BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016089
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NBZ|B Chain B, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|E Chain E, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|B Chain B, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|E Chain E, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 362
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 80 LDIRQASKLRGPEVRKWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTV 139
+DI KL K +A+QLML EW+IDVP L +W V P GKR ++V+S G+T
Sbjct: 88 MDIDTVKKLP-----KHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTS 142
Query: 140 SRERNGSILHHFPSALPSGARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLY 199
+ ++G ++ F S LP G R + +A+ Y ILDCI++E++QTYYV+D++CWRG+ Y
Sbjct: 143 AYTKSGYCVNRFSSLLPGGNRR---NSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFY 199
Query: 200 DCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYAKDGL 259
DC +FRF+W++SKL E + F+F + + C L P+ DGL
Sbjct: 200 DCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGL 259
Query: 260 LFYNKHAHYQTGNTPLA 276
LFY+K HY G+TPL
Sbjct: 260 LFYHKQTHYSPGSTPLV 276
>pdb|3GB8|B Chain B, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 329
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 95 KWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSA 154
K +A+QLML EW+IDVP L +W V P GKR ++V+S G+T + ++G ++ F S
Sbjct: 97 KHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSL 156
Query: 155 LPSGARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKL 214
LP G R + +A+ Y ILDCI++E++QTYYV+D++CWRG+ YDC +FRF+W++SKL
Sbjct: 157 LPGGNRR---NSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL 213
Query: 215 AETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTP 274
E + F+F + + C L P+ DGLLFY+K HY G+TP
Sbjct: 214 PEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTP 273
Query: 275 LA 276
L
Sbjct: 274 LV 275
>pdb|3GJX|B Chain B, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|E Chain E, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 365
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 95 KWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSA 154
K +A+QLML EW+IDVP L +W V P GKR ++V+S G+T + ++G ++ F S
Sbjct: 101 KHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSL 160
Query: 155 LPSGARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKL 214
LP G R + +A+ Y ILDCI++E++QTYYV+D++CWRG+ YDC +FRF+W++SKL
Sbjct: 161 LPGGNRR---NSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL 217
Query: 215 AETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTP 274
E + F+F + + C L P+ DGLLFY+K HY G+TP
Sbjct: 218 PEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTP 277
Query: 275 LA 276
L
Sbjct: 278 LV 279
>pdb|3NBY|B Chain B, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|E Chain E, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
Length = 361
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 3/182 (1%)
Query: 95 KWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSA 154
K +A+QLML EW+IDVP L +W V P GKR ++V+S G+T + ++G ++ F S
Sbjct: 97 KHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSL 156
Query: 155 LPSGARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKL 214
LP G R + +A+ Y ILDCI++E++QTYYV+D++CWRG+ YDC +FRF+W++SKL
Sbjct: 157 LPGGNRR---NSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL 213
Query: 215 AETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTP 274
E + F+F + + C L P+ DGLLFY+K HY G+TP
Sbjct: 214 PEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTP 273
Query: 275 LA 276
L
Sbjct: 274 LV 275
>pdb|1XK5|A Chain A, Crystal Structure Of The M3g-Cap-Binding Domain Of
Snurportin1 In Complex With A M3gpppg-Cap Dinucleotide
Length = 204
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 97 FASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSALP 156
+A+QLML EW+IDVP L +W V P GKR ++V+S G+T + ++G ++ F S LP
Sbjct: 2 YANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLP 61
Query: 157 SGARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAE 216
G R + +A+ Y ILDCI++E++QTYYV+D++CWRG+ YDC +FRF+W++SKL E
Sbjct: 62 GGNRR---NSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPE 118
Query: 217 TGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTPLA 276
+ F+F + + C L P+ DGLLFY+K HY G+TPL
Sbjct: 119 EEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLV 178
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 40/264 (15%)
Query: 47 VLSLQSQYPDPVPELEIEPESQPQQEAGPLTKDLDIRQASKLRGPEVRKWFASQLMLPEW 106
VL+++S+ +P L I+P G +T+DL + L P+ K F +
Sbjct: 4 VLAMESRVAPEIPGL-IQP--------GNVTQDLKMMVCKLLNSPKPTKTFPGSQPVSFQ 54
Query: 107 MIDVPDR-LSHDWYVFARPAGKRCIV-VSSNGTT-------VSRERNGSILHHFPSALPS 157
DV ++ L+HD+YV + G R ++ + N T + RE N +++ F
Sbjct: 55 HSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLP 114
Query: 158 GARTKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTA-EFRFFW---LNSK 213
+ ++ + Q +LD + QT + + R Y ++DC A R +S+
Sbjct: 115 QKKKEELLETLQDGTLLDGEL--VIQTNPMTKLQELR-YLMFDCLAINGRCLTQSPTSSR 171
Query: 214 LAETGACDAPSHY-----YKFRFSTVPVYNCDQRGLYSAY--------IESVPYAKDGLL 260
LA G ++ Y R +T P + + + +Y ++ +P+ DGL+
Sbjct: 172 LAHLGKEFFKPYFDLRAAYPNRCTTFP-FKISMKHMDFSYQLVKVAKSLDKLPHLSDGLI 230
Query: 261 FYNKHAHYQTGNT-PLALVWKDEK 283
F A Y G L L WK E+
Sbjct: 231 FTPVKAPYTAGGKDSLLLKWKPEQ 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,728,838
Number of Sequences: 62578
Number of extensions: 477449
Number of successful extensions: 875
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 8
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)