Query 016090
Match_columns 395
No_of_seqs 211 out of 469
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_B Transcription factor E2 100.0 1.4E-37 4.8E-42 262.8 10.4 102 144-252 4-105 (106)
2 1cf7_A Protein (transcription 100.0 6.9E-30 2.4E-34 204.5 5.8 73 65-137 2-75 (76)
3 1cf7_B Protein (transcription 99.3 1E-12 3.4E-17 109.5 3.9 66 71-139 8-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 93.3 0.061 2.1E-06 41.3 3.4 44 80-124 13-56 (59)
5 1oyi_A Double-stranded RNA-bin 93.1 0.083 2.8E-06 42.7 4.1 61 72-135 12-72 (82)
6 1qgp_A Protein (double strande 92.7 0.085 2.9E-06 41.2 3.6 55 80-134 17-72 (77)
7 1qbj_A Protein (double-strande 92.0 0.13 4.4E-06 40.9 3.8 56 79-134 12-68 (81)
8 2heo_A Z-DNA binding protein 1 91.7 0.14 4.9E-06 38.6 3.7 53 78-131 11-63 (67)
9 1r7j_A Conserved hypothetical 91.1 0.41 1.4E-05 38.6 5.9 46 77-126 8-53 (95)
10 2oqg_A Possible transcriptiona 89.9 1.6 5.5E-05 34.3 8.4 47 81-130 25-71 (114)
11 3deu_A Transcriptional regulat 89.1 1.4 5E-05 37.3 8.1 37 91-127 66-102 (166)
12 3r0a_A Putative transcriptiona 89.1 0.51 1.7E-05 39.0 5.1 47 80-126 29-75 (123)
13 2htj_A P fimbrial regulatory p 88.4 0.42 1.4E-05 36.5 3.9 44 80-125 3-46 (81)
14 3jw4_A Transcriptional regulat 88.3 1.7 5.9E-05 35.4 7.8 46 82-127 46-91 (148)
15 3eco_A MEPR; mutlidrug efflux 87.7 1.2 4.2E-05 35.7 6.5 46 81-126 35-80 (139)
16 2gxg_A 146AA long hypothetical 84.6 1.4 4.9E-05 35.4 5.3 36 91-126 48-83 (146)
17 1ku9_A Hypothetical protein MJ 84.5 5.6 0.00019 31.7 8.8 45 81-126 30-74 (152)
18 1y0u_A Arsenical resistance op 84.3 0.67 2.3E-05 36.2 3.1 48 81-133 35-82 (96)
19 2kko_A Possible transcriptiona 83.7 0.64 2.2E-05 37.4 2.8 47 81-130 29-75 (108)
20 2a61_A Transcriptional regulat 83.7 1.6 5.4E-05 35.1 5.2 44 82-127 38-81 (145)
21 3qph_A TRMB, A global transcri 83.1 0.28 9.5E-06 47.9 0.5 51 82-135 24-74 (342)
22 3cuo_A Uncharacterized HTH-typ 82.8 0.89 3E-05 34.7 3.2 46 82-129 29-74 (99)
23 2y75_A HTH-type transcriptiona 82.3 1.3 4.4E-05 36.3 4.2 46 81-126 13-59 (129)
24 3bro_A Transcriptional regulat 82.2 0.99 3.4E-05 36.2 3.4 47 81-127 38-84 (141)
25 1sfx_A Conserved hypothetical 82.1 0.8 2.7E-05 35.0 2.7 45 81-127 24-68 (109)
26 2d1h_A ST1889, 109AA long hypo 82.1 0.65 2.2E-05 35.6 2.2 38 91-128 34-71 (109)
27 1on2_A Transcriptional regulat 80.9 1.3 4.4E-05 36.3 3.7 38 91-128 20-57 (142)
28 2fu4_A Ferric uptake regulatio 80.8 0.8 2.7E-05 34.7 2.3 47 81-127 21-72 (83)
29 1sfu_A 34L protein; protein/Z- 79.3 1.1 3.7E-05 35.8 2.6 61 72-134 10-70 (75)
30 1j5y_A Transcriptional regulat 79.1 1.6 5.6E-05 38.3 4.1 52 81-134 25-77 (187)
31 2dk5_A DNA-directed RNA polyme 78.8 1.9 6.5E-05 34.7 4.0 47 80-126 23-69 (91)
32 2hr3_A Probable transcriptiona 78.3 2.4 8.1E-05 34.2 4.5 44 82-126 40-83 (147)
33 3rkx_A Biotin-[acetyl-COA-carb 78.3 1.8 6.1E-05 41.9 4.4 57 79-135 5-62 (323)
34 3s2w_A Transcriptional regulat 78.3 9.9 0.00034 31.3 8.4 37 91-127 62-98 (159)
35 1s3j_A YUSO protein; structura 78.2 2.4 8.2E-05 34.5 4.6 44 82-127 42-85 (155)
36 3f6o_A Probable transcriptiona 77.8 2.7 9.3E-05 34.0 4.7 47 81-130 22-68 (118)
37 3u2r_A Regulatory protein MARR 77.8 2.2 7.5E-05 35.7 4.3 46 82-127 51-96 (168)
38 2frh_A SARA, staphylococcal ac 77.7 1.6 5.6E-05 35.4 3.4 45 82-126 42-86 (127)
39 1lj9_A Transcriptional regulat 77.2 5.1 0.00018 32.1 6.2 43 82-126 34-76 (144)
40 3nrv_A Putative transcriptiona 76.8 3.6 0.00012 33.3 5.2 43 82-126 45-87 (148)
41 2fa5_A Transcriptional regulat 76.6 8.9 0.0003 31.4 7.6 37 91-127 61-97 (162)
42 3mq0_A Transcriptional repress 76.3 2.7 9.1E-05 39.3 4.8 49 82-131 35-83 (275)
43 1r1u_A CZRA, repressor protein 76.0 1.5 5.2E-05 34.8 2.7 46 81-129 30-75 (106)
44 2eth_A Transcriptional regulat 75.4 3.1 0.0001 34.2 4.5 35 92-126 57-91 (154)
45 2bv6_A MGRA, HTH-type transcri 75.4 0.66 2.3E-05 37.5 0.4 37 91-127 49-85 (142)
46 3bpv_A Transcriptional regulat 75.3 2.8 9.5E-05 33.3 4.1 43 82-126 34-76 (138)
47 1ub9_A Hypothetical protein PH 75.1 1.5 5.1E-05 33.4 2.3 44 82-127 21-64 (100)
48 3tgn_A ADC operon repressor AD 75.1 4.5 0.00015 32.5 5.3 44 81-127 42-85 (146)
49 3jth_A Transcription activator 75.0 1.9 6.4E-05 33.4 2.9 38 92-129 35-72 (98)
50 2fsw_A PG_0823 protein; alpha- 75.0 0.55 1.9E-05 37.6 -0.2 58 67-127 11-73 (107)
51 2p4w_A Transcriptional regulat 74.7 17 0.00058 32.8 9.5 44 81-127 19-62 (202)
52 2pg4_A Uncharacterized protein 74.6 2.1 7.1E-05 33.2 3.0 52 72-124 8-62 (95)
53 2fbh_A Transcriptional regulat 74.4 7 0.00024 31.2 6.3 38 90-127 49-86 (146)
54 3k0l_A Repressor protein; heli 74.2 2.3 7.7E-05 35.4 3.4 37 91-127 58-94 (162)
55 3bj6_A Transcriptional regulat 74.1 2.9 9.9E-05 33.9 3.9 36 92-127 53-88 (152)
56 2f2e_A PA1607; transcription f 73.9 1 3.6E-05 38.3 1.2 57 68-127 11-71 (146)
57 2hzt_A Putative HTH-type trans 73.6 2.3 7.8E-05 34.0 3.1 37 91-127 25-62 (107)
58 3pfi_A Holliday junction ATP-d 73.3 2.3 7.9E-05 39.3 3.5 55 75-129 261-316 (338)
59 3mkl_A HTH-type transcriptiona 73.1 2.8 9.7E-05 33.7 3.6 39 78-116 8-46 (120)
60 2lkp_A Transcriptional regulat 73.0 2.5 8.4E-05 33.8 3.2 36 92-127 44-79 (119)
61 4b8x_A SCO5413, possible MARR- 72.7 1.7 6E-05 36.2 2.3 45 83-127 41-85 (147)
62 2jt1_A PEFI protein; solution 72.5 2.3 7.9E-05 33.4 2.9 47 80-126 7-57 (77)
63 1xn7_A Hypothetical protein YH 72.0 2.7 9.4E-05 33.0 3.2 45 80-126 5-49 (78)
64 3pqk_A Biofilm growth-associat 71.9 2.8 9.5E-05 32.8 3.2 45 82-129 28-72 (102)
65 2x4h_A Hypothetical protein SS 71.9 4.1 0.00014 33.0 4.4 38 90-127 28-65 (139)
66 3hsr_A HTH-type transcriptiona 71.9 1.4 4.9E-05 35.8 1.6 39 89-127 46-84 (140)
67 2cfx_A HTH-type transcriptiona 71.2 2.8 9.5E-05 35.0 3.2 48 77-126 5-52 (144)
68 3f6v_A Possible transcriptiona 71.2 3.4 0.00012 35.6 3.9 51 81-134 62-112 (151)
69 1z7u_A Hypothetical protein EF 71.1 22 0.00075 28.4 8.5 36 92-127 34-70 (112)
70 1u2w_A CADC repressor, cadmium 70.8 2.5 8.5E-05 34.6 2.8 46 81-128 46-91 (122)
71 3oou_A LIN2118 protein; protei 70.5 3.1 0.00011 32.8 3.2 43 78-120 6-48 (108)
72 2dbb_A Putative HTH-type trans 70.4 2.8 9.6E-05 35.0 3.1 50 75-126 7-56 (151)
73 1a93_B MAX protein, coiled coi 70.2 6.1 0.00021 27.3 4.1 30 143-172 4-33 (34)
74 1i1g_A Transcriptional regulat 70.2 3.2 0.00011 34.0 3.3 45 80-126 7-51 (141)
75 2k02_A Ferrous iron transport 70.1 3.1 0.00011 33.6 3.2 46 80-127 5-50 (87)
76 3oio_A Transcriptional regulat 69.7 3.8 0.00013 32.6 3.6 43 77-119 7-49 (113)
77 3g3z_A NMB1585, transcriptiona 69.7 2.6 9E-05 34.1 2.7 34 93-126 45-78 (145)
78 3nqo_A MARR-family transcripti 69.7 2.7 9.3E-05 36.4 2.9 46 82-127 46-91 (189)
79 1tbx_A ORF F-93, hypothetical 69.4 1.5 5.1E-05 34.0 1.1 38 91-128 20-61 (99)
80 1yyv_A Putative transcriptiona 69.4 1.7 5.9E-05 36.5 1.6 61 67-127 21-83 (131)
81 3gpv_A Transcriptional regulat 69.1 8.4 0.00029 33.1 5.9 39 93-135 16-56 (148)
82 2p5v_A Transcriptional regulat 69.0 3.2 0.00011 35.2 3.2 50 75-126 8-57 (162)
83 3fm5_A Transcriptional regulat 68.8 2.8 9.5E-05 34.2 2.7 36 92-127 53-88 (150)
84 3bdd_A Regulatory protein MARR 68.7 1.9 6.4E-05 34.5 1.6 36 92-127 44-79 (142)
85 3oop_A LIN2960 protein; protei 68.7 2.6 8.8E-05 34.1 2.4 44 82-127 42-85 (143)
86 2xrn_A HTH-type transcriptiona 68.6 3.8 0.00013 37.3 3.8 49 82-131 11-60 (241)
87 2rdp_A Putative transcriptiona 68.3 4.6 0.00016 32.6 3.9 35 92-126 55-89 (150)
88 2o0y_A Transcriptional regulat 68.0 3.7 0.00013 37.8 3.6 41 91-131 36-76 (260)
89 2cg4_A Regulatory protein ASNC 67.7 3.4 0.00012 34.6 3.1 50 75-126 6-55 (152)
90 3cjn_A Transcriptional regulat 67.4 5 0.00017 33.0 4.0 36 91-126 64-99 (162)
91 2nnn_A Probable transcriptiona 67.2 3 0.0001 33.1 2.5 35 92-126 51-85 (140)
92 3ech_A MEXR, multidrug resista 67.2 4.4 0.00015 32.7 3.6 44 82-127 42-85 (142)
93 3boq_A Transcriptional regulat 66.9 4.8 0.00016 33.0 3.8 36 91-126 60-95 (160)
94 1mkm_A ICLR transcriptional re 66.9 4.7 0.00016 36.7 4.1 44 82-126 13-56 (249)
95 3mn2_A Probable ARAC family tr 66.8 4.1 0.00014 32.0 3.2 42 78-119 3-44 (108)
96 3kp7_A Transcriptional regulat 66.7 8.1 0.00028 31.4 5.1 37 90-126 48-84 (151)
97 1p6r_A Penicillinase repressor 66.6 3.4 0.00012 31.1 2.6 46 80-127 12-61 (82)
98 2fbi_A Probable transcriptiona 66.6 3.1 0.00011 33.1 2.5 36 92-127 49-84 (142)
99 2jsc_A Transcriptional regulat 66.3 2.4 8E-05 34.6 1.7 44 81-127 25-68 (118)
100 3f3x_A Transcriptional regulat 65.8 3.4 0.00012 33.4 2.6 44 81-127 41-84 (144)
101 2w25_A Probable transcriptiona 65.4 4.4 0.00015 33.8 3.3 50 75-126 5-54 (150)
102 2ip2_A Probable phenazine-spec 65.3 3.9 0.00013 37.9 3.3 42 92-133 40-81 (334)
103 2qww_A Transcriptional regulat 65.2 4.2 0.00015 33.1 3.1 42 82-125 46-87 (154)
104 2cyy_A Putative HTH-type trans 65.0 4.5 0.00015 33.9 3.3 50 75-126 5-54 (151)
105 3cdh_A Transcriptional regulat 64.5 3.8 0.00013 33.5 2.7 37 91-127 55-91 (155)
106 2nyx_A Probable transcriptiona 64.4 4.5 0.00015 34.0 3.2 35 92-126 58-92 (168)
107 2wte_A CSA3; antiviral protein 63.5 5.5 0.00019 37.1 3.9 50 77-128 152-201 (244)
108 4hbl_A Transcriptional regulat 63.1 4.7 0.00016 33.0 3.0 36 92-127 54-89 (149)
109 2ia0_A Putative HTH-type trans 62.7 5.1 0.00018 34.8 3.3 50 75-126 15-64 (171)
110 3lsg_A Two-component response 62.2 6 0.0002 30.8 3.3 42 78-119 3-45 (103)
111 3e6m_A MARR family transcripti 61.8 3.4 0.00012 34.3 2.0 36 92-127 66-101 (161)
112 2h09_A Transcriptional regulat 61.8 7.2 0.00025 32.3 4.0 37 92-128 53-89 (155)
113 3bja_A Transcriptional regulat 61.8 3.2 0.00011 33.0 1.7 44 81-126 37-80 (139)
114 1bl0_A Protein (multiple antib 61.7 4.8 0.00017 32.9 2.8 42 77-118 11-52 (129)
115 2pn6_A ST1022, 150AA long hypo 61.7 5.3 0.00018 33.1 3.1 45 80-126 6-50 (150)
116 1r1t_A Transcriptional repress 61.7 4.8 0.00016 33.2 2.8 38 91-128 57-94 (122)
117 2fbk_A Transcriptional regulat 61.6 6.3 0.00021 33.5 3.6 35 93-127 86-120 (181)
118 3by6_A Predicted transcription 60.8 17 0.00057 30.2 6.0 52 78-129 16-71 (126)
119 1ylf_A RRF2 family protein; st 60.7 7.4 0.00025 33.0 3.9 46 81-126 18-63 (149)
120 3hh0_A Transcriptional regulat 60.7 13 0.00043 32.0 5.4 37 93-133 4-42 (146)
121 2g7u_A Transcriptional regulat 60.5 4 0.00014 37.5 2.3 50 81-131 15-66 (257)
122 4ham_A LMO2241 protein; struct 60.4 29 0.00099 28.7 7.4 51 78-128 19-73 (134)
123 3i53_A O-methyltransferase; CO 60.3 3.7 0.00013 38.2 2.1 50 82-134 30-79 (332)
124 1v4r_A Transcriptional repress 59.6 14 0.00047 29.0 5.1 54 76-129 14-71 (102)
125 3r4k_A Transcriptional regulat 59.3 7.5 0.00026 35.8 4.0 42 91-132 19-61 (260)
126 2k9s_A Arabinose operon regula 59.2 8.4 0.00029 30.2 3.7 40 78-117 4-44 (107)
127 3k69_A Putative transcription 59.0 8.4 0.00029 33.5 4.0 46 81-126 16-61 (162)
128 2qlz_A Transcription factor PF 59.0 14 0.00049 34.2 5.8 42 81-125 16-57 (232)
129 3ihu_A Transcriptional regulat 58.6 12 0.00041 33.1 5.1 56 73-128 15-74 (222)
130 2vn2_A DNAD, chromosome replic 58.3 6 0.0002 32.9 2.8 36 93-128 51-86 (128)
131 2e1c_A Putative HTH-type trans 57.6 7.3 0.00025 33.9 3.4 51 74-126 24-74 (171)
132 2pex_A Transcriptional regulat 57.5 3.6 0.00012 33.6 1.3 37 91-127 59-95 (153)
133 1fxk_C Protein (prefoldin); ar 57.3 17 0.0006 30.2 5.6 50 130-179 72-128 (133)
134 1xmk_A Double-stranded RNA-spe 57.2 11 0.00039 29.7 4.1 56 77-134 11-67 (79)
135 3tqn_A Transcriptional regulat 57.1 14 0.00046 29.9 4.7 52 78-129 14-69 (113)
136 4a5n_A Uncharacterized HTH-typ 56.9 7.2 0.00025 33.2 3.2 59 68-127 13-74 (131)
137 2r3s_A Uncharacterized protein 56.6 4.7 0.00016 37.1 2.1 42 91-133 37-78 (335)
138 3lst_A CALO1 methyltransferase 56.4 5 0.00017 37.8 2.3 43 90-133 52-94 (348)
139 1r8e_A Multidrug-efflux transp 55.4 32 0.0011 31.1 7.5 40 92-135 4-46 (278)
140 3gwz_A MMCR; methyltransferase 55.0 5 0.00017 38.3 2.0 44 90-133 68-112 (369)
141 1jgs_A Multiple antibiotic res 54.6 3.7 0.00013 32.7 0.9 35 92-126 47-81 (138)
142 3df8_A Possible HXLR family tr 54.4 33 0.0011 27.5 6.6 55 71-128 17-78 (111)
143 2ia2_A Putative transcriptiona 53.6 11 0.00037 34.8 4.0 44 91-136 34-77 (265)
144 1bia_A BIRA bifunctional prote 52.6 8.7 0.0003 36.7 3.3 53 80-134 8-61 (321)
145 1z91_A Organic hydroperoxide r 52.3 3.3 0.00011 33.4 0.3 36 92-127 53-88 (147)
146 1qzz_A RDMB, aclacinomycin-10- 52.3 6.3 0.00022 37.0 2.3 49 82-133 41-91 (374)
147 4aik_A Transcriptional regulat 52.2 43 0.0015 27.8 7.2 41 86-127 40-80 (151)
148 3b73_A PHIH1 repressor-like pr 52.1 9 0.00031 31.9 2.9 53 75-129 11-65 (111)
149 1q1h_A TFE, transcription fact 52.0 7.9 0.00027 30.5 2.4 36 91-126 31-66 (110)
150 3neu_A LIN1836 protein; struct 51.6 22 0.00074 29.3 5.2 52 78-129 18-73 (125)
151 3he5_B Synzip2; heterodimeric 51.4 37 0.0013 24.8 5.7 37 145-181 9-45 (52)
152 1wi9_A Protein C20ORF116 homol 51.2 14 0.00048 29.3 3.7 47 78-126 8-54 (72)
153 2ek5_A Predicted transcription 51.2 19 0.00064 30.1 4.8 50 80-129 11-64 (129)
154 1okr_A MECI, methicillin resis 50.9 8.5 0.00029 30.4 2.5 46 80-127 13-62 (123)
155 1hsj_A Fusion protein consisti 50.8 8.1 0.00028 37.6 2.8 45 82-126 409-453 (487)
156 2v79_A DNA replication protein 50.1 8.3 0.00028 32.9 2.4 37 90-126 48-84 (135)
157 3i4p_A Transcriptional regulat 49.5 11 0.00038 32.1 3.2 47 78-126 4-50 (162)
158 3sxy_A Transcriptional regulat 48.7 16 0.00055 32.2 4.2 41 89-129 31-71 (218)
159 2vz4_A Tipal, HTH-type transcr 48.6 26 0.0009 28.1 5.1 37 94-134 2-40 (108)
160 3dp7_A SAM-dependent methyltra 48.5 11 0.00039 35.7 3.4 47 83-131 41-87 (363)
161 2qko_A Possible transcriptiona 48.1 13 0.00046 31.1 3.5 43 71-113 26-68 (215)
162 1z4h_A TORI, TOR inhibition pr 47.5 7.8 0.00027 28.7 1.6 26 90-115 7-32 (66)
163 1x19_A CRTF-related protein; m 47.2 10 0.00034 35.7 2.7 43 91-134 62-104 (359)
164 1tw3_A COMT, carminomycin 4-O- 47.2 9.7 0.00033 35.6 2.6 44 91-134 50-93 (360)
165 2aze_A Transcription factor DP 45.4 57 0.0019 29.2 7.1 19 207-225 66-84 (155)
166 3k2z_A LEXA repressor; winged 45.2 9.4 0.00032 33.5 2.1 37 90-126 21-57 (196)
167 2yy0_A C-MYC-binding protein; 45.2 41 0.0014 24.8 5.2 33 145-177 18-50 (53)
168 3t8r_A Staphylococcus aureus C 44.9 13 0.00045 31.5 2.9 46 81-126 15-61 (143)
169 3m91_A Proteasome-associated A 44.4 61 0.0021 23.9 6.0 38 145-182 8-45 (51)
170 3dcf_A Transcriptional regulat 44.2 15 0.0005 30.4 3.0 42 71-112 29-70 (218)
171 2id3_A Putative transcriptiona 44.0 5.8 0.0002 34.1 0.5 44 71-114 38-81 (225)
172 1uly_A Hypothetical protein PH 43.9 14 0.00048 32.9 3.0 44 80-126 23-66 (192)
173 2b0l_A GTP-sensing transcripti 42.8 9.3 0.00032 30.9 1.6 39 89-127 38-77 (102)
174 2esh_A Conserved hypothetical 42.8 79 0.0027 25.4 7.2 44 83-126 19-68 (118)
175 2zdi_C Prefoldin subunit alpha 42.7 46 0.0016 28.4 6.0 51 129-179 81-138 (151)
176 1p4x_A Staphylococcal accessor 42.7 14 0.00048 34.3 3.0 45 83-127 164-208 (250)
177 1tc3_C Protein (TC3 transposas 42.2 17 0.00058 23.3 2.5 26 94-119 22-47 (51)
178 1q06_A Transcriptional regulat 42.2 39 0.0013 28.3 5.4 36 95-134 2-39 (135)
179 1fp2_A Isoflavone O-methyltran 42.1 13 0.00044 35.0 2.6 50 83-133 42-96 (352)
180 2qvo_A Uncharacterized protein 41.9 11 0.00039 29.0 1.9 35 90-124 27-61 (95)
181 1j9i_A GPNU1 DBD;, terminase s 41.9 11 0.00037 27.8 1.7 40 93-135 2-43 (68)
182 1mzb_A Ferric uptake regulatio 41.2 18 0.0006 30.1 3.1 47 81-127 22-73 (136)
183 3bvo_A CO-chaperone protein HS 40.4 54 0.0019 29.8 6.5 52 71-124 55-123 (207)
184 2o03_A Probable zinc uptake re 40.4 21 0.0007 29.5 3.4 46 82-128 16-66 (131)
185 3gbg_A TCP pilus virulence reg 39.8 21 0.00071 32.0 3.6 38 78-115 170-207 (276)
186 4dzo_A Mitotic spindle assembl 39.4 90 0.0031 26.5 7.2 35 146-180 4-38 (123)
187 2jn6_A Protein CGL2762, transp 39.4 6.8 0.00023 30.4 0.2 40 81-122 13-52 (97)
188 2pjp_A Selenocysteine-specific 38.8 24 0.00082 28.9 3.5 55 75-131 64-118 (121)
189 1r8d_A Transcription activator 38.7 58 0.002 26.0 5.7 36 94-133 3-40 (109)
190 3c7j_A Transcriptional regulat 38.3 19 0.00065 32.6 3.1 51 78-128 31-84 (237)
191 2g9w_A Conserved hypothetical 38.0 21 0.00071 29.4 3.0 46 81-127 13-62 (138)
192 2wt7_A Proto-oncogene protein 37.5 79 0.0027 23.6 5.9 33 148-180 25-57 (63)
193 2k4b_A Transcriptional regulat 37.2 16 0.00055 29.6 2.1 45 81-127 39-87 (99)
194 2qtq_A Transcriptional regulat 37.0 28 0.00096 28.5 3.6 44 70-113 13-56 (213)
195 4fx0_A Probable transcriptiona 36.9 20 0.00069 29.8 2.8 36 91-126 50-85 (148)
196 3lwf_A LIN1550 protein, putati 36.9 23 0.00077 30.9 3.2 46 81-126 31-77 (159)
197 2kfs_A Conserved hypothetical 36.6 14 0.00046 32.9 1.7 26 90-115 28-53 (148)
198 1umq_A Photosynthetic apparatu 36.3 51 0.0017 26.0 4.9 40 73-115 36-76 (81)
199 1jko_C HIN recombinase, DNA-in 36.0 17 0.00057 23.9 1.8 22 94-115 22-43 (52)
200 3dv8_A Transcriptional regulat 35.6 13 0.00045 31.4 1.4 39 93-132 169-207 (220)
201 3viq_B Mating-type switching p 35.4 24 0.00081 28.8 2.8 31 148-178 3-33 (85)
202 3ic7_A Putative transcriptiona 35.2 14 0.00048 30.5 1.5 52 78-129 16-71 (126)
203 2xdj_A Uncharacterized protein 35.2 68 0.0023 25.7 5.5 39 144-182 25-63 (83)
204 1d5y_A ROB transcription facto 35.1 19 0.00063 32.5 2.4 39 78-116 4-42 (292)
205 2zqm_A Prefoldin beta subunit 35.1 72 0.0025 25.4 5.8 98 75-180 8-111 (117)
206 3hrs_A Metalloregulator SCAR; 35.0 26 0.00088 31.4 3.3 39 90-128 17-55 (214)
207 2p5k_A Arginine repressor; DNA 34.9 28 0.00097 24.4 2.9 38 83-126 11-53 (64)
208 1hqc_A RUVB; extended AAA-ATPa 34.7 24 0.00084 31.9 3.2 54 75-128 245-300 (324)
209 1zg3_A Isoflavanone 4'-O-methy 34.6 17 0.00058 34.2 2.1 44 82-126 35-81 (358)
210 3bru_A Regulatory protein, TET 34.2 30 0.001 28.7 3.4 42 71-112 28-69 (222)
211 3uo3_A J-type CO-chaperone JAC 33.6 2.5E+02 0.0086 24.8 10.0 109 67-182 24-147 (181)
212 3mcz_A O-methyltransferase; ad 33.5 22 0.00074 33.1 2.7 39 93-132 56-94 (352)
213 2zqm_A Prefoldin beta subunit 33.4 99 0.0034 24.6 6.3 34 148-181 72-105 (117)
214 1fp1_D Isoliquiritigenin 2'-O- 33.3 18 0.00062 34.3 2.2 34 93-126 62-101 (372)
215 3fiw_A Putative TETR-family tr 33.3 26 0.0009 30.4 3.0 45 69-113 21-65 (211)
216 2bgc_A PRFA; bacterial infecti 33.1 29 0.001 30.1 3.3 39 93-132 169-208 (238)
217 1hw1_A FADR, fatty acid metabo 33.0 21 0.00071 31.6 2.3 48 80-127 14-65 (239)
218 2obp_A Putative DNA-binding pr 33.0 21 0.00071 29.2 2.1 38 89-126 32-69 (96)
219 1ft9_A Carbon monoxide oxidati 32.9 37 0.0013 29.0 3.9 36 94-129 164-199 (222)
220 2qc0_A Uncharacterized protein 32.7 22 0.00076 34.7 2.7 46 81-128 301-346 (373)
221 2fxa_A Protease production reg 32.5 11 0.00038 33.3 0.5 36 92-127 61-96 (207)
222 3qqa_A CMER; alpha-helical, he 32.3 13 0.00045 30.7 0.9 45 68-112 14-58 (216)
223 4dzn_A Coiled-coil peptide CC- 31.9 93 0.0032 20.9 4.7 26 148-173 4-29 (33)
224 1fxk_A Prefoldin; archaeal pro 31.8 71 0.0024 25.1 5.1 73 102-179 26-98 (107)
225 3e6c_C CPRK, cyclic nucleotide 31.5 30 0.001 30.2 3.1 40 93-133 177-216 (250)
226 1m1j_C Fibrinogen gamma chain; 31.3 20 0.00068 36.3 2.1 14 111-124 48-61 (409)
227 1xd7_A YWNA; structural genomi 31.2 49 0.0017 27.7 4.3 47 78-126 10-56 (145)
228 2rae_A Transcriptional regulat 31.0 40 0.0014 27.7 3.7 44 69-112 13-56 (207)
229 1p4x_A Staphylococcal accessor 30.9 34 0.0012 31.6 3.5 44 83-126 40-83 (250)
230 2iu5_A DHAS, YCEG, HTH-type dh 30.7 39 0.0013 27.8 3.6 38 75-112 15-52 (195)
231 3gp4_A Transcriptional regulat 30.5 75 0.0026 27.0 5.3 31 147-177 89-119 (142)
232 2hs5_A Putative transcriptiona 30.5 29 0.001 31.3 2.9 41 89-129 47-87 (239)
233 4a6d_A Hydroxyindole O-methylt 30.4 27 0.00091 33.2 2.8 46 82-128 33-78 (353)
234 1t2k_D Cyclic-AMP-dependent tr 30.1 1.3E+02 0.0043 22.1 5.9 33 148-180 24-56 (61)
235 2dg7_A Putative transcriptiona 30.1 44 0.0015 27.3 3.7 40 75-114 9-48 (195)
236 3p9c_A Caffeic acid O-methyltr 30.0 28 0.00097 33.2 2.9 45 82-126 45-94 (364)
237 3ppb_A Putative TETR family tr 29.7 43 0.0015 26.8 3.6 41 72-112 8-48 (195)
238 1nkp_B MAX protein, MYC proto- 29.7 81 0.0028 24.4 5.0 34 146-179 47-80 (83)
239 3edp_A LIN2111 protein; APC883 29.6 43 0.0015 30.4 3.9 51 78-128 14-68 (236)
240 2di3_A Bacterial regulatory pr 29.5 26 0.00088 31.3 2.4 37 89-125 23-60 (239)
241 2wv0_A YVOA, HTH-type transcri 29.5 47 0.0016 30.2 4.2 50 78-127 15-68 (243)
242 3dkw_A DNR protein; CRP-FNR, H 29.5 36 0.0012 28.8 3.1 39 93-132 178-216 (227)
243 2j5u_A MREC protein; bacterial 29.5 39 0.0013 31.6 3.7 45 146-191 26-71 (255)
244 1lwu_C Fibrinogen gamma chain; 29.5 28 0.00096 34.2 2.8 101 143-248 2-104 (323)
245 1g2h_A Transcriptional regulat 29.1 78 0.0027 22.9 4.6 38 74-115 17-55 (61)
246 2fe3_A Peroxide operon regulat 29.0 40 0.0014 28.3 3.4 47 81-128 26-77 (145)
247 3u1d_A Uncharacterized protein 29.0 41 0.0014 29.6 3.5 47 82-128 34-81 (151)
248 1y6u_A XIS, excisionase from t 28.6 20 0.00068 27.5 1.3 26 90-115 13-38 (70)
249 4ev0_A Transcription regulator 28.5 41 0.0014 28.2 3.3 39 93-132 163-201 (216)
250 3he0_A Transcriptional regulat 28.5 41 0.0014 27.2 3.2 43 70-112 8-50 (196)
251 2yve_A Transcriptional regulat 28.4 40 0.0014 27.8 3.2 37 76-112 7-43 (185)
252 3q8t_A Beclin-1; autophagy, AT 28.2 1.1E+02 0.0039 24.7 5.8 35 149-183 21-55 (96)
253 2fmy_A COOA, carbon monoxide o 28.2 33 0.0011 29.2 2.7 41 93-133 167-207 (220)
254 1fxk_A Prefoldin; archaeal pro 27.8 1.3E+02 0.0045 23.5 6.1 37 143-179 69-105 (107)
255 2yko_A LINE-1 ORF1P; RNA-bindi 27.7 60 0.0021 30.7 4.6 41 142-182 9-49 (233)
256 4etp_A Kinesin-like protein KA 27.5 64 0.0022 32.1 5.1 52 147-198 4-59 (403)
257 3qkx_A Uncharacterized HTH-typ 27.5 43 0.0015 26.8 3.2 37 76-112 11-47 (188)
258 3bni_A Putative TETR-family tr 27.4 24 0.00083 30.2 1.7 41 72-112 42-82 (229)
259 1ci6_A Transcription factor AT 27.4 1.5E+02 0.005 22.2 5.9 32 148-179 25-56 (63)
260 2zb9_A Putative transcriptiona 27.3 21 0.00072 29.8 1.3 42 72-113 22-63 (214)
261 2v7f_A RPS19, RPS19E SSU ribos 27.2 39 0.0013 29.5 3.0 46 80-128 57-116 (150)
262 3knw_A Putative transcriptiona 27.1 29 0.00097 28.5 2.1 44 69-112 10-53 (212)
263 1sgm_A Putative HTH-type trans 26.9 50 0.0017 26.4 3.5 39 75-113 8-46 (191)
264 2hxi_A Putative transcriptiona 26.9 44 0.0015 29.7 3.4 45 68-112 24-68 (241)
265 1sd4_A Penicillinase repressor 26.8 38 0.0013 26.7 2.7 45 81-127 14-62 (126)
266 3cta_A Riboflavin kinase; stru 26.4 21 0.00071 31.9 1.2 38 90-127 24-61 (230)
267 1fxk_C Protein (prefoldin); ar 26.4 1.1E+02 0.0039 25.1 5.7 32 150-181 92-123 (133)
268 3nmd_A CGMP dependent protein 26.3 1.3E+02 0.0045 23.7 5.6 28 148-175 21-48 (72)
269 2w57_A Ferric uptake regulatio 26.3 32 0.0011 29.2 2.2 46 82-127 22-72 (150)
270 3kz9_A SMCR; transcriptional r 26.2 54 0.0018 26.5 3.6 38 75-112 19-56 (206)
271 3kkc_A TETR family transcripti 26.2 35 0.0012 27.3 2.4 40 73-112 12-51 (177)
272 3col_A Putative transcription 26.2 36 0.0012 27.3 2.5 42 71-112 8-49 (196)
273 2iai_A Putative transcriptiona 26.0 47 0.0016 28.3 3.3 37 76-112 33-69 (230)
274 1zk8_A Transcriptional regulat 26.0 44 0.0015 26.9 3.0 42 71-112 6-47 (183)
275 2zhg_A Redox-sensitive transcr 25.9 1.1E+02 0.0039 26.2 5.7 39 92-134 10-49 (154)
276 3on4_A Transcriptional regulat 25.8 55 0.0019 26.2 3.5 42 71-112 8-49 (191)
277 1jnm_A Proto-oncogene C-JUN; B 25.7 1.2E+02 0.0042 22.3 5.2 33 147-179 23-55 (62)
278 3vp5_A Transcriptional regulat 25.5 48 0.0016 27.4 3.2 36 76-111 15-50 (189)
279 2yua_A Williams-beuren syndrom 25.5 1.4E+02 0.0047 23.5 5.8 43 71-113 27-81 (99)
280 1gmj_A ATPase inhibitor; coile 25.5 1.4E+02 0.0049 24.2 5.8 29 154-182 52-80 (84)
281 3mnl_A KSTR, transcriptional r 24.7 11 0.00038 30.8 -0.9 44 70-113 17-60 (203)
282 3kcc_A Catabolite gene activat 24.4 54 0.0018 29.0 3.5 38 93-131 217-254 (260)
283 3hho_A CO-chaperone protein HS 24.4 1.8E+02 0.006 25.5 6.8 97 74-182 19-142 (174)
284 3ryp_A Catabolite gene activat 24.4 52 0.0018 27.4 3.2 39 93-132 167-205 (210)
285 3on2_A Probable transcriptiona 24.4 68 0.0023 25.7 3.9 39 74-112 13-51 (199)
286 1fx7_A Iron-dependent represso 24.3 22 0.00074 31.9 0.9 35 94-128 25-59 (230)
287 3ke2_A Uncharacterized protein 24.2 43 0.0015 28.8 2.6 33 92-124 32-64 (117)
288 3bwg_A Uncharacterized HTH-typ 23.9 67 0.0023 29.0 4.1 51 78-128 10-64 (239)
289 2xig_A Ferric uptake regulatio 23.8 57 0.0019 27.6 3.4 45 82-127 32-81 (150)
290 3mwm_A ZUR, putative metal upt 23.8 50 0.0017 27.6 3.0 45 82-127 19-68 (139)
291 2qlz_A Transcription factor PF 23.8 41 0.0014 31.1 2.7 43 91-133 176-218 (232)
292 2hxo_A Putative TETR-family tr 23.6 83 0.0029 27.7 4.6 43 70-112 13-55 (237)
293 3m9b_A Proteasome-associated A 23.2 72 0.0025 30.5 4.2 38 145-182 53-90 (251)
294 3bqz_B HTH-type transcriptiona 23.2 46 0.0016 26.9 2.6 36 77-112 6-41 (194)
295 3him_A Probable transcriptiona 22.9 52 0.0018 26.7 2.9 42 71-112 14-55 (211)
296 2vxz_A Pyrsv_GP04; viral prote 22.8 1.9E+02 0.0065 26.1 6.6 52 80-134 14-66 (165)
297 2gqq_A Leucine-responsive regu 22.7 21 0.00073 30.2 0.5 49 75-125 11-59 (163)
298 2w83_C C-JUN-amino-terminal ki 22.6 57 0.0019 26.2 2.9 31 147-177 45-75 (77)
299 3egq_A TETR family transcripti 22.5 47 0.0016 26.5 2.5 37 77-113 8-44 (170)
300 3e7l_A Transcriptional regulat 22.4 62 0.0021 23.4 2.9 40 75-116 16-55 (63)
301 1zyb_A Transcription regulator 22.4 66 0.0022 27.7 3.6 39 93-132 186-224 (232)
302 1ci6_A Transcription factor AT 22.4 1.4E+02 0.0047 22.3 4.9 30 147-176 31-60 (63)
303 3eqx_A FIC domain containing t 22.2 50 0.0017 32.5 3.0 45 81-127 301-345 (373)
304 2dg8_A Putative TETR-family tr 22.1 53 0.0018 26.9 2.8 39 74-112 10-48 (193)
305 1ntc_A Protein (nitrogen regul 22.1 64 0.0022 25.1 3.1 39 76-116 49-87 (91)
306 4aci_A HTH-type transcriptiona 22.1 25 0.00085 28.6 0.7 45 69-113 10-54 (191)
307 2g7s_A Transcriptional regulat 22.0 43 0.0015 26.8 2.2 37 76-112 11-47 (194)
308 3ccy_A Putative TETR-family tr 21.9 96 0.0033 25.5 4.4 41 72-112 13-53 (203)
309 2np3_A Putative TETR-family re 21.9 19 0.00066 30.1 0.0 37 76-112 33-69 (212)
310 3e97_A Transcriptional regulat 21.8 39 0.0013 28.8 2.0 39 93-132 175-213 (231)
311 3ra3_A P1C; coiled coil domain 21.5 62 0.0021 21.0 2.3 23 157-179 4-26 (28)
312 3l7w_A Putative uncharacterize 21.4 67 0.0023 25.5 3.2 46 81-126 13-59 (108)
313 3u06_A Protein claret segregat 21.0 1.1E+02 0.0037 30.7 5.2 33 149-181 6-38 (412)
314 2oz6_A Virulence factor regula 20.9 39 0.0013 28.1 1.7 39 93-132 164-202 (207)
315 2qen_A Walker-type ATPase; unk 20.8 89 0.003 28.0 4.2 40 92-132 294-338 (350)
316 2ozu_A Histone acetyltransfera 20.7 1E+02 0.0035 30.0 4.8 51 72-125 187-243 (284)
317 3f8m_A GNTR-family protein tra 20.5 47 0.0016 30.3 2.3 42 89-130 31-73 (248)
318 3eet_A Putative GNTR-family tr 20.2 89 0.003 29.0 4.2 51 77-127 33-87 (272)
319 4b4t_K 26S protease regulatory 20.2 3.5E+02 0.012 27.1 8.8 39 143-181 46-84 (428)
320 2qib_A TETR-family transcripti 20.1 59 0.002 27.7 2.8 38 75-112 15-52 (231)
321 3f1b_A TETR-like transcription 20.1 58 0.002 26.3 2.6 37 76-112 17-53 (203)
No 1
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=100.00 E-value=1.4e-37 Score=262.80 Aligned_cols=102 Identities=29% Similarity=0.470 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCCeEEecCC
Q 016090 144 VDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDP 223 (395)
Q Consensus 144 ~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP 223 (395)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||+++||||||||+||+||||+|
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceEEEEecCCCceEEEEecC
Q 016090 224 DEAVDYPQRRYRIILRSTMGPIDVYLVSR 252 (395)
Q Consensus 224 ~e~~~~~~~~YqI~LkS~~GPIdVyL~~~ 252 (395)
++ +|||||||++||||||||++
T Consensus 84 ~~-------~yqi~LkS~~GPIdV~L~~~ 105 (106)
T 2aze_B 84 SE-------NFQISLKSKQGPIDVFLCPE 105 (106)
T ss_dssp SS-------CEEEEEECSSSCCEEECCTT
T ss_pred Cc-------ceEEEEECCCCCEEEEEeCC
Confidence 84 69999999999999999986
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.96 E-value=6.9e-30 Score=204.52 Aligned_cols=73 Identities=67% Similarity=1.051 Sum_probs=65.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhcc-ceeehhhhHHHhhhcccchhccCCeEEEeccC
Q 016090 65 PAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (395)
Q Consensus 65 p~~~~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (395)
|.+.+|+++||++||++||++|++++++.+||++||+.|+| +|||||||+|||||||||+|.+||.|+|+|.+
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 67899999999999999999999999999999999999999 99999999999999999999999999999975
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.30 E-value=1e-12 Score=109.54 Aligned_cols=66 Identities=30% Similarity=0.534 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHh-------------------ccceeehhhhHHHhhhcccchhccCCeE
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETL-------------------EVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L-------------------~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
..+.|.-++.+..+.++. .+....+++|+.| ..+||||||++|||++||||+| .|+.|
T Consensus 8 ~~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~i 84 (95)
T 1cf7_B 8 NGKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKEI 84 (95)
T ss_dssp -CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSCE
T ss_pred cCccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCEE
Confidence 344555555555555543 2333455555444 4599999999999999999999 79999
Q ss_pred EEeccCCC
Q 016090 132 RWKGLDNS 139 (395)
Q Consensus 132 ~W~G~~~s 139 (395)
+|+|++..
T Consensus 85 ~W~g~~~~ 92 (95)
T 1cf7_B 85 KWIGLPTN 92 (95)
T ss_dssp EBCCCC--
T ss_pred EEecCCcc
Confidence 99998754
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.061 Score=41.31 Aligned_cols=44 Identities=23% Similarity=0.520 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccch
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (395)
.+.+++++. .+|++|+..+|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr~-sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVN-NGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHH-TTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-cCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 467788877 59999999999999999999999999999999985
No 5
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.11 E-value=0.083 Score=42.72 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEec
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 135 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 135 (395)
|-.-..+.++.+.+|+. +| +...++|+.||++|.-++=.++-||.=|+|.+...+--+|.=
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 44556778899999984 55 999999999999999999999999999999999999999984
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.73 E-value=0.085 Score=41.21 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=47.5
Q ss_pred HHHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 80 KKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 80 kKFi~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
.+.+.+|++.+ +..+...++|+.|+|.|+.|.-.+.-||.-|+|++...+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 66788887655 66799999999999999999999999999999999876656675
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.01 E-value=0.13 Score=40.95 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 79 TKKFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 79 TkKFi~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
-++.+++|++.+ +..+...++|+.|+|.|+-|.-.+.-||.-|+|++...+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 466778777654 55799999999999999999999999999999998876667776
No 8
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.75 E-value=0.14 Score=38.59 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.-.+.+++|... +..+.+.++|+.|++.|--++-+++.|+.-|+|+...+..|
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 345788888763 45699999999999999999999999999999987544433
No 9
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.05 E-value=0.41 Score=38.56 Aligned_cols=46 Identities=9% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+....+..+. .+ +....+|..+++..|++-.+++.|+.-|||++.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34445555554 34 889999999999999999999999999999998
No 10
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=89.91 E-value=1.6 Score=34.30 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCe
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 130 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (395)
+.+.++. ++.+.+.++|+.|++.+-.++-.++.|+.-|+|++.....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 3555563 3458999999999999999999999999999998764433
No 11
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.13 E-value=1.4 Score=37.25 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
++.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3458999999999999999999999999999999874
No 12
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=89.05 E-value=0.51 Score=39.04 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+|...++.-+...++|+.|++.|-.+|-.++.|+..|+|+|.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34566666554333999999999999999999999999999999986
No 13
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.39 E-value=0.42 Score=36.46 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
.+.+.++... +.+...++|+.|+|.+.-++-+++.|+.-|+|++
T Consensus 3 ~~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3556666654 4689999999999999999999999999999984
No 14
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=88.35 E-value=1.7 Score=35.42 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++...+++.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4445555556779999999999999999999999999999999883
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=87.70 E-value=1.2 Score=35.71 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..+.++...+++.+.+.++|+.|++.+-.+.-+++-||.-|+|+|.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3555566777678999999999999999999999999999999987
No 16
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.60 E-value=1.4 Score=35.41 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 667899999999999999999999999999999986
No 17
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.46 E-value=5.6 Score=31.69 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+.++... ++.+.+.++|+.|++.|=.++.+++.||.-|+|++.
T Consensus 30 ~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 445555323 356999999999999999999999999999999986
No 18
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=84.26 E-value=0.67 Score=36.15 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
+.+.++ .+.+.+.++|+.|++.+--++-.++.|+.-|+|++.. ..|..
T Consensus 35 ~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 345555 3568999999999999999999999999999999876 54443
No 19
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.67 E-value=0.64 Score=37.40 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCe
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 130 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (395)
+.+.++. .+.+.+.++|+.|++.+..++-.++.|+..|||++...+.
T Consensus 29 ~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 29 QILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp HHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445553 3678999999999999999999999999999998764443
No 20
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=83.66 E-value=1.6 Score=35.09 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++.. .+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444433 3468999999999999999999999999999999873
No 21
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=83.14 E-value=0.28 Score=47.89 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEec
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 135 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G 135 (395)
++.|++. |.....++|+.+|+.|.++|++.+.|+.-|||++...+..+|.-
T Consensus 24 Y~~Ll~~---g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~a 74 (342)
T 3qph_A 24 YWTLLVY---GPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAA 74 (342)
T ss_dssp SHHHHHH---HHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEE
T ss_pred HHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEE
Confidence 5666643 45777889999999999999999999999999988666666764
No 22
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.75 E-value=0.89 Score=34.71 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=38.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+.-|+|++....
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 444453 3557899999999999999999999999999999987443
No 23
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=82.32 E-value=1.3 Score=36.34 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=38.5
Q ss_pred HHHHHHhhC-CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHA-EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~a-p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+.++... +++.+.+.++|+.++|.++-++.|++.|+..|||+..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 344445443 4678999999999999999999999999999999876
No 24
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=82.18 E-value=0.99 Score=36.16 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.++.++...+++.+...++|+.|++.+-.++-+++-||.-|||++..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 34555666655579999999999999999999999999999999863
No 25
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.07 E-value=0.8 Score=34.96 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.++.. .+.+...++|+.|++.+-.+|.+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555544 3458999999999999999999999999999999864
No 26
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.05 E-value=0.65 Score=35.59 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
++.+.+.++|+.|++.+-.+|.+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999998743
No 27
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=80.89 E-value=1.3 Score=36.31 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
++.+.+.++|+.|+|.+-.+.-+++.||.-|+|++...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 34589999999999999999999999999999998743
No 28
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=80.83 E-value=0.8 Score=34.68 Aligned_cols=47 Identities=13% Similarity=0.386 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+++|...+++.+.+.++++.| +|.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666655443689999999999 999999999999999999999863
No 29
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=79.32 E-value=1.1 Score=35.79 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
|.....+.+++|..|. +++.+-++.+|.+||+.|+-|=-++.-|+.=|.|.+...+.-.|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3345556667777553 455599999999999999999999999999999999999999996
No 30
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=79.12 E-value=1.6 Score=38.30 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc-chhccCCeEEEe
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWK 134 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~ 134 (395)
+.+.+|++. .+.+...++|+.|+|++|-||.=++.|+..|+ |.+. ..-|.+.
T Consensus 25 ~Il~~L~~~-~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~ 77 (187)
T 1j5y_A 25 SIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLA 77 (187)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECC
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEEC
Confidence 456666653 34589999999999999999999999999999 8764 3444444
No 31
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.82 E-value=1.9 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..++.+|.++.+.-+...++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 46777787766667999999999999999999999999999999943
No 32
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.34 E-value=2.4 Score=34.22 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.++... .+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 40 iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 40 VLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 44444442 456899999999999999999999999999999987
No 33
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=78.32 E-value=1.8 Score=41.91 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc-chhccCCeEEEec
Q 016090 79 TKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWKG 135 (395)
Q Consensus 79 TkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~G 135 (395)
-++.+++|+.+.+..+.-.++|+.|+|+|+-|+--++.|+..|+ |+...+.-|+...
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 35788888877778899999999999999999999999999998 6655555677765
No 34
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.26 E-value=9.9 Score=31.26 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=34.0
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.|=.+.-+++-||.-|||+|..
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3568999999999999999999999999999999873
No 35
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.25 E-value=2.4 Score=34.51 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++.. .+.+.+.++|+.|++.+-.++-+++-||.-|||++..
T Consensus 42 iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 42 VLASLKK--HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3444433 3468999999999999999999999999999999873
No 36
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=77.85 E-value=2.7 Score=34.02 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCe
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 130 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (395)
+.+.+|. ++.+...++|+.|++.+-.++-.+++|+..|||++.....
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr 68 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGR 68 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 4556665 4678999999999999999999999999999998764443
No 37
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=77.79 E-value=2.2 Score=35.74 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+|....++.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 3444444445679999999999999999999999999999999873
No 38
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.73 E-value=1.6 Score=35.44 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.++...+++.+...++|+.|++.+=.+.-+++-||.-|||+|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555578999999999999999999999999999999986
No 39
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=77.21 E-value=5.1 Score=32.10 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.++... +.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 34444443 46899999999999999999999999999999986
No 40
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=76.78 E-value=3.6 Score=33.29 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.++.. .+.+.+.++|+.|++.+=.++-+++-||.-|||+|.
T Consensus 45 iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 45 IISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4444444 347899999999999999999999999999999987
No 41
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=76.58 E-value=8.9 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=33.0
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.+-.++-+++-||.-|||+|..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4568899999999999999999999999999999863
No 42
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=76.27 E-value=2.7 Score=39.32 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.+++|...+ +.+.|.++|+.||+.|=.+|-|++.|+..|++++.....|
T Consensus 35 IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y 83 (275)
T 3mq0_A 35 ILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL 83 (275)
T ss_dssp HHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE
T ss_pred HHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE
Confidence 455565544 5699999999999999999999999999999999864444
No 43
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=76.00 E-value=1.5 Score=34.78 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+.+.++. ++.+.+.++|+.|++.+-.++-.++.|+..|||++...+
T Consensus 30 ~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 30 RIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3455554 355899999999999999999999999999999876433
No 44
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.43 E-value=3.1 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+.+.++|+.|++.+-.++-+++.||.-|+|++.
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 35899999999999999999999999999999986
No 45
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=75.41 E-value=0.66 Score=37.46 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3468999999999999999999999999999999874
No 46
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=75.31 E-value=2.8 Score=33.34 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.++.. .+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 47
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=75.13 E-value=1.5 Score=33.35 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++.. ++.+...++|+.|++.+-.+|-+++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444433 3468999999999999999999999999999999753
No 48
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=75.06 E-value=4.5 Score=32.54 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+.++.. .+ +...++|+.|++.|=.+.-+++.||.-|||+|..
T Consensus 42 ~iL~~l~~--~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSE--ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTT--CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHh--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 34444543 44 9999999999999999999999999999999864
No 49
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=74.99 E-value=1.9 Score=33.43 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=34.8
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+.+...++|+.|++.+..++--++.|+.-|||++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999999999999999876443
No 50
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=74.99 E-value=0.55 Score=37.57 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=44.9
Q ss_pred CCCCCCCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhcccchhcc
Q 016090 67 GSCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 67 ~~~R~d~SLglLTkKF----i~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..|.....|..+..++ +.++ . .+.+...++++.| ++.+..++-.++.||.-|||+|..
T Consensus 11 ~~c~~~~~l~~l~~~~~~~IL~~L--~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 11 EECPVRKSMQIFAGKWTLLIIFQI--N-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TTCHHHHHHHHHTSSSHHHHHHHH--T-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHcCccHHHHHHHH--H-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 3455566666666443 2233 2 5779999999999 499999999999999999999874
No 51
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=74.67 E-value=17 Score=32.78 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.+|. .+.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 19 ~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 3455564 3568999999999999999999999999999999854
No 52
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=74.61 E-value=2.1 Score=33.16 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHH--HhhCCCCcccHHHHHHHhccceee-hhhhHHHhhhcccch
Q 016090 72 DSSLGLLTKKFINL--IKHAEDGILDLNKAAETLEVQKRR-IYDITNVLEGIGLIE 124 (395)
Q Consensus 72 d~SLglLTkKFi~L--l~~ap~g~ldLn~aA~~L~VqKRR-IYDItNVLEgIGLIe 124 (395)
...+|.+.+-|.-| +... ++.+.+.++|+.|++.+-. ++-+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~-~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKK-GYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34456666554433 3333 2268999999999999999 999999999999999
No 53
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.39 E-value=7 Score=31.16 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999863
No 54
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.18 E-value=2.3 Score=35.43 Aligned_cols=37 Identities=27% Similarity=0.147 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3568999999999999999999999999999999873
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=74.12 E-value=2.9 Score=33.91 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999863
No 56
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=73.88 E-value=1 Score=38.28 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCCCCCcHHHHHHHH----HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 68 SCRYDSSLGLLTKKF----INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 68 ~~R~d~SLglLTkKF----i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.|.....|..+..++ +..+. .|.+...++++.|++.+..+...++.||.-|||+|..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666788776543 23332 5678999999999999999999999999999999875
No 57
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=73.64 E-value=2.3 Score=33.97 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=34.8
Q ss_pred CCcccHHHHHHHh-ccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
++.+...++|+.| ++.+..++..++.||.-|||+|..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5778999999999 999999999999999999999874
No 58
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.28 E-value=2.3 Score=39.31 Aligned_cols=55 Identities=22% Similarity=0.365 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHH-HhhhcccchhccCC
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLKN 129 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sKN 129 (395)
|..+-++++..+-...++.+.+.++|+.||+.++.+|+.+. .|...|||.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 44455778877666566789999999999999999999999 99999999887554
No 59
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=73.08 E-value=2.8 Score=33.75 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 116 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 116 (395)
+..++++++.......++|.++|+.+++.+|.|+-+..-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567899999999888999999999999999999877654
No 60
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=73.00 E-value=2.5 Score=33.83 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998753
No 61
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=72.69 E-value=1.7 Score=36.19 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=40.3
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.++...+++.+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445566788899999999999999999999999999999999874
No 62
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=72.53 E-value=2.3 Score=33.40 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHHhhC----CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHA----EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~a----p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.+++++.. .++.+.+.++|+.|+|+.--+..-++.||.-|+|.+.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3455555543 3688999999999999988899999999999999887
No 63
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=72.05 E-value=2.7 Score=33.01 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+++++. .|.+.+.++|+.|+|+.=-|--.++.||.-|+|+|.
T Consensus 5 ~~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456677765 688999999999999998888899999999999997
No 64
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.91 E-value=2.8 Score=32.77 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.+.++.+ |.+...++|+.|++.+-.++-.++.|+..|||++....
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4455533 55899999999999999999999999999999876443
No 65
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=71.90 E-value=4.1 Score=33.02 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.++.+.+.++|+.|++.+--++-+++.||.-|||++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 46779999999999999999999999999999999875
No 66
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=71.90 E-value=1.4 Score=35.75 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
...+.+...++|+.|++.+-.+.-+++-||.-|+|+|..
T Consensus 46 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 46 ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 346789999999999999999999999999999999873
No 67
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.19 E-value=2.8 Score=34.98 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 5 ~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 5 QIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344678888876 467999999999999999999999999999999864
No 68
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=71.16 E-value=3.4 Score=35.56 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
+.+.+|. .+.+.+.++|+.|++.+-.++-.+.+|+..|||++....+..+.
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 3555554 46689999999999999999999999999999997654444433
No 69
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.06 E-value=22 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred CcccHHHHHHHh-ccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.| ++.+-.++.+++.||.-|||+|..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 70
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=70.81 E-value=2.5 Score=34.61 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+.+.+|.. .+.+.+.++|+.|++.+-.++-.++.|+..|||++...
T Consensus 46 ~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 46 KITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555543 45689999999999999999999999999999987543
No 71
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=70.50 E-value=3.1 Score=32.83 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 120 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 120 (395)
+..++++++.......++|.++|+.+|+++|.|+-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 5578888888888888999999999999999999887654443
No 72
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=70.40 E-value=2.8 Score=34.97 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|..+-++.+.+|+. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44555688888876 477999999999999999999999999999999864
No 73
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.21 E-value=6.1 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 143 EVDADASILQADIDNLSMEELRVDEQTREL 172 (395)
Q Consensus 143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~ 172 (395)
.+..+....|++|++|+.+-..|+++|+++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345667889999999999999999999875
No 74
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.16 E-value=3.2 Score=33.96 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+|+. ++.+...++|+.||+++..++..++-|+.-|+|++.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467777764 456899999999999999999999999999999865
No 75
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=70.07 E-value=3.1 Score=33.60 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+++++. .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356677765 6889999999999999988888999999999999984
No 76
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=69.74 E-value=3.8 Score=32.55 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 119 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (395)
.+..++++++.......++|.++|+.+++.+|.|+-+..-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567889999998888899999999999999999988765433
No 77
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=69.69 E-value=2.6 Score=34.09 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=32.4
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.++|+.|++.+-.++-+++-||.-|||+|.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 3999999999999999999999999999999986
No 78
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=69.65 E-value=2.7 Score=36.39 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=40.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+|...+++.+.+.++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4555666678889999999999999999999999999999999863
No 79
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=69.43 E-value=1.5 Score=34.00 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCcccHHHH----HHHhccceeehhhhHHHhhhcccchhccC
Q 016090 91 DGILDLNKA----AETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 91 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.+.+...++ |+.|++.+-.++-+++-||.-|||+|...
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 456788888 99999999999999999999999998643
No 80
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=69.40 E-value=1.7 Score=36.48 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCCCCCCcHHHHHHHHH-HHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhcccchhcc
Q 016090 67 GSCRYDSSLGLLTKKFI-NLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 67 ~~~R~d~SLglLTkKFi-~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..|.....|.+|..++- .+|..-..|.+...++++.| ++.+..+...++.||.-|||+|..
T Consensus 21 ~~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 21 EQCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TTCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 35666677888886642 12221125779999999999 799999999999999999999874
No 81
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=69.06 E-value=8.4 Score=33.06 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=28.3
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccch--hccCCeEEEec
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWKG 135 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~G 135 (395)
.+.+.++|+.+||..|-|- -.|-+|||. +...|.|+.-.
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y~ 56 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIFN 56 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEBC
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeecC
Confidence 5889999999999988542 126788985 45567676643
No 82
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.04 E-value=3.2 Score=35.17 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|..+-++.+.+|+. ++.+...++|+.||+++..++..++-|+.-|+|++.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44556688888876 456899999999999999999999999999999864
No 83
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=68.83 E-value=2.8 Score=34.23 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=32.2
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.+.++|+.|++.|=.+.-+++-||.-|||+|..
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 348999999999999999999999999999999863
No 84
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.72 E-value=1.9 Score=34.45 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999999874
No 85
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=68.69 E-value=2.6 Score=34.07 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++... +.+.+.++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 42 iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 42 VLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34444433 678999999999999999999999999999999873
No 86
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=68.56 E-value=3.8 Score=37.28 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC-CeE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRI 131 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i 131 (395)
.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++... ..|
T Consensus 11 iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y 60 (241)
T 2xrn_A 11 IMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF 60 (241)
T ss_dssp HHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE
Confidence 45555443 34689999999999999999999999999999999754 344
No 87
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.25 E-value=4.6 Score=32.63 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+...++|+.|++.+-.++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 88
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=67.99 E-value=3.7 Score=37.80 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=36.4
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
++.+.+.++|+.|++.|--+|-+++.|+..|+|++.....|
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y 76 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSY 76 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeE
Confidence 46799999999999999999999999999999999754433
No 89
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=67.73 E-value=3.4 Score=34.55 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|..+-++.+.+|+.. +.+...++|+.||+++..++..++-|+.-|+|.+.
T Consensus 6 ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 6 IDNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CCHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 344556788888764 67999999999999999999999999999999873
No 90
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.42 E-value=5 Score=33.01 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 456899999999999999999999999999999986
No 91
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=67.20 E-value=3 Score=33.11 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=33.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 92
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=67.19 E-value=4.4 Score=32.69 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.++... +.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 44444443 468999999999999999999999999999999873
No 93
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=66.90 E-value=4.8 Score=32.98 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+...++|+.|++.+-.+.-+++-||.-|||+|.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 456899999999999999999999999999999986
No 94
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=66.87 E-value=4.7 Score=36.70 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=37.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.++++... ++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.
T Consensus 13 iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 13 ILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 45555543 346899999999999999999999999999999987
No 95
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=66.80 E-value=4.1 Score=32.02 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG 119 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (395)
+..+.++++.......++|.++|+.+|+.+|.|+-+..-.-|
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G 44 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 456788888888888899999999999999999988765443
No 96
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.65 E-value=8.1 Score=31.42 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..+.+...++|+.|++.|=.+.-+++-||.-|||++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999983
No 97
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=66.61 E-value=3.4 Score=31.12 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhcccchhcc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..++.+|.. .+.+...++++.|+ +.+--+|-+++.|+.-|+|+|..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 456676655 56799999999998 46778999999999999999875
No 98
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.60 E-value=3.1 Score=33.13 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 348999999999999999999999999999999873
No 99
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.32 E-value=2.4 Score=34.56 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.+|.. +.+...++|+.|++.+..++-.++.|+..|||++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 45555653 446788999999999999999999999999998763
No 100
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=65.84 E-value=3.4 Score=33.36 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+.++...++ ...++|+.|++.+=.+.-+++-||.-|+|+|..
T Consensus 41 ~iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 41 SILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 34455555443 999999999999999999999999999999873
No 101
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=65.42 E-value=4.4 Score=33.81 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|...-.+.+.+|+. ++.+...++|+.||+.+..++..++-|+.-|+|.+.
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33445678888865 467999999999999999999999999999999753
No 102
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=65.29 E-value=3.9 Score=37.87 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=38.2
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
+.+.+.++|+++++..|+++-+..+|..+|++++...+.|.=
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 679999999999999999999999999999999887666654
No 103
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=65.18 E-value=4.2 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
.+.++... +.+...++|+.|++.+-.+.-+++-||.-|||++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44445443 4599999999999999999999999999999998
No 104
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.00 E-value=4.5 Score=33.89 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|..+-.+.+.+|+. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 5 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34455678888876 467999999999999999999999999999999863
No 105
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=64.53 E-value=3.8 Score=33.50 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.+-.++-+++-||.-|+|+|..
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 5678999999999999999999999999999999863
No 106
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.44 E-value=4.5 Score=33.96 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=32.9
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+.+.++|+.|++.+-.++-+++-||.-|||+|.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 45889999999999999999999999999999985
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=63.51 E-value=5.5 Score=37.06 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
....+.+.++... +.+.+.++|+.|++.|..++-+++.|+.-|+|++...
T Consensus 152 ~~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 152 REEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3445566666543 4589999999999999999999999999999999743
No 108
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=63.10 E-value=4.7 Score=32.99 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 668999999999999999999999999999999873
No 109
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.73 E-value=5.1 Score=34.81 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|..+-++.+.+|+. ++.+...++|+.||+++-.+...++-|+.-|+|.+.
T Consensus 15 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 45566788888876 457999999999999999999999999999999864
No 110
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=62.21 E-value=6 Score=30.79 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCC-cccHHHHHHHhccceeehhhhHHHhhh
Q 016090 78 LTKKFINLIKHAEDG-ILDLNKAAETLEVQKRRIYDITNVLEG 119 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g-~ldLn~aA~~L~VqKRRIYDItNVLEg 119 (395)
+..++++++.+.... .++|.++|+.+++.+|.|+-+..-.-|
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456777888776654 899999999999999999887765443
No 111
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=61.84 E-value=3.4 Score=34.28 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+=.+.-+++-||.-|||+|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999873
No 112
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=61.83 E-value=7.2 Score=32.32 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+.+...++|+.|+|.+=.+-.+++.||.-|||++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578899999999999999999999999999998744
No 113
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=61.81 E-value=3.2 Score=32.96 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.++.++.. .+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 37 ~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 37 GVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 34445544 346899999999999999999999999999999986
No 114
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=61.74 E-value=4.8 Score=32.85 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLE 118 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLE 118 (395)
.+..++++++.+.....+.|.++|+.+++.+|.|+-+..-.-
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466789999998888889999999999999999988775443
No 115
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=61.68 E-value=5.3 Score=33.13 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+|+. ++.+...++|+.||+.+-.+...++.|+.-|+|++.
T Consensus 6 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 466777754 567999999999999999999999999999999873
No 116
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=61.65 E-value=4.8 Score=33.18 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.+.+.+.++|+.|++.+-.++-.++.||..|+|.+...
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 36689999999999999999999999999999987543
No 117
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=61.56 E-value=6.3 Score=33.48 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=33.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+...++|+.|++.+-.++-+++-||.-|||+|..
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 48999999999999999999999999999999873
No 118
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=60.80 E-value=17 Score=30.15 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444454443 456677 99999999999999999999999999999987554
No 119
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=60.67 E-value=7.4 Score=32.99 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+-+|-..+++.+.+.++|+.+++.++.+..|+..|...|||+..
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 3333444446678999999999999999999999999999999854
No 120
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=60.65 E-value=13 Score=32.00 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=23.5
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchh--ccCCeEEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK--KLKNRIRW 133 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~sKN~i~W 133 (395)
.+.+.++|+.+||+.+-|- -.|-.|||.- ...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR----~ye~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALR----YYDKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHH----HHHHCCCCCCCeECCCCCEe
Confidence 4678899999999887332 1256677742 34455554
No 121
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=60.52 E-value=4 Score=37.47 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=39.8
Q ss_pred HHHHHHhh--CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 81 KFINLIKH--AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 81 KFi~Ll~~--ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
|-+.+|.. ..++.+.+.++|+.|++.|=-+|-+++.|+..|+|++.. ..|
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y 66 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRW 66 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEE
Confidence 44444432 234679999999999999999999999999999999974 444
No 122
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=60.38 E-value=29 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=40.6
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+...+.+.+.. .|+..+ ...++|+.|+|+|=-+-.....|+.-|||+....
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 44555555543 466677 8999999999999999999999999999987643
No 123
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=60.28 E-value=3.7 Score=38.15 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
..+.|. +|.+.+.++|+++++..|.++-+..+|.++|++++..+..|.-.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 455553 36899999999999999999999999999999999877777653
No 124
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=59.57 E-value=14 Score=28.99 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 76 GLLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 76 glLTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
..+...+...+.. .++..+ ...++|+.|+|++=-+...++.|+.-|||++....
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 3455555554433 356667 99999999999999999999999999999887543
No 125
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=59.27 E-value=7.5 Score=35.80 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC-CeEE
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK-NRIR 132 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK-N~i~ 132 (395)
++.+.+.++|+.||+.|=-+|-+++.|+..|+|++... ..|+
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~ 61 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYR 61 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEE
Confidence 57899999999999999999999999999999999865 4553
No 126
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=59.20 E-value=8.4 Score=30.21 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCC-CcccHHHHHHHhccceeehhhhHHHh
Q 016090 78 LTKKFINLIKHAED-GILDLNKAAETLEVQKRRIYDITNVL 117 (395)
Q Consensus 78 LTkKFi~Ll~~ap~-g~ldLn~aA~~L~VqKRRIYDItNVL 117 (395)
...+.++++.+... ..++|.++|+.+|+++|.|.-+..-.
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35678888888877 89999999999999999998877543
No 127
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=59.04 E-value=8.4 Score=33.54 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+-+|-..+++.+...++|+.+++.+.-+.-|+..|..-|||+-.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4455555556788999999999999999999999999999999754
No 128
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=58.99 E-value=14 Score=34.24 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
+.+.+|.. +.+...++|+.|++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 45566653 5688889999999999999999999999999997
No 129
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=58.58 E-value=12 Score=33.07 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=42.7
Q ss_pred CcHHHHH-HHHHHHHh---hCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 73 SSLGLLT-KKFINLIK---HAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 73 ~SLglLT-kKFi~Ll~---~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.+|.... ....+.+. -.|+..+...++|+.|||+|=-|=+-+..|+.-|||+....
T Consensus 15 ~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 15 GSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp -CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 3444433 34444443 35788899999999999999999999999999999997643
No 130
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=58.32 E-value=6 Score=32.93 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
-+....+|+.+++.++.+..+++-|+.-|+|++...
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 379999999999999999999999999999999744
No 131
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=57.61 E-value=7.3 Score=33.90 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 74 SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.|..+-++++.+|+. ++.+...++|+.||+++..+...++-|+.-|+|++.
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 355666789998876 467999999999999999999999999999999863
No 132
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=57.49 E-value=3.6 Score=33.56 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+.+...++|+.|++.+-.+.-+++-||.-|||++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999874
No 133
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=57.27 E-value=17 Score=30.18 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=28.5
Q ss_pred eEEEeccCCCCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 130 RIRWKGLDNSIPGE-------VDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 130 ~i~W~G~~~s~~~~-------~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
-|.|.|.+..-... +.+++..|+..++.|......+-+.|..+.+.|+.+
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899965431111 233455555566666666666666666666666655
No 134
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=57.15 E-value=11 Score=29.74 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhcccee-ehhhhHHHhhhcccchhccCCeEEEe
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKR-RIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
..-.+.+.+|+.. |.....++|+.|++.+= -+=-..+.||.=|||++...++-.|.
T Consensus 11 ~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 4567888998875 45789999999999874 77778888999999998876666774
No 135
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=57.06 E-value=14 Score=29.94 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...+...+.. .++..+ ...++|+.|+|+|--+...++.|+.-|+|++....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44455555543 456667 89999999999999999999999999999877543
No 136
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=56.94 E-value=7.2 Score=33.16 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=46.5
Q ss_pred CCCCCCcHHHHHHH--HHHHHhhCCCCcccHHHHHHHh-ccceeehhhhHHHhhhcccchhcc
Q 016090 68 SCRYDSSLGLLTKK--FINLIKHAEDGILDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 68 ~~R~d~SLglLTkK--Fi~Ll~~ap~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.|.....|.+|..| ++-|..-. .|....+++++.| ++.++.+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 45566677777755 22222223 7889999999999 999999999999999999999984
No 137
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=56.60 E-value=4.7 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=36.9
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
++.+.+.++|+++++..|+++.+..+|.+.|++++. .+.|.=
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~~ 78 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYRL 78 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEec
Confidence 478999999999999999999999999999999873 455553
No 138
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=56.44 E-value=5 Score=37.83 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
.++.+.+.++|+++++..|.++-+..+|.++|++++ ..+.|.=
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 457899999999999999999999999999999999 5666543
No 139
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=55.39 E-value=32 Score=31.08 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=28.0
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccch--hc-cCCeEEEec
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KK-LKNRIRWKG 135 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~-sKN~i~W~G 135 (395)
..+.+.++|+.+||++|.|- -.|.+||+. +. ..|.|+.-.
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~ 46 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYT 46 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEE
T ss_pred CcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccC
Confidence 35788999999999988762 225678874 33 467777654
No 140
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=54.96 E-value=5 Score=38.33 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCe-EEE
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR-IRW 133 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~-i~W 133 (395)
+++.+.+.++|+++++..|.++-+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976666 543
No 141
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=54.59 E-value=3.7 Score=32.73 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=32.8
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999999986
No 142
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=54.40 E-value=33 Score=27.54 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=42.6
Q ss_pred CCCcHHHHHHH----HHHHHhhCCCCccc--HHHHHHHh-ccceeehhhhHHHhhhcccchhccC
Q 016090 71 YDSSLGLLTKK----FINLIKHAEDGILD--LNKAAETL-EVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 71 ~d~SLglLTkK----Fi~Ll~~ap~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
....|..|..+ .+.++. .|... ..++++.| ++.+..+...+..||.-|||+|...
T Consensus 17 ~~~~l~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TSSTHHHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 34567777644 223332 55656 99999999 9999999999999999999999754
No 143
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=53.65 E-value=11 Score=34.75 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=37.7
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEecc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 136 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~ 136 (395)
.+.+.+.++|+.|++.|--+|-+++.|+..|+|++.. ..|. .|.
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~ 77 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTP 77 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcH
Confidence 4679999999999999999999999999999999973 4453 443
No 144
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=52.62 E-value=8.7 Score=36.69 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc-cCCeEEEe
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRIRWK 134 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i~W~ 134 (395)
.+.+.+|+ .++.+...++|+.|+|+++-||--++.|+..|++... ...-|+..
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~ 61 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEe
Confidence 45667774 5678999999999999999999999999999998533 22245443
No 145
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=52.32 E-value=3.3 Score=33.36 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 468999999999999999999999999999999863
No 146
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=52.31 E-value=6.3 Score=36.97 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC--eEEE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN--RIRW 133 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN--~i~W 133 (395)
.+++|. ++.+.+.++|+++++..++++-+..+|...|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 445553 367999999999999999999999999999999986555 5543
No 147
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=52.18 E-value=43 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.0
Q ss_pred HhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 86 IKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 86 l~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+...++ .+...++|+.|++.|=.+--+++-||.-|||+|..
T Consensus 40 L~~~~~-~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 40 INRLPP-EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHSCT-TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCC-CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 434433 34668999999999999999999999999999873
No 148
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=52.14 E-value=9 Score=31.88 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHh--ccceeehhhhHHHhhhcccchhccCC
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETL--EVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...-++.+++|+. +|.+...++|+.| ++++-.+-.-+.+|+.-|||++....
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 34445788888865 3579999999999 99999999999999999999987444
No 149
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=51.96 E-value=7.9 Score=30.54 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+..+...++|+.|||.+=-+...++.|+.-|+|++.
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 435899999999999999999999999999999876
No 150
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=51.60 E-value=22 Score=29.28 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...+...+.. .++..+ ...++|+.|+|++--+-..+..|+.-|+|++....
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 44555555543 456677 59999999999999999999999999999987543
No 151
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.44 E-value=37 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 145 ~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
..++..|+..--.|+..|+.|+..|..+...|..|-.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3457788887778899999999999999998877743
No 152
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=51.21 E-value=14 Score=29.29 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|-..||++++. ..++.|.++|..|++..--.-+=++-||.-|.|.=.
T Consensus 8 ll~~Fi~yIk~--~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGV 54 (72)
T 1wi9_A 8 FLTEFINYIKK--SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGV 54 (72)
T ss_dssp HHHHHHHHHHH--CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHH--cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEE
Confidence 34899999988 468999999999999766666777778877766533
No 153
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=51.20 E-value=19 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 80 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 80 kKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
..+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|||++....
T Consensus 11 ~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 11 SLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 344444433 466677 89999999999999999999999999999987543
No 154
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=50.91 E-value=8.5 Score=30.44 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhcccchhcc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (395)
...+.++.. .+.+...++|+.|+ +.+=.+|-+++.||.-|+|+|..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 345555554 45689999999999 67999999999999999999874
No 155
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=50.80 E-value=8.1 Score=37.62 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.+|.+.+++.+.+.++|++|++.+=++=-+++-||.-|||+|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 344455555688999999999999999999999999999999997
No 156
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=50.11 E-value=8.3 Score=32.89 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
...-.+..++|+++++..+.|+.+++-|+.=|+|++.
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3455799999999999999999999999999999985
No 157
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=49.53 E-value=11 Score=32.13 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+-++.+.+|+. ++.+...++|+.||+++-.+..-++-|+.-|+|.+.
T Consensus 4 ~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 34677888865 678899999999999999999999999999999864
No 158
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=48.74 E-value=16 Score=32.18 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=37.1
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.|+..+.-.++|+.|||+|=-|=+.+..|+.-|||+.....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 57778999999999999999999999999999999976443
No 159
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=48.60 E-value=26 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=24.1
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccch--hccCCeEEEe
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWK 134 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~ 134 (395)
+.+.++|+.+||+.+.|.=. |-.||+. +...|.+++-
T Consensus 2 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y 40 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHY----DDIGLLVPSERSHAGHRRY 40 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHH----HHHTSSCCSEECSSCCEEB
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeec
Confidence 56788999999988766433 4557774 3345555543
No 160
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=48.54 E-value=11 Score=35.74 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.++|..+ ++.+.+.++|+++++..|.++.+..+|.++|++++. .+.|
T Consensus 41 fd~L~~~-~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y 87 (363)
T 3dp7_A 41 FQLLSGK-REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRY 87 (363)
T ss_dssp HHHHHTC-TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEE
T ss_pred HHHHHhc-CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEE
Confidence 3444332 478999999999999999999999999999999875 4443
No 161
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=48.09 E-value=13 Score=31.12 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~ 68 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNY 68 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHh
Confidence 3444566788899999887777899999999999999999953
No 162
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=47.46 E-value=7.8 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
++..+.+.++|+.|||+|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999987
No 163
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=47.18 E-value=10 Score=35.73 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
++.+.+.++|+++++..|+++.+..+|.+.|++++.. +.|.-.
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~t 104 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSLT 104 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEEC
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEecC
Confidence 4789999999999999999999999999999999874 455443
No 164
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=47.16 E-value=9.7 Score=35.59 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
++.+.+.++|+++++..+.++-+..+|...||+++.....|.-.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 46789999999999999999999999999999998666666543
No 165
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=45.44 E-value=57 Score=29.19 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=17.0
Q ss_pred EEEeeCCCCCeEEecCCCc
Q 016090 207 LIAIKAPQGTTLEVPDPDE 225 (395)
Q Consensus 207 vIAIKAP~gT~LEVPdP~e 225 (395)
+|.|+.-+.|.|++-..++
T Consensus 66 FIlV~T~k~t~I~ceISeD 84 (155)
T 2aze_A 66 FIIVNTSKKTVIDCSISND 84 (155)
T ss_dssp CEEEEEESSCCEEEEECTT
T ss_pred EEEEEcCCCCEEEEEEecC
Confidence 7999999999999998765
No 166
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.24 E-value=9.4 Score=33.50 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+....+.++|+.|++.+--++..++.||.-|+|++.
T Consensus 21 ~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 21 NGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred hCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 3557899999999999888999999999999999886
No 167
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.16 E-value=41 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 145 DADASILQADIDNLSMEELRVDEQTRELRERLR 177 (395)
Q Consensus 145 ~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~ 177 (395)
..++..|+.|++.|+.+-..|-+.+.++..+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999888888888774
No 168
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=44.89 E-value=13 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHHHhhCC-CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAE-DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+-+|-..+ ++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 3444444444 458999999999999999999999999999999843
No 169
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=44.42 E-value=61 Score=23.93 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 145 ~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
..+...|+.++..|..+-.+|-+.++...++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999988764
No 170
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=44.24 E-value=15 Score=30.39 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.+..=..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHH
Confidence 344456677889999988777789999999999999999994
No 171
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.05 E-value=5.8 Score=34.07 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhH
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDIT 114 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDIt 114 (395)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||--.
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F 81 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRW 81 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHC
Confidence 34444556777888988876667999999999999999999543
No 172
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=43.87 E-value=14 Score=32.92 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=38.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+|. ++.+...++|+.|++.+-.++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666775 367999999999999999999999999999999987
No 173
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=42.83 E-value=9.3 Score=30.89 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+++.+ ...++|+.|+|++=-+-..++.|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 999999999999999999999999999999875
No 174
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=42.83 E-value=79 Score=25.42 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHhhCCCCcccHHHHHHHh---c--cce-eehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETL---E--VQK-RRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L---~--VqK-RRIYDItNVLEgIGLIeK~ 126 (395)
+.+|...|.--.+|.+..... . +.. --||-+.+-||.-|||++.
T Consensus 19 L~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 445555444444444443322 2 888 9999999999999999876
No 175
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.71 E-value=46 Score=28.39 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=25.4
Q ss_pred CeEEEeccCCCCCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 129 NRIRWKGLDNSIPGEV-------DADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 129 N~i~W~G~~~s~~~~~-------~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
+-+.|.|.+..-.... ..++..|+..++.|......+.+.|..+...|+.+
T Consensus 81 ~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 81 NAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888654311112 23344455555555555555555555555555554
No 176
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=42.69 E-value=14 Score=34.27 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+..|...+++.+...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 344445554579999999999999999999999999999999973
No 177
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.23 E-value=17 Score=23.35 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.3
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhh
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEG 119 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEg 119 (395)
+...++|+.|+|.+.-||.+++-++.
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 57999999999999999998875543
No 178
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.20 E-value=39 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=24.4
Q ss_pred cHHHHHHHhccceeehhhhHHHhhhcccchh--ccCCeEEEe
Q 016090 95 DLNKAAETLEVQKRRIYDITNVLEGIGLIEK--KLKNRIRWK 134 (395)
Q Consensus 95 dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~sKN~i~W~ 134 (395)
.+.++|+.+||..|.|--. |-.||+.- ...|.++.-
T Consensus 2 ~I~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y 39 (135)
T 1q06_A 2 NISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTY 39 (135)
T ss_dssp CHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEEC
T ss_pred CHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeee
Confidence 5788999999988866422 56788753 345666643
No 179
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=42.06 E-value=13 Score=34.96 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=39.1
Q ss_pred HHHHhhCCCCcccHHHHHHHhcc---ceeehhhhHHHhhhcccchhc--cCCeEEE
Q 016090 83 INLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK--LKNRIRW 133 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~--sKN~i~W 133 (395)
.+.|... ++.+.+.++|+++++ ..|+++.+..+|..+|++++. ..+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 4444432 357999999999999 588999999999999999987 3455554
No 180
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=41.92 E-value=11 Score=29.04 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccch
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (395)
+++.+.+.++|+.|++.|=.++-+++.||.-|||.
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 34468999999999999999999999999999993
No 181
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=41.89 E-value=11 Score=27.83 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=29.2
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccC--CeEEEec
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK--NRIRWKG 135 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK--N~i~W~G 135 (395)
.++..++|+.|||+++.||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 467899999999999999999874 65 3333333 3666663
No 182
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.16 E-value=18 Score=30.12 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+++|..+.++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 35677766554789999999999 788999999999999999999875
No 183
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=40.44 E-value=54 Score=29.81 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHHh-hCCCCc---------------ccHHHHHHHhcc-ceeehhhhHHHhhhcccch
Q 016090 71 YDSSLGLLTKKFINLIK-HAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIE 124 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIe 124 (395)
++.+...|-++|..|.+ -.||.. .-||+|=+.|.= .||+.||. -|.|+.+-+
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~ 123 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPE 123 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccc
Confidence 45688899999999864 355542 357778788875 78889997 455665543
No 184
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.41 E-value=21 Score=29.52 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhccC
Q 016090 82 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.+++|..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 56667654 6689999999999 8899999999999999999998753
No 185
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=39.82 E-value=21 Score=31.97 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHH
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
+..+|++++.+.....+.|.++|+.+++++|.+..+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56789999999888899999999999999999988763
No 186
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=39.42 E-value=90 Score=26.51 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016090 146 ADASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (395)
Q Consensus 146 ~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lt 180 (395)
.++..||+||+.++.+.++|-+.-..-.+.+|+..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888877666555555543
No 187
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.38 E-value=6.8 Score=30.36 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL 122 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL 122 (395)
+.|.++... .-..+.++|..|||.+..||-++.-+..-|.
T Consensus 13 ~~v~~~~~~--~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 13 DAVALYENS--DGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp HHHHHHTTG--GGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred HHHHHHHHc--CCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 455555321 1368999999999999999999987766444
No 188
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=38.80 E-value=24 Score=28.86 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
+..+...+.++++. ++.+++.++-+.||++|+..-=|..-|..+|+..|++-.++
T Consensus 64 ~~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 64 IVEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 33344555555554 48899999999999999999999999999999988865444
No 189
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=38.74 E-value=58 Score=25.99 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=24.3
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccch--hccCCeEEE
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRW 133 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W 133 (395)
+.+.++|+.+||+.+.|.-. |-.||+. +...|.+++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~ 40 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRL 40 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEE
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCee
Confidence 57889999999998877433 4467774 223455554
No 190
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=38.26 E-value=19 Score=32.59 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHhh---CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 78 LTKKFINLIKH---AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+...+.+.+.. .|+..+...++|+.|||+|=-|-.-++.|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555554433 5788899999999999999999999999999999998744
No 191
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=38.02 E-value=21 Score=29.42 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhc----cceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLE----VQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.++.+|... .+.+...++++.|+ +.+=.+|-+++-||.-|+|+|..
T Consensus 13 ~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 13 AVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 456666553 35689999999998 78889999999999999999874
No 192
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.47 E-value=79 Score=23.56 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lt 180 (395)
+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887788888877777766553
No 193
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=37.23 E-value=16 Score=29.55 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccc----eeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQ----KRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIGLIeK~s 127 (395)
.++.+|.. .+.+...++++.|+.. +=-+|-+++-||.-|+|+|..
T Consensus 39 ~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 39 IVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45666654 4468999999999864 568999999999999999874
No 194
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=37.04 E-value=28 Score=28.53 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=36.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 70 R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 56 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYY 56 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHh
Confidence 34445567888899999887777899999999999999999943
No 195
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=36.91 E-value=20 Score=29.78 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.+...++|+.|++.|=.+--+++-||.-|||++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999999654
No 196
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=36.90 E-value=23 Score=30.91 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHh-hCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIK-HAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~-~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.+-+|- ...++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3333443 334568999999999999999999999999999999854
No 197
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=36.58 E-value=14 Score=32.86 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
.+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 34789999999999999999999865
No 198
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=36.28 E-value=51 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHH-HhhCCCCcccHHHHHHHhccceeehhhhHH
Q 016090 73 SSLGLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 73 ~SLglLTkKFi~L-l~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
..|..+-+++|.. |... +| +..+||+.||+.|+.||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~-~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMC-DR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHT-TS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHh-CC--CHHHHHHHhCCCHHHHHHHHH
Confidence 4577777777754 4443 33 467999999999999997654
No 199
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.02 E-value=17 Score=23.89 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=20.0
Q ss_pred ccHHHHHHHhccceeehhhhHH
Q 016090 94 LDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItN 115 (395)
+.+.++|+.|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998764
No 200
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.56 E-value=13 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||++|..++-+.+-|+.-|+|++. +++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5677999999999999999999999999999865 55554
No 201
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.37 E-value=24 Score=28.77 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRERLRE 178 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~ 178 (395)
...|+++++.|+.+...|+..|..+..+|++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578888888888888888888887766653
No 202
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=35.22 E-value=14 Score=30.53 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...+...+.. .++..+ ...++|+.|+|+|--+-..++.|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 44455555543 456677 89999999999999999999999999999987544
No 203
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.17 E-value=68 Score=25.68 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 144 VDADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 144 ~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
+-..+..|+.||..|..+-+.+.-.|..++++-+++-.|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777777777777766443
No 204
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=35.10 E-value=19 Score=32.52 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 116 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 116 (395)
+..++++++.+..+..++|.++|+.+++++|.|.-+..-
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~ 42 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567889999998899999999999999999999888543
No 205
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.09 E-value=72 Score=25.44 Aligned_cols=98 Identities=9% Similarity=0.145 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEeccCCCC-C-----CCchHHH
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSI-P-----GEVDADA 148 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~-~-----~~~~~~~ 148 (395)
+-.+..+|-.+-... -.|..--..|..+++++-++.+=|+. +.- ..+.|+=+|.-... + ..+..++
T Consensus 8 ~Q~~i~~~~~l~~~~----~~l~~q~~~l~~~~~e~~~~~~eL~~---l~~-d~~vy~~iG~vfv~~~~~ea~~~L~~~~ 79 (117)
T 2zqm_A 8 VQAMLGQLESYQQQL----QLVVQQKQKVQLELTEAKKALDEIES---LPD-DAVVYKTVGTLIVKTTKDKAVAELKEKI 79 (117)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT---SCT-TCCEEEEETTEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc---CCC-CcHhHHHhhHHHhhccHHHHHHHHHHHH
Confidence 334445555554331 12222233344455555555555544 432 23456556632211 1 0122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016090 149 SILQADIDNLSMEELRVDEQTRELRERLRELI 180 (395)
Q Consensus 149 ~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lt 180 (395)
..+..+++.|..+...+...+..++..|+.+.
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555665555555543
No 206
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.02 E-value=26 Score=31.35 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 577899999999999999999999999999999999854
No 207
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=34.94 E-value=28 Score=24.43 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.++.. ++.+...++++.| +|.++-||-.++ .+|++ |.
T Consensus 11 ~~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 11 REIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 344544 4679999999999 999999998777 55777 54
No 208
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.70 E-value=24 Score=31.89 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=39.0
Q ss_pred HHHHHHHHHH-HHhhCCCCcccHHHHHHHhccceeehhhhHH-HhhhcccchhccC
Q 016090 75 LGLLTKKFIN-LIKHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLK 128 (395)
Q Consensus 75 LglLTkKFi~-Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sK 128 (395)
|...-++++. +++...+..+.+..+|+.||+.+..+|.... -|...|+|++..+
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 3334445554 4455566678999999999999999999554 3777889876643
No 209
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=34.56 E-value=17 Score=34.23 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc---ceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEV---QKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~ 126 (395)
.++.|... ++.+.+.++|+++++ ..|+++-+..+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445443 357999999999999 588999999999999999987
No 210
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.20 E-value=30 Score=28.72 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 444556788889999988777789999999999999999994
No 211
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=33.59 E-value=2.5e+02 Score=24.81 Aligned_cols=109 Identities=18% Similarity=0.239 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHhh-CCCCc-------ccHHHHHHHhcc-ceeehhhhHHHhhhcccchhccCCeEEEeccC
Q 016090 67 GSCRYDSSLGLLTKKFINLIKH-AEDGI-------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 137 (395)
Q Consensus 67 ~~~R~d~SLglLTkKFi~Ll~~-ap~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~ 137 (395)
+..+++.+...|-+.|..|.+. .||.. .-|++|=+.|.= .+|+.||..= +.|+.+-.-.... ...
T Consensus 24 ~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~ 97 (181)
T 3uo3_A 24 KLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVT 97 (181)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----ccc
Confidence 3445788999999999999754 66643 468999888876 8999999731 1455544321000 000
Q ss_pred CCCCCCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 138 NSIPGEVDADASILQADIDN------LSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 138 ~s~~~~~~~~~~~Lq~El~~------L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
...+ ++.-++-.++++|+. |..-..++++.|..|.++|....+.
T Consensus 98 ~~d~-~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 98 TSDP-QLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp HTCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011 222223344454443 4444455666677777777776654
No 212
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=33.49 E-value=22 Score=33.07 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=35.4
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+.+.++|+++++..|.++-+..+|..+|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 5544
No 213
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.37 E-value=99 Score=24.60 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
...|...++.+...-..|...+..++.++.++..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777777776643
No 214
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=33.34 E-value=18 Score=34.26 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=32.0
Q ss_pred cccHHHHHHHhcc------ceeehhhhHHHhhhcccchhc
Q 016090 93 ILDLNKAAETLEV------QKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 93 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.++|+++++ ..|+++.+..+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999987
No 215
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.33 E-value=26 Score=30.38 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 69 ~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
.|...+=..|..-.++++.+..-.-+.+.++|+.+||.|.-||--
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~ 65 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWY 65 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTT
T ss_pred cccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
Confidence 344455577888889999887666799999999999999999953
No 216
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=33.09 E-value=29 Score=30.12 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=33.3
Q ss_pred cccHHHHHHHhcccee-ehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKR-RIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||++|| .+.-+.+-|+.-|+|++.. ++|.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~-~~i~ 208 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-SCFY 208 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 4567899999999998 9999999999999998873 4443
No 217
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.01 E-value=21 Score=31.60 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 80 KKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 80 kKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+.+.+.. .|+..+ .-.++|+.|||+|=-+-.-+..|+.-|||++..
T Consensus 14 ~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 14 EYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 444444443 467788 799999999999999999999999999999774
No 218
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=32.95 E-value=21 Score=29.20 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 47888999999999999999999999999999999975
No 219
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=32.90 E-value=37 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.7
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+...++|..||+.+..+.-+.+-|+.-|+|++..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 678999999999999999999999999999887443
No 220
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=32.70 E-value=22 Score=34.70 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.7
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+.++++... ..+.+..+++.++|+++-+.-.++-|+..|+|++..+
T Consensus 301 ~ll~~l~~~--p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~ 346 (373)
T 2qc0_A 301 ELVQVIFEQ--PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp HHHHHHHHC--SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred HHHHHHHhC--CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 344444443 4678889999999999999999999999999998753
No 221
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.52 E-value=11 Score=33.30 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=33.5
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+...++|+.|++.+-.+.-+++-||.-|||+|..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999874
No 222
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=32.28 E-value=13 Score=30.71 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=37.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 68 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 68 ~~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|.+..-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 14 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 58 (216)
T 3qqa_A 14 SQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYD 58 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHH
Confidence 445555666778889999988777789999999999999999883
No 223
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.90 E-value=93 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELR 173 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~ 173 (395)
+..|++|+..|..+-..|.-.|..+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777766666655555443
No 224
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.75 E-value=71 Score=25.15 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=30.9
Q ss_pred HhccceeehhhhHHHhhhcccchhccCCeEEEeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 102 TLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 102 ~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
.|..+++.+-++.+=|+.+ .- ....|+=+|.-... ....+-...|...++.+...-..|+..+..++..|.++
T Consensus 26 ~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~vfv~-~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 26 TVEMQINETQKALEELSRA---AD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444 32 23355556632211 12222233444444444444444444444444444433
No 225
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=31.51 E-value=30 Score=30.23 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=34.5
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
.+...++|..||++|..+.-+.+-|+.-|+|++.. ++|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 46789999999999999999999999999999864 44543
No 226
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.34 E-value=20 Score=36.33 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=5.7
Q ss_pred hhhHHHhhhcccch
Q 016090 111 YDITNVLEGIGLIE 124 (395)
Q Consensus 111 YDItNVLEgIGLIe 124 (395)
.+|-|.-+.+-..-
T Consensus 48 ~elsn~ts~v~~Lv 61 (409)
T 1m1j_C 48 QQATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 227
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=31.22 E-value=49 Score=27.68 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..-+.+-+|-..+++ .+.++|+.+++..+.+..|+.-|.--|||+-.
T Consensus 10 yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 10 VAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 333444444444443 99999999999999999999999999999754
No 228
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=31.00 E-value=40 Score=27.67 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 69 ~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|....-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 13 RRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 34445556788889999988777789999999999999999995
No 229
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.85 E-value=34 Score=31.61 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+..|.....+.+...++|+.|++.+-.+--+++=||.-|+|+|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 34444444567899999999999999999999999999999987
No 230
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.65 E-value=39 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.384 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
=..|-..+++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 15 r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 15 QKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 35677788999988766689999999999999999994
No 231
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.47 E-value=75 Score=26.96 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERLR 177 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~ 177 (395)
++..|+++++.|....+.|+..|..+++.+.
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 232
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=30.46 E-value=29 Score=31.26 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.|+..|.-.++|+.|||+|=-|=+-+..|+.-|||+.....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 47778999999999999999999999999999999977543
No 233
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=30.41 E-value=27 Score=33.23 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
..++|.+. .+.+++.++|+++++..+.++-+..+|.++|++++...
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc
Confidence 34455444 46899999999999999999999999999999986543
No 234
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.09 E-value=1.3e+02 Score=22.15 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lt 180 (395)
+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777777766653
No 235
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=30.08 E-value=44 Score=27.35 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhH
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDIT 114 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDIt 114 (395)
=..|..-.++++.+..-.-+.+.++|+..||.|.-||--.
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHc
Confidence 3557777888998877778999999999999999999543
No 236
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=29.96 E-value=28 Score=33.19 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc--cee---ehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEV--QKR---RIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIGLIeK~ 126 (395)
..+.|..+.++.+.+.++|+++++ ..| .++-|..+|-++|++++.
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 455565655578999999999998 777 899999999999999986
No 237
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.72 E-value=43 Score=26.84 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
...-..|...+++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 48 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFH 48 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 33446678889999988777789999999999999999994
No 238
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.69 E-value=81 Score=24.36 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 146 ADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 146 ~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
+-+..|+.+++.|..+-..|.+.+..++++|..|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888877777777777777777665
No 239
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=29.63 E-value=43 Score=30.36 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|++...
T Consensus 14 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 14 IASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp HHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 55666666654 456677 8999999999999999999999999999998743
No 240
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=29.53 E-value=26 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=34.1
Q ss_pred CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
.|+..+ .-.++|+.|||+|=-+=+.+..|+.-|||+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 467788 5889999999999999999999999999997
No 241
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=29.48 E-value=47 Score=30.15 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+...+.+.+.. .++..+ ...++|+.|+|+|=-+-..++.|+.-|+|.+..
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 44445555544 366677 899999999999999999999999999999763
No 242
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.47 E-value=36 Score=28.83 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=33.5
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3556899999999999999999999999999876 45554
No 243
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.46 E-value=39 Score=31.57 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccccc
Q 016090 146 ADASILQADIDNLSMEELRVDEQTRELRERLRELIENENN-RKWLFV 191 (395)
Q Consensus 146 ~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n-~~~aYV 191 (395)
++.+.|++|+..|+.+..+++++..+ .++|+.|.+-... ..|-|+
T Consensus 26 ~eN~~Lk~e~~~l~~~~~~~~~l~~E-n~rLr~lL~~~~~~~~~~~i 71 (255)
T 2j5u_A 26 TENQHLKERLEELAQLESEVADLKKE-NKDLKESLDITDSIRDYDPL 71 (255)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccccCceE
Confidence 34568889999888888888876654 4567777665443 334443
No 244
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.45 E-value=28 Score=34.22 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceE--EEeeCCCCCeEEe
Q 016090 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTL--IAIKAPQGTTLEV 220 (395)
Q Consensus 143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTv--IAIKAP~gT~LEV 220 (395)
.+.++.++|.+|+..|+..-...+..|+.++..|..+...-...+-.....+..+..+| ..++ -.-..++..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~dC~~i 79 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC--QDTTANKISPITGKDCQQV 79 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--EEHHHHTBCSCCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCCcCHHHH
Q ss_pred cCCCcccCCCCCceEEEEecCCCceEEE
Q 016090 221 PDPDEAVDYPQRRYRIILRSTMGPIDVY 248 (395)
Q Consensus 221 PdP~e~~~~~~~~YqI~LkS~~GPIdVy 248 (395)
........ .-|.|+......|+.||
T Consensus 80 ~~~g~~~S---GvY~I~p~~~~~pf~V~ 104 (323)
T 1lwu_C 80 VDNGGKDS---GLYYIKPLKAKQPFLVF 104 (323)
T ss_dssp HTTTCCSS---EEEEECCTTCSSCEEEE
T ss_pred HhcCCCCC---eEEEEecCCCCCcEEEE
No 245
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=29.09 E-value=78 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHH-HhhCCCCcccHHHHHHHhccceeehhhhHH
Q 016090 74 SLGLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 74 SLglLTkKFi~L-l~~ap~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
.+..+-+.+|.. |... | +..+||+.||+.|+.||.-+.
T Consensus 17 ~l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 355566666654 4554 3 678999999999999997654
No 246
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.00 E-value=40 Score=28.29 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhccC
Q 016090 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
..+++|..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.|..-
T Consensus 26 ~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 26 AILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 356667664 5678999999999 7889999999999999999998753
No 247
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=28.95 E-value=41 Score=29.64 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhc-cceeehhhhHHHhhhcccchhccC
Q 016090 82 FINLIKHAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.+.++...+.+...+.++++.++ +.+=-||--.+.|+..|||++...
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~ 81 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPV 81 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeec
Confidence 44556677888899999999999 999999999999999999998743
No 248
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=28.58 E-value=20 Score=27.55 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCCcccHHHHHHHhccceeehhhhHH
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITN 115 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItN 115 (395)
....+.+.+||+-|++.+..+|.+++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 35679999999999999999999874
No 249
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.51 E-value=41 Score=28.22 Aligned_cols=39 Identities=8% Similarity=0.159 Sum_probs=33.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 201 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTVE 201 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 4678999999999999999999999999999865 45443
No 250
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.50 E-value=41 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 70 R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
|.+..=..|....++++....-.-+.+.++|+..||.|.-||-
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHH
Confidence 3344456788889999988777789999999999999999993
No 251
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=28.38 E-value=40 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|...+++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 3567788999988877789999999999999999994
No 252
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.25 E-value=1.1e+02 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016090 149 SILQADIDNLSMEELRVDEQTRELRERLRELIENE 183 (395)
Q Consensus 149 ~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~ 183 (395)
..|.+||..|..++..||..|..++..++.|-..+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 35567888888889999999999888888875543
No 253
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=28.21 E-value=33 Score=29.16 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=34.6
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
.+...++|..||+.+..+.-+.+-|+.-|+|++..++.|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 46779999999999999999999999999999862335543
No 254
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.81 E-value=1.3e+02 Score=23.52 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
.+..++..+..+++.|..+...+...+..++..|+.+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999865
No 255
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.65 E-value=60 Score=30.74 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 142 GEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 142 ~~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
.++++++..|.+.++.+.+.|+.....|+.+.++|++|-+.
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999664
No 256
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.51 E-value=64 Score=32.12 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccccccccccHHHHhh
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERLRELIEN----ENNRKWLFVTEEDIKN 198 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted----~~n~~~aYVT~eDI~~ 198 (395)
++..|++|++.|+++-.+|++.|+.++.+++.+.+- +.-++-+|-.-+|+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355677777777777777777777777776665442 2223445555555553
No 257
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=27.46 E-value=43 Score=26.76 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYL 47 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHH
Confidence 4567778999988777789999999999999999993
No 258
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.42 E-value=24 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
+..-..|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 42 ~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 42 AERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 33445677889999988777789999999999999999995
No 259
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.37 E-value=1.5e+02 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
...|+.+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666554443
No 260
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=27.32 E-value=21 Score=29.79 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
+..-..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 22 EEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 333455667788888887666899999999999999999953
No 261
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=27.18 E-value=39 Score=29.49 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=35.3
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhc--------------cceeehhhhHHHhhhcccchhccC
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLE--------------VQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
..+.+++...+.|. .++|+.+| |++=-|-.++..||..|||++..+
T Consensus 57 ~~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 57 SILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 33444454545554 99999999 777779999999999999998743
No 262
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=27.11 E-value=29 Score=28.55 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=35.0
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 69 ~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 34444556777888889888777789999999999999999994
No 263
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.91 E-value=50 Score=26.42 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
=..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 8 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 46 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHF 46 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHH
Confidence 345777888999887777899999999999999999943
No 264
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=26.90 E-value=44 Score=29.72 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 68 SCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 68 ~~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|...+-..|..--++++.+..-.-+.+.++|+.+||.|.-||-
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 68 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHH
Confidence 344555667788889999977666689999999999999999994
No 265
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.80 E-value=38 Score=26.67 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhcc----ceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEV----QKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~s 127 (395)
.++.++-.. +.+...++|+.|++ .+--++-+++-||.-|+|+|..
T Consensus 14 ~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 14 DVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 456666553 45899999999985 6889999999999999999874
No 266
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=26.45 E-value=21 Score=31.93 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+.+.+.+||+.|++.+=.+--.+.-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999999999999999999999973
No 267
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.40 E-value=1.1e+02 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 150 ILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 150 ~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
-|+..++.|...-+.|.+.+..+++++..+.+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665543
No 268
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.30 E-value=1.3e+02 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.045 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 148 ASILQADIDNLSMEELRVDEQTRELRER 175 (395)
Q Consensus 148 ~~~Lq~El~~L~~~E~~LD~~I~~~~q~ 175 (395)
+..||..+.....+-+..|..|+.+..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~ 48 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELE 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333333333
No 269
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.27 E-value=32 Score=29.23 Aligned_cols=46 Identities=13% Similarity=0.370 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+++|..+.++.+...++.+.| .+.+=-||-.++.|+..|||.|..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666765543678999999998 788889999999999999999874
No 270
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=26.23 E-value=54 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
=..|-...++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 19 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 19 KQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 34577778889988777789999999999999999994
No 271
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=26.16 E-value=35 Score=27.29 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 73 SSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 73 ~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..-..|..-+++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 3345566778889888766789999999999999999984
No 272
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.15 E-value=36 Score=27.34 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
....-..|....++++....-.-+.+.++|++.||.|.-||-
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 344446677888899988766689999999999999999994
No 273
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=26.04 E-value=47 Score=28.27 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 33 ~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 69 (230)
T 2iai_A 33 ETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp SCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHH
Confidence 3467788888888777789999999999999999994
No 274
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=26.01 E-value=44 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
....-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 6 IGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 344456788889999988766789999999999999999984
No 275
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=25.91 E-value=1.1e+02 Score=26.18 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=25.9
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchh-ccCCeEEEe
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK-KLKNRIRWK 134 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK-~sKN~i~W~ 134 (395)
..+.+.++|+.+||..|.|.= .|.+|||.- ...|.|+.-
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~----ye~~Gll~p~r~~~g~R~Y 49 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHF----YESKGLITSIRNSGNQRRY 49 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHH----HHHTTSSCCEECTTSCEEB
T ss_pred cCCCHHHHHHHHCcCHHHHHH----HHHcCCCCcccCCCCCEEe
Confidence 358899999999999886642 255677642 234555554
No 276
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=25.78 E-value=55 Score=26.19 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
....=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 8 ISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 334456678888999988766789999999999999999994
No 277
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.68 E-value=1.2e+02 Score=22.30 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
.+..|+.+++.|..+-..|...|..+.+++..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777777776655
No 278
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=25.47 E-value=48 Score=27.45 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
..|...+++++....-.-+.+.++|+..||.|.-||
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 457777899998887778999999999999999998
No 279
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.46 E-value=1.4e+02 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHh-hCCCCcc----------cHHHHHHHhcc-ceeehhhh
Q 016090 71 YDSSLGLLTKKFINLIK-HAEDGIL----------DLNKAAETLEV-QKRRIYDI 113 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~-~ap~g~l----------dLn~aA~~L~V-qKRRIYDI 113 (395)
.+.+...|-+.|..|.+ -.||..- .|++|=+.|.- .||+.||-
T Consensus 27 ~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~ 81 (99)
T 2yua_A 27 STATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDR 81 (99)
T ss_dssp TTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 45688889999999875 4566543 36777777766 88999995
No 280
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.45 E-value=1.4e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 154 DIDNLSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 154 El~~L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
||+.-..+-..|.+.|...++.|++|..+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444445555566666667766543
No 281
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=24.67 E-value=11 Score=30.85 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 70 R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
|....-..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 17 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 17 AQRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHH
Confidence 33444456777788888776555799999999999999999953
No 282
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=24.40 E-value=54 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=33.3
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.+...++|..||+.|..+.-+.+-|+.-|+|++. ++.|
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i 254 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTI 254 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc-CCEE
Confidence 4567999999999999999999999999999976 4444
No 283
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=24.36 E-value=1.8e+02 Score=25.49 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHh-hCCCCc---------------ccHHHHHHHhcc-ceeehhhhHHHhhhcccchhccCCeEEEecc
Q 016090 74 SLGLLTKKFINLIK-HAEDGI---------------LDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 136 (395)
Q Consensus 74 SLglLTkKFi~Ll~-~ap~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~ 136 (395)
....|-++|..|.+ -.||.. .-||+|=+.|.= .||+.||.. |.|+.+-.-. +
T Consensus 19 d~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~------- 87 (174)
T 3hho_A 19 DGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ--Q------- 87 (174)
T ss_dssp CHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC-------------
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc--C-------
Confidence 37888889998865 355542 336777777765 899999974 4566554321 0
Q ss_pred CCCCCCCchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 137 DNSIPGEVDADASILQADIDN----------LSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 137 ~~s~~~~~~~~~~~Lq~El~~----------L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
....+ ++.-.+-.+.++++. |..-..++++.++.|.++|....++
T Consensus 88 ~~~d~-~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 88 TLQDP-MFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp CCCCH-HHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111 222223344444443 4445556777777777777777664
No 284
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=24.35 E-value=52 Score=27.38 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 205 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIV 205 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC-CCEEE
Confidence 4677999999999999999999999999999976 44443
No 285
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.35 E-value=68 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 74 SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 51 (199)
T 3on2_A 13 LRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSK 51 (199)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCC
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHH
Confidence 335677788888887766689999999999999999983
No 286
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=24.30 E-value=22 Score=31.95 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=31.6
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
....++|+.|++.+-.+..+++-||.-|||++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34499999999999999999999999999999753
No 287
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=24.23 E-value=43 Score=28.78 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.5
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccch
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIE 124 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 124 (395)
+.-+|..+.+..|..||-|.|.+..|.++|+.-
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 445999999999999999999999999999753
No 288
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.92 E-value=67 Score=28.97 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 78 LTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+...
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 34445555543 456677 8999999999999999999999999999998643
No 289
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.84 E-value=57 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+++|..+ ++.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 56666665 4578999999998 788999999999999999999874
No 290
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.83 E-value=50 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+++|.+++ +.+...++.+.| .+.+=-+|-.++.|+..|||.|..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566676654 588999999998 588889999999999999999874
No 291
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.77 E-value=41 Score=31.11 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=39.2
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
++.....++|+.|++..+-+-..++-|.-.|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 5788999999999999999999999999999999887777753
No 292
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=23.59 E-value=83 Score=27.72 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 70 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 70 R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
|...+-..|....++++....-.-+.+.++|+.+||.|.-||-
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 3445567788899999988777789999999999999999995
No 293
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.24 E-value=72 Score=30.54 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016090 145 DADASILQADIDNLSMEELRVDEQTRELRERLRELIEN 182 (395)
Q Consensus 145 ~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted 182 (395)
+.++..|+.++..|..+..+|-+.++.++++|..|.+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688899999999999998988899998888888654
No 294
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.20 E-value=46 Score=26.85 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|....++++.+..-.-+.+.++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 466778888888777789999999999999999995
No 295
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=22.85 E-value=52 Score=26.74 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 71 YDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 71 ~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.+..-..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYP 55 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhh
Confidence 344445778888999988777789999999999999999984
No 296
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=22.81 E-value=1.9e+02 Score=26.09 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE-Ee
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR-WK 134 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~-W~ 134 (395)
++.+++|+ .|......+|..||++==.++=++=+||-=|+|.+....+.. |.
T Consensus 14 ~~ILE~Lk---~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~ 66 (165)
T 2vxz_A 14 RDILALLA---DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVC 66 (165)
T ss_dssp HHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred HHHHHHHH---hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEE
Confidence 45788887 899999999999999999999999999999999976554443 44
No 297
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=22.69 E-value=21 Score=30.20 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
+..+-++.+..++ +++.+...++|+.|||++--+...+..|+.-|+|++
T Consensus 11 ~d~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3445566676554 466779999999999999999999999999999986
No 298
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.59 E-value=57 Score=26.19 Aligned_cols=31 Identities=32% Similarity=0.702 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERLR 177 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~ 177 (395)
+...|+.|+..+.+--.++...|+++.+.|+
T Consensus 45 E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666555555555555555554
No 299
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=22.48 E-value=47 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
.|....++++.+..-.-+.+.++|++.||.|.-||--
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 4566788888776666799999999999999999954
No 300
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=22.40 E-value=62 Score=23.43 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 116 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 116 (395)
|..+-+.+|.-.-..-+| +..+||+.|||.|+.||.-+.-
T Consensus 16 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 16 KKEFEKIFIEEKLREYDY--DLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 344455565543332333 4679999999999999987653
No 301
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=22.38 E-value=66 Score=27.71 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=34.0
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|+.||+.|..+.-+.+-|+.-|+|++. ++.|.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~-~~~i~ 224 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH-RKEIL 224 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE-TTEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec-CCEEE
Confidence 3678999999999999999999999999999876 45554
No 302
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.36 E-value=1.4e+02 Score=22.34 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERL 176 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L 176 (395)
.+..|+.+...|..+-..|...+.++.+-|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 303
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=22.23 E-value=50 Score=32.51 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
++++++.. .+.+....+++.++++++...-.++-|...|++++..
T Consensus 301 ~ll~~l~~--~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 301 ELVQVIFE--QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHH--CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHH--CCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 34555544 3468899999999999999999999999999998864
No 304
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.11 E-value=53 Score=26.95 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 74 SLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 74 SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.=..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 10 ~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (193)
T 2dg8_A 10 RRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhe
Confidence 335677889999988777789999999999999999994
No 305
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.07 E-value=64 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHH
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNV 116 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNV 116 (395)
..+-+.+|...-..-+| +..+||+.|||.|+.||.-+.-
T Consensus 49 ~~~E~~~i~~aL~~~~g--n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 49 PELERTLLTTALRHTQG--HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTT--CTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 33445555543333333 3458999999999999976543
No 306
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.05 E-value=25 Score=28.57 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=33.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 69 ~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
.|.+..=..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 10 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 10 DKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 344445567778888888776555799999999999999999954
No 307
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=21.99 E-value=43 Score=26.81 Aligned_cols=37 Identities=8% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 4466778888888766789999999999999999995
No 308
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.92 E-value=96 Score=25.50 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 33345677778889988777789999999999999999994
No 309
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.89 E-value=19 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|-..+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 33 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 69 (212)
T 2np3_A 33 EAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHH 69 (212)
T ss_dssp --CHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHH
Confidence 4566778899887776789999999999999999984
No 310
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.77 E-value=39 Score=28.82 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=33.7
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||+++..+.-+.+-|+.-|+|++. +++|.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS-PRSVT 213 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSCEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 3578999999999999999999999999999876 44443
No 311
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.51 E-value=62 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016090 157 NLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 157 ~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
.|+-+.+.|++.|..+.|.+..|
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555444
No 312
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=21.35 E-value=67 Score=25.52 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHhhCCCCcccH-HHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 81 KFINLIKHAEDGILDL-NKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
-.+.+|...|..-.+| ..+++.+++..-.||-++.-||.-|||++.
T Consensus 13 ~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 13 LILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 3445555544333444 334455789999999999999999999986
No 313
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.97 E-value=1.1e+02 Score=30.74 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 149 SILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 149 ~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
..|++|+..|.++..+|++.|+.++..++.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777766666544
No 314
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=20.87 E-value=39 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=33.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
.+...++|..||+.+..+.-+.+-|+.-|+|++. ++.|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 202 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMV 202 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 3677899999999999999999999999999876 45554
No 315
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.83 E-value=89 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred CcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 92 GILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 92 g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
|.+++..++..+ ++....+++.++.|+..|||++. .+.|+
T Consensus 294 g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~ 338 (350)
T 2qen_A 294 GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYK 338 (350)
T ss_dssp TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEE
Confidence 446788888777 78888999999999999999886 24443
No 316
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=20.67 E-value=1e+02 Score=29.97 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCcHHHHHHH------HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 72 DSSLGLLTKK------FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 72 d~SLglLTkK------Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
-+-||++.-+ .+++|....++.+.|+++++..++. .-||+..|+.+|++..
T Consensus 187 LSDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 187 LSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 3467887733 5666666677889999999999984 5799999999999963
No 317
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.49 E-value=47 Score=30.32 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCCe
Q 016090 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 130 (395)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (395)
.++..+ .-.++|+.++|+|=-+-..++.|+.-|||.+.++..
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt 73 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTT 73 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEE
Confidence 455567 899999999999999999999999999999944443
No 318
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=20.22 E-value=89 Score=28.97 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 77 LLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 77 lLTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|||++..
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 355556666654 356677 899999999999999999999999999998764
No 319
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.18 E-value=3.5e+02 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
++..++..|+.|++-|..++..|.+.++.++.+++.+.+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888887777777777665544
No 320
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=20.13 E-value=59 Score=27.74 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
=..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 15 r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~ 52 (231)
T 2qib_A 15 RQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYH 52 (231)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 34577778999988777789999999999999999993
No 321
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.08 E-value=58 Score=26.33 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|...+++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 4567778899988777789999999999999999995
Done!