Query 016089
Match_columns 395
No_of_seqs 123 out of 133
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_B Snurportin-1; transport 100.0 7E-101 2E-105 759.8 14.5 262 2-287 28-290 (365)
2 1xk5_A Snurportin-1; protein-R 100.0 4.5E-81 1.5E-85 581.8 15.1 189 96-287 1-189 (204)
3 2p8q_B Snurportin-1; heat repe 99.2 2.6E-12 9E-17 91.0 2.5 39 4-42 1-40 (40)
4 3rtx_A MRNA-capping enzyme; gu 98.7 7.6E-08 2.6E-12 95.7 12.4 166 116-290 63-248 (343)
5 1ckm_A MRNA capping enzyme; nu 98.6 7.2E-07 2.5E-11 87.8 15.7 234 116-378 75-327 (330)
6 1p16_A GTP--RNA, mRNA capping 98.5 3.3E-07 1.1E-11 92.0 10.6 169 116-290 60-255 (395)
7 3kyh_C MRNA-capping enzyme sub 98.5 1.2E-06 4.2E-11 90.2 14.5 172 116-290 65-263 (461)
8 1vs0_A Putative DNA ligase-lik 98.1 1.3E-05 4.3E-10 78.0 11.1 154 101-282 11-190 (310)
9 3l2p_A DNA ligase 3; DNA ligas 97.8 6.2E-05 2.1E-09 79.4 10.8 154 101-280 229-421 (579)
10 3gde_A DNA ligase; DNA-binding 97.8 2.4E-05 8.3E-10 82.1 7.5 155 101-280 228-422 (558)
11 2cfm_A Thermostable DNA ligase 97.7 6.9E-05 2.4E-09 78.5 9.4 159 102-283 225-425 (561)
12 2hiv_A Thermostable DNA ligase 97.6 0.00014 4.7E-09 77.3 9.6 160 101-283 255-458 (621)
13 1x9n_A DNA ligase I; 5'-adenyl 97.6 0.00017 5.8E-09 77.5 10.1 165 101-281 311-516 (688)
14 3vnn_A DNA ligase 4; non-homol 97.3 0.00095 3.2E-08 57.9 9.1 93 125-217 8-129 (139)
15 1a0i_A DNA ligase; DNA replica 97.1 0.0012 4E-08 64.8 8.6 91 184-283 144-242 (348)
16 1fvi_A Chlorella virus DNA lig 96.8 0.0011 3.9E-08 64.0 5.7 153 101-283 5-190 (297)
17 3j21_c 50S ribosomal protein L 77.6 2.3 7.8E-05 34.7 4.1 36 125-160 39-80 (87)
18 4a18_H RPL35A; ribosome, eukar 60.9 9 0.00031 32.6 4.3 36 125-160 52-100 (113)
19 1sqr_A 50S ribosomal protein L 56.1 9.7 0.00033 31.4 3.7 36 125-160 39-80 (95)
20 3fb9_A Uncharacterized protein 48.4 4.7 0.00016 33.0 0.6 31 124-154 23-53 (90)
21 3qwu_A DNA ligase; structural 45.9 32 0.0011 34.5 6.3 132 113-273 70-235 (370)
22 3iz5_j 60S ribosomal protein L 42.9 16 0.00053 31.0 3.0 36 125-160 49-98 (111)
23 3izc_j 60S ribosomal protein R 32.3 14 0.00047 31.1 1.0 24 137-160 71-94 (107)
24 2ns5_A Partitioning-defective 27.6 23 0.00079 28.6 1.5 14 114-127 9-22 (85)
25 2dnt_A Chromodomain protein, Y 22.9 1.3E+02 0.0043 23.1 5.0 27 173-202 19-45 (78)
26 3tpo_A Importin subunit alpha- 21.2 5.3 0.00018 40.0 -4.2 42 3-44 10-54 (529)
No 1
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=100.00 E-value=7.2e-101 Score=759.83 Aligned_cols=262 Identities=37% Similarity=0.692 Sum_probs=226.9
Q ss_pred CCCCCCCcCCCCC-CchHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhccccCCCCCCCCCCCCCCCCCccccCCCCccch
Q 016089 2 APPDLRRPFKRTA-ISDQQRRRELSLQRQSQNRRDAQQQARCLASSVLSLQSQYPDPVPELEIEPESQPQQEAGPLTKDL 80 (395)
Q Consensus 2 aph~~~~~~k~~~-~~~Q~~RR~~~Le~Qk~~R~d~~~~aR~La~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~ 80 (395)
|||||++|||+++ +.+|++||+++|++||++|+|++||||+||+++|+. .+ ++||++++.+ +|
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~RR~~~Le~QK~kR~d~~~haR~La~~~~~~----~~----------seeed~~~~e--em 91 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTG----ME----------SEEENKKDDE--EM 91 (365)
T ss_dssp SCCGGGCC---CTTCCSCCHHHHHHHHHTCCCCSCHHHHHHHHHHTCCC-------------------------------
T ss_pred CCCcchhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cc----------cccccccccc--hh
Confidence 8999999999998 558999999999999999999999999999998862 11 1122233333 57
Q ss_pred hhhhhhhccCCCchhhhhhhhccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeeccCCCCCCC
Q 016089 81 DIRQASKLRGPEVRKWFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 81 d~~~~~k~~gk~~rk~ya~qLMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
|++ .|++++++|||||||||||+++|+||+++|+|||||+||||||||++|+|++|+++|+++++|+|+||||++
T Consensus 92 d~~-----~~~k~~k~yanqlMlsEWl~dvP~dL~~~W~~vpcPvGkRcLVVas~G~T~aysk~G~~l~~F~S~LPGG~~ 166 (365)
T 3gjx_B 92 DID-----TVKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNR 166 (365)
T ss_dssp ----------CCCCCSSSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEETTEEEEECTTCCEEEEECCSSTTTCC
T ss_pred ccc-----ccccccHHHHhhHHHHHhcccCCcccccCeeEEeccCCcEEEEEecCceEEEECCCCCEEeeeCCCCCCCCc
Confidence 776 467888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCcEEeeeeeecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC
Q 016089 161 TKDPSGSAQSYCILDCIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD 240 (395)
Q Consensus 161 ~~~~~~~~~~ytILDCIy~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~ 240 (395)
+ ++. +++||||||||++.++|||||||||||||++|||+||||||||+|||+|.++++++++.|||+|++||+|+|+
T Consensus 167 ~--~s~-~~~~TILDCIy~e~~~tyYVLDVL~W~g~~l~dCeteFRffWl~SKL~E~~~l~e~s~~np~~Fv~lp~~~C~ 243 (365)
T 3gjx_B 167 R--NST-AKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCT 243 (365)
T ss_dssp -------CCCCEEEEEEEETTTTEEEEEEEEEETTEECTTSCHHHHHHHHHHHGGGSTTTTSCCSSCCSEEEECCEEECC
T ss_pred c--ccC-CCCCEEEEEEeecCCceEEEEEEeeeCCcccccCchHHHHHHHHHHhhhcccccccccCCCCceeccCCCCcC
Confidence 5 333 7899999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHhHHHHHhcCCCCccccEEeEeccccccCCCCCCeeeeccCCCccc
Q 016089 241 QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTPLALVWKDEKCSQY 287 (395)
Q Consensus 241 ~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G~TPLv~~wKD~~~s~y 287 (395)
+++|+.+++..+||++||||||||++||++|.||||+|||+.+.+..
T Consensus 244 ~esL~~~ls~~~pfe~DGLLFYHK~ahY~~G~TPLVgWLkPyMv~di 290 (365)
T 3gjx_B 244 PESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDV 290 (365)
T ss_dssp HHHHHHHTTCCCSSCEEEEEEEETTCCCCSEEEEEEEEECHHHHTTT
T ss_pred HHHHHHHhccCCCCccceEEEEeccccccCCCCccceecchhhhHHH
Confidence 99999999999999999999999999999999999999996655443
No 2
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-81 Score=581.79 Aligned_cols=189 Identities=41% Similarity=0.863 Sum_probs=180.2
Q ss_pred hhhhhhccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeeccCCCCCCCCCCCCCCCCCcEEee
Q 016089 96 WFASQLMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPSALPSGARTKDPSGSAQSYCILD 175 (395)
Q Consensus 96 ~ya~qLMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S~LPgG~~~~~~~~~~~~ytILD 175 (395)
+|||||||||||+|||+||+++|++||||+||||||||+||+|++|+|+|+++++|+|+||||+++ +++ +++|||||
T Consensus 1 ~ya~~lmlsEWl~diP~dl~~~Wl~vp~P~GkRcLvva~~G~T~~~~k~G~~~~~F~S~LPgG~~~--~~~-~~~~tILD 77 (204)
T 1xk5_A 1 HYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRR--NST-AKDYTILD 77 (204)
T ss_dssp CCSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEETTEEEEECTTSCEEEEECCSSSSSCSS--SCC-TTCCEEEE
T ss_pred CcccchhhhhhcccCCCccCCCeEEEECCCCcEEEEEecCCeEEEECCCCcEEEEEcccCCCCCcc--cCC-CCCCEEEE
Confidence 389999999999999999999999999999999999999999999999999999999999999985 232 68899999
Q ss_pred eeeecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCChHhHHHHHhcCCCCc
Q 016089 176 CIFHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVPYA 255 (395)
Q Consensus 176 CIy~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~~~~L~~~~s~~~p~~ 255 (395)
|||++.++|||||||||||||++|||+||||||||+|||+|++++++.++.|+|+|++||+|+|+.++|+++++..+||+
T Consensus 78 CI~~e~~~tyYVLDvl~W~g~~l~dcetefRffWl~skl~E~~~l~~~s~~n~~~f~~lp~~~c~~~~l~~~~~~~~~~~ 157 (204)
T 1xk5_A 78 CIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFE 157 (204)
T ss_dssp EEEEGGGTEEEEEEEEEETTEECTTSCHHHHHHHHHHHTTTSTTTTSCBTTBSSEEEECCEEECSHHHHHHHHTCCCSSC
T ss_pred EEEecCCcEEEEEEEEEECCceeecCcHHHHHHHHHHHhccccccccccccCCcceEecccccCCHHHHHHHHccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEeEeccccccCCCCCCeeeeccCCCccc
Q 016089 256 KDGLLFYNKHAHYQTGNTPLALVWKDEKCSQY 287 (395)
Q Consensus 256 ~DGLLFYHKea~Y~~G~TPLv~~wKD~~~s~y 287 (395)
+||||||||++||++|.||||+|||+.+....
T Consensus 158 ~DGlLFyHK~a~Y~~G~TPLv~WLkp~mlpei 189 (204)
T 1xk5_A 158 VDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDV 189 (204)
T ss_dssp EEEEEEEESSCCCCSEEEEEEEEECGGGHHHH
T ss_pred cceEEEEeccccccCCCCChhhhcchhhchhh
Confidence 99999999999999999999999996555443
No 3
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=99.23 E-value=2.6e-12 Score=90.97 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCCCcCCCCC-CchHHHHHHHHHHHHHHhHHHHHHHHhh
Q 016089 4 PDLRRPFKRTA-ISDQQRRRELSLQRQSQNRRDAQQQARC 42 (395)
Q Consensus 4 h~~~~~~k~~~-~~~Q~~RR~~~Le~Qk~~R~d~~~~aR~ 42 (395)
|||+++||.++ +++|++||+++|++||++|+|++||||+
T Consensus 1 HPR~sqYK~k~~~~~q~~rRr~~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 1 HPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARR 40 (40)
T ss_dssp -CCGGGTTCCCCSCSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CccHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999996 7889998888999999999999999995
No 4
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=98.72 E-value=7.6e-08 Score=95.68 Aligned_cols=166 Identities=17% Similarity=0.320 Sum_probs=107.9
Q ss_pred CceEEEEecCCcEEEEEee-CCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEeeeeeec--CC----cE
Q 016089 116 HDWYVFARPAGKRCIVVSS-NGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHE--LD----QT 184 (395)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas-~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e--~~----~t 184 (395)
.+|++-.=.-|-|||+... .|.+..++++|..+. +||..---. ....-||||+-+.- .+ -+
T Consensus 63 ~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~~~~~--------~~~~~tvLDGElV~~~~~g~~~~~ 134 (343)
T 3rtx_A 63 KPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLR--------MHLSNTLLDGEMIIDKVNGQAVPR 134 (343)
T ss_dssp SCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEETTEEE--------EECCSEEEEEEEEEEESSSSEEEE
T ss_pred CCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcchhhh--------ccCCCeEEEEEEEEecCCCcEeeE
Confidence 5788888889999999888 899999999998763 576431100 01223999995542 22 38
Q ss_pred EEEEEEEeeCCcccccccchhhHHHhhhhcccc-----CCCCCCCCCCCCceeccccccCCh-HhHH-HHHhcCCCCccc
Q 016089 185 YYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET-----GACDAPSHYYKFRFSTVPVYNCDQ-RGLY-SAYIESVPYAKD 257 (395)
Q Consensus 185 yYVLDvl~W~g~~l~dceteFRffWl~SKl~E~-----~~~~~~s~~n~~~F~~lp~~~c~~-~~L~-~~~s~~~p~~~D 257 (395)
|+|.|+|.++|.++.+++..=|.--|..-+-+- ..........||.+..-++++.+. +.|. .-+........|
T Consensus 135 ~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~~~d 214 (343)
T 3rtx_A 135 YLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSHEMD 214 (343)
T ss_dssp EEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECCCEEGGGHHHHSCC----------C
T ss_pred EEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEEeEehhhHHHHHhhhhHhhcCCCCC
Confidence 999999999999999999999988876544320 000011234567666677777753 2222 122345667899
Q ss_pred cEEeEeccccccCCCCCCeeeeccC--CCccceee
Q 016089 258 GLLFYNKHAHYQTGNTPLALVWKDE--KCSQYVID 290 (395)
Q Consensus 258 GLLFYHKea~Y~~G~TPLv~~wKD~--~~s~y~~d 290 (395)
||+|.+.+ .|.+|.++-++=||.+ ++-.|.+-
T Consensus 215 GlIf~~~~-~Y~~G~~~~~lKwKp~~~~tvDF~l~ 248 (343)
T 3rtx_A 215 GLIFQPIG-KYKPGRCDDILKWKPPSLNSVDFRLK 248 (343)
T ss_dssp EEEEEESS-CCCCEEEEEEEEECCSTTCC------
T ss_pred eEEEEECc-cCcCCCCcceEEEecCcceEEEEEEE
Confidence 99999999 9999999999999995 77778774
No 5
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=98.61 E-value=7.2e-07 Score=87.85 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=147.7
Q ss_pred CceEEEEecCCcEEEEEee----CCeEEEEcCCCcEEE-eeccCCCCCCCCCCCCCCCCCcEEeeeeeecC--C--cEEE
Q 016089 116 HDWYVFARPAGKRCIVVSS----NGTTVSRERNGSILH-HFPSALPSGARTKDPSGSAQSYCILDCIFHEL--D--QTYY 186 (395)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas----~G~T~ay~k~G~~l~-~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~--~--~tyY 186 (395)
.+|++-.=.-|-||+++.. .|.+..++++|..+. .|+. ++.. ...-||||+-+.-. + -+||
T Consensus 75 ~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~-~~~~---------~~~~~vLDGElv~~~~~~~~~f~ 144 (330)
T 1ckm_A 75 NKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKN-IPRV---------LFQGSIFDGELCVDIVEKKFAFV 144 (330)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSC-CCTT---------GGGCEEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChh-hhhc---------cCCCeeEEEEEEEEcCCCeEEEE
Confidence 4799999999999999988 688999999998765 3432 2211 12249999966532 2 3899
Q ss_pred EEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCChHhHHHHHhcCCC--CccccEEeEec
Q 016089 187 VIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCDQRGLYSAYIESVP--YAKDGLLFYNK 264 (395)
Q Consensus 187 VLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~~~~L~~~~s~~~p--~~~DGLLFYHK 264 (395)
|.|+|.++|.++.+.+..=|.--|..-+.... .....++.+...+.++.+.+.+...+..... |..|||+|-+.
T Consensus 145 vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yg~EGlI~K~~ 220 (330)
T 1ckm_A 145 LFDAVVVSGVTVSQMDLASRFFAMKRSLKEFK----NVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSV 220 (330)
T ss_dssp EEEEEEETTEECTTSCHHHHHHHHHHHHTTCC----CCTTSSSEEEECCCEETTCHHHHHHHHHHHHHHSCEEEEEEEES
T ss_pred EEeeeeeCCcccccCCHHHHHHHHHHHHhhhc----ccCCCCeEEEEEEEEehhHHHHHHHHHHHHhccCCCceEEEeeC
Confidence 99999999999999998888888887774210 0112345556666666644444421122222 37999999999
Q ss_pred cccccCCCCCCeeeecc--CCCccceeecCCCCCccccceEEEEEccCCceeccCCCCeEEeecchhhhhhccccCeEEe
Q 016089 265 HAHYQTGNTPLALVWKD--EKCSQYVIDTDSKGQVLSQQQVVLELQEDGKLSTSDDPPVIFGCLDGEFIQKLEKSDLNYL 342 (395)
Q Consensus 265 ea~Y~~G~TPLv~~wKD--~~~s~y~~d~d~~g~~~~~q~vvL~~~~~g~l~T~D~~pv~~~~~~~~~~~~~~~~dl~~~ 342 (395)
++.|.+|.+.-++-||- .++-.|++-. ..| .+-|-...+|.+++.. ++..++ ..-.-.++.|.
T Consensus 221 dspY~~Gr~~~~lKwK~~~~~tvDfvi~~-g~g------~~gl~~~~~~~~vp~~-------~~~k~~-~~g~IvE~~~~ 285 (330)
T 1ckm_A 221 DEPVIYGRNFNLFKLKPGTHHTIDFIIMS-EDG------TIGIFDPNLRKNVPVG-------KLDGYY-NKGSIVECGFA 285 (330)
T ss_dssp SSCCCCEEEEEEEEECSTTCCCEEEEECS-TTC------CEEEEETTTTEEEECC-------CCSSCC-CTTCEEEEEEE
T ss_pred CCcccCCCccCeEEEEeCCCceEEEEEEc-cCC------eEEEEeCCCCceeeee-------eeehhh-cCCeEEEEEEE
Confidence 99999999988889997 6777777762 233 2333222223444332 221110 00011112221
Q ss_pred -ccC-----CccccCccchhHHHHHHhhhcCCcchhHHHhhc
Q 016089 343 -GKS-----NRARMFADSYSKVIFQYMVRHTPLKFDDLLASV 378 (395)
Q Consensus 343 -~~~-----~~~r~~aDs~ski~fq~~~r~~p~~i~~~~~~~ 378 (395)
|.- ..=+..||+++-+.==..+-..|||.++|+..+
T Consensus 286 ~G~wr~~R~R~DK~~~n~~~t~~~v~~si~~~vt~eeL~~~~ 327 (330)
T 1ckm_A 286 DGTWKYIQGRSDKNQANDRLTYEKTLLNIEENITIDELLDLF 327 (330)
T ss_dssp TTEEEEEEECTTCSSCCBHHHHHHHHHHHHHCCCHHHHTTCC
T ss_pred CCceEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCHHHHHHhh
Confidence 111 111235788776654445666899999999876
No 6
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=98.52 E-value=3.3e-07 Score=92.04 Aligned_cols=169 Identities=17% Similarity=0.292 Sum_probs=112.5
Q ss_pred CceEEEEecCCcEEEEEe-----eCCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEeeeeeecCC----
Q 016089 116 HDWYVFARPAGKRCIVVS-----SNGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHELD---- 182 (395)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVa-----s~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~~---- 182 (395)
.+|++-.=--|-||+++. ..|.+..++++|..+. +||...--.... .....-||||+-+.-.+
T Consensus 60 ~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~----~~~~~~~vLDGElV~~~~~~~ 135 (395)
T 1p16_A 60 KDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK----PTYHHGTLLDGELVLENRNVS 135 (395)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS----CCCCSSEEEEEEEEEECCSSS
T ss_pred CCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccch----hccCCcceeeeEEEEeccCCC
Confidence 578888888999999988 4467889999999864 676532111000 00122499998655322
Q ss_pred ---cEEEEEEEEeeCCcccccccchhhHHHhhhhcccc-CC-C---C--CCCCCCCCceeccccccCChHhHHHHHhc--
Q 016089 183 ---QTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET-GA-C---D--APSHYYKFRFSTVPVYNCDQRGLYSAYIE-- 250 (395)
Q Consensus 183 ---~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~-~~-~---~--~~s~~n~~~F~~lp~~~c~~~~L~~~~s~-- 250 (395)
-+|+|.|+|.++|.++.+.+..=|.--|..-+.+. .. + . ..+...+|.+..-++++.. .+..++..
T Consensus 136 ~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~~~~~~~--~~~~~~~~~~ 213 (395)
T 1p16_A 136 EPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFKTMLTSY--HADDVLSKMD 213 (395)
T ss_dssp CCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEECCCEEGG--GTHHHHTTGG
T ss_pred cceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEecchhHH--HHHHHHHHHH
Confidence 37999999999999999999988888887754221 00 0 0 0112234444444444443 23333332
Q ss_pred CCCCccccEEeEeccccccCCCCCCeeeecc--CCCccceee
Q 016089 251 SVPYAKDGLLFYNKHAHYQTGNTPLALVWKD--EKCSQYVID 290 (395)
Q Consensus 251 ~~p~~~DGLLFYHKea~Y~~G~TPLv~~wKD--~~~s~y~~d 290 (395)
......|||+|-..++.|.+|.+..++=||- .++-.|++-
T Consensus 214 ~~~~g~EGlI~K~~ds~Y~~Gr~~~wlKwK~~~~~TvDfvl~ 255 (395)
T 1p16_A 214 KLFHASDGLIYTCAETPYVFGTDQTLLKWKPAEENTVDFQLE 255 (395)
T ss_dssp GCSSCEEEEEEEESSSCCCSEEEEEEEEECCGGGCCEEEEEE
T ss_pred hcCCCCCeEEEEeCCCCcCCCCccceEEEecCCCeEEEEEEE
Confidence 3457799999999999999999998888885 567777654
No 7
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.2e-06 Score=90.23 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=114.7
Q ss_pred CceEEEEecCCcEEEEEee------CCeEEEEcCCCcEEE----eeccCCCCCCCCCCCCCCCCCcEEeeeeeecC----
Q 016089 116 HDWYVFARPAGKRCIVVSS------NGTTVSRERNGSILH----HFPSALPSGARTKDPSGSAQSYCILDCIFHEL---- 181 (395)
Q Consensus 116 ~~Wl~vpcPvGkRcLVVas------~G~T~ay~k~G~~l~----~F~S~LPgG~~~~~~~~~~~~ytILDCIy~e~---- 181 (395)
.+|++-.=--|.|||+... .|.+..++++|.... +||..-...... .-.....-||||+-+.-.
T Consensus 65 ~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~v~~~~FP~~~~~~~~~--~l~~~~~~TlLDGElV~d~~~~ 142 (461)
T 3kyh_C 65 HDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEE--LLETLQDGTLLDGELVIQTNPM 142 (461)
T ss_dssp SCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEEECCCCCCCCSSCCSSG--GGTCCCCSEEEEEEEEEEECTT
T ss_pred CCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEEcccccCCcccccchhh--hhhccCCCeEEEEEEEeccCCC
Confidence 6888888888999998876 378888999998763 676432110000 000123459999944421
Q ss_pred ----CcEEEEEEEEeeCCcccccccchhhHHHhhhhcccc--CCC--C-CCCCCCCCceeccccccC-ChHhHHHHHhcC
Q 016089 182 ----DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET--GAC--D-APSHYYKFRFSTVPVYNC-DQRGLYSAYIES 251 (395)
Q Consensus 182 ----~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~--~~~--~-~~s~~n~~~F~~lp~~~c-~~~~L~~~~s~~ 251 (395)
.-+|+|.|+|.++|..+.+++..=|.--|..-+.+. ..+ . ......||.+..-.++.+ ..+.|.. ....
T Consensus 143 ~~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~~~~pF~V~~K~~~~~~~~~~l~~-~~~~ 221 (461)
T 3kyh_C 143 TKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCTTFPFKISMKHMDFSYQLVKVAK-SLDK 221 (461)
T ss_dssp TCCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTCSCCCSEEEECCCEEGGGHHHHHH-HHTT
T ss_pred CCccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhccccccccCCcEEEeccchhhhhHHHHHH-hhhh
Confidence 127999999999999999999999998887665321 000 0 011234554444455454 2333333 2345
Q ss_pred CCCccccEEeEeccccccC-CCCCCeeeeccC--CCccceee
Q 016089 252 VPYAKDGLLFYNKHAHYQT-GNTPLALVWKDE--KCSQYVID 290 (395)
Q Consensus 252 ~p~~~DGLLFYHKea~Y~~-G~TPLv~~wKD~--~~s~y~~d 290 (395)
.....|||+|.+.++.|.+ |.+.-++=||.+ ++-.|++-
T Consensus 222 l~~~~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~nTVDF~L~ 263 (461)
T 3kyh_C 222 LPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDFKLI 263 (461)
T ss_dssp CSSCEEEEEEEESSSBCCSSSEEEEEEECCCTTTCCCEEEEE
T ss_pred ccCCCCeEEEEeCCCCCcCCCcCCCeEEEEcCCCeeEEEEEE
Confidence 7788999999999999999 688999999985 77677665
No 8
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.12 E-value=1.3e-05 Score=78.04 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=111.1
Q ss_pred hccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc------CCCCCCCCCCCCCCCCCcEE
Q 016089 101 LMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS------ALPSGARTKDPSGSAQSYCI 173 (395)
Q Consensus 101 LMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S------~LPgG~~~~~~~~~~~~ytI 173 (395)
.||+.-. ++|.-...+|++=.==-|-||++....|....+|++|..+. +||. .||.+ -+|
T Consensus 11 PmLA~~~-~~~~~~~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~~~l~~~------------~~i 77 (310)
T 1vs0_A 11 PMLATHG-TVAGLKASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADH------------HVV 77 (310)
T ss_dssp CCEEEEC-CCTTCCTTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHHHHTTTC------------EEE
T ss_pred CeECCCc-CCCccCCCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHHHhCCCc------------cEE
Confidence 5777766 46653356899988889999999999999999999998764 4542 24431 389
Q ss_pred eeeeeecC------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccc
Q 016089 174 LDCIFHEL------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVP 235 (395)
Q Consensus 174 LDCIy~e~------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp 235 (395)
|||=..-. .-+|||.|+|.++|.++.+-+..=|.--|.+-+.+. ++...|
T Consensus 78 LDGElv~~d~~g~~~F~~l~~r~~~~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~------------~i~~~~ 145 (310)
T 1vs0_A 78 LDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT------------SLTVPE 145 (310)
T ss_dssp EEEEEECBCTTSCBCHHHHHTCCTTSCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS------------CCCCCC
T ss_pred EeeEEEEECCCCCcCHHHHHhhccCCcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC------------cEEECc
Confidence 99844321 127999999999999999988888877776665431 233445
Q ss_pred cccCChHhHHHHHhcCCCCccccEEeEeccccccCC-CCCCeeeeccC
Q 016089 236 VYNCDQRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWKDE 282 (395)
Q Consensus 236 ~~~c~~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wKD~ 282 (395)
.+..+ +.+++.....--.+|+++-..++.|++| .|.-++=||-.
T Consensus 146 ~~~~~---~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~ 190 (310)
T 1vs0_A 146 LLPGD---GAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHW 190 (310)
T ss_dssp CCCSS---HHHHHHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESS
T ss_pred cCchH---HHHHHHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchh
Confidence 55544 3444433334458999999999999999 88777777754
No 9
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=97.83 E-value=6.2e-05 Score=79.42 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=108.3
Q ss_pred hccccccccCCC---CCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeecc-----------CCCCCCCCCCCCC
Q 016089 101 LMLPEWMIDVPD---RLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFPS-----------ALPSGARTKDPSG 166 (395)
Q Consensus 101 LMlsEWl~dvP~---dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~S-----------~LPgG~~~~~~~~ 166 (395)
-||++-..+++. .+..+|++=.==-|-||+|+...|....+||+|..+ |+. .+|++
T Consensus 229 PMLA~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~--~p~~~~~l~~~l~~~~~~~-------- 298 (579)
T 3l2p_A 229 PMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPV--LPHKVAHFKDYIPQAFPGG-------- 298 (579)
T ss_dssp CCEEEECCCHHHHHHHCTTCEEEEECCCSEEEEEEEETTEEEEECTTSCBC--CGGGTTTGGGTHHHHSTTC--------
T ss_pred CccCCcCCCHHHHHhhCCCCeEEEEccCcEEEEEEEECCEEEEECCCCCcc--ChhHHHHHHHHHHHhcCcC--------
Confidence 366666544433 234578766666699999999999999999999875 433 12332
Q ss_pred CCCCcEEeee---eeec---------------------CCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCC
Q 016089 167 SAQSYCILDC---IFHE---------------------LDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDA 222 (395)
Q Consensus 167 ~~~~ytILDC---Iy~e---------------------~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~ 222 (395)
.-+|||| +++. ..-+|||.|+|.++|.++.+-+..=|.--|.+-+.+.+
T Consensus 299 ---~~~iLDGElv~~d~~~g~~~~F~~L~~~~~~~~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~---- 371 (579)
T 3l2p_A 299 ---HSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIP---- 371 (579)
T ss_dssp ---SEEEEEEEEEEBCTTTCCBCCGGGGSHHHHHHCSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBT----
T ss_pred ---CceEEEeEEEEEeCCCCcccCHHHHHHHhhhhcccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCC----
Confidence 1289998 2221 13479999999999999999888888777766654421
Q ss_pred CCCCCCCceeccccccCC-hHhHHHHHhcCCCCccccEEeEeccccccCCCCCCeeeec
Q 016089 223 PSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTPLALVWK 280 (395)
Q Consensus 223 ~s~~n~~~F~~lp~~~c~-~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G~TPLv~~wK 280 (395)
-+|...|...++ .+.+.+.+.....--..|++.-+.++.|++|.. .|||
T Consensus 372 ------~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr---~WlK 421 (579)
T 3l2p_A 372 ------NRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR---HWLK 421 (579)
T ss_dssp ------TTEEECCEEEECSHHHHHHHHHHHHHTTCCCEEEEESSCCCCTTCE---EEEE
T ss_pred ------CeEEEeeeEEcCCHHHHHHHHHHHHHhCCCceEEecCcCCCCCCCe---eeEE
Confidence 245666655553 455666665544456899999999999999997 4666
No 10
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=97.83 E-value=2.4e-05 Score=82.11 Aligned_cols=155 Identities=17% Similarity=0.125 Sum_probs=112.5
Q ss_pred hccccccccCCCCCC--CceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eeccC-------CCCCCCCCCCCCCCCC
Q 016089 101 LMLPEWMIDVPDRLS--HDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPSA-------LPSGARTKDPSGSAQS 170 (395)
Q Consensus 101 LMlsEWl~dvP~dL~--~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S~-------LPgG~~~~~~~~~~~~ 170 (395)
-||++-...+|+.+. .+|++=+==-|-||+|+...|....+||+|..+. +||.. ||. +
T Consensus 228 PmLA~~~~~~~~~~~~~~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~------------~ 295 (558)
T 3gde_A 228 MMLAQVAESLESAVREMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKP------------G 295 (558)
T ss_dssp CCEEEECSCHHHHHHHSSSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHHBCS------------S
T ss_pred CeeCCcCCChHHHhhhccceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhhCCC------------C
Confidence 477766555664432 5788777777999999999999999999998765 34432 442 2
Q ss_pred cEEeee---eeecC-------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCC
Q 016089 171 YCILDC---IFHEL-------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDA 222 (395)
Q Consensus 171 ytILDC---Iy~e~-------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~ 222 (395)
+|||| ++... .-+|||.|+|.++| ++.+.+..=|.--|.+-+.+
T Consensus 296 -~iLDGElv~~~~g~~~~F~~L~~r~~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~------ 367 (558)
T 3gde_A 296 -VILDGEVIAVKEGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE------ 367 (558)
T ss_dssp -EEEEEEEEEEETTEEECHHHHHHHHHC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC------
T ss_pred -eEEEeEEEEcCCCcCCCHHHHHHHhccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC------
Confidence 99998 22110 12699999999999 99999888888877766642
Q ss_pred CCCCCCCceeccccccC-ChHhHHHHHhcCCCCccccEEeEeccccccCC-CCCCeeeec
Q 016089 223 PSHYYKFRFSTVPVYNC-DQRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWK 280 (395)
Q Consensus 223 ~s~~n~~~F~~lp~~~c-~~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wK 280 (395)
+-++...|.+.+ +.+.+...+.....--.+|+++-+.++.|++| .+.-|+=||
T Consensus 368 -----~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K 422 (558)
T 3gde_A 368 -----SEKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVK 422 (558)
T ss_dssp -----CSSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEE
T ss_pred -----CCeEEEeeeEecCCHHHHHHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEe
Confidence 124666777776 45666666655555568999999999999999 676666666
No 11
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=97.74 E-value=6.9e-05 Score=78.53 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=117.1
Q ss_pred ccccccccCCCC---CCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc-------CCCCCCCCCCCCCCCCC
Q 016089 102 MLPEWMIDVPDR---LSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS-------ALPSGARTKDPSGSAQS 170 (395)
Q Consensus 102 MlsEWl~dvP~d---L~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S-------~LPgG~~~~~~~~~~~~ 170 (395)
||+.-..++|+. ++.+|++=.==-|-||+++..+|....++|+|..+. +||. .||..
T Consensus 225 mLA~~~~~~~~~~~~~~~~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~l~~~------------ 292 (561)
T 2cfm_A 225 MLAQQAASIRDALLEMGGEAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEAIIPE------------ 292 (561)
T ss_dssp CEEEEESCHHHHHHHTTSCEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCSS------------
T ss_pred eeCCcCCChhHHHhhcCCcEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHhCCCc------------
Confidence 676665555432 344899888889999999999999999999998765 4554 34521
Q ss_pred cEEeeeeeecC-----------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCC
Q 016089 171 YCILDCIFHEL-----------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACD 221 (395)
Q Consensus 171 ytILDCIy~e~-----------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~ 221 (395)
-+||||=..-. .-.|||.|+|.++|.++.+.+..=|.--|.+-+.+.
T Consensus 293 ~~iLDGElv~~d~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~---- 368 (561)
T 2cfm_A 293 KAIVEGELVAIGENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN---- 368 (561)
T ss_dssp EEEEEEEEEEBCTTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC----
T ss_pred ceEeeeEEEEEcCCCcccCHHHHHHHhhcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC----
Confidence 28999833211 126999999999999999988888887777666431
Q ss_pred CCCCCCCCceeccccccCC-hHhHHHHHhcCCCCccccEEeEeccccccCC-CCCCeeeeccCC
Q 016089 222 APSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTG-NTPLALVWKDEK 283 (395)
Q Consensus 222 ~~s~~n~~~F~~lp~~~c~-~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G-~TPLv~~wKD~~ 283 (395)
-++...|.+.++ .+.+...+.....--.+|+++-..++.|++| .+.-|+=||-..
T Consensus 369 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~ 425 (561)
T 2cfm_A 369 -------EKIKVAENLITKKVEEAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM 425 (561)
T ss_dssp -------SSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC
T ss_pred -------CcEEEeeeEEcCCHHHHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC
Confidence 246667777774 5567776665555668999999999999999 677776777543
No 12
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=97.63 E-value=0.00014 Score=77.27 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=118.9
Q ss_pred hccccccccCCCC---CCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEE-eecc-------CCCCCCCCCCCCCCCC
Q 016089 101 LMLPEWMIDVPDR---LSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILH-HFPS-------ALPSGARTKDPSGSAQ 169 (395)
Q Consensus 101 LMlsEWl~dvP~d---L~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~-~F~S-------~LPgG~~~~~~~~~~~ 169 (395)
.||+.-...+|+. +..+|++=.==-|-||+|+...|....++|+|..+. +||. .||..
T Consensus 255 PmLA~~~~~~~~~l~~~~~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~~l~~~----------- 323 (621)
T 2hiv_A 255 PMLAERLSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGK----------- 323 (621)
T ss_dssp CCEEEECSCHHHHHHHTTTCEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHHBCCS-----------
T ss_pred CeeCCccCchhHHHhhcCCcEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHHhCCCc-----------
Confidence 4777666555543 344898888788999999999999999999998765 4654 45521
Q ss_pred CcEEeeeeeecC-----------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCC
Q 016089 170 SYCILDCIFHEL-----------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGAC 220 (395)
Q Consensus 170 ~ytILDCIy~e~-----------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~ 220 (395)
-+||||=..-. .-+|||.|+|.++|.++.+-+..=|.--|.+-+.+.
T Consensus 324 -~~iLDGElv~~d~~~g~~l~F~~L~~r~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~--- 399 (621)
T 2hiv_A 324 -EFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN--- 399 (621)
T ss_dssp -SEEEEEEEEEBCTTTCCBCCTHHHHHHHHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC---
T ss_pred -CeEEeEEEEEeecCCCCcCCHHHHhhhccccchhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC---
Confidence 28999833211 125999999999999999988888888777766541
Q ss_pred CCCCCCCCCceeccccccCC-hHhHHHHHhcCCCCccccEEeEec--cccccCC-CCCCeeeeccCC
Q 016089 221 DAPSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNK--HAHYQTG-NTPLALVWKDEK 283 (395)
Q Consensus 221 ~~~s~~n~~~F~~lp~~~c~-~~~L~~~~s~~~p~~~DGLLFYHK--ea~Y~~G-~TPLv~~wKD~~ 283 (395)
-++...|.+.++ .+.+.+.+.....--.+|+++-.. ++.|++| .+.-|+=||-..
T Consensus 400 --------~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~ 458 (621)
T 2hiv_A 400 --------DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDY 458 (621)
T ss_dssp --------SSEEECCEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTC
T ss_pred --------CcEEEeeeEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechh
Confidence 245667777764 556777666555566899999999 9999999 677777777655
No 13
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=97.61 E-value=0.00017 Score=77.51 Aligned_cols=165 Identities=18% Similarity=0.172 Sum_probs=113.1
Q ss_pred hccccccccCCCC---C-CCceEEEEecCCcEEEEEe-eCCeEEEEcCCCcEEE-eecc---CCCCCCCCCCCCCCCCCc
Q 016089 101 LMLPEWMIDVPDR---L-SHDWYVFARPAGKRCIVVS-SNGTTVSRERNGSILH-HFPS---ALPSGARTKDPSGSAQSY 171 (395)
Q Consensus 101 LMlsEWl~dvP~d---L-~~~Wl~vpcPvGkRcLVVa-s~G~T~ay~k~G~~l~-~F~S---~LPgG~~~~~~~~~~~~y 171 (395)
.||+.-..++|+. + ..+|++=.==-|-||+|+. .+|....+||+|..+. +|+- .++.--. .+..-
T Consensus 311 PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d~t~~fPel~~~l~~~~~------~~~~~ 384 (688)
T 1x9n_A 311 PMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKL------PSVTS 384 (688)
T ss_dssp CCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGGBC------TTCCC
T ss_pred CccCCccCCHHHHHhhcCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCcccccchHHHHHHHHhhc------cCCCC
Confidence 5666655444331 2 2478888877899999999 5788999999998765 4542 1221000 00123
Q ss_pred EEeeeee---ecC-------------------------CcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCC
Q 016089 172 CILDCIF---HEL-------------------------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAP 223 (395)
Q Consensus 172 tILDCIy---~e~-------------------------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~ 223 (395)
+||||=. +.. .-.|||.|||.++|.++.+-+..=|.--|..-+.+.+
T Consensus 385 ~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~----- 459 (688)
T 1x9n_A 385 FILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETE----- 459 (688)
T ss_dssp EEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBT-----
T ss_pred eEEeEEEEEEeCCCCCcCCHHHHHHHhhcccchhhcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCC-----
Confidence 8999733 221 1379999999999999999888888777776665421
Q ss_pred CCCCCCceeccccccCC-hHhHHHHHhcCCCCccccEEeEec--cccccCC-CCCCeeeecc
Q 016089 224 SHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYAKDGLLFYNK--HAHYQTG-NTPLALVWKD 281 (395)
Q Consensus 224 s~~n~~~F~~lp~~~c~-~~~L~~~~s~~~p~~~DGLLFYHK--ea~Y~~G-~TPLv~~wKD 281 (395)
-++...+.+.++ .+.+...+.....--.+||++-+. ++.|++| .+.-|+=||-
T Consensus 460 -----~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs~~WlK~K~ 516 (688)
T 1x9n_A 460 -----GEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKK 516 (688)
T ss_dssp -----TTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEH
T ss_pred -----CcEEEEeeEecCCHHHHHHHHHHHHhcCCceeEEeecccCCCCCCCCcCchHheeeh
Confidence 246667777764 556666665555556899999999 9999997 6776666664
No 14
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=97.31 E-value=0.00095 Score=57.91 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCcEEEEEeeCCeEEEEcCCCcEEE-eeccCCCCCCC---CCCCCCCCCCcEEeee---eeecC----------------
Q 016089 125 AGKRCIVVSSNGTTVSRERNGSILH-HFPSALPSGAR---TKDPSGSAQSYCILDC---IFHEL---------------- 181 (395)
Q Consensus 125 vGkRcLVVas~G~T~ay~k~G~~l~-~F~S~LPgG~~---~~~~~~~~~~ytILDC---Iy~e~---------------- 181 (395)
-|-||++....|....+|++|.-+. +||-..-.|.- -...-..+-.-+|||| ++++.
T Consensus 8 DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~~~~~~~~~iLDGEiv~~d~~~~~f~~~~~~~~~~~~ 87 (139)
T 3vnn_A 8 DGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRM 87 (139)
T ss_dssp CCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSCCCTTCCEEEEEEEEEEEETTTTEECCC---------
T ss_pred CeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHHHhccCCceEeeeEEEEecCCCCCHHHHHhhhhhhhh
Confidence 3899999999999999999998764 46532100000 0000000112389998 22211
Q ss_pred ------CcEEEEEEEEeeCCcccccccchhhHHHhhhhcccc
Q 016089 182 ------DQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAET 217 (395)
Q Consensus 182 ------~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~ 217 (395)
.-+|||.|+|.++|.++.+.+..=|---|.+-+.+.
T Consensus 88 ~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~ 129 (139)
T 3vnn_A 88 VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPI 129 (139)
T ss_dssp ----CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCB
T ss_pred hhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcC
Confidence 127899999999999999999888887777766553
No 15
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=97.11 E-value=0.0012 Score=64.85 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=63.2
Q ss_pred EEEEEEEEeeC----Cccc---ccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC-hHhHHHHHhcCCCCc
Q 016089 184 TYYVIDMVCWR----GYSL---YDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD-QRGLYSAYIESVPYA 255 (395)
Q Consensus 184 tyYVLDvl~W~----g~~l---~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~-~~~L~~~~s~~~p~~ 255 (395)
+|||.|||..+ |.++ .+-+..=|.--|.+-+...+ .-.+...|.+.++ .+.+.+++.....--
T Consensus 144 ~~~vFDll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 214 (348)
T 1a0i_A 144 HIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFP---------EIEWQAAESYEVYDMVELQQLYEQKRAEG 214 (348)
T ss_dssp EEEEEEEEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCT---------TSEEEECCEEEESSHHHHHHHHHHHHTTT
T ss_pred EEEEEeeEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCC---------CCeEEEeccEecCCHHHHHHHHHHHHHcC
Confidence 69999999999 8877 55555555555555433211 1256778888875 466777776666666
Q ss_pred cccEEeEeccccccCCCCCCeeeeccCC
Q 016089 256 KDGLLFYNKHAHYQTGNTPLALVWKDEK 283 (395)
Q Consensus 256 ~DGLLFYHKea~Y~~G~TPLv~~wKD~~ 283 (395)
.+|+++-..++.|++|.+.-++=||...
T Consensus 215 ~EGlv~K~~ds~Y~~Grr~~wlK~K~~~ 242 (348)
T 1a0i_A 215 HEGLIVKDPMCIYKRGKKSGWWKMKPEN 242 (348)
T ss_dssp CCCEEEECTTCEECSEEEEEEEEESCCE
T ss_pred CceEEEeCCCCCCCCCCccCcEEEeecc
Confidence 8999999999999999765333444333
No 16
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=96.83 E-value=0.0011 Score=63.99 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=99.2
Q ss_pred hccccccccCCCCCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEEEeec------cCCCCCCCCCCCCCCCCCcEEe
Q 016089 101 LMLPEWMIDVPDRLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSILHHFP------SALPSGARTKDPSGSAQSYCIL 174 (395)
Q Consensus 101 LMlsEWl~dvP~dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l~~F~------S~LPgG~~~~~~~~~~~~ytIL 174 (395)
-||+.-...+|+ ...+|++=+==-|-||++ +| ..+|++|..+.. | ..++ -+||
T Consensus 5 PmLA~~~~~~~~-~~~~~~~E~K~DG~R~~~---~g--~l~SR~g~~~t~-p~l~~~~~~~~--------------~~iL 63 (297)
T 1fvi_A 5 PLLAATLENIED-VQFPCLATPKIAGIRSVK---QT--QMLSRTFKPIRN-SVMNRLLTELL--------------PEGS 63 (297)
T ss_dssp CCBCEECCCGGG-CCSSEEEEECCCSEEEEE---SS--SEECTTSCBCSC-HHHHHHHHHHS--------------CTTE
T ss_pred ceeCCccCcCcC-CCCcEEEEeeEeeeeEEe---cC--EEECCCCcccCc-HHHHHHHHhcC--------------CeeE
Confidence 467766655544 236788877778999998 77 899999998752 2 1111 1789
Q ss_pred eeeee--------------------cCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceecc
Q 016089 175 DCIFH--------------------ELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTV 234 (395)
Q Consensus 175 DCIy~--------------------e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~l 234 (395)
|+=.. ...-+|||.|+|..+ .+-+..=|.--|.+-+.+.+. ....-.+..+
T Consensus 64 DGElv~~~~~F~~l~~~~~~~~~~~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~-----~~~~~~i~~~ 134 (297)
T 1fvi_A 64 DGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPH-----ILEHAQVKII 134 (297)
T ss_dssp EEEEECTTSCHHHHHHHHHSCC----CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGG-----GGGCSSEEEE
T ss_pred EEEEEECCCCHHHHHHHhccCCCCCccceEEEEEeccCCC----CCCCHHHHHHHHHHHHhhcCC-----ccccceEEEc
Confidence 98443 123479999999776 333444455555444433211 0000145566
Q ss_pred c--cccCC-hHhHHHHHhcCCCCccccEEeEeccccccCCCCC----CeeeeccCC
Q 016089 235 P--VYNCD-QRGLYSAYIESVPYAKDGLLFYNKHAHYQTGNTP----LALVWKDEK 283 (395)
Q Consensus 235 p--~~~c~-~~~L~~~~s~~~p~~~DGLLFYHKea~Y~~G~TP----Lv~~wKD~~ 283 (395)
| .+.++ .+.+.+++.....--.+|+++-..++.|++|.+. -++=||...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~ds~Y~~GRs~~~~g~wlK~K~~~ 190 (297)
T 1fvi_A 135 PLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFK 190 (297)
T ss_dssp ECCCEEECSHHHHHHHHHHHHHTTCCSEEEECTTCCCCSSBCCTTTTSSEEECCCE
T ss_pred CcceEecCCHHHHHHHHHHHHHCCCcEEEEECCCCCcCCCCCCCCCCCeEEECCCC
Confidence 6 77764 5667776655555568999999999999999888 777777543
No 17
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=77.62 E-value=2.3 Score=34.68 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCcEEEEEeeCC------eEEEEcCCCcEEEeeccCCCCCCC
Q 016089 125 AGKRCIVVSSNG------TTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 125 vGkRcLVVas~G------~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
.||||.-|...| .|...-.+|-...+|.++||+-.-
T Consensus 39 lGKrvayv~~~g~~iwGKVtr~HGnsGvVrAkF~~nLP~~a~ 80 (87)
T 3j21_c 39 IGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (87)
T ss_dssp TTCEEEECCSSSCCEEEEEEEECCSSSCEEEEESSCCCSSCS
T ss_pred cCceEEEEeCCCCEEEEEEEeeeCCCCeEEEEeCCCCChHHc
Confidence 577777776655 355667799999999999998643
No 18
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=60.92 E-value=9 Score=32.57 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=27.6
Q ss_pred CCcEEEEEe--e--CC---------eEEEEcCCCcEEEeeccCCCCCCC
Q 016089 125 AGKRCIVVS--S--NG---------TTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 125 vGkRcLVVa--s--~G---------~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
+||||.-|. . +| .|...-.+|-+..+|.++||+-.-
T Consensus 52 lGKrvayvykak~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA~ 100 (113)
T 4a18_H 52 QGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNGVAVARFAHNLPPQAI 100 (113)
T ss_dssp TTCEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEEESSCCCGGGG
T ss_pred cCCeEEEEEecCCCCCCeEEEEEEEEEeeeCCCCeEEEEeCCCCChHHc
Confidence 699998864 2 23 355677799999999999998643
No 19
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=56.06 E-value=9.7 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCcEEEEEeeC-----C-eEEEEcCCCcEEEeeccCCCCCCC
Q 016089 125 AGKRCIVVSSN-----G-TTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 125 vGkRcLVVas~-----G-~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
+||||.-|..- | .|..--.+|-+..+|.++||+-+-
T Consensus 39 lGKrvayvyka~rviwGKVtR~HGnsGvVrAkF~~nLP~kA~ 80 (95)
T 1sqr_A 39 IGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPGQAL 80 (95)
T ss_dssp TTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCSSSCT
T ss_pred cCCeEEEEECCCCEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 58888877643 3 255567799999999999999654
No 20
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=48.43 E-value=4.7 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=28.7
Q ss_pred cCCcEEEEEeeCCeEEEEcCCCcEEEeeccC
Q 016089 124 PAGKRCIVVSSNGTTVSRERNGSILHHFPSA 154 (395)
Q Consensus 124 PvGkRcLVVas~G~T~ay~k~G~~l~~F~S~ 154 (395)
=+|+|+.|.|.+|.-+...+.|.+...|||.
T Consensus 23 ~vG~~V~l~An~GRkK~~er~GvL~etYPSv 53 (90)
T 3fb9_A 23 HEGQVVEMTLENGRKRQKNRLGKLIEVYPSL 53 (90)
T ss_dssp TTTSEEEEEECCSSSCCSCEEEEEEEECSSE
T ss_pred cCCCEEEEEecCCcccEEEEEEEEEEecCcE
Confidence 4799999999999999999999999999875
No 21
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=45.94 E-value=32 Score=34.49 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCceEEEEecCCcEEEEEeeCCeEEEEcCCCcEE-----------E-eeccCCCCCCCCCCCCCCCCCcEEeeee---
Q 016089 113 RLSHDWYVFARPAGKRCIVVSSNGTTVSRERNGSIL-----------H-HFPSALPSGARTKDPSGSAQSYCILDCI--- 177 (395)
Q Consensus 113 dL~~~Wl~vpcPvGkRcLVVas~G~T~ay~k~G~~l-----------~-~F~S~LPgG~~~~~~~~~~~~ytILDCI--- 177 (395)
.+..+|+|--==-|-++-++.-+|...++|++|++. . .|...+|+ .+||+=
T Consensus 70 ~f~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~icP~tT~r~~~~~~~~f~~~~P~--------------l~LdGEl~g 135 (370)
T 3qwu_A 70 QFEAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFICPFTTDRLPDLIDLRILDENPD--------------LVICAEVAG 135 (370)
T ss_dssp HCSSCEEEEEECSSEEEEEEEETTEEEEECTTSCBCHHHHHHHHHHCCCHHHHHCTT--------------EEEEEEEEC
T ss_pred cCCCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcccCcchhhhhhhcCchhhhcCCC--------------eEEEEEEEc
Confidence 345688888777899999989999999999999872 2 35555553 566661
Q ss_pred -----------eecCCcEEEEEEEEeeCCcccccccchhhHHHhhhhccccCCCCCCCCCCCCceeccccccCC---hHh
Q 016089 178 -----------FHELDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGACDAPSHYYKFRFSTVPVYNCD---QRG 243 (395)
Q Consensus 178 -----------y~e~~~tyYVLDvl~W~g~~l~dceteFRffWl~SKl~E~~~~~~~s~~n~~~F~~lp~~~c~---~~~ 243 (395)
|.-..-+|||.||..-.+.-.. ..+=|.-| +++.+. + ....+..+++. .+.
T Consensus 136 ~~npy~~~s~~y~~~~i~F~VFDV~d~~~~~~L--~~~eR~~l----l~~~~l--------p-~V~ii~~~~~~~~~~~~ 200 (370)
T 3qwu_A 136 PENPYIEESPPYVKEDVQLFVFDFMKKNEQGFL--SQEEKMEL----IEKYNL--------P-HVEILGRFTASEEGIKK 200 (370)
T ss_dssp TTCSSCSCCCTTCCSSCEEEEEEEEETTCCSCC--CHHHHHHH----HHHHTC--------C-BCCEEEEECSSHHHHHH
T ss_pred CCCCccccCCcccccCceEEEEeCccccCCCcC--CHHHHHHH----HHHCCC--------C-CccEEEEeCCCCCCHHH
Confidence 1123569999999974321000 12223333 222221 0 11234445665 344
Q ss_pred HHHHHhcCCCCccccEEeEecc-----ccccCCCC
Q 016089 244 LYSAYIESVPYAKDGLLFYNKH-----AHYQTGNT 273 (395)
Q Consensus 244 L~~~~s~~~p~~~DGLLFYHKe-----a~Y~~G~T 273 (395)
+.+++..-.---..|+++=..+ +.|+.+.|
T Consensus 201 l~~~l~~l~~~g~EGVVlK~~~~~~~~~KY~t~~s 235 (370)
T 3qwu_A 201 IKEILKRFNEEGREGVVFKEDSERNKRAKYITSYA 235 (370)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSSSCCEEEEECHHH
T ss_pred HHHHHHHHHhCCCcEEEEecCccCCCceeeecCCC
Confidence 5555431111246788877776 45665544
No 22
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=42.85 E-value=16 Score=31.00 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=26.7
Q ss_pred CCcEEEEEee-------------CC-eEEEEcCCCcEEEeeccCCCCCCC
Q 016089 125 AGKRCIVVSS-------------NG-TTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 125 vGkRcLVVas-------------~G-~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
.||||.-|.. .| .|...-.+|-...+|.++||+-+-
T Consensus 49 lGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~ 98 (111)
T 3iz5_j 49 AGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98 (111)
T ss_dssp SCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCSTTCC
T ss_pred cCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCChHHc
Confidence 5888877642 13 355667789999999999999654
No 23
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=32.26 E-value=14 Score=31.12 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=19.1
Q ss_pred eEEEEcCCCcEEEeeccCCCCCCC
Q 016089 137 TTVSRERNGSILHHFPSALPSGAR 160 (395)
Q Consensus 137 ~T~ay~k~G~~l~~F~S~LPgG~~ 160 (395)
.|...-.+|-+..+|.++||+-.-
T Consensus 71 VtR~HGnsGvVrAkF~~nLP~kA~ 94 (107)
T 3izc_j 71 VTRTHGNSGVVRATFRNNLPAKTF 94 (107)
T ss_dssp EEECSSSSSCEEECCCSCCSTTCC
T ss_pred EEeeeCCCCeEEEEeCCCCChHHc
Confidence 355566789999999999999654
No 24
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=27.55 E-value=23 Score=28.57 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=11.9
Q ss_pred CCCceEEEEecCCc
Q 016089 114 LSHDWYVFARPAGK 127 (395)
Q Consensus 114 L~~~Wl~vpcPvGk 127 (395)
|+..|++|||-.|+
T Consensus 9 fg~~~vvVPC~dg~ 22 (85)
T 2ns5_A 9 FGRTRVDVPCGDGR 22 (85)
T ss_dssp ETTEEEEEEESSSC
T ss_pred ECCEEEEEECCCCc
Confidence 57899999998884
No 25
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=22.94 E-value=1.3e+02 Score=23.14 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=19.2
Q ss_pred EeeeeeecCCcEEEEEEEEeeCCccccccc
Q 016089 173 ILDCIFHELDQTYYVIDMVCWRGYSLYDCT 202 (395)
Q Consensus 173 ILDCIy~e~~~tyYVLDvl~W~g~~l~dce 202 (395)
|||.-......+.| .+.|+|++..+|+
T Consensus 19 Il~~r~~~~g~~~Y---lVKWkGy~~~~~T 45 (78)
T 2dnt_A 19 IVDKRKNKKGKTEY---LVRWKGYDSEDDT 45 (78)
T ss_dssp EEEEEECTTSCEEE---EECBTTBCGGGCE
T ss_pred EEEEEEcCCCcEEE---EEEECCCCccCCc
Confidence 78876654456667 5799999876653
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=21.16 E-value=5.3 Score=40.05 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=8.8
Q ss_pred CCCCCCcCCCCCCchHH---HHHHHHHHHHHHhHHHHHHHHhhhh
Q 016089 3 PPDLRRPFKRTAISDQQ---RRRELSLQRQSQNRRDAQQQARCLA 44 (395)
Q Consensus 3 ph~~~~~~k~~~~~~Q~---~RR~~~Le~Qk~~R~d~~~~aR~La 44 (395)
|-.|+..||.++....+ +|++..+|..|+||.+.+..-|++.
T Consensus 10 ~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~ 54 (529)
T 3tpo_A 10 PAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVS 54 (529)
T ss_dssp ----------------------------------CCSCSCCCCCC
T ss_pred cHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCC
Confidence 44588999988752222 2224678888999999988878764
Done!