=1.1e-05 Score=78.59 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-----CCeEEEecCCCCCccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS-----IPYVILERENCYASIWKK 48 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~-----~~v~vie~~~~~gg~~~~ 48 (395)
..||+|||||++||++|..|.+.| ++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 479999999999999999999887 899999999999996543
No 319
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.99 E-value=1e-05 Score=74.33 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=37.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKK 48 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~ 48 (395)
..+|+|||||.|||+||.+|.+.|. +++|+|..+.+||.-+.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 4689999999999999999997765 89999999999986554
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.97 E-value=0.0001 Score=71.88 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=69.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||..|+.+|..|++.+.+|+++++.+.+. .. ..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~~----~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------AD----KV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------hh----HH
Confidence 4689999999999999999999999999999765210 01 12
Q ss_pred HHHHHHh-cCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+...+++ .++++ +.++.++++..++ +....|.+.++.. ++. ..+.+|.||+|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~-~~~--~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNS-GEE--KQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCC-CcE--EEEEcCEEEEEeC--CcCCch
Confidence 3333433 46666 9999999987543 1222355544321 121 6799999999999 566544
No 321
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.96 E-value=7e-06 Score=67.05 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=79.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCC-ccccc-CCCCceeeccccccccC-CCCCCCCC--CCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA-SIWKK-YSYDRLRLHLAKQFCQL-PHLPFPSS--YPMFVS 79 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~g-g~~~~-~~~~~l~~~~~~~~~~~-~~~~~~~~--~~~~~~ 79 (395)
..||+|||+|.+||++|+.+.++ ..+|.|||..-..| |.|.. ..+..+..+.|..++-- -..|+.+. +-..-+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedegdYVVVKH 155 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEGDYVVVKH 155 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCCCEEEEee
Confidence 35999999999999999999865 56999999876555 47764 34555666666554421 12222221 111112
Q ss_pred HHHHHHH-HHHHHHhcCCcceeeeeeeEEEeEEeC-CCC---------cEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 80 RAQFIEY-LDHYVSHFNIVPSIRYQRSVESASYDE-ATN---------MWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 80 ~~~~~~~-l~~~~~~~~~~~~i~~~~~V~~i~~~~-~~~---------~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
..-+..- +.+.+...+++. +..+.|+++...+ +.+ .|++...+...+....+..+.+..++-+||+
T Consensus 156 AALFtSTvmsk~LalPNVKL--FNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGH 232 (328)
T KOG2960|consen 156 AALFTSTVMSKVLALPNVKL--FNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGH 232 (328)
T ss_pred HHHHHHHHHHHHhcCCccee--echhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCC
Confidence 2222222 223333345443 4445555553321 111 3766665543322323368899999999996
No 322
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.95 E-value=3.7e-05 Score=69.72 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=89.0
Q ss_pred CCeEEEECCChHHHHHHHHHhh--------------cCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPS 72 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~--------------~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 72 (395)
-.+++||||||.|..+|.+|+. ..++|+++|..+.+-
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL----------------------------- 268 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL----------------------------- 268 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----------------------------
Confidence 4689999999999999999965 245899999877321
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 73 SYPMFVSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
-.-.+.+.+|.++.....++.+ +.++.|..+... ..++.+.+ |+. ..+.|-.||.|||...+|.
T Consensus 269 ----~mFdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~----~I~~~~~~----g~~--~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495|consen 269 ----NMFDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEK----TIHAKTKD----GEI--EEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred ----HHHHHHHHHHHHHHhhhcccee--ecccEEEeecCc----EEEEEcCC----Cce--eeecceEEEecCCCCCchh
Confidence 0123567788888887778777 888888888643 33344443 344 7899999999999766665
Q ss_pred CCCCC-CccccccCCCCCcceeecccCCCCCCCCCCeEEEEcCCC
Q 016088 153 TPDIR-GLSSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196 (395)
Q Consensus 153 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~g~ 196 (395)
.-.+. ..++- ....+...+|...... +.|--||...
T Consensus 333 ~k~lm~~i~e~------~rr~L~vDE~LrV~G~--~nvfAiGDca 369 (491)
T KOG2495|consen 333 IKDLMKQIDEQ------GRRGLAVDEWLRVKGV--KNVFAIGDCA 369 (491)
T ss_pred hhhHhhcCCcc------CceeeeeeceeeccCc--CceEEecccc
Confidence 44431 22221 1124444555554443 3355566433
No 323
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=1.2e-05 Score=70.09 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=38.9
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~ 49 (395)
+|++|||||.+|+..|..|+++|.+|.|+|+++.+||.+...
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 799999999999999999999999999999999999976643
No 324
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.92 E-value=5.2e-06 Score=76.14 Aligned_cols=138 Identities=21% Similarity=0.268 Sum_probs=69.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChh-hHHHHH---HHHHHHHhcchhhcCC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCG-GVDTLM---VMLSRLVYGDLSKYGI 263 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~ 263 (395)
+|+|||+|..|+|+|..+++.|.+|.++......+.-.... -......+. +...+. ..+........-.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn----psigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN----PSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS----SEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch----hhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 58999999999999999999999999994322111000000 000000111 111110 0000001111111111
Q ss_pred CCCCCCcchh-hccCCCceeeCchhhhhhcC-CcEEEecC-ceEEeCC-----eEEecCCcEEeCcEEEEccCC
Q 016088 264 HKPREGPFFM-KAAYGKYPVIDAGTCEKIKS-GQIQVLPG-IESIRGN-----EVIFENGHSHHFDSIVFCTGF 329 (395)
Q Consensus 264 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-v~~~~~~-----~v~~~~g~~~~~D~vi~atG~ 329 (395)
....+++.-. .....-...+...+.+.+++ .+++++.. |+.+..+ +|.+.+|+++.+|.||+|||.
T Consensus 77 lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp ESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1112221111 00011122344455566665 78999887 7777542 588999999999999999999
No 325
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.92 E-value=1.3e-05 Score=77.25 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=36.3
Q ss_pred CeEEEECCChHHHHHHHHHhhc------CCCeEEEecCCCCCccccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ------SIPYVILERENCYASIWKK 48 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~------~~~v~vie~~~~~gg~~~~ 48 (395)
++|+|||||++||++|..|.+. +.+|+|+|+++.+||..+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 3699999999999999999986 3799999999999996554
No 326
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.91 E-value=1.6e-05 Score=82.11 Aligned_cols=101 Identities=25% Similarity=0.201 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (395)
.+|+|+|||+|+.|+-+|..|++.|.+|+++.+.+. .+++-.+++.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~----------------------------------~GG~l~yGIP 350 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD----------------------------------LGGVLRYGIP 350 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC----------------------------------CCceEEccCC
Confidence 489999999999999999999999999999998761 1222233332
Q ss_pred CCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecCceEEeCCeEEecCCcEEeCcEEEEccCCC-CC
Q 016088 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFK-RS 332 (395)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~-~~ 332 (395)
.-+.. ..+-+...+.+++.+++++.++. -...+.+++.....+|.|++|||.. |.
T Consensus 351 ~~rlp-----------~~vi~~~i~~l~~~Gv~f~~n~~--vG~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 351 EFRLP-----------NQLIDDVVEKIKLLGGRFVKNFV--VGKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred CCcCh-----------HHHHHHHHHHHHhhcCeEEEeEE--eccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 11100 01112224556667888877721 1224666666666899999999995 54
No 327
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.89 E-value=0.00012 Score=67.04 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCC--CeEEEecCCCCCcccccCCCCce--eeccccccccCCCCCCC---------C
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRL--RLHLAKQFCQLPHLPFP---------S 72 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~--~v~vie~~~~~gg~~~~~~~~~l--~~~~~~~~~~~~~~~~~---------~ 72 (395)
...+|+|||||.++...+..|.+++. +|+++-|++.+--. .+..+ ....|...-.|...+.. .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~----d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPM----DDSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCC----ccccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 35799999999999999999999865 79999887732100 00000 01111111111111100 0
Q ss_pred C-CCCCCCHH---HHHHHH--HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeec
Q 016088 73 S-YPMFVSRA---QFIEYL--DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASG 146 (395)
Q Consensus 73 ~-~~~~~~~~---~~~~~l--~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG 146 (395)
. .-.-++.+ ++.+.+ +.+..+. ...++.+++|+++...+ ++.|.+.+.+... ++. ..+.+|.||+|||
T Consensus 265 ~~ny~~i~~~~l~~iy~~lY~~~v~g~~--~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~-~~~--~~~~~D~VilATG 338 (341)
T PF13434_consen 265 HTNYGGIDPDLLEAIYDRLYEQRVSGRG--RLRLLPNTEVTSAEQDG-DGGVRLTLRHRQT-GEE--ETLEVDAVILATG 338 (341)
T ss_dssp GGTSSEB-HHHHHHHHHHHHHHHHHT-----SEEETTEEEEEEEEES--SSEEEEEEETTT---E--EEEEESEEEE---
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCC--CeEEeCCCEEEEEEECC-CCEEEEEEEECCC-CCe--EEEecCEEEEcCC
Confidence 0 00001112 222222 2222222 34458899999999886 4589999988544 232 7899999999999
No 328
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.89 E-value=0.0001 Score=64.12 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=34.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc--CCCeEEEecCCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ--SIPYVILERENCYA 43 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--~~~v~vie~~~~~g 43 (395)
..||++|||||..|++.|++|.-+ +.+|.|+|++..++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 469999999999999999999876 78999999987665
No 329
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.89 E-value=1.5e-05 Score=76.58 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=35.0
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
+|+|||||++|+++|..|.++|++|+|+|+++.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999988884
No 330
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.88 E-value=2.9e-05 Score=68.23 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhH-HHHHHHHHHHHhcchhhcC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGV-DTLMVMLSRLVYGDLSKYG 262 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (395)
....+|+|||+|++|+-+|..|++.|.+|.++.+.+.. . .......+. ++.... ......+. +++
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~-G--gg~~~gg~~---~~~~~v~~~~~~~l~--------~~g 88 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF-G--GGMWGGGML---FNKIVVQEEADEILD--------EFG 88 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC-C--CccccCccc---cccccchHHHHHHHH--------HCC
Confidence 33568999999999999999999999999999987621 0 000000000 000000 00111111 122
Q ss_pred CCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe--CC----eEEec-----------CCcEEeCcEE
Q 016088 263 IHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GN----EVIFE-----------NGHSHHFDSI 323 (395)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~--~~----~v~~~-----------~g~~~~~D~v 323 (395)
+......... .......+...+.+...+.+++++.+ +..+. ++ ++... +...+.++.|
T Consensus 89 v~~~~~~~g~---~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~V 165 (257)
T PRK04176 89 IRYKEVEDGL---YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAV 165 (257)
T ss_pred CCceeecCcc---eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEE
Confidence 2111100000 00011233344555556667888776 44442 22 22221 2246899999
Q ss_pred EEccCCCCCccccccCC-----------CCccCCCC-CCCCCCCCcccCCCCeEEEeccccc--------cc--CccHHH
Q 016088 324 VFCTGFKRSTNVWLKGD-----------DSMLNDDG-IPKQSYPNHWKGKNGLYCVGLSRKG--------LY--GAAADA 381 (395)
Q Consensus 324 i~atG~~~~~~~~~~~~-----------~~~~~~~g-~~~~~~~~~~~~~~~vya~Gd~~~~--------~~--~a~~~a 381 (395)
|.|||........+... .....+.| ..+++ +...-.||+|++|=++.. |. .....+
T Consensus 166 I~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg 243 (257)
T PRK04176 166 VDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSG 243 (257)
T ss_pred EEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhHhHHHhH
Confidence 99999766543222111 01111122 11222 222347999999976432 22 566788
Q ss_pred HHHHHHhhcccC
Q 016088 382 QNIADHINSILS 393 (395)
Q Consensus 382 ~~~a~~i~~~l~ 393 (395)
+.+|+.|.++|+
T Consensus 244 ~~~a~~~~~~~~ 255 (257)
T PRK04176 244 KKVAELILEKLK 255 (257)
T ss_pred HHHHHHHHHHhh
Confidence 999999988875
No 331
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00012 Score=67.17 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERE 39 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~ 39 (395)
..|||+|||||.||+.+|.+.++.|.+.+++-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999998888753
No 332
>PLN02529 lysine-specific histone demethylase 1
Probab=97.86 E-value=2.1e-05 Score=78.45 Aligned_cols=42 Identities=38% Similarity=0.332 Sum_probs=38.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
..++|+|||||++|+++|..|+++|++|+|+|+++.+||...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999998887543
No 333
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.85 E-value=1.8e-05 Score=75.51 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHh--hcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~--~g~~v~~~~r~~ 219 (395)
.+++|+|||+|+.|+.+|..|+. .|.+|+++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 37889999999999999999986 689999999987
No 334
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.84 E-value=1.9e-05 Score=74.70 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=40.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~ 48 (395)
.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 699999999999999999999999999999999999998775
No 335
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.83 E-value=2.6e-05 Score=71.62 Aligned_cols=41 Identities=34% Similarity=0.390 Sum_probs=38.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 5 AAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
....||+|||+|.+||++|..|.+.|++|+|+|.++.+||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34689999999999999999999999999999999999984
No 336
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.82 E-value=2.5e-05 Score=73.10 Aligned_cols=142 Identities=20% Similarity=0.266 Sum_probs=66.1
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhH------H-------HHHHHhhc--CChhhHHHHHHHHHH
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMV------Y-------LGLVLLRY--VPCGGVDTLMVMLSR 252 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~------~-------~~~~~~~~--~~~~~~~~~~~~~~~ 252 (395)
+|+|||+|++|+-+|..+++.|.+|.++.|.+ ........ + ...+..++ .+......+...-..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 58999999999999999999999999999986 22111100 1 11111110 001111111110000
Q ss_pred HHhcchhhcCCCCC--CCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEe--CCe---EEecCCcEEeCcEE
Q 016088 253 LVYGDLSKYGIHKP--REGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIR--GNE---VIFENGHSHHFDSI 323 (395)
Q Consensus 253 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~--~~~---v~~~~g~~~~~D~v 323 (395)
....=..+.++... +.+..+. ...+...+-+.+.+.+++.+++++.+ |..+. +++ |.++++..+.+|.|
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP--~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFP--KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEE--TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECC--CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 00000112222111 0111000 01123344456677778889999988 88874 344 66667789999999
Q ss_pred EEccCCCCC
Q 016088 324 VFCTGFKRS 332 (395)
Q Consensus 324 i~atG~~~~ 332 (395)
|+|+|-..-
T Consensus 159 ILAtGG~S~ 167 (409)
T PF03486_consen 159 ILATGGKSY 167 (409)
T ss_dssp EE----SSS
T ss_pred EEecCCCCc
Confidence 999998754
No 337
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.00017 Score=66.81 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=64.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCC-eEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~-v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+|+|||+|..|+.+|..|.+.|.+ |+|+++.+... ......
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~---------------------------------~~~~~~--- 215 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE---------------------------------APAGKY--- 215 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh---------------------------------CCCCHH---
Confidence 36899999999999999999999987 99998765100 000011
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecC--------------CCCceeeEEEEeCEEEEeecCCCCC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLL--------------SPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~--------------~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
....+++.++++ ++++.++++..+. +.-.+.+.+.. ..++. ..+.+|.||+|+| .+|
T Consensus 216 -~~~~l~~~gi~i--~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~vi~a~G--~~p 286 (352)
T PRK12770 216 -EIERLIARGVEF--LELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSE--FVLEADTVVFAIG--EIP 286 (352)
T ss_pred -HHHHHHHcCCEE--eeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCe--EEEECCEEEECcc--cCC
Confidence 223355667776 8888888876432 21123222110 00121 6799999999999 555
Q ss_pred C
Q 016088 152 F 152 (395)
Q Consensus 152 ~ 152 (395)
+
T Consensus 287 ~ 287 (352)
T PRK12770 287 T 287 (352)
T ss_pred C
Confidence 4
No 338
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.77 E-value=0.00032 Score=68.48 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=68.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||..|+.+|..|+..+.+|+++++.+.+. .. ..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~~----~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------AD----QV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------cc----HH
Confidence 4689999999999999999999999999999776210 00 12
Q ss_pred HHHHHHh-cCCcceeeeeeeEEEeEEeCCCCcE-EEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 87 LDHYVSH-FNIVPSIRYQRSVESASYDEATNMW-NVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 87 l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
+...+.+ .++++ +.++.++++..++ +.. .+++.+..+ ++. ..+.+|.+++|+| ..|+..
T Consensus 392 l~~~l~~~~gI~i--~~~~~v~~i~~~~--g~v~~v~~~~~~~-g~~--~~i~~D~v~~~~G--~~p~~~ 452 (517)
T PRK15317 392 LQDKLRSLPNVTI--ITNAQTTEVTGDG--DKVTGLTYKDRTT-GEE--HHLELEGVFVQIG--LVPNTE 452 (517)
T ss_pred HHHHHhcCCCcEE--EECcEEEEEEcCC--CcEEEEEEEECCC-CcE--EEEEcCEEEEeEC--CccCch
Confidence 3333333 46665 9999999998643 332 244443221 222 6799999999999 556543
No 339
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.76 E-value=0.00013 Score=64.00 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..-+++|||+|++|+-+|..|++.|.+|.++.|.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35679999999999999999999999999999986
No 340
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.76 E-value=0.00019 Score=68.81 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=67.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+|+|||||..|+.+|..|.+.|.+|+++++.+.. ..+.....
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~---------------------------------~~~~~~~~--- 315 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE---------------------------------DMTARVEE--- 315 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc---------------------------------cCCCCHHH---
Confidence 368999999999999999999999999999987520 00111111
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcE-EEEEe---------ecC-----CCCceeeEEEEeCEEEEeecCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKAS---------NLL-----SPGRVIEEYYSGRFLVVASGETSNP 151 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~v~~~---------~~~-----~~~~~~~~~~~~d~vVlAtG~~~~p 151 (395)
.+.+++.++++ ++++.++++..++ +++. .|.+. ++. ..++. ..+.+|.||+|+| ..|
T Consensus 316 -~~~l~~~GV~~--~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~--~~i~~D~Vi~AiG--~~p 387 (449)
T TIGR01316 316 -IAHAEEEGVKF--HFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAE--CKLEADAVIVAIG--NGS 387 (449)
T ss_pred -HHHHHhCCCEE--EeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCce--EEEECCEEEECCC--CCC
Confidence 12345568776 8888888886543 2332 23332 110 00121 5799999999999 566
Q ss_pred CC
Q 016088 152 FT 153 (395)
Q Consensus 152 ~~ 153 (395)
+.
T Consensus 388 ~~ 389 (449)
T TIGR01316 388 NP 389 (449)
T ss_pred Cc
Confidence 54
No 341
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.73 E-value=6.8e-05 Score=76.91 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 347899999999999999999999999999999876
No 342
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.72 E-value=4.1e-05 Score=71.05 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
.||+|||||++|+.+|..|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999976644
No 343
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.70 E-value=4.4e-05 Score=73.50 Aligned_cols=37 Identities=35% Similarity=0.342 Sum_probs=34.9
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcc
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENCYASI 45 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~ 45 (395)
+|+|||||++|+++|..|.++|++|+|+|+++.+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCce
Confidence 5899999999999999999999999999999998873
No 344
>PRK06847 hypothetical protein; Provisional
Probab=97.68 E-value=9.6e-05 Score=69.21 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh-HHHHHHHhhcCCh-hhHHHHHHHHHHHHhcchhhcCC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM-VYLGLVLLRYVPC-GGVDTLMVMLSRLVYGDLSKYGI 263 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (395)
.++|+|||+|++|+-+|..|++.|.+|+++.+++... +... ..+.....+.+.. ...+.+.... .... ...+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~g~g~~l~~~~~~~l~~~gl~~~~~~~~--~~~~---~~~~ 77 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWR-VYGAGITLQGNALRALRELGVLDECLEAG--FGFD---GVDL 77 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc-cCCceeeecHHHHHHHHHcCCHHHHHHhC--CCcc---ceEE
Confidence 5689999999999999999999999999999876311 1000 0000000000000 0111111000 0000 0000
Q ss_pred CCCCCCcc------------hhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC----eEEecCCcEEeCcEEEE
Q 016088 264 HKPREGPF------------FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN----EVIFENGHSHHFDSIVF 325 (395)
Q Consensus 264 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~ 325 (395)
..+..... .........+.+...+.+.+.+.+++++.+ +..++.+ .+.+++|+++.+|.||.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 00000000 000001112233444555566667888777 7776643 26678899999999999
Q ss_pred ccCCCCCc
Q 016088 326 CTGFKRST 333 (395)
Q Consensus 326 atG~~~~~ 333 (395)
|+|..+..
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99987654
No 345
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.66 E-value=6.6e-05 Score=75.51 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=37.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
..+|+|||||++|+++|..|.+.|++|+|+|+++.+||..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence 5789999999999999999999999999999999888853
No 346
>PLN02487 zeta-carotene desaturase
Probab=97.65 E-value=6.3e-05 Score=73.40 Aligned_cols=39 Identities=31% Similarity=0.305 Sum_probs=36.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIW 46 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~ 46 (395)
++|+|||||++|+++|..|.++|++|+|+|+.+.+||.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 599999999999999999999999999999999988754
No 347
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.64 E-value=2.1e-05 Score=66.59 Aligned_cols=32 Identities=38% Similarity=0.735 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+++|||+|+.|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996655
No 348
>PLN02661 Putative thiazole synthesis
Probab=97.63 E-value=0.00032 Score=63.62 Aligned_cols=40 Identities=25% Similarity=0.545 Sum_probs=33.8
Q ss_pred CCCCCCCCeEEEEcCCCCHHHHHHHHHhh-cCeeEEEEecC
Q 016088 180 NGKPYGGKNVLVVGSGNSGMEIALDLANH-AAKTSLVIRSP 219 (395)
Q Consensus 180 ~~~~~~~~~v~ViG~g~~a~e~a~~l~~~-g~~v~~~~r~~ 219 (395)
+..+....+++|||+|.+|+-+|..|++. |.+|+++.+..
T Consensus 86 ~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 86 DMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 34445567899999999999999999976 78999999865
No 349
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.63 E-value=0.00036 Score=60.14 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcC------CCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQS------IPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~------~~v~vie~~~~~gg 44 (395)
+.++|+|+|||..|+++|.+|.+++ +.|++||.....||
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 4589999999999999999999986 68999998775543
No 350
>PLN02463 lycopene beta cyclase
Probab=97.62 E-value=0.00032 Score=66.70 Aligned_cols=136 Identities=16% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHK 265 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (395)
.-+++|||+|++|+-+|..|++.|.+|.++.+++....|..-.-....+... .+.+.+...+. +...+ .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~l---gl~~~l~~~w~-----~~~v~-~-- 96 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL---GLLDCLDTTWP-----GAVVY-I-- 96 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHC---CcHHHHHhhCC-----CcEEE-E--
Confidence 3479999999999999999999999999999876322222110000001000 00111110000 00000 0
Q ss_pred CCCCcchhhccC--CCceeeCchhhhhhcCCcEEEecC-ceEEeCC----eEEecCCcEEeCcEEEEccCCCCC
Q 016088 266 PREGPFFMKAAY--GKYPVIDAGTCEKIKSGQIQVLPG-IESIRGN----EVIFENGHSHHFDSIVFCTGFKRS 332 (395)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 332 (395)
............ .....+...+.+.+.+.+++++.. |++++.+ .|.+++|.++++|+||.|+|....
T Consensus 97 ~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 97 DDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000000000000 011122344455555667888765 6666643 377889989999999999998764
No 351
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.61 E-value=6.6e-05 Score=66.26 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=36.8
Q ss_pred cCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 4 QAAGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
.....+|+|||+|++||+||..|.++ .+|++||....+||..+
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 33457999999999999999999776 59999999999998554
No 352
>PRK12831 putative oxidoreductase; Provisional
Probab=97.61 E-value=0.00072 Score=64.97 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
..+|+|||||..|+.+|..|.+.|.+|+++.+.+
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4699999999999999999999999999998765
No 353
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.61 E-value=6.7e-05 Score=63.62 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=58.4
Q ss_pred EEEcCCCCHHHHHHHHHhhcCe-eEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCC-C
Q 016088 190 LVVGSGNSGMEIALDLANHAAK-TSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKP-R 267 (395)
Q Consensus 190 ~ViG~g~~a~e~a~~l~~~g~~-v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 267 (395)
+|||+|++|+-+|..|.+.|.+ +.++.|.+. +-..+.......+...+.... ..+.+... .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~---~Gg~w~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 63 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR---PGGVWRRYYSYTRLHSPSFFS--------------SDFGLPDFES 63 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS---STTHHHCH-TTTT-BSSSCCT--------------GGSS--CCCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC---CCCeeEEeCCCCccccCcccc--------------ccccCCcccc
Confidence 6999999999999999999999 999998751 101100000000000000000 00000000 0
Q ss_pred CCcc-----hhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCe----EEecCCcEEeCcEEEEccCCC
Q 016088 268 EGPF-----FMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNE----VIFENGHSHHFDSIVFCTGFK 330 (395)
Q Consensus 268 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~----v~~~~g~~~~~D~vi~atG~~ 330 (395)
.... ......+....+.+.+...+++.+++++.+ |++++.++ |.++++..+.+|.||+|||..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 64 FSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp SCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred cccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 0000 000011122233344455556666666665 77776553 788888889999999999973
No 354
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.60 E-value=7.5e-05 Score=72.19 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=37.6
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccc
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWK 47 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~ 47 (395)
|||+|||+|++|+.+|..|++.|++|++||++...|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999998888774
No 355
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.60 E-value=6e-05 Score=68.11 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcC-CCeEEEecCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQS-IPYVILERENC 41 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~~ 41 (395)
||+||||+|++|..+|.+|++.+ .+|+|+|+.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999987 69999999873
No 356
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.58 E-value=0.0011 Score=60.23 Aligned_cols=39 Identities=36% Similarity=0.522 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc----CCCeEEEecC--CCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ----SIPYVILERE--NCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~--~~~gg 44 (395)
..+||+|+|||+.|++.|+.|... .++++++|.. +.+++
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 379999999999999999999864 4599999977 55543
No 357
>PRK06834 hypothetical protein; Provisional
Probab=97.57 E-value=0.00018 Score=69.55 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcc--cchhhHHHHHHHhhcCCh-hhHHHHHHHHHHHHhcchhhcC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHV--LSREMVYLGLVLLRYVPC-GGVDTLMVMLSRLVYGDLSKYG 262 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~--~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+... .++. ..+.....+.+.. ...+.+................
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra-~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRA-GGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcce-eeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEe
Confidence 4679999999999999999999999999999876321 1111 0111111111100 1111111100000000000000
Q ss_pred CCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCC--e--EEecCCcEEeCcEEEEccCCCCCc
Q 016088 263 IHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGN--E--VIFENGHSHHFDSIVFCTGFKRST 333 (395)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~--~--v~~~~g~~~~~D~vi~atG~~~~~ 333 (395)
+...................+...+.+.+++.+++++.+ ++.++.+ + +.+.+|+++.+|+||.|.|..+..
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000000000000112233344455556667888887 7666543 2 555678889999999999987644
No 358
>PLN02612 phytoene desaturase
Probab=97.55 E-value=0.00012 Score=72.09 Aligned_cols=38 Identities=32% Similarity=0.474 Sum_probs=35.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
.++|+|||||++|+++|..|.++|++++|+|+++.+||
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 57899999999999999999999999999999988877
No 359
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.54 E-value=9.9e-05 Score=69.71 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHH-hhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~-~~g~~v~~~~r~~ 219 (395)
.+++|+|||+|++|+.+|..|+ ..|.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4789999999999999999765 5689999999988
No 360
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.54 E-value=0.00015 Score=74.74 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 36789999999999999999999999999999876
No 361
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.52 E-value=0.00033 Score=67.02 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..++|+|||+|++|+-+|..|.+.|.+|+++.+++
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 36889999999999999999999999999999876
No 362
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.49 E-value=0.0011 Score=63.75 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=65.9
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+|+|||+|..|+.+|..|.+.|. +|+++++.+.. .++.....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~---------------------------------~~~~~~~~-- 317 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE---------------------------------EMPASEEE-- 317 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc---------------------------------cCCCCHHH--
Confidence 4689999999999999999999998 89999876510 00011111
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCC-CcEEEEEe-------ecC----CCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEAT-NMWNVKAS-------NLL----SPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~-~~~~v~~~-------~~~----~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
.+.+++.++++ ++++.+..+..++.. ....+... ++. ..++. ..+.+|.||+|+| ..|+
T Consensus 318 --~~~~~~~GV~i--~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~--~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 318 --VEHAKEEGVEF--EWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSE--FTLPADLVIKAIG--QTPN 388 (457)
T ss_pred --HHHHHHCCCEE--EecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCce--EEEECCEEEECcc--CCCC
Confidence 23345668776 889999888754311 01222111 000 00122 6899999999999 5665
No 363
>PLN02976 amine oxidase
Probab=97.48 E-value=0.00015 Score=75.96 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=39.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~ 48 (395)
..++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3579999999999999999999999999999999999997654
No 364
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.48 E-value=0.0018 Score=60.84 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCCCCcc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASI 45 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~~gg~ 45 (395)
..++=|||+|.|+|++|..|.+. |.+|+|+|+.+..||.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 35788999999999999999985 4599999999877764
No 365
>PLN03000 amine oxidase
Probab=97.48 E-value=0.00017 Score=72.85 Aligned_cols=43 Identities=33% Similarity=0.301 Sum_probs=39.0
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~ 48 (395)
...+|+|||||++|+.+|..|.+.|++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3579999999999999999999999999999999999986543
No 366
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.0016 Score=64.21 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
..+|+|||||..|+.+|..|.+.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999876
No 367
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.44 E-value=0.00032 Score=68.31 Aligned_cols=33 Identities=42% Similarity=0.553 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
-.|+|||+|+.|+++|..+++.|.+|.++.+.+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 479999999999999999999999999999864
No 368
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.43 E-value=0.00032 Score=71.39 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 458999999999999999999999999999999764
No 369
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0002 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
++||+|||||.||++|+..|.++|.++.||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4899999999999999999999999999998754
No 370
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.39 E-value=0.00023 Score=74.46 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
++++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36899999999999999999999999999999875
No 371
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.37 E-value=0.00025 Score=64.48 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCC--eEEEecCCCCCcccc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIP--YVILERENCYASIWK 47 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~--v~vie~~~~~gg~~~ 47 (395)
..+|+|+|||.+||++|.+|++++.+ ++++|..+..||-.+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 47999999999999999999999764 566999999998433
No 372
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.36 E-value=0.0063 Score=62.38 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCC-eEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIP-YVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~-v~vie~~~ 40 (395)
..+|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 36899999999999999999999987 99999765
No 373
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00039 Score=61.04 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCY 42 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~ 42 (395)
..|.|||||.||..+|+.++++|++|.++|-++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 46999999999999999999999999999977643
No 374
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0012 Score=62.87 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=84.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCe-eEEEEecC----CcccchhhH---HHHHHH--hhcCChhhHHHHHHHHHHHHh
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAK-TSLVIRSP----VHVLSREMV---YLGLVL--LRYVPCGGVDTLMVMLSRLVY 255 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~-v~~~~r~~----~~~~p~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 255 (395)
..+++|||+|++|+-+|..|.+.|.. +.++.++. .|...+... ...... +.+.|..
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-------------- 73 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-------------- 73 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC--------------
Confidence 56899999999999999999999988 99999875 222111100 000000 0000100
Q ss_pred cchhhcCCCCCCCCcchhhccCCCceeeCchhhhhhcC----CcEEEecC--ceEEeCC----eEEecCCcE--EeCcEE
Q 016088 256 GDLSKYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS----GQIQVLPG--IESIRGN----EVIFENGHS--HHFDSI 323 (395)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~--v~~~~~~----~v~~~~g~~--~~~D~v 323 (395)
....... .+.+.+.+...+++ ..+.+... +...+++ .|+.++|.. +.+|.|
T Consensus 74 ----------------~~~~~~~-~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~v 136 (443)
T COG2072 74 ----------------WDEAFAP-FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFV 136 (443)
T ss_pred ----------------CcccCCC-cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEE
Confidence 0000000 11122233333333 23444444 3333333 277777765 459999
Q ss_pred EEccCCCCCccccccCCCCccCCCCCCCCCCCCcc---cCCCCeEEEeccccc
Q 016088 324 VFCTGFKRSTNVWLKGDDSMLNDDGIPKQSYPNHW---KGKNGLYCVGLSRKG 373 (395)
Q Consensus 324 i~atG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~vya~Gd~~~~ 373 (395)
|+|||+-.. -..+...+...-.|.+.|..+... -...+|-+||--+++
T Consensus 137 V~ATG~~~~--P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 137 VVATGHLSE--PYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred EEeecCCCC--CCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 999999532 244555566677788777622221 234679999865443
No 375
>PRK02106 choline dehydrogenase; Validated
Probab=97.31 E-value=0.00027 Score=69.75 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.3
Q ss_pred CCeEEEECCChHHHHHHHHHhh-cCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSL-QSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~-~~~~v~vie~~~ 40 (395)
.||+||||+|++|+.+|..|++ .|.+|+|+|+.+
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 5899999999999999999999 799999999885
No 376
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.29 E-value=0.0018 Score=68.16 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.. ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4689999999999999999999996 58888876511 11
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEe--ecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKAS--NLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
.+.+.+++.++++ +.++.|+.+..++ ..-.|... ++.. ..+.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g~~------~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGGAG------QRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCCce------EEEECCEEEEcCC--cCchh
Confidence 2334456667776 8899998887533 21123333 2222 7899999999999 56654
No 377
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.27 E-value=0.00062 Score=55.01 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=25.8
Q ss_pred EEEcCCCCHHHHHHHHHhhc-----CeeEEEEecC
Q 016088 190 LVVGSGNSGMEIALDLANHA-----AKTSLVIRSP 219 (395)
Q Consensus 190 ~ViG~g~~a~e~a~~l~~~g-----~~v~~~~r~~ 219 (395)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 3599999865
No 378
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.26 E-value=0.019 Score=55.43 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~ 40 (395)
..+|+|||+|..|+.+|..+.+.|. +|+++++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999985 799999865
No 379
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.26 E-value=0.0032 Score=60.78 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=64.2
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+|+|||+|..|+.+|..+.+.|. +|++++..+..+..+ .. ....+.++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~----~~~~~~~~~~----- 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NK----NNPWPYWPMK----- 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------cc----ccCCcccchH-----
Confidence 4689999999999999999999886 788776544211000 00 0000111110
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEE-EEEe-----ec---CCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWN-VKAS-----NL---LSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~-v~~~-----~~---~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
...+.+.+.++++ ++++.++++..++ +..+ |... ++ ..+++. ..+.+|.||+|+| ..|+
T Consensus 334 ~~~~~~~~~GV~i--~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~--~~i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVER--EFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSE--FVLPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeE--EeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCce--EEEECCEEEECcC--cCCC
Confidence 1123345557766 8888888886422 3322 2221 11 001222 6899999999999 5554
No 380
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.26 E-value=0.0013 Score=61.19 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhh--cCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~--g~~v~~~~r~~ 219 (395)
.++|||+|+.|+.+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 479999999999999999987 88999999876
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.00053 Score=66.42 Aligned_cols=35 Identities=31% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+++++|+|+|.+|+++|..|++.|.+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999999999999999998765
No 382
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.24 E-value=0.0006 Score=64.29 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4579999999999999999999999999999976
No 383
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.0025 Score=60.25 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.++++|||+|++|+-+|..|.+.|.+++++.|++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 6899999999999999999999999999999987
No 384
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.22 E-value=0.00098 Score=64.89 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcc--cchhhHHHHHHHhhcCChh-hHHHHHH---HHHHHHhcchhhc
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHV--LSREMVYLGLVLLRYVPCG-GVDTLMV---MLSRLVYGDLSKY 261 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~--~p~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ 261 (395)
.|+|||+|..|+++|..+++.|.+|.++.+.+... ++-.. ........ +.+.+.. ............+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~p------s~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~ 75 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNP------AIGGPAKGILVKEIDALGGLMGKAADKAGLQF 75 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccc------cccccccchhhhhhhcccchHHHHHHhhceeh
Confidence 58999999999999999999999999999864111 11000 00000000 1111110 0000000000111
Q ss_pred CCCCCCCCcchhhc-cCCCceeeCchhhhhhcC-CcEEEecC-ceEEe-C-C----eEEecCCcEEeCcEEEEccCCCCC
Q 016088 262 GIHKPREGPFFMKA-AYGKYPVIDAGTCEKIKS-GQIQVLPG-IESIR-G-N----EVIFENGHSHHFDSIVFCTGFKRS 332 (395)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~i~~~~~-v~~~~-~-~----~v~~~~g~~~~~D~vi~atG~~~~ 332 (395)
.+..+.+++..... ...-...+...+.+.+++ +++.++.+ +..+. . + +|.+.+|..+.+|.||+|||.-.+
T Consensus 76 r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 76 RVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred eecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 22222222211000 001111222334444554 47888777 54442 2 2 478889989999999999999865
Q ss_pred c
Q 016088 333 T 333 (395)
Q Consensus 333 ~ 333 (395)
.
T Consensus 156 g 156 (617)
T TIGR00136 156 G 156 (617)
T ss_pred C
Confidence 4
No 385
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.21 E-value=0.017 Score=58.19 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~ 40 (395)
..+|+|||+|..|+.+|..+.+.|. +|+++.+++
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999987 699998765
No 386
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.20 E-value=0.00061 Score=59.98 Aligned_cols=39 Identities=36% Similarity=0.475 Sum_probs=34.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC--CCCcc
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN--CYASI 45 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~--~~gg~ 45 (395)
.+||+|||+|.+||-+|..|+..|.+|+|+|++. .+||.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 6899999999999999999999999999999754 55663
No 387
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.20 E-value=0.00044 Score=65.03 Aligned_cols=145 Identities=21% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchh-hHHHHHHHhhcCChhhH-HHHHHHHH----HHHhcchh
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSRE-MVYLGLVLLRYVPCGGV-DTLMVMLS----RLVYGDLS 259 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~-~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~ 259 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+..+.+.. ...+.....+.+..... +.+..... .+...+..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 45799999999999999999999999999999832333322 11111111111111111 11111000 00000000
Q ss_pred --hcCCCCCCCCcchhhccCCCceeeCchhhhhhcC-CcEEEecC--ceEEeCCe----EEec-CCcEEeCcEEEEccCC
Q 016088 260 --KYGIHKPREGPFFMKAAYGKYPVIDAGTCEKIKS-GQIQVLPG--IESIRGNE----VIFE-NGHSHHFDSIVFCTGF 329 (395)
Q Consensus 260 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~--v~~~~~~~----v~~~-~g~~~~~D~vi~atG~ 329 (395)
...+....... ...........+...+.+.+.+ ++++++.+ |+.++.++ ++++ ||+++++|+||-|=|.
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 82 RRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred ceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCC
Confidence 00000000000 0000001122333444555544 55899987 88887664 7888 9999999999999986
Q ss_pred CC
Q 016088 330 KR 331 (395)
Q Consensus 330 ~~ 331 (395)
..
T Consensus 161 ~S 162 (387)
T COG0654 161 NS 162 (387)
T ss_pred ch
Confidence 43
No 388
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.19 E-value=0.0013 Score=63.69 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
..+|+|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999765
No 389
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.19 E-value=0.0014 Score=59.47 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhc----CCCeE-EEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQ----SIPYV-ILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA 81 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----~~~v~-vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (395)
...|.|||.|.-|...|+.|.++ |.+|. ||+..-. ...+-.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n---------------------------------m~kiLPe 393 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN---------------------------------MEKILPE 393 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC---------------------------------hhhhhHH
Confidence 46799999999999999999874 33332 3332210 0111123
Q ss_pred HHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCC
Q 016088 82 QFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTP 154 (395)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~ 154 (395)
-+.++-.+.+++.++.+ +-+..|+++.... +...+.+.++ ..++.|.||+|+| -.|+.-
T Consensus 394 yls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG--------~~l~tD~vVvavG--~ePN~e 452 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG--------SELRTDLVVVAVG--EEPNSE 452 (659)
T ss_pred HHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC--------CeeeeeeEEEEec--CCCchh
Confidence 34445556677778887 9999999999877 6666788877 8899999999999 566643
No 390
>PRK09126 hypothetical protein; Provisional
Probab=97.18 E-value=0.0013 Score=61.88 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
-+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 391
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.17 E-value=0.0005 Score=68.84 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+++++|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 47999999999999999999999999999999877
No 392
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00058 Score=69.01 Aligned_cols=98 Identities=26% Similarity=0.366 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIH 264 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (395)
.+++|.|||+|+.|+-+|..|.+.|+.|+++.|++ ..+++-.|++.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d----------------------------------r~ggll~ygip 1829 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD----------------------------------RVGGLLMYGIP 1829 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC----------------------------------CcCceeeecCC
Confidence 48999999999999999999999999999999998 22344455554
Q ss_pred CCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCeEEecCCcEEeCcEEEEccCCCCC
Q 016088 265 KPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENGHSHHFDSIVFCTGFKRS 332 (395)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~ 332 (395)
......+ +-+.....+.+.+|+++++ |-+ .+ ..|+-.-+.|.||+|+|.+..
T Consensus 1830 nmkldk~-----------vv~rrv~ll~~egi~f~tn~eigk----~v-s~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1830 NMKLDKF-----------VVQRRVDLLEQEGIRFVTNTEIGK----HV-SLDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred ccchhHH-----------HHHHHHHHHHhhCceEEeeccccc----cc-cHHHHhhccCeEEEEeCCCCC
Confidence 3333221 1122345677778888666 221 12 123334578999999999843
No 393
>PRK05868 hypothetical protein; Validated
Probab=97.16 E-value=0.0017 Score=60.68 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
++|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 479999999999999999999999999999987
No 394
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.15 E-value=0.0013 Score=62.32 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 469999999999999999999999999999876
No 395
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.14 E-value=0.00061 Score=64.31 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+.+|+|||+|.+|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 5689999999999999999999999999999987
No 396
>PRK07236 hypothetical protein; Provisional
Probab=97.11 E-value=0.00066 Score=63.81 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
...+|+|||+|.+|+-+|..|++.|.+|+++.|.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 46789999999999999999999999999999986
No 397
>PRK06184 hypothetical protein; Provisional
Probab=97.11 E-value=0.0012 Score=64.38 Aligned_cols=34 Identities=32% Similarity=0.700 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4579999999999999999999999999999986
No 398
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00049 Score=64.73 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
-.|+|||+|..|+|+|...++.|+++.+++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 579999999999999999999999998887554
No 399
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.08 E-value=0.00075 Score=63.39 Aligned_cols=32 Identities=34% Similarity=0.674 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+=+|..|++.|.+|+++.|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999987
No 400
>PRK09897 hypothetical protein; Provisional
Probab=97.07 E-value=0.0037 Score=60.69 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcC--eeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAA--KTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~--~v~~~~r~~ 219 (395)
++|+|||+|++|+-++..|.+.+. +|+++.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 579999999999999999987654 699999865
No 401
>PRK06753 hypothetical protein; Provisional
Probab=97.06 E-value=0.0017 Score=60.74 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999987
No 402
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.04 E-value=0.0018 Score=60.97 Aligned_cols=32 Identities=34% Similarity=0.670 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 48999999999999999999999999999876
No 403
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00068 Score=66.29 Aligned_cols=39 Identities=31% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCcCCCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 2 KEQAAGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
.....++|+||||+|.+|..+|..|+..+.+|+|+|+..
T Consensus 2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 344557999999999999999999998899999999874
No 404
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.03 E-value=0.00089 Score=62.00 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+++|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999884
No 405
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.03 E-value=0.031 Score=56.42 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=64.3
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC-CeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~-~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
..+|+|||||..|+-+|..+.+.|. +|+++.+++... ++......
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~---------------------------------~~~~~~e~- 513 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN---------------------------------MPGSKKEV- 513 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC---------------------------------CCCCHHHH-
Confidence 3689999999999999999999986 699998765210 01111111
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcE-EEEEee---------cCC-----CCceeeEEEEeCEEEEeecCCCC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMW-NVKASN---------LLS-----PGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~v~~~~---------~~~-----~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
+.+.+.++++ ++++.+.++..+++ +.. .|.+.. +.. .++. ..+.+|.||+|.| ..
T Consensus 514 ---~~~~~~Gv~~--~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~--~~i~~D~Vi~AiG--~~ 583 (654)
T PRK12769 514 ---KNAREEGANF--EFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE--FVMPADAVIMAFG--FN 583 (654)
T ss_pred ---HHHHHcCCeE--EeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCce--EEEECCEEEECcc--CC
Confidence 2345567776 88888888765432 322 222211 100 1222 6799999999999 45
Q ss_pred CC
Q 016088 151 PF 152 (395)
Q Consensus 151 p~ 152 (395)
|+
T Consensus 584 p~ 585 (654)
T PRK12769 584 PH 585 (654)
T ss_pred CC
Confidence 54
No 406
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.00 E-value=0.00097 Score=64.48 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 185 GGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 185 ~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+++++|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46899999999999999999999999999999876
No 407
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.94 E-value=0.00063 Score=64.74 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=26.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.|+|||+|+.|+-+|..+++.|.+|.++.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 48999999999999999999999999999887
No 408
>PRK07588 hypothetical protein; Provisional
Probab=96.93 E-value=0.0017 Score=61.26 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 68999999999999999999999999999876
No 409
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.91 E-value=0.002 Score=60.29 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=71.6
Q ss_pred eEEEEcCCCCHHHHHHHH--HhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCC
Q 016088 188 NVLVVGSGNSGMEIALDL--ANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHK 265 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l--~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (395)
.++|||+|++|.-+|..| +..|.+|.++++.+....|....+ .....-+.. +...+...+. ...+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW--~~~~~~~~~-~~~~v~~~w~--------~~~v~~ 69 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTW--CFWEKDLGP-LDSLVSHRWS--------GWRVYF 69 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccc--ccccccccc-hHHHHheecC--------ceEEEe
Confidence 479999999999999999 777889999988763222222110 000000000 0011100111 111111
Q ss_pred CCCCcchhh-cc-CCCceeeCchhhhhhcCCcEEEecC-ceEEeCCe----EEecCCcEEeCcEEEEccCCCCC
Q 016088 266 PREGPFFMK-AA-YGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNE----VIFENGHSHHFDSIVFCTGFKRS 332 (395)
Q Consensus 266 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 332 (395)
+........ .. .-....+...+.+.+...++.+... |++++.++ +.+++|.++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 111111111 00 0011223333445555456666555 88887764 58889999999999999997654
No 410
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.90 E-value=0.0014 Score=58.90 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999886
No 411
>PRK08244 hypothetical protein; Provisional
Probab=96.88 E-value=0.0022 Score=62.47 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 469999999999999999999999999999986
No 412
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.86 E-value=0.0014 Score=62.41 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999875
No 413
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.85 E-value=0.0019 Score=60.81 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4699999999999999999999999999998873
No 414
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.84 E-value=0.0024 Score=60.42 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHHhhc--CeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHA--AKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g--~~v~~~~r~~ 219 (395)
+|+|||+|+.|+-+|..|++.| .+|+++.+.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 5899999999999999999985 7899999986
No 415
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.83 E-value=0.0016 Score=63.45 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.|+|+|||+|++|+-++..|.+.|-+++++.+++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 3799999999999999999999999999999987
No 416
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.83 E-value=0.0018 Score=54.71 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+++++++|||||.+|..-+..|.+.|++|+++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999999999999999997644
No 417
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.81 E-value=0.0018 Score=55.14 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=25.7
Q ss_pred EEEEcCCCCHHHHHHHHHhh--cCeeEEEEecC
Q 016088 189 VLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (395)
Q Consensus 189 v~ViG~g~~a~e~a~~l~~~--g~~v~~~~r~~ 219 (395)
.+|+|||..|+-+|..|+.. .++|.++.-++
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999976 45677777665
No 418
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.80 E-value=0.014 Score=53.28 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=74.8
Q ss_pred CeEEEECCChHHHHHHHHHhhc----CCCeEEEecCCCCCcccccCCCCceee--ccccccccCCCCCCCCC------C-
Q 016088 8 VEVIIVGAGPSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRL--HLAKQFCQLPHLPFPSS------Y- 74 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~----~~~v~vie~~~~~gg~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~------~- 74 (395)
..|+|||+|-++..+-..|... ..++..|-|++.+ ....|..+.+ ..|...-.+...+.... .
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf----~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~ 263 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF----LPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR 263 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC----CccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC
Confidence 3499999999999998888754 3346667666521 1111222111 12222222211110000 0
Q ss_pred C--CCCCHH---HHHHHHHH-HHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 75 P--MFVSRA---QFIEYLDH-YVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 75 ~--~~~~~~---~~~~~l~~-~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
. .-++.+ ++.+.+-. .+..-...++++-.++|++++...+ |.+.+.+....+ ++. .++++|.||+|||
T Consensus 264 ~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~-~~~--~t~~~D~vIlATG-- 337 (436)
T COG3486 264 LLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRYRLTLRHHET-GEL--ETVETDAVILATG-- 337 (436)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceEEEEEeeccC-CCc--eEEEeeEEEEecc--
Confidence 0 001222 33333322 2222233445688899999988763 568888877644 233 8899999999999
Q ss_pred CCCCCCC
Q 016088 149 SNPFTPD 155 (395)
Q Consensus 149 ~~p~~~~ 155 (395)
-+..+|.
T Consensus 338 Y~~~~P~ 344 (436)
T COG3486 338 YRRAVPS 344 (436)
T ss_pred cccCCch
Confidence 4555553
No 419
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0027 Score=55.14 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=28.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcC-------CCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQS-------IPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~-------~~v~vie~~~ 40 (395)
..+|+|||+|..|+++|..+.+.. .+|++++.++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 358999999999999998888743 4789987554
No 420
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.79 E-value=0.0012 Score=62.75 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 183 ~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
...+++|+|||+|+.|+.+|..|+..|..|+++.+.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 4457999999999999999999999999999998876
No 421
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.78 E-value=0.0028 Score=59.74 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3579999999999999999999999999999875
No 422
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.017 Score=51.96 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=68.1
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.++|+|||||-+++..|..|.+.+.+|+++=+++.+ ...+.+.+.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~-----------------------------------ra~~~~~~~ 187 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF-----------------------------------RAEEILVER 187 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-----------------------------------CcCHHHHHH
Confidence 459999999999999999999999999999887732 122233333
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
++.. .++.+ ++++.+..+.-++ -. .|...+.. ++. ..+.+|.++++.| ..|+.
T Consensus 188 l~~~---~~i~~--~~~~~i~ei~G~~-v~--~v~l~~~~--~~~--~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 188 LKKN---VKIEV--LTNTVVKEILGDD-VE--GVVLKNVK--GEE--KELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHhc---CCeEE--EeCCceeEEecCc-cc--eEEEEecC--Cce--EEEEeceEEEecC--CCCch
Confidence 3321 14444 8999998887543 11 25555432 122 7899999999999 56664
No 423
>PRK07045 putative monooxygenase; Reviewed
Probab=96.75 E-value=0.0043 Score=58.41 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999873
No 424
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.75 E-value=0.0042 Score=58.60 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=28.3
Q ss_pred EEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 190 LVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 190 ~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|||+|++|+-+|..+++.|.+|.++.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999999999999876
No 425
>PRK07190 hypothetical protein; Provisional
Probab=96.74 E-value=0.0042 Score=60.14 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999887
No 426
>PLN02697 lycopene epsilon cyclase
Probab=96.74 E-value=0.0039 Score=60.57 Aligned_cols=133 Identities=13% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHK 265 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (395)
..+|+|||+|+.|+-+|..+++.|.+|.++.+..++..+ ..+....+.-+. +.+.+...+.. .. +..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n---~GvW~~~l~~lg--l~~~i~~~w~~-----~~---v~~ 174 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGVWEDEFKDLG--LEDCIEHVWRD-----TI---VYL 174 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc---cccchhHHHhcC--cHHHHHhhcCC-----cE---EEe
Confidence 357999999999999999999999999999775422211 100000010010 00111101100 00 000
Q ss_pred CCCCcchhhccC--CCceeeCchhhhhhcCCcEEEecC-ceEEeC--Ce---EEecCCcEEeCcEEEEccCCCC
Q 016088 266 PREGPFFMKAAY--GKYPVIDAGTCEKIKSGQIQVLPG-IESIRG--NE---VIFENGHSHHFDSIVFCTGFKR 331 (395)
Q Consensus 266 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~--~~---v~~~~g~~~~~D~vi~atG~~~ 331 (395)
+........... -....+.+.+.+.+.+.+++++.. ++.++. ++ +.+.+|.++.++.||.|+|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000000000 011223344555556667887665 777753 22 4567888999999999999865
No 427
>PLN02785 Protein HOTHEAD
Probab=96.73 E-value=0.002 Score=63.62 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
..||+||||||.+|+.+|..|.+ +.+|+|+|+++
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 36999999999999999999999 68999999886
No 428
>PRK08013 oxidoreductase; Provisional
Probab=96.73 E-value=0.0029 Score=59.78 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
.+|+|||+|+.|+-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5799999999999999999999999999999873
No 429
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.69 E-value=0.0015 Score=64.16 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHhhcC-CCeEEEecCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQS-IPYVILEREN 40 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~-~~v~vie~~~ 40 (395)
|+||||||.+|+.+|.+|++.+ .+|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999875
No 430
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.67 E-value=0.016 Score=55.56 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.-+|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5689999999999999999999999999999875
No 431
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.66 E-value=0.0025 Score=59.86 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHHhhc-CeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g-~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.| .+|+++.|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999976
No 432
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.66 E-value=0.0053 Score=57.67 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 479999999999999999999999999999875
No 433
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.62 E-value=0.0027 Score=60.36 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=29.9
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcC-eeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAA-KTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~-~v~~~~r~~ 219 (395)
+|+|||+|..|+-+|..|++.|. +|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 68999999999999999999985 999999987
No 434
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.011 Score=52.69 Aligned_cols=103 Identities=17% Similarity=0.054 Sum_probs=74.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
..+++|||||..++..|--++-.|-++.++-|.+.+- .-..+.+.+.
T Consensus 189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL---------------------------------R~FD~~i~~~ 235 (478)
T KOG0405|consen 189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL---------------------------------RGFDEMISDL 235 (478)
T ss_pred CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh---------------------------------cchhHHHHHH
Confidence 5799999999999999999999999998888776321 0112355566
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPD 155 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~ 155 (395)
+.+.....++.+ +.++.++.+.+..+ +...+....+ .....|.|++|+| -.|+...
T Consensus 236 v~~~~~~~ginv--h~~s~~~~v~K~~~-g~~~~i~~~~--------~i~~vd~llwAiG--R~Pntk~ 291 (478)
T KOG0405|consen 236 VTEHLEGRGINV--HKNSSVTKVIKTDD-GLELVITSHG--------TIEDVDTLLWAIG--RKPNTKG 291 (478)
T ss_pred HHHHhhhcceee--cccccceeeeecCC-CceEEEEecc--------ccccccEEEEEec--CCCCccc
Confidence 666666667666 99999999988763 4444444443 4456899999999 5666544
No 435
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0022 Score=59.31 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=30.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.-.|+|||||..|+|+|...++.|++.+++..+-
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 4579999999999999999999999988887543
No 436
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.57 E-value=0.0029 Score=59.63 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=72.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhh-HHHHHH-HhhcCChhhHHHHHHHHHHHHhcc-hhhcCC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREM-VYLGLV-LLRYVPCGGVDTLMVMLSRLVYGD-LSKYGI 263 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (395)
-.|+|||+|++|.-+|..|++.|.+|.++.+++..-.|.-. ..+... +....+..... +........+.. .....+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeeeEEEecCCceEE
Confidence 47999999999999999999999999999997633333222 111111 11111111111 111111100000 000001
Q ss_pred CCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeC--Ce---EEecCCcEEeCcEEEEccCCCC
Q 016088 264 HKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRG--NE---VIFENGHSHHFDSIVFCTGFKR 331 (395)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~--~~---v~~~~g~~~~~D~vi~atG~~~ 331 (395)
..+. .....-....+..++.+..++.+.++..+ +..+.. ++ .+..++.++.+++||.|.|...
T Consensus 83 ~~~~-----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 83 EVPV-----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred ecCC-----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0000 00001112344455666777788888887 444442 22 2223336889999999998653
No 437
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.55 E-value=0.0047 Score=52.10 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEec
Q 016088 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (395)
Q Consensus 183 ~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~ 218 (395)
++.+++++|||+|..|...+..|.+.|++|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 356899999999999999999999999999999653
No 438
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.54 E-value=0.015 Score=54.90 Aligned_cols=33 Identities=18% Similarity=0.493 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhh--cCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~--g~~v~~~~r~~ 219 (395)
-+|+|||+|.+|+-+|..|++. |.+|+++.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999874
No 439
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0024 Score=58.72 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=35.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYAS 44 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg 44 (395)
..||++|||+|..||.+|..|++.|.+|+++|++...||
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 369999999999999999999999999999999866665
No 440
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.52 E-value=0.0055 Score=58.03 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEec
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~ 218 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 357999999999999999999999999999986
No 441
>PRK06126 hypothetical protein; Provisional
Probab=96.52 E-value=0.0064 Score=59.99 Aligned_cols=34 Identities=38% Similarity=0.611 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4679999999999999999999999999999876
No 442
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.49 E-value=0.02 Score=54.07 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=65.5
Q ss_pred EEECCChHHHHHH-HHHh----hcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHH
Q 016088 11 IIVGAGPSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (395)
Q Consensus 11 vIIGaG~aGl~~A-~~l~----~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (395)
+|++.|..|+..+ ..+. +.|.+|++++..+. ..+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pp-----------------------------------slpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPP-----------------------------------SVPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCC-----------------------------------CCchHHHHH
Confidence 5688888888887 4443 46999999987651 123346888
Q ss_pred HHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEE-EEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 86 YLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNV-KASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
.+.+.+++.++.+ +.+++|+++...+ +...+ ...++ +. ..+++|.+|+|+|.
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g----~~--~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH----GD--IPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC----ce--EEEECCEEEEeCCC
Confidence 8888888888776 9999999998765 33333 22222 11 67999999999994
No 443
>PRK10015 oxidoreductase; Provisional
Probab=96.48 E-value=0.0028 Score=60.38 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
-+|+|||+|++|+-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 479999999999999999999999999999876
No 444
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.42 E-value=0.0065 Score=51.59 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEec
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~ 218 (395)
.++++|+|||||..|..=+..|.+.|++||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 34889999999999999999999999999999643
No 445
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.37 E-value=0.0094 Score=56.08 Aligned_cols=34 Identities=32% Similarity=0.590 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 3479999999999999999999999999999976
No 446
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.34 E-value=0.0037 Score=61.83 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 458999999999999999999999999999999876
No 447
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.34 E-value=0.0058 Score=57.20 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=30.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 68999999999999999999999999999864
No 448
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.33 E-value=0.012 Score=51.83 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=26.9
Q ss_pred ceEEeC--CeEEecCCcEEeCcEEEEccCCCCCcc
Q 016088 302 IESIRG--NEVIFENGHSHHFDSIVFCTGFKRSTN 334 (395)
Q Consensus 302 v~~~~~--~~v~~~~g~~~~~D~vi~atG~~~~~~ 334 (395)
|.+++. +.|.+.+|+++.+|++|+|+|.+-+..
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccc
Confidence 444443 358899999999999999999998884
No 449
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0096 Score=52.77 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=73.0
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEYL 87 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (395)
=+-+|||||..+|.||-.|+-.|+++++.-|+-.+- -...++.+.+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr----------------------------------GFDqdmae~v 244 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR----------------------------------GFDQDMAELV 244 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc----------------------------------cccHHHHHHH
Confidence 367899999999999999999999999998765221 1235778888
Q ss_pred HHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecC
Q 016088 88 DHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGE 147 (395)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~ 147 (395)
....+.+++.+ .-.+..+.++.-+ .+.+.|...+..+ ++. ..-.||.|++|.|.
T Consensus 245 ~~~m~~~Gikf--~~~~vp~~Veq~~-~g~l~v~~k~t~t-~~~--~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 245 AEHMEERGIKF--LRKTVPERVEQID-DGKLRVFYKNTNT-GEE--GEEEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHhCCce--eecccceeeeecc-CCcEEEEeecccc-ccc--ccchhhhhhhhhcc
Confidence 88888889885 5555556666544 3566676665533 222 55678999999994
No 450
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.30 E-value=0.012 Score=55.55 Aligned_cols=32 Identities=41% Similarity=0.531 Sum_probs=30.4
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|+.|+-+|..|++.|.+|.++.+.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 68999999999999999999999999999875
No 451
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.30 E-value=0.0086 Score=58.63 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=69.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
...-+|||||.-|+.+|..|...|.+++++.=.+.+- .. ... ..--..
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------er--------------QLD---~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------ER--------------QLD---RTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------HH--------------hhh---hHHHHH
Confidence 3457999999999999999999999999997554210 00 000 111234
Q ss_pred HHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCC
Q 016088 87 LDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFT 153 (395)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~ 153 (395)
|+...++.++.+ +.+..++.+.... ..-.+...++ ..+.+|.||.|+| .+|+.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~~--~~~~vr~~DG--------~~i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGED--KVEGVRFADG--------TEIPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcCc--ceeeEeecCC--------CcccceeEEEecc--ccccc
Confidence 556666778776 6666666665422 3344677776 7889999999999 56664
No 452
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.29 E-value=0.0095 Score=56.59 Aligned_cols=34 Identities=26% Similarity=0.493 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4579999999999999999999999999999987
No 453
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.28 E-value=0.0093 Score=58.72 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4679999999999999999999999999999986
No 454
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.27 E-value=0.0062 Score=57.57 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
++|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 789999999999999999999999999999876
No 455
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.24 E-value=0.0098 Score=55.31 Aligned_cols=34 Identities=44% Similarity=0.688 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.++++|||||.+|+++|..|++.|-+|+++.+.|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6889999999999999999999999999999988
No 456
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.20 E-value=0.011 Score=56.62 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=35.8
Q ss_pred eeCchhhhhhcCCcEEEecC-ceEEe--CC----eEEecCCcEEeCcEEEEccCCCCCc
Q 016088 282 VIDAGTCEKIKSGQIQVLPG-IESIR--GN----EVIFENGHSHHFDSIVFCTGFKRST 333 (395)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~-v~~~~--~~----~v~~~~g~~~~~D~vi~atG~~~~~ 333 (395)
.+...+.+...+.+++++.+ |..+. ++ .|.+++|+++++|++|=|+|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 34455566666779999988 55443 23 3778899999999999999997543
No 457
>PRK13984 putative oxidoreductase; Provisional
Probab=96.20 E-value=0.14 Score=51.19 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCC------CeEEEe
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSI------PYVILE 37 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~------~v~vie 37 (395)
..+|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4689999999999999999998753 566663
No 458
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.14 E-value=0.03 Score=51.89 Aligned_cols=62 Identities=8% Similarity=-0.006 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
....++.+.+...+++.++++ +++++|+++ ++ +.|.+.+..+ . ..++||+||+|||..+.|.
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~----~---~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDG----Q---STIEADAVVLALGGASWSQ 144 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCC----c---eEEecCEEEEcCCCccccc
Confidence 366899999999999999887 999999999 22 4588877532 1 5699999999999765543
No 459
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.13 E-value=0.066 Score=51.70 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|.+|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999865
No 460
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.031 Score=52.34 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.5
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhc---CeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHA---AKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g---~~v~~~~r~~ 219 (395)
++|+|||+|++|+.+|..|...- ..|+++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 57999999999999999998752 2389998876
No 461
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.12 E-value=0.016 Score=57.68 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+..+|+|||+|..|+-+|..|++.|.+|+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346789999999999999999999999999999976
No 462
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.02 E-value=0.018 Score=54.15 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=29.7
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEec
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRS 218 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~ 218 (395)
+|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 463
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.99 E-value=0.0069 Score=41.07 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=27.0
Q ss_pred EEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 191 VVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 191 ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
|||+|.+|+-+|..|++.|.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999987
No 464
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.93 E-value=0.01 Score=56.81 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=29.3
Q ss_pred eEEEEcCCCCHHHHHHHHHh----hcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLAN----HAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~----~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++ .|.+|+++.+.+
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999854
No 465
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.91 E-value=0.0087 Score=57.87 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=32.9
Q ss_pred CCCeEEEECCChHHHHHHHHHhhc-CCCeEEEecCCCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQ-SIPYVILERENCY 42 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-~~~v~vie~~~~~ 42 (395)
..||.||||||.||+..|..|.+. ..+|+|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 479999999999999999999987 5799999987643
No 466
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.89 E-value=0.01 Score=55.87 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=34.7
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCccccc
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKK 48 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~ 48 (395)
.+|||+|+|.|..-...|..|++.|.+|+-+|+++..||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 4699999999999999999999999999999999999998875
No 467
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.82 E-value=0.024 Score=53.48 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhh---cCeeEEEEec
Q 016088 186 GKNVLVVGSGNSGMEIALDLANH---AAKTSLVIRS 218 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~---g~~v~~~~r~ 218 (395)
.-+|+|||+|+.|+-+|..|++. |.+|+++.|.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 34799999999999999999998 9999999995
No 468
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.70 E-value=0.02 Score=56.53 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4679999999999999999999999999999987
No 469
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.69 E-value=0.012 Score=47.55 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
+|+|||||..|.++|..|+++|.+|+++.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998765
No 470
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.66 E-value=0.088 Score=51.59 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCC
Q 016088 79 SRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSN 150 (395)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~ 150 (395)
....+...+...+..+|..+ +.+++|+++..+. +..+.|++.+..+ ++. ..+++++||+|+|.|+.
T Consensus 126 dp~~l~~al~~~A~~~Ga~i--~~~t~V~~i~~~~-~~v~gv~v~~~~~-g~~--~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGARI--FTYTKVTGLIREG-GRVTGVKVEDHKT-GEE--ERIEAQVVINAAGIWAG 191 (516)
T ss_pred CHHHHHHHHHHHHHHcCCEE--EcCcEEEEEEEEC-CEEEEEEEEEcCC-CcE--EEEEcCEEEECCCcchH
Confidence 34566666666777888776 9999999998754 2334455543211 121 68999999999998763
No 471
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.65 E-value=0.026 Score=53.23 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3579999999999999999999999999999987
No 472
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.029 Score=50.71 Aligned_cols=101 Identities=19% Similarity=0.308 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhh--cCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANH--AAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGI 263 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~--g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (395)
.++|.|||+|+.|+=.|..|.+. +.+|+++.+.|.. -++.+|++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP----------------------------------FGLvRyGV 65 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP----------------------------------FGLVRYGV 65 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc----------------------------------cceeeecc
Confidence 44899999999999999998874 5789999998832 25556666
Q ss_pred CCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecCceEEeCCeEEecCCcEEeCcEEEEccCCCCCc
Q 016088 264 HKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPGIESIRGNEVIFENGHSHHFDSIVFCTGFKRST 333 (395)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~ 333 (395)
.+.... .+.+...+.+..+..+..+..+|.--+ .+.+.+ -+-.+|.|++|+|...+-
T Consensus 66 APDHpE----------vKnvintFt~~aE~~rfsf~gNv~vG~--dvsl~e-L~~~ydavvLaYGa~~dR 122 (468)
T KOG1800|consen 66 APDHPE----------VKNVINTFTKTAEHERFSFFGNVKVGR--DVSLKE-LTDNYDAVVLAYGADGDR 122 (468)
T ss_pred CCCCcc----------hhhHHHHHHHHhhccceEEEecceecc--cccHHH-HhhcccEEEEEecCCCCc
Confidence 543322 122334455566667777655422100 122222 123699999999998654
No 473
>PRK06185 hypothetical protein; Provisional
Probab=95.62 E-value=0.019 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4579999999999999999999999999999876
No 474
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.59 E-value=0.0095 Score=44.25 Aligned_cols=36 Identities=33% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 184 ~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+++++++|||+|..|..-+..|.+.|++|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 468999999999999999999999999999998763
No 475
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.58 E-value=0.014 Score=48.35 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
+|.|||+|..|...|..++..|++|+++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999865
No 476
>PRK11445 putative oxidoreductase; Provisional
Probab=95.58 E-value=0.013 Score=54.37 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=29.2
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
+|+|||+|++|+-+|..|++. .+|+++.|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 689999999999999999998 8999999876
No 477
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.49 E-value=0.028 Score=52.95 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
..+|+|||+|+.|+-+|..|++.|.+|+++.+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35799999999999999999999999999999873
No 478
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.021 Score=49.14 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
++++|||+|..|...|..|.+.|..|++||+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999876
No 479
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.37 E-value=0.015 Score=46.64 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcCCCCCCC
Q 016088 189 VLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYGIHKPRE 268 (395)
Q Consensus 189 v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (395)
|+|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~------------------------------------------------- 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP------------------------------------------------- 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-------------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-------------------------------------------------
Q ss_pred CcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCCeEEecCC--cEEeCcEEEEcc
Q 016088 269 GPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENG--HSHHFDSIVFCT 327 (395)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~~v~~~~g--~~~~~D~vi~at 327 (395)
..+.+++.++.+... -...........+- ..-++|+||+|+
T Consensus 32 ------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 32 ------------------RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp ------------------HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred ------------------cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 480
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.024 Score=54.57 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcC
Q 016088 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYG 262 (395)
Q Consensus 183 ~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (395)
.+++++++|+|+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~------------------------------------------- 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE------------------------------------------- 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-------------------------------------------
Q ss_pred CCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC-ceEEeCCeEEecCCcEEeCcEEEEccCCCCCcccc
Q 016088 263 IHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG-IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVW 336 (395)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~ 336 (395)
...-+...+.+.+.++++..+ ... ...-.+|+||.++|..++.+.+
T Consensus 39 ------------------~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 39 ------------------EDQLKEALEELGELGIELVLGEYPE----------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------------------hHHHHHHHHHHHhcCCEEEeCCcch----------hHhhcCCEEEECCCCCCCCHHH
No 481
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.35 E-value=0.015 Score=54.30 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
++|+|||+|..|+++|..|++.|.+|+++.+++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5799999999999999999999999999998763
No 482
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.28 E-value=0.034 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
..+|+|+|||..|+-.|..|++.|-+|.++..+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4579999999999999999999999999998754
No 483
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.22 E-value=0.019 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
...+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 36799999999999999999999999999999873
No 484
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.037 Score=50.18 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
-.+|.|||+|..|..-|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999865
No 485
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.06 E-value=0.041 Score=46.49 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
..+|+|||||..|..-+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5689999999999999999999999999998754
No 486
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.05 E-value=0.041 Score=44.34 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHhhcCCCeEEEecC
Q 016088 6 AGVEVIIVGAGPSGLATAACLSLQSIPYVILERE 39 (395)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~ 39 (395)
...+|+|||||..|..-+..|.+.|.+|+||++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3578999999999999999999999999999643
No 487
>PRK06996 hypothetical protein; Provisional
Probab=95.01 E-value=0.027 Score=53.17 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHHhhc----CeeEEEEecC
Q 016088 186 GKNVLVVGSGNSGMEIALDLANHA----AKTSLVIRSP 219 (395)
Q Consensus 186 ~~~v~ViG~g~~a~e~a~~l~~~g----~~v~~~~r~~ 219 (395)
..+|+|||+|+.|+-+|..|++.| .+|+++.+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 357999999999999999999986 4699999875
No 488
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.01 E-value=0.03 Score=46.75 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 182 ~~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.++..-.|+|+|+|++|+-+|.+|++.|.+|.++.|+.
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 34456789999999999999999999999999999875
No 489
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.98 E-value=0.022 Score=53.54 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=31.0
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSPV 220 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~ 220 (395)
+|+|||+|..|+++|..|++.|.+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 689999999999999999999999999998773
No 490
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.93 E-value=0.073 Score=46.02 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.++|||+|..|+-+|..|...|.+|+++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999876
No 491
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.92 E-value=0.078 Score=48.26 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecCCcccchhhHHHHHHHhhcCChhhHHHHHHHHHHHHhcchhhcC
Q 016088 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIRSPVHVLSREMVYLGLVLLRYVPCGGVDTLMVMLSRLVYGDLSKYG 262 (395)
Q Consensus 183 ~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (395)
+....+++|||+|.+|.-+|..|++.|.+|+++.|++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~------------------------------------------- 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD------------------------------------------- 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-------------------------------------------
Q ss_pred CCCCCCCcchhhccCCCceeeCchhhhhhcCCcEEEecC--ceEEeCCeEEecCCcEEeCcEEEEccCCCCCccccccCC
Q 016088 263 IHKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVLPG--IESIRGNEVIFENGHSHHFDSIVFCTGFKRSTNVWLKGD 340 (395)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~ 340 (395)
.+.+.+.++.+... -..+..-.+.......-++|+||+|+-..... ...+..
T Consensus 39 -------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~~-~~~~~l 92 (313)
T PRK06249 39 -------------------------YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTANA-LLAPLI 92 (313)
T ss_pred -------------------------HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCChH-hHHHHH
Q ss_pred CCccCCCCCCC
Q 016088 341 DSMLNDDGIPK 351 (395)
Q Consensus 341 ~~~~~~~g~~~ 351 (395)
.....+++.++
T Consensus 93 ~~~~~~~~~iv 103 (313)
T PRK06249 93 PQVAAPDAKVL 103 (313)
T ss_pred hhhcCCCCEEE
No 492
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.84 E-value=0.074 Score=49.92 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCC
Q 016088 78 VSRAQFIEYLDHYVSHFNIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPF 152 (395)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~ 152 (395)
.....+...+...+.+ ++.+ ++++.|++++.+. +.|.|.+.++ ..+++|+||+|+|.|+...
T Consensus 132 idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g--------~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG--------EVIAASVVVLANGAQAGQL 193 (381)
T ss_pred cChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC--------CEEEcCEEEEcCCcccccc
Confidence 3446677777776777 7665 9999999998754 5688877654 5689999999999877543
No 493
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.31 Score=43.74 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCeEEEECCChHHHHHHHHHhhcCCCeEEEecCCCCCcccccCCCCceeeccccccccCCCCCCCCCCCCCCCHHHHHHH
Q 016088 7 GVEVIIVGAGPSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEY 86 (395)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~~gg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
.+||+|||||-+|+.+|+.|+---..|+++|=.+.+ .--.-
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL---------------------------------------kAD~V 394 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL---------------------------------------KADAV 394 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh---------------------------------------hhHHH
Confidence 579999999999999999998766689999854421 11233
Q ss_pred HHHHHHhc-CCcceeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCCCCCCCCCCCC
Q 016088 87 LDHYVSHF-NIVPSIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGETSNPFTPDIRG 158 (395)
Q Consensus 87 l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~~~p~~~~~~g 158 (395)
+++.+... ++++ ..+..-+.+.-+.+ ..--+.+.+..+ ++. ..+.-+-|++-.| -.|+...+.|
T Consensus 395 Lq~kl~sl~Nv~i--i~na~Ttei~Gdg~-kV~Gl~Y~dr~s-ge~--~~l~LeGvFVqIG--L~PNT~WLkg 459 (520)
T COG3634 395 LQDKLRSLPNVTI--ITNAQTTEVKGDGD-KVTGLEYRDRVS-GEE--HHLELEGVFVQIG--LLPNTEWLKG 459 (520)
T ss_pred HHHHHhcCCCcEE--EecceeeEEecCCc-eecceEEEeccC-Cce--eEEEeeeeEEEEe--cccChhHhhc
Confidence 44444433 4444 77776666664421 111133333322 232 6777888999999 5666544444
No 494
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.033 Score=53.75 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.6
Q ss_pred eEEEECCChHHHHHHHHHhhcCCCeEEEecCCC
Q 016088 9 EVIIVGAGPSGLATAACLSLQSIPYVILERENC 41 (395)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~~ 41 (395)
+|+|||.|.+|+++|..|.++|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998763
No 495
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.75 E-value=0.03 Score=57.50 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHHhh--cCeeEEEEecC
Q 016088 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVIRSP 219 (395)
Q Consensus 188 ~v~ViG~g~~a~e~a~~l~~~--g~~v~~~~r~~ 219 (395)
+|+|||+|+.|+=+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 689999999999999999998 78999999877
No 496
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.70 E-value=0.32 Score=47.32 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHhhcCeeEEEEecC
Q 016088 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVIRSP 219 (395)
Q Consensus 187 ~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r~~ 219 (395)
.+|+|||+|..|+-+|..+++.|. |.++.+.+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 369999999999999999999987 99998875
No 497
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.69 E-value=0.035 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhcCeeEEEEe
Q 016088 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVIR 217 (395)
Q Consensus 183 ~~~~~~v~ViG~g~~a~e~a~~l~~~g~~v~~~~r 217 (395)
++.+++++|||||..|..-+..|.+.|++|+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45689999999999999999999999999999953
No 498
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.63 E-value=0.035 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.8
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
++|.|||.|..|+.+|..|++.|++|+.+|..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 369999999999999999999999999999766
No 499
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.62 E-value=0.034 Score=52.82 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.4
Q ss_pred eeeeeeeEEEeEEeCCCCcEEEEEeecCCCCceeeEEEEeCEEEEeecCC
Q 016088 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGRVIEEYYSGRFLVVASGET 148 (395)
Q Consensus 99 ~i~~~~~V~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vVlAtG~~ 148 (395)
+|+++++|++|+.++ +.+.|.+.++ ..++||+||+|+...
T Consensus 225 ~i~l~~~V~~I~~~~--~~v~v~~~~g--------~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 225 EIRLNTPVTRIERED--GGVTVTTEDG--------ETIEADAVISAVPPS 264 (450)
T ss_dssp GEESSEEEEEEEEES--SEEEEEETTS--------SEEEESEEEE-S-HH
T ss_pred eeecCCcceeccccc--cccccccccc--------eEEecceeeecCchh
Confidence 469999999999987 7778888876 789999999999853
No 500
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.05 Score=48.70 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHhhcCCCeEEEecCC
Q 016088 8 VEVIIVGAGPSGLATAACLSLQSIPYVILEREN 40 (395)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~~~~v~vie~~~ 40 (395)
.+|.|||+|..|...|..+++.|++|+++|..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999876
Done!