Query 016090
Match_columns 395
No_of_seqs 211 out of 469
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016090.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016090hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 100.0 2E-38 1.4E-42 264.3 10.8 100 147-253 2-101 (101)
2 d1cf7a_ a.4.5.17 (A:) Cell cyc 100.0 1.7E-30 1.2E-34 202.3 5.8 66 69-134 1-67 (67)
3 d1cf7b_ a.4.5.17 (B:) Cell cyc 98.5 3.1E-08 2.3E-12 78.7 3.8 30 106-136 52-81 (82)
4 d1j5ya1 a.4.5.1 (A:3-67) Putat 93.7 0.03 2.2E-06 40.5 4.1 53 81-135 11-64 (65)
5 d1sfxa_ a.4.5.50 (A:) Hypothet 93.2 0.01 7.4E-07 46.6 0.8 36 91-126 32-67 (109)
6 d1biaa1 a.4.5.1 (A:1-63) Bioti 90.2 0.13 9.1E-06 37.1 3.8 42 80-123 8-49 (63)
7 d1mkma1 a.4.5.33 (A:1-75) Tran 89.0 0.19 1.4E-05 37.0 4.1 49 82-131 10-58 (75)
8 d1ku9a_ a.4.5.36 (A:) DNA-bind 87.7 0.61 4.4E-05 36.8 6.8 48 78-126 27-74 (151)
9 d2a61a1 a.4.5.28 (A:5-143) Tra 86.4 0.43 3.1E-05 37.6 5.1 46 91-136 42-90 (139)
10 d2d1ha1 a.4.5.50 (A:1-109) Hyp 85.6 0.33 2.4E-05 37.2 3.9 37 91-127 34-70 (109)
11 d1tw3a1 a.4.5.29 (A:14-98) Car 83.1 0.2 1.4E-05 37.8 1.5 48 82-132 26-73 (85)
12 d1p4xa1 a.4.5.28 (A:1-125) Sta 82.6 0.44 3.2E-05 37.6 3.5 44 83-126 40-83 (125)
13 d1qzza1 a.4.5.29 (A:10-101) Ac 80.7 0.21 1.5E-05 38.5 0.9 49 82-133 32-80 (92)
14 d3broa1 a.4.5.28 (A:3-137) Tra 79.5 0.63 4.6E-05 36.3 3.4 45 82-126 34-78 (135)
15 d1fnna1 a.4.5.11 (A:277-388) C 78.5 0.33 2.4E-05 38.6 1.4 29 97-125 42-73 (112)
16 d1bl0a1 a.4.1.8 (A:9-62) MarA 76.4 0.89 6.5E-05 30.8 3.0 44 78-121 4-47 (54)
17 d2frha1 a.4.5.28 (A:102-216) P 75.8 0.94 6.8E-05 35.1 3.4 45 83-127 39-83 (115)
18 d1lvaa3 a.4.5.35 (A:511-574) C 75.6 1.4 0.0001 31.6 4.0 55 77-131 7-61 (64)
19 d2fbha1 a.4.5.28 (A:8-144) Tra 73.7 9.9 0.00072 29.1 9.2 43 84-127 35-77 (137)
20 d1p4xa2 a.4.5.28 (A:126-250) S 73.4 0.97 7.1E-05 35.8 3.0 44 83-126 39-82 (125)
21 d1ub9a_ a.4.5.28 (A:) Hypothet 73.2 0.46 3.4E-05 35.7 0.9 43 82-126 21-63 (100)
22 d1jhfa1 a.4.5.2 (A:2-72) LexA 72.2 0.81 5.9E-05 33.4 2.0 46 82-127 13-59 (71)
23 d1d5ya1 a.4.1.8 (A:3-56) Rob t 69.1 1.3 9.5E-05 29.9 2.4 44 77-120 3-46 (54)
24 d1hsja1 a.4.5.28 (A:373-487) S 69.1 1.4 9.9E-05 34.2 2.8 46 82-127 37-82 (115)
25 d3ctaa1 a.4.5.28 (A:5-89) Ta10 64.4 2.1 0.00015 31.9 3.0 49 85-133 13-61 (85)
26 d2cyya1 a.4.5.32 (A:5-64) Puta 61.3 3.2 0.00023 28.8 3.3 46 79-126 5-50 (60)
27 d1x4pa1 a.217.1.1 (A:8-60) Arg 61.3 0.78 5.7E-05 32.5 -0.1 12 329-340 26-37 (53)
28 d2fbka1 a.4.5.28 (A:8-179) Tra 60.3 3.1 0.00023 34.0 3.6 41 87-127 73-113 (172)
29 d2hr3a1 a.4.5.28 (A:2-146) Pro 59.3 3.3 0.00024 32.4 3.5 37 91-127 47-83 (145)
30 d2gxba1 a.4.5.19 (A:140-198) Z 58.1 6.1 0.00044 28.5 4.4 54 81-134 3-57 (59)
31 d2hs5a1 a.4.5.6 (A:25-93) Puta 57.8 3.3 0.00024 29.5 2.9 41 89-129 21-61 (69)
32 d1w5sa1 a.4.5.11 (A:300-409) C 55.9 1.7 0.00012 34.7 1.0 31 99-129 42-75 (110)
33 d1r7ja_ a.4.5.49 (A:) Sso10a ( 55.1 12 0.00086 28.4 5.9 47 84-132 10-56 (90)
34 d1i1ga1 a.4.5.32 (A:2-61) LprA 54.6 4.9 0.00035 28.0 3.3 46 79-126 5-50 (60)
35 d2bv6a1 a.4.5.28 (A:5-140) Tra 53.8 2.4 0.00018 33.0 1.7 41 84-126 41-81 (136)
36 d2cfxa1 a.4.5.32 (A:1-63) Tran 53.2 5.2 0.00038 28.1 3.3 47 78-126 6-52 (63)
37 d2fbia1 a.4.5.28 (A:5-140) Pro 53.1 1.7 0.00012 33.8 0.7 36 91-126 42-77 (136)
38 d3bwga1 a.4.5.6 (A:5-82) Trans 52.4 3.5 0.00026 29.8 2.3 41 89-129 17-58 (78)
39 d1z05a1 a.4.5.63 (A:10-80) Tra 52.1 4.3 0.00031 28.7 2.7 45 80-126 9-53 (71)
40 d2etha1 a.4.5.28 (A:1-140) Put 51.3 5.4 0.00039 30.9 3.4 42 83-126 38-79 (140)
41 d2azea1 e.63.1.1 (A:199-346) T 51.1 20 0.0015 29.8 7.2 19 207-225 63-81 (148)
42 d1in4a1 a.4.5.11 (A:255-329) H 49.8 6.7 0.00049 29.5 3.6 57 75-131 3-61 (75)
43 d1s3ja_ a.4.5.28 (A:) Putative 49.7 2.6 0.00019 32.9 1.2 36 92-127 48-83 (143)
44 d1wi9a_ a.4.5.47 (A:) Hypothet 49.3 7.4 0.00054 29.1 3.7 48 77-126 7-54 (72)
45 d2iu5a1 a.4.1.9 (A:1-71) Trans 47.0 8.8 0.00064 26.8 3.7 36 76-111 9-44 (71)
46 d1umqa_ a.4.1.12 (A:) Photosyn 46.8 5.3 0.00038 28.0 2.4 41 72-114 14-54 (60)
47 d1lj9a_ a.4.5.28 (A:) Transcri 46.8 2.3 0.00017 33.6 0.5 40 86-127 38-77 (144)
48 d2cg4a1 a.4.5.32 (A:4-66) Regu 46.7 7 0.00051 27.2 3.1 48 77-126 5-52 (63)
49 d1dpua_ a.4.5.16 (A:) C-termin 44.4 10 0.00074 27.7 3.8 52 75-126 4-57 (69)
50 d1lnwa_ a.4.5.28 (A:) MexR rep 43.3 6.5 0.00047 30.6 2.7 35 93-127 50-84 (141)
51 d2g7la1 a.4.1.9 (A:16-83) Puta 43.2 10 0.00074 26.4 3.5 37 76-112 7-43 (68)
52 d1r8da_ a.6.1.3 (A:) Multidrug 41.2 22 0.0016 26.5 5.5 38 94-135 3-42 (109)
53 d3deua1 a.4.5.28 (A:2-141) Tra 41.1 33 0.0024 26.0 6.7 37 91-127 44-80 (140)
54 d1r8ea1 a.6.1.3 (A:3-120) Tran 41.0 47 0.0034 24.8 7.5 81 94-181 4-105 (118)
55 d1z91a1 a.4.5.28 (A:8-144) Org 40.4 3.1 0.00022 32.4 0.3 36 91-126 45-80 (137)
56 d2fd5a1 a.4.1.9 (A:1-76) Proba 39.9 7.3 0.00053 27.4 2.3 37 76-112 10-46 (76)
57 d1hw1a1 a.4.5.6 (A:5-78) Fatty 38.1 8.1 0.00059 27.9 2.3 54 75-128 4-62 (74)
58 d1ylfa1 a.4.5.55 (A:5-142) Hyp 38.0 12 0.00086 29.2 3.6 50 82-131 12-62 (138)
59 d1zyba1 a.4.5.4 (A:148-220) Pr 37.8 9.1 0.00067 27.4 2.6 38 94-132 28-65 (73)
60 d1t56a1 a.4.1.9 (A:22-94) Ethr 37.6 10 0.00074 26.2 2.8 35 77-111 7-41 (73)
61 d2id3a1 a.4.1.9 (A:13-80) Puta 37.0 4.2 0.00031 28.4 0.5 37 76-112 9-45 (68)
62 d2np5a1 a.4.1.9 (A:9-77) Trans 35.0 9.3 0.00068 26.2 2.2 35 77-111 5-39 (69)
63 d1ft9a1 a.4.5.4 (A:134-213) CO 34.7 10 0.00075 27.0 2.5 39 94-132 31-69 (80)
64 d1v7ba1 a.4.1.9 (A:1-74) Trans 34.5 14 0.0011 25.6 3.2 36 77-112 8-43 (74)
65 d1zdna1 d.20.1.1 (A:6-156) Ubi 33.4 28 0.002 27.8 5.2 43 167-216 6-48 (151)
66 d2fq4a1 a.4.1.9 (A:9-77) Trans 32.2 11 0.00081 26.2 2.2 37 77-113 8-44 (69)
67 d1jgsa_ a.4.5.28 (A:) Multiple 31.4 6.6 0.00048 30.5 0.9 43 82-126 39-81 (138)
68 d1fxkc_ a.2.5.1 (C:) Prefoldin 31.0 36 0.0026 26.0 5.4 53 128-180 70-129 (133)
69 d2fbqa1 a.4.1.9 (A:2-80) Trans 30.8 14 0.001 26.0 2.6 35 78-112 9-43 (79)
70 d1ui5a1 a.4.1.9 (A:5-75) A-fac 30.5 19 0.0014 24.9 3.2 37 76-112 8-44 (71)
71 d1sfua_ a.4.5.19 (A:) 34L {Yab 30.0 18 0.0013 26.7 3.1 58 75-134 8-65 (70)
72 d1nkpa_ a.38.1.1 (A:) Myc prot 29.5 50 0.0036 23.9 5.7 70 104-179 12-85 (88)
73 d1jt6a1 a.4.1.9 (A:2-72) Multi 28.6 16 0.0012 25.2 2.6 36 78-113 6-41 (71)
74 d1ulya_ a.4.5.58 (A:) Hypothet 28.3 14 0.001 29.9 2.6 43 80-125 22-64 (190)
75 d1g2ha_ a.4.1.12 (A:) Transcri 27.1 15 0.0011 25.6 2.2 35 76-114 19-54 (61)
76 d1i5za1 a.4.5.4 (A:138-206) Ca 27.0 24 0.0017 24.3 3.3 35 94-128 30-64 (69)
77 d1fxka_ a.2.5.1 (A:) Prefoldin 26.5 40 0.0029 25.3 4.8 69 111-181 32-100 (107)
78 d3c07a1 a.4.1.9 (A:15-89) Puta 26.4 14 0.0011 25.5 2.0 37 76-112 8-44 (75)
79 d2hoea1 a.4.5.63 (A:10-71) N-a 26.2 14 0.00099 25.8 1.8 44 82-128 4-47 (62)
80 d1zk8a1 a.4.1.9 (A:6-77) Trans 26.1 20 0.0014 24.8 2.7 36 76-111 6-41 (72)
81 d2gaua1 a.4.5.4 (A:152-232) Tr 25.8 28 0.002 24.3 3.5 54 78-132 6-67 (81)
82 d2fxaa1 a.4.5.28 (A:6-167) Pro 25.6 8.2 0.0006 31.4 0.5 35 93-127 55-89 (162)
83 d2g7sa1 a.4.1.9 (A:3-76) Putat 25.5 17 0.0012 25.3 2.2 34 78-111 9-42 (74)
84 d1fxkc_ a.2.5.1 (C:) Prefoldin 25.4 61 0.0044 24.6 5.8 30 150-179 92-121 (133)
85 d1fxka_ a.2.5.1 (A:) Prefoldin 24.8 1.3E+02 0.0092 22.3 8.8 37 143-179 69-105 (107)
86 d1r1ta_ a.4.5.5 (A:) SmtB repr 24.7 21 0.0016 26.6 2.8 46 82-130 28-73 (98)
87 d2o7ta1 a.4.1.9 (A:1-78) Trans 24.5 23 0.0017 24.9 2.8 37 76-112 10-46 (78)
88 d2hyja1 a.4.1.9 (A:8-82) Putat 24.5 18 0.0013 25.3 2.2 35 77-111 9-43 (75)
89 d2ozua1 d.108.1.1 (A:507-776) 23.8 35 0.0025 30.8 4.5 52 72-126 177-234 (270)
90 d1ixsb1 a.4.5.11 (B:243-318) H 23.7 16 0.0012 27.3 1.9 57 76-132 4-62 (76)
91 d2isya1 a.4.5.24 (A:2-64) Iron 23.2 42 0.0031 23.4 4.0 40 90-129 20-59 (63)
92 d1pb6a1 a.4.1.9 (A:14-85) Hypo 22.4 25 0.0018 24.3 2.6 36 77-112 8-43 (72)
93 d1vi0a1 a.4.1.9 (A:6-77) Hypot 22.0 22 0.0016 24.4 2.2 34 78-111 6-39 (72)
94 d1sgma1 a.4.1.9 (A:5-77) Putat 21.6 32 0.0023 23.6 3.1 34 78-111 7-40 (73)
95 d1tbga_ b.69.4.1 (A:) beta1-su 21.4 98 0.0071 24.0 6.5 20 155-174 4-23 (340)
96 d1v4ra1 a.4.5.6 (A:1-100) Tran 21.4 18 0.0013 27.1 1.7 54 76-129 12-69 (100)
97 d2p4wa1 a.4.5.64 (A:1-194) Tra 21.1 29 0.0021 28.3 3.2 44 80-126 18-61 (194)
98 d1rkta1 a.4.1.9 (A:2-82) Hypot 21.0 27 0.002 24.5 2.6 34 78-111 16-49 (81)
99 d1mzba_ a.4.5.42 (A:) Ferric u 20.1 37 0.0027 26.1 3.4 47 81-127 20-71 (134)
100 d2d6ya1 a.4.1.9 (A:7-74) Putat 20.1 30 0.0022 23.7 2.6 36 77-112 6-41 (68)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2e-38 Score=264.32 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCCeEEecCCCcc
Q 016090 147 DASILQADIDNLSMEELRVDEQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGTTLEVPDPDEA 226 (395)
Q Consensus 147 ~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP~e~ 226 (395)
+++.|++|+++|.++|+.||++|++|+++|++|++|++|.+|+|||++||++|+||+++||||||||+||+||||+|++
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~gT~LeVPdp~~- 80 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE- 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCCCEEeecCCCc-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCCCceEEEEecCCCceEEEEecCc
Q 016090 227 VDYPQRRYRIILRSTMGPIDVYLVSRF 253 (395)
Q Consensus 227 ~~~~~~~YqI~LkS~~GPIdVyL~~~~ 253 (395)
+|||||||++||||||||++.
T Consensus 81 ------~yqi~lkS~~GpI~V~Lc~~e 101 (101)
T d2azeb1 81 ------NFQISLKSKQGPIDVFLCPEE 101 (101)
T ss_dssp ------CEEEEEECSSSCCEEECCTTC
T ss_pred ------cEEEEEecCCCCEEEEEeCCC
Confidence 699999999999999999863
No 2
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.96 E-value=1.7e-30 Score=202.34 Aligned_cols=66 Identities=71% Similarity=1.082 Sum_probs=64.8
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhcc-ceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 69 CRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 69 ~R~d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
+|+|+|||+||+|||.|++++|++++||++||++|+| +|||||||||||||||||+|++||+|+|+
T Consensus 1 sR~ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~Kn~~~W~ 67 (67)
T d1cf7a_ 1 SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK 67 (67)
T ss_dssp CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHhcCcchhhHHHHHHHHhhhhhhhcccCCccccC
Confidence 5999999999999999999999999999999999999 89999999999999999999999999996
No 3
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.49 E-value=3.1e-08 Score=78.69 Aligned_cols=30 Identities=47% Similarity=0.905 Sum_probs=27.5
Q ss_pred ceeehhhhHHHhhhcccchhccCCeEEEecc
Q 016090 106 QKRRIYDITNVLEGIGLIEKKLKNRIRWKGL 136 (395)
Q Consensus 106 qKRRIYDItNVLEgIGLIeK~sKN~i~W~G~ 136 (395)
.|||+||.+|||-++|+|+|. |-.|+|+|+
T Consensus 52 IRRRVYDALNVLmA~~II~K~-kK~I~W~Gl 81 (82)
T d1cf7b_ 52 IRRRVYDALNVLMAMNIISKE-KKEIKWIGL 81 (82)
T ss_dssp HHHHHHHHHHHHHHTTSBCCC-SSCEEBCCC
T ss_pred hhHHHHHHHHHHHHHhhhhhc-CceeEeecC
Confidence 699999999999999999998 556999996
No 4
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.66 E-value=0.03 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhccc-chhccCCeEEEec
Q 016090 81 KFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGL-IEKKLKNRIRWKG 135 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~sKN~i~W~G 135 (395)
+.+.+|.++ .+.+...++|+.|+|++|-||-=++-|+..|+ |....+ -|++.|
T Consensus 11 ~Il~~L~~~-~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~g-GY~L~~ 64 (65)
T d1j5ya1 11 SIVRILERS-KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPR-GYVLAG 64 (65)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETT-EEECCT
T ss_pred HHHHHHHHc-CCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEEeCC-CEEeCC
Confidence 355666554 57899999999999999999999999999997 666543 666554
No 5
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=93.20 E-value=0.01 Score=46.63 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.|.+...++|+.+++.|..+|++++-||.-|||+|.
T Consensus 32 ~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEE
Confidence 467889999999999999999999999999999876
No 6
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.17 E-value=0.13 Score=37.14 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLI 123 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLI 123 (395)
.+.+.+|++ +..+...++|+.|+|++|-||-=++.|+..|++
T Consensus 8 ~~iL~~L~~--~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~ 49 (63)
T d1biaa1 8 LKLIALLAN--GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (63)
T ss_dssp HHHHHHHTT--SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH--CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCc
Confidence 467777754 678999999999999999999999999999983
No 7
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=88.96 E-value=0.19 Score=37.00 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.++++..+ +..+.+.++|+.+++.|=.+|-+++.|+..|+++|.....|
T Consensus 10 IL~~~a~~-~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y 58 (75)
T d1mkma1 10 ILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRY 58 (75)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCE
Confidence 44555554 46799999999999999999999999999999999865544
No 8
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=87.68 E-value=0.61 Score=36.79 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..-+.+.++-.++ +.+.+.++|+.+++.|=.+|=+++.|+..|||.+.
T Consensus 27 ~~~~i~~~L~~~~-~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 27 SVGAVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC-CCcCHHHHHHHhCCCcchHHHHHHHHHHCCCEEEE
Confidence 3445565655544 45999999999999999999999999999999877
No 9
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=86.42 E-value=0.43 Score=37.65 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=38.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC---CeEEEecc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK---NRIRWKGL 136 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK---N~i~W~G~ 136 (395)
.+.+...++|+.|++.|--|.-++|-|+..|+|+|... .+..+...
T Consensus 42 ~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~L 90 (139)
T d2a61a1 42 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVI 90 (139)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEE
T ss_pred cCCCCHHHHHHHhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEE
Confidence 44679999999999999999999999999999998843 34555543
No 10
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=85.62 E-value=0.33 Score=37.21 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+|.+...++|+.+++.+-.+.-+++-|+.-|||+|..
T Consensus 34 ~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEee
Confidence 5578999999999999999999999999999999763
No 11
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=83.09 E-value=0.2 Score=37.81 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
..+.+ .+|.+++.++|+++++...+++-|..+|.++|++++...+.|.
T Consensus 26 ifd~l---~~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~~~~y~ 73 (85)
T d1tw3a1 26 LVDHI---LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFV 73 (85)
T ss_dssp HHHHH---HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred cHHHh---ccCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecCCCeEe
Confidence 44455 3678999999999999999999999999999999988776654
No 12
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=82.64 E-value=0.44 Score=37.65 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=39.9
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.++...+++.+.+.++|+.+++.|-.+--+++.||.-|+|+|.
T Consensus 40 L~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~ 83 (125)
T d1p4xa1 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (125)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhccCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCceee
Confidence 44456678889999999999999999999999999999999988
No 13
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=80.71 E-value=0.21 Score=38.48 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
..+.+. +|...+.++|+++++..|+++-+...|.++||++|...+.+..
T Consensus 32 ifd~L~---~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~~~ 80 (92)
T d1qzza1 32 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPL 80 (92)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCC
T ss_pred chHHHh---CCCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecCCCcee
Confidence 445553 5789999999999999999999999999999999987665443
No 14
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=79.54 E-value=0.63 Score=36.27 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.++...+++.+.++++|+.+++.|-.+.-+++-||.-|+|+|.
T Consensus 34 vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~ 78 (135)
T d3broa1 34 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 78 (135)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHHCcCHhHHHHHHHHHHHHHHHHHH
Confidence 445566778899999999999999999999999999999999987
No 15
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=78.53 E-value=0.33 Score=38.57 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHhcc---ceeehhhhHHHhhhcccchh
Q 016090 97 NKAAETLEV---QKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 97 n~aA~~L~V---qKRRIYDItNVLEgIGLIeK 125 (395)
..+|+..++ ..|||||++|-||.+|+|+.
T Consensus 42 ~~lc~~~~~~pls~rr~~~~l~~Le~lGiI~~ 73 (112)
T d1fnna1 42 KIVCEEYGERPRVHSQLWSYLNDLREKGIVET 73 (112)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHhCCCeee
Confidence 556777776 78999999999999999984
No 16
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=76.37 E-value=0.89 Score=30.78 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIG 121 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIG 121 (395)
...+.++++.+.....++|.++|+.+|+.+|.++.+..-.=|+.
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 35688999999999999999999999999999998876655544
No 17
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=75.81 E-value=0.94 Score=35.14 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+..+...+++.+.+.++|+.|+++|=-+--+++.||.-|||+|..
T Consensus 39 L~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~ 83 (115)
T d2frha1 39 LTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 83 (115)
T ss_dssp HHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred HHHHHcCCCCCCCHHHHHHHHCCCHhHHHHHHHHHHhhhhheeee
Confidence 344677888999999999999999999999999999999999984
No 18
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=75.61 E-value=1.4 Score=31.59 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeE
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRI 131 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i 131 (395)
.|.++...++.++.-..-.+.++|+.|++.-..+=++.+.|-..|.+-|..++.|
T Consensus 7 ~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~~d~y 61 (64)
T d1lvaa3 7 KLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFY 61 (64)
T ss_dssp HHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBE
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeccccc
Confidence 4677888899999889999999999999999999999999999999999998876
No 19
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=73.72 E-value=9.9 Score=29.05 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=36.8
Q ss_pred HHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 84 NLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 84 ~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+...+++ +..+++|+.|++.|-.+--+++-|+.-|+|+|..
T Consensus 35 ~~l~~~~~~-~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~ 77 (137)
T d2fbha1 35 LHLARHRDS-PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 77 (137)
T ss_dssp HHHHHCSSC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHcCCC-CcHHHHHHHHCCCHHHHHHHHHHHHHcCCccccC
Confidence 344455554 6899999999999999999999999999999884
No 20
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=73.44 E-value=0.97 Score=35.84 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.++...+++.+.+.++|+.|++.|-.+--+++-||.-|+|+|.
T Consensus 39 L~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~ 82 (125)
T d1p4xa2 39 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 82 (125)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHccCCCccHHHHHHHHCCCcchHHHHHHHHHhccCEeee
Confidence 34455677778999999999999999999999999999999987
No 21
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=73.21 E-value=0.46 Score=35.72 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+|.. .+.+.+.++|+.|++.+-.++-+++.||..|+|++.
T Consensus 21 IL~~L~~--~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~ 63 (100)
T d1ub9a_ 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcc--CCCeeHHHHHHHHhhccccccHHHHHHhhhceeEEE
Confidence 4455533 356899999999999999999999999999999976
No 22
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=72.22 E-value=0.81 Score=33.42 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCcccHHHHHHHhcc-ceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEV-QKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~s 127 (395)
||.-+-...+....+.++|+.||+ ++-.++..++.||.-|+|+|..
T Consensus 13 ~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 13 LIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCC
Confidence 444333445678899999999999 7889999999999999999973
No 23
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.11 E-value=1.3 Score=29.95 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhc
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGI 120 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 120 (395)
.+.++.++++.+.-...++|+++|+.++++++.|.-+.--.-|+
T Consensus 3 ~ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~~~g~ 46 (54)
T d1d5ya1 3 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGH 46 (54)
T ss_dssp HHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 36678999999999999999999999999999988766444333
No 24
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=69.09 E-value=1.4 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
++.++-..+++.+.+.++|+.|++.+=.+--+++-||.-|||+|..
T Consensus 37 vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~ 82 (115)
T d1hsja1 37 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 82 (115)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHccCCCCcCHHHHHHHHCCChhhHHHHHHHHHHcCCeEEEe
Confidence 3555666778889999999999999999999999999999999883
No 25
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=64.35 E-value=2.1 Score=31.88 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=40.2
Q ss_pred HHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEE
Q 016090 85 LIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRW 133 (395)
Q Consensus 85 Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W 133 (395)
+-..+..+.+...++|+.|++.+=.+-.+++-||.-|||+|..-.+..+
T Consensus 13 ~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~ 61 (85)
T d3ctaa1 13 AAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQI 61 (85)
T ss_dssp HTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred hhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeccccccc
Confidence 3344566789999999999999999999999999999999864433333
No 26
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=61.30 E-value=3.2 Score=28.79 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 79 TKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 79 TkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
=++.+.+|+. ++.+...++|++|+++..-++.=++=|+.-|+|.+.
T Consensus 5 D~~Il~~L~~--n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 5 DKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 3578888877 477899999999999999999999999999999865
No 27
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.26 E-value=0.78 Score=32.46 Aligned_cols=12 Identities=50% Similarity=1.185 Sum_probs=10.0
Q ss_pred CCCCeeeecCCC
Q 016090 329 NDADYWLLSDAD 340 (395)
Q Consensus 329 ~d~DYwl~sd~~ 340 (395)
.+.+|||+||.+
T Consensus 26 ~~P~yWFLsde~ 37 (53)
T d1x4pa1 26 EDPAYWFLSDEN 37 (53)
T ss_dssp HSGGGCTTTCCS
T ss_pred cCCCeEEeeccc
Confidence 467999999965
No 28
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=60.32 E-value=3.1 Score=33.98 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=37.1
Q ss_pred hhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 87 KHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 87 ~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
...+++.+...++|+.|++.|-.+--+++-||.-|||+|..
T Consensus 73 ~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~ 113 (172)
T d2fbka1 73 RSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 113 (172)
T ss_dssp HHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred hhCCCCCcCHHHHHHHHCcCHhHHHHHHHHHHhCCCeeeec
Confidence 34566678999999999999999999999999999999984
No 29
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=59.32 E-value=3.3 Score=32.40 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+|.+.+.++|+.+++.+=.+--+++.|+.-|||+|..
T Consensus 47 ~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~ 83 (145)
T d2hr3a1 47 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHA 83 (145)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeee
Confidence 4679999999999999999999999999999999873
No 30
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.13 E-value=6.1 Score=28.53 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=42.7
Q ss_pred HHHHHHhh-CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 81 KFINLIKH-AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 81 KFi~Ll~~-ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
+.+.++.. .+...+.-..+|.+|+|.||.|--+.=-|+--|.+.|....-=.|+
T Consensus 3 ~vl~~l~~lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~gtPPlWr 57 (59)
T d2gxba1 3 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 57 (59)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred HHHHHHHhcCCccchhHHHHHHHhCCcHHHHHHHHHHHHHccchhhcCCCCCCcc
Confidence 34455554 6677899999999999999998888888888888888876655564
No 31
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=57.79 E-value=3.3 Score=29.47 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 89 AEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 89 ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.++..+...++|+.|+|.+--+-+..+.|+.-|+|+...+.
T Consensus 21 ~~G~~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~ 61 (69)
T d2hs5a1 21 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 61 (69)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCccCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 36777899999999999999999999999999999987554
No 32
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152, C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=55.89 E-value=1.7 Score=34.71 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHhcc---ceeehhhhHHHhhhcccchhccCC
Q 016090 99 AAETLEV---QKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 99 aA~~L~V---qKRRIYDItNVLEgIGLIeK~sKN 129 (395)
+|+..++ .-|||||++|-||-+|+|+.+.++
T Consensus 42 ~c~~~~~~P~~~t~~~~~l~~Le~lGiI~~r~~~ 75 (110)
T d1w5sa1 42 SLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSG 75 (110)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHcCCeEEEecc
Confidence 3566777 668999999999999999866444
No 33
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=55.13 E-value=12 Score=28.43 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=34.9
Q ss_pred HHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 84 NLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 84 ~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
++|....+| .....+....++.=+|+-.+++-|+..|||++. ++.|.
T Consensus 10 DIL~~~~~g-~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~~-~~~Y~ 56 (90)
T d1r7ja_ 10 AILEACKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE-GKQYM 56 (90)
T ss_dssp HHHHHHTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred HHHHHHhCC-CCccHHHHHcCCCHHHHHHHHHHHHHCCCeeec-CCEEE
Confidence 344333344 356888888899999999999999999999875 34443
No 34
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=54.62 E-value=4.9 Score=27.96 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 79 TKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 79 TkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
=+|.+.+|++ ++.+...++|+++|+..--+++=++-|+.-|+|.+.
T Consensus 5 D~kIl~~L~~--n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 5 DKIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp HHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 4678888876 578899999999999999999999999999999764
No 35
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=53.81 E-value=2.4 Score=32.98 Aligned_cols=41 Identities=12% Similarity=0.316 Sum_probs=35.4
Q ss_pred HHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 84 NLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 84 ~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
..+... +.+...++|+.|++.|=.+.-+++-|+.-|||+|.
T Consensus 41 ~~i~~~--~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~ 81 (136)
T d2bv6a1 41 TILWDE--SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 81 (136)
T ss_dssp HHHHHS--SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHcC--CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEEe
Confidence 334443 45789999999999999999999999999999987
No 36
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=53.24 E-value=5.2 Score=28.08 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+=++.+.+|++ ++.+.+.++|+.||+.+.-++.=++=|+.-|+|.+.
T Consensus 6 ~D~~IL~~L~~--n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~~ 52 (63)
T d2cfxa1 6 IDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (63)
T ss_dssp HHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeE
Confidence 44678888876 578899999999999999999999999999999754
No 37
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.14 E-value=1.7 Score=33.84 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+...++|+.+++.|-.+..+++-|+.-|||+|.
T Consensus 42 ~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~ 77 (136)
T d2fbia1 42 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 77 (136)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 456899999999999999999999999999999987
No 38
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=52.43 E-value=3.5 Score=29.84 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 89 AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 89 ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.++..+ ...++|+.|+|+|--+-...+.|+.-|+|++....
T Consensus 17 ~~G~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 58 (78)
T d3bwga1 17 QQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS 58 (78)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCc
Confidence 356677 89999999999999999999999999999988544
No 39
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=52.08 E-value=4.3 Score=28.71 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.++.. .+.+.-.++|+.+++++.-+..|++-|+.-|+|+..
T Consensus 9 ~~Il~~l~~--~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 9 GRVYKLIDQ--KGPISRIDLSKESELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 356677765 456999999999999999999999999999999754
No 40
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=51.35 E-value=5.4 Score=30.87 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=35.7
Q ss_pred HHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 83 INLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 83 i~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
+.++... +.+...++|+.|++.|=-+--+++.|+.-|+|+|.
T Consensus 38 L~~l~~~--~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~ 79 (140)
T d2etha1 38 FLYVALF--GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 79 (140)
T ss_dssp HHHHHHH--CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeee
Confidence 3344443 44789999999999999999999999999999987
No 41
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.13 E-value=20 Score=29.81 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=17.2
Q ss_pred EEEeeCCCCCeEEecCCCc
Q 016090 207 LIAIKAPQGTTLEVPDPDE 225 (395)
Q Consensus 207 vIAIKAP~gT~LEVPdP~e 225 (395)
+|+|++-+.|+|+|-..++
T Consensus 63 FIiV~T~~~t~IdceISeD 81 (148)
T d2azea1 63 FIIVNTSKKTVIDCSISND 81 (148)
T ss_dssp CEEEEEESSCCEEEEECTT
T ss_pred EEEEecCCCCEEEEEEccc
Confidence 7999999999999998765
No 42
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=49.80 E-value=6.7 Score=29.46 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHH-hhCCCCcccHHHHHHHhccceeehhhhHH-HhhhcccchhccCCeE
Q 016090 75 LGLLTKKFINLI-KHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLKNRI 131 (395)
Q Consensus 75 LglLTkKFi~Ll-~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sKN~i 131 (395)
|-.+=+++++.+ +.-.+|.+-|+.+|..|+-.+.-|=|++- -|--.|+|+|+.+.++
T Consensus 3 Ld~~Dr~yL~~l~~~f~ggPvGl~tlAa~l~e~~~TiEdviEPyLiq~G~i~RTpRGR~ 61 (75)
T d1in4a1 3 LDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRI 61 (75)
T ss_dssp CCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCCcHHHHHHHHcCChhHHHHHhhHHHHHhhHHhhCCchHH
Confidence 345667888754 66789999999999999999999988875 5778999999988765
No 43
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=49.68 E-value=2.6 Score=32.93 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 92 GILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 92 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.++++|+.+++.|-.+..++|-||.-|||+|..
T Consensus 48 ~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~ 83 (143)
T d1s3ja_ 48 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 83 (143)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHhhhheeee
Confidence 457999999999999999999999999999999773
No 44
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.33 E-value=7.4 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.|-..||++++. ..++-|+++|..+++..--.-+=++-||..|.|.=.
T Consensus 7 ~lL~~FI~~Ik~--~Kvv~LedLAa~F~lktqd~i~RIq~Le~~g~ltGV 54 (72)
T d1wi9a_ 7 GFLTEFINYIKK--SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGV 54 (72)
T ss_dssp CHHHHHHHHHHH--CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHHH--CCEeeHHHHHHHcCCcHHHHHHHHHHHHHCCCeeeE
Confidence 366799999988 468999999999999666666667888888877654
No 45
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=46.98 E-value=8.8 Score=26.80 Aligned_cols=36 Identities=14% Similarity=0.399 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
..|..-+.+++.+.+-..+.+.++|++.||.|.-||
T Consensus 9 ~~I~~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y 44 (71)
T d2iu5a1 9 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 44 (71)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCccccHHH
Confidence 356677889999988889999999999999999998
No 46
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=46.79 E-value=5.3 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhH
Q 016090 72 DSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDIT 114 (395)
Q Consensus 72 d~SLglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDIt 114 (395)
..+|..+-+.+|.-.-...+|. ..+||+.|||+|+-||.-+
T Consensus 14 ~~~l~~~Er~~I~~aL~~~~gn--~~~aA~~LGIsR~TL~rkm 54 (60)
T d1umqa_ 14 PMSADRVRWEHIQRIYEMCDRN--VSETARRLNMHRRTLQRIL 54 (60)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSC--HHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCc--HHHHHHHHCCCHHHHHHHH
Confidence 3478888888887655545554 5799999999999999643
No 47
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=46.79 E-value=2.3 Score=33.60 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.0
Q ss_pred HhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 86 IKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 86 l~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
+.+.+ .+...++|+.|++.|--+--+++-|+.-|||+|..
T Consensus 38 i~~~~--~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~ 77 (144)
T d1lj9a_ 38 VCENP--GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCC--CCCHHHHHHHHCccHhhHHHHHHHHHhhhcccccC
Confidence 44443 47999999999999999999999999999999874
No 48
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=46.66 E-value=7 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+=++.+.+|++ ++.+...++|++||++..-++.=++=|+.-|+|.+.
T Consensus 5 ~~D~~IL~~L~~--~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 5 NLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeE
Confidence 345678888876 477899999999999999999999999999999854
No 49
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.45 E-value=10 Score=27.65 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhCCCCc-ccHHHHHHHh-ccceeehhhhHHHhhhcccchhc
Q 016090 75 LGLLTKKFINLIKHAEDGI-LDLNKAAETL-EVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~-ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
|.-+-++.+++++..+... +.+.+++.+| ++..+-|..++.-|..-|+|=-+
T Consensus 4 Ls~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsT 57 (69)
T d1dpua_ 4 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYST 57 (69)
T ss_dssp SCHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHhCCCccCcCHHHHHHHccCCCHHHHHHHHHHHHhCCceecc
Confidence 4456678888888776543 8999999999 79999999999999999998643
No 50
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.30 E-value=6.5 Score=30.63 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=32.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+..+++|+.|++.|=.+-=++|.|+.-|+|+|..
T Consensus 50 ~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~~ 84 (141)
T d1lnwa_ 50 GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 84 (141)
T ss_dssp TCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCccHhHHHHHHHHHHHhhceeeec
Confidence 37999999999999999999999999999999873
No 51
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=43.24 E-value=10 Score=26.36 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++.+..-.-+.+.++|+++||.|.-||=
T Consensus 7 ~~Il~aa~~l~~~~g~~~~si~~ia~~~gvs~~~~y~ 43 (68)
T d2g7la1 7 RWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 43 (68)
T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHhHhhH
Confidence 4577788899988888899999999999999999883
No 52
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=41.21 E-value=22 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.4
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccch--hccCCeEEEec
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIE--KKLKNRIRWKG 135 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~sKN~i~W~G 135 (395)
+.+.++|+.+||..+-|- -.|.+|||. +...|.|++-.
T Consensus 3 ytI~e~A~~~gvs~~tlR----~Ye~~GLl~p~~r~~~gyR~Y~ 42 (109)
T d1r8da_ 3 YQVKQVAEISGVSIRTLH----HYDNIELLNPSALTDAGYRLYS 42 (109)
T ss_dssp BCHHHHHHHHSCCHHHHH----HHHHTTSSCCSEECTTCCEEBC
T ss_pred ccHHHHHHHHCcCHHHHH----HHHHcCCcCCcccCCccccccc
Confidence 567899999999887442 346778886 45668787753
No 53
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=41.06 E-value=33 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
++.+...++|+.+++.|-.+--+++-|+.-|||++..
T Consensus 44 ~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~ 80 (140)
T d3deua1 44 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 80 (140)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCccHHHHHHHHCCCHhHHHHHHHHHHhCCCEEecc
Confidence 4568899999999999999999999999999999774
No 54
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=41.00 E-value=47 Score=24.84 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccc--hh-ccCCeEEEeccCCCCCCCchHHHHHHHH-----------------
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLI--EK-KLKNRIRWKGLDNSIPGEVDADASILQA----------------- 153 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLI--eK-~sKN~i~W~G~~~s~~~~~~~~~~~Lq~----------------- 153 (395)
+.+.++|+.+||+.|-| =-.|-+||| .+ ...|.|++-..... ..-..+..|++
T Consensus 4 ytI~evA~~~gvs~~tl----R~Ye~~GLl~P~~~r~~~gyR~Y~~~~l---~~l~~I~~lr~~g~sl~eIk~~l~~~~~ 76 (118)
T d1r8ea1 4 YSIGEVSKLANVSIKAL----RYYDKIDLFKPAYVDPDTSYRYYTDSQL---IHLDLIKSLKYIGTPLEEMKKAQDLEME 76 (118)
T ss_dssp EEHHHHHHHHTCCHHHH----HHHHHTTSSCCSEECTTTCCEEEETGGG---GHHHHHHHHHHTTCCHHHHHHHTTSCHH
T ss_pred ccHHHHHHHHCcCHHHH----HHHHHcCCcccccccCCCCcccccHHHH---HHHHHHHHHHHcCCCHHHHHHHHccCHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 154 -DIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 154 -El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
-...|..+.+.+++.|..+++..+.+..
T Consensus 77 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 105 (118)
T d1r8ea1 77 ELFAFYTEQERQIREKLDFLSALEQTISL 105 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 55
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=40.44 E-value=3.1 Score=32.40 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 91 DGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 91 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+.++|+.+++.|-.+--+++.||.-|+|+|.
T Consensus 45 ~~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~ 80 (137)
T d1z91a1 45 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 80 (137)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHhhccceEEe
Confidence 456899999999999999999999999999999977
No 56
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.91 E-value=7.3 Score=27.36 Aligned_cols=37 Identities=3% Similarity=-0.054 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++....-.-+.++++|+..||.|.-||-
T Consensus 10 ~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~ 46 (76)
T d2fd5a1 10 ARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYA 46 (76)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGG
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHhCCCccchhh
Confidence 4577778899988878889999999999999999984
No 57
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.13 E-value=8.1 Score=27.89 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=41.7
Q ss_pred HHHHHH-HHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 75 LGLLTK-KFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 75 LglLTk-KFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
...+.. .+.+.+.. .++..| ...++|+.|+|.|=-+-..++.|+.-|+|.+..+
T Consensus 4 ~~~~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g 62 (74)
T d1hw1a1 4 PAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG 62 (74)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEeC
Confidence 344443 44445543 356677 8999999999999999999999999999998754
No 58
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=38.01 E-value=12 Score=29.23 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc-cCCeE
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK-LKNRI 131 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-sKN~i 131 (395)
-+-+|-..++..+...++|+.+++.+..++-|+.-|..-|||+-. +++-|
T Consensus 12 ~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~ 62 (138)
T d1ylfa1 12 ILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGA 62 (138)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCE
T ss_pred HHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecCCCCc
Confidence 344555567788999999999999999999999999999999744 44445
No 59
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=37.76 E-value=9.1 Score=27.41 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.1
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
+.-.++|+.||+.+..+.-+++-|+.-|+|+.. .+.|.
T Consensus 28 lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~-~~~i~ 65 (73)
T d1zyba1 28 VKMDDLARCLDDTRLNISKTLNELQDNGLIELH-RKEIL 65 (73)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE-TTEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 577999999999999999999999999999854 55554
No 60
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=37.57 E-value=10 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
.|....++++....-.-+.+.++|+++||.|.-||
T Consensus 7 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 41 (73)
T d1t56a1 7 AILATAENLLEDRPLADISVDDLAKGAGISRPTFY 41 (73)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 35667888898887788999999999999999998
No 61
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=37.00 E-value=4.2 Score=28.37 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|....++++.+..-.-+.+.++|+.+||++.-||-
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~ 45 (68)
T d2id3a1 9 EAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 45 (68)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHH
Confidence 4566778889988777889999999999999999994
No 62
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=35.00 E-value=9.3 Score=26.24 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
.|....++++....-.-+.+..+|+..||.|.-||
T Consensus 5 ~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy 39 (69)
T d2np5a1 5 RLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQ 39 (69)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHH
Confidence 46677889998888888999999999999999988
No 63
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=34.74 E-value=10 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=35.1
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
+.-.++|..+|++|..+.=+++-|+--|+|+...++.|.
T Consensus 31 ~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~~~i~ 69 (80)
T d1ft9a1 31 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYT 69 (80)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCeEE
Confidence 445799999999999999999999999999998877665
No 64
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.48 E-value=14 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|....++++.+..-.-+.+..+|+..||.|+-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 43 (74)
T d1v7ba1 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (74)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCHHHHHHHhCcCcchHhh
Confidence 356678888888888899999999999999999994
No 65
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}
Probab=33.40 E-value=28 Score=27.84 Aligned_cols=43 Identities=26% Similarity=0.446 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhccccccccccHHHHhhccCCCCceEEEeeCCCCC
Q 016090 167 EQTRELRERLRELIENENNRKWLFVTEEDIKNLHCFQNQTLIAIKAPQGT 216 (395)
Q Consensus 167 ~~I~~~~q~L~~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT 216 (395)
+.|+.++++|++|..+....=+++...+||... -+.|+.|+||
T Consensus 6 ~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w-------~~~i~gp~~t 48 (151)
T d1zdna1 6 HIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDL-------QVTIEGPEGT 48 (151)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEE-------EEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEcCcchhee-------EEEEecCCCc
Confidence 457777888888877654433444555666543 4678899998
No 66
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=32.15 E-value=11 Score=26.21 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
.|..-.++++.+..-.-+.+..+|++.||.|.-||--
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~ 44 (69)
T d2fq4a1 8 AILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 44 (69)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 4556678888887788899999999999999999953
No 67
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=31.41 E-value=6.6 Score=30.47 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
++.++...+ .+.+.++|+.+++.+=.+-.+++-||.-|+|+|.
T Consensus 39 vL~~l~~~~--~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~ 81 (138)
T d1jgsa_ 39 VLCSIRCAA--CITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhHHhCc--CCCHHHHHHHHCCCHhHHHHHHHHHhhCCCEEEe
Confidence 344444433 4789999999999999999999999999999987
No 68
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.97 E-value=36 Score=26.05 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCeEEEeccCCCCCCC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016090 128 KNRIRWKGLDNSIPGE-------VDADASILQADIDNLSMEELRVDEQTRELRERLRELI 180 (395)
Q Consensus 128 KN~i~W~G~~~s~~~~-------~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lt 180 (395)
+.-+.|.|.+..-... +..++..|+..++.|..+-..+.+.|..+.+.++.+.
T Consensus 70 ~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777765321111 2234455555566666666666666666666665543
No 69
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.79 E-value=14 Score=25.96 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
|-.-++.++....-..+.+.++|+..||.|.-||-
T Consensus 9 Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~ 43 (79)
T d2fbqa1 9 ILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNY 43 (79)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHCcChhHHHH
Confidence 55567788877777889999999999999999984
No 70
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=30.45 E-value=19 Score=24.95 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..+..-.++++....-.-+.+..+|+..||.+.-||-
T Consensus 8 ~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~~y~ 44 (71)
T d1ui5a1 8 ATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYF 44 (71)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHH
Confidence 4566677888888888889999999999999999984
No 71
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=30.04 E-value=18 Score=26.69 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEEEe
Q 016090 75 LGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 134 (395)
Q Consensus 75 LglLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~W~ 134 (395)
.-.|.++++..|. +++-+.-..+|..||++||.|=-..==|+--|.+.|...+-=.|-
T Consensus 8 i~~lvk~~l~~L~--~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~~tPP~W~ 65 (70)
T d1sfua_ 8 IFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 65 (70)
T ss_dssp HHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHhCCCHHHHHHHHHHHHHCCCeecCCCcCCccc
Confidence 3456778877664 466778889999999999766555555777788888877666664
No 72
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.52 E-value=50 Score=23.87 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=34.6
Q ss_pred ccceeehhhhHHHhhhcc-cchhccCCeEEEeccCCCCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 104 EVQKRRIYDITNVLEGIG-LIEKKLKNRIRWKGLDNSIP---GEVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 104 ~VqKRRIYDItNVLEgIG-LIeK~sKN~i~W~G~~~s~~---~~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
.+.|||-..|-.-++.+. +|--...+ ...+.. ....+.+..|++++..|..+...|......+.++|..|
T Consensus 12 ~~Er~RR~~in~~f~~Lr~llP~~~~~------~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 12 VLERQRRNELKRSFFALRDQIPELENN------EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTC------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC------CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777666665 33211000 000100 01123355666666666666556665555556655554
No 73
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=28.60 E-value=16 Score=25.15 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehhhh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDI 113 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDI 113 (395)
|..-.++++....-.-+.+.++|+..||.|.-||--
T Consensus 6 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~ 41 (71)
T d1jt6a1 6 ILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYH 41 (71)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHHH
Confidence 456678888887777899999999999999999953
No 74
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.31 E-value=14 Score=29.88 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchh
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEK 125 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 125 (395)
.+.+.+|. .+.+...++|+.||+.+=.+|--++.|+.-|||+-
T Consensus 22 ~~Il~~L~---~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~ 64 (190)
T d1ulya_ 22 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV 64 (190)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 45677774 46789999999999999999999999999999963
No 75
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=27.13 E-value=15 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHH-HhhCCCCcccHHHHHHHhccceeehhhhH
Q 016090 76 GLLTKKFINL-IKHAEDGILDLNKAAETLEVQKRRIYDIT 114 (395)
Q Consensus 76 glLTkKFi~L-l~~ap~g~ldLn~aA~~L~VqKRRIYDIt 114 (395)
...=+.+|.- |+.. | +..+||+.||+.|+-||.=+
T Consensus 19 ~~~Er~~I~~aL~~~--g--n~~~aA~~Lgisr~tL~rKl 54 (61)
T d1g2ha_ 19 GFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp SHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--C--CHHHHHHHHCCCHHHHHHHH
Confidence 3444566664 4443 4 46799999999999999643
No 76
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.05 E-value=24 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred ccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 94 LDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 94 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
+.-.++|..+|+.|-.+--+.+-|+.-|+|+...+
T Consensus 30 lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~~ 64 (69)
T d1i5za1 30 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 64 (69)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCC
Confidence 66699999999999999999999999999987644
No 77
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.47 E-value=40 Score=25.35 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=39.5
Q ss_pred hhhHHHhhhcccchhccCCeEEEeccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016090 111 YDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEVDADASILQADIDNLSMEELRVDEQTRELRERLRELIE 181 (395)
Q Consensus 111 YDItNVLEgIGLIeK~sKN~i~W~G~~~s~~~~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~Lte 181 (395)
=+.-.||+.|..+.. ....|+=.|.-... ....+-...|++.++.|..+-..|+.++..+..++..+..
T Consensus 32 ~E~~~vl~eL~~l~~-d~~vyk~vG~vLv~-~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 32 NETQKALEELSRAAD-DAEVYKSSGNILIR-VAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHSCT-TCCEEEEETTEEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHhcchhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777665552 24456666632221 1233445566666666666666666666666666666543
No 78
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.43 E-value=14 Score=25.45 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|..-.++++.+..-.-+.+..+|+..||.|.-||-
T Consensus 8 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~ 44 (75)
T d3c07a1 8 ALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYY 44 (75)
T ss_dssp HHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHH
Confidence 4456667888888878889999999999999999984
No 79
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=26.24 E-value=14 Score=25.75 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccC
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLK 128 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sK 128 (395)
.++++... .+.-.++|+.+++.+=-+.-+++-|+.-|||....+
T Consensus 4 Il~~i~~~---pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~~~ 47 (62)
T d2hoea1 4 ILKRIMKS---PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKD 47 (62)
T ss_dssp SHHHHHHS---CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHC---CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC
Confidence 35566543 478999999999999999999999999999987643
No 80
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=26.08 E-value=20 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
..|..--++++....-.-+.+.++|+++||.|.-||
T Consensus 6 e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~slY 41 (72)
T d1zk8a1 6 QKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 41 (72)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHhCCCHHHHH
Confidence 345566778888777778999999999999999998
No 81
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=25.82 E-value=28 Score=24.33 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHhh---CCCC-----cccHHHHHHHhccceeehhhhHHHhhhcccchhccCCeEE
Q 016090 78 LTKKFINLIKH---AEDG-----ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 78 LTkKFi~Ll~~---ap~g-----~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~i~ 132 (395)
|++-++.+... ..++ .+.-.++|+.+|+.+..+.-+++-|+--|+|+.. ++.|.
T Consensus 6 la~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~-~~~i~ 67 (81)
T d2gaua1 6 LAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALD-GKRIK 67 (81)
T ss_dssp HHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred HHHHHHHHHHHhCCCCCCCEEeecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec-CCEEE
Confidence 45555655542 2222 3566889999999999999999999999999865 44443
No 82
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=25.61 E-value=8.2 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=32.8
Q ss_pred cccHHHHHHHhccceeehhhhHHHhhhcccchhcc
Q 016090 93 ILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 93 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
.+...++|+.+++.|=-+--+++-||.-|||+|..
T Consensus 55 ~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~ 89 (162)
T d2fxaa1 55 GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 89 (162)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CcCHHHHHHHHcCCchhhHHHHHHHHHCCCceeec
Confidence 47899999999999999999999999999999873
No 83
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.48 E-value=17 Score=25.29 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
+....++++.+..-.-+.+.++|+..||.|.-||
T Consensus 9 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~iY 42 (74)
T d2g7sa1 9 ILQCARTLIIRGGYNSFSYADISQVVGIRNASIH 42 (74)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHhCccccCHHHHHHHHCcCcchHH
Confidence 5566778887766678999999999999999998
No 84
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.38 E-value=61 Score=24.65 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 150 ILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 150 ~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
-++..++.|...-+.|.+.|..+++++..+
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l 121 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 85
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.79 E-value=1.3e+02 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016090 143 EVDADASILQADIDNLSMEELRVDEQTRELRERLREL 179 (395)
Q Consensus 143 ~~~~~~~~Lq~El~~L~~~E~~LD~~I~~~~q~L~~L 179 (395)
++..++..|..+++.|..++..|...+..++..|+.+
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999875
No 86
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=24.68 E-value=21 Score=26.65 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCCe
Q 016090 82 FINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNR 130 (395)
Q Consensus 82 Fi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN~ 130 (395)
.+.+|. ++.....++|+.|++.+-.+.-=..+|+..|||......+
T Consensus 28 Il~~L~---~~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~ 73 (98)
T d1r1ta_ 28 LLSLLA---RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGR 73 (98)
T ss_dssp HHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECC
Confidence 445553 4568899999999999999999999999999997554333
No 87
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.54 E-value=23 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 76 GLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 76 glLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
..|..-.++++....-.-+.+.++|++.||.+.-||-
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~y~ 46 (78)
T d2o7ta1 10 EHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 46 (78)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHH
Confidence 4566778888888887889999999999999999983
No 88
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=24.47 E-value=18 Score=25.26 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
.|....++++.+..-.-+.+..+|+.+||+|.-||
T Consensus 9 ~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y 43 (75)
T d2hyja1 9 RILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 43 (75)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHHCcCHHHHH
Confidence 35566788888877778999999999999999988
No 89
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.81 E-value=35 Score=30.77 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCcHHHHH------HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 72 DSSLGLLT------KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 72 d~SLglLT------kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
-+-||.++ ...++.|.+..+..++|++++...++. .-||+.-|+.+|++...
T Consensus 177 LSdlG~~sY~~YW~~~i~~~L~~~~~~~~si~dis~~T~i~---~~Dii~tL~~l~~l~~~ 234 (270)
T d2ozua1 177 LSDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDFR 234 (270)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCceeHHHHHHHhCCC---HHHHHHHHHHCCCEEEE
Confidence 34678876 347778877788899999999999995 57999999999999543
No 90
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=23.69 E-value=16 Score=27.26 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=47.0
Q ss_pred HHHHHHHHHHH-hhCCCCcccHHHHHHHhccceeehhhhHH-HhhhcccchhccCCeEE
Q 016090 76 GLLTKKFINLI-KHAEDGILDLNKAAETLEVQKRRIYDITN-VLEGIGLIEKKLKNRIR 132 (395)
Q Consensus 76 glLTkKFi~Ll-~~ap~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~sKN~i~ 132 (395)
-.+=+|++..+ +.-.+|.+-|+.+|..|+-.+.-|=|++- -|--.|+|+|+.+.++.
T Consensus 4 d~~Dr~~L~~l~~~f~ggPVGl~tlA~~lgE~~~TiEdviEPyLiq~G~i~RTprGR~~ 62 (76)
T d1ixsb1 4 EKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVA 62 (76)
T ss_dssp CHHHHHHHHTTTSSSCSSCCCSHHHHGGGSSCTTHHHHTSHHHHHHTTSEEECSSSEEE
T ss_pred CHHHHHHHHHHHHHhCCCCccHHHHHHHHcCChhHHHHHhhHHHHHHhHHhhCCChHHh
Confidence 34567888865 45588899999999999999999988875 57789999999988753
No 91
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.20 E-value=42 Score=23.42 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=35.3
Q ss_pred CCCcccHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 90 EDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 90 p~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
.++.+...++|+.|+|.+=-.-..++-|+.-|||....-.
T Consensus 20 ~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y~ 59 (63)
T d2isya1 20 EGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDR 59 (63)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred cCCCCcHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcCCC
Confidence 3667899999999999999999999999999999876443
No 92
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=22.38 E-value=25 Score=24.32 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|....++++....-.-+.++++|+..||.+.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~ 43 (72)
T d1pb6a1 8 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLY 43 (72)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCHHHHHHHhCCChHHHHH
Confidence 355667888888778889999999999999999985
No 93
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=22.05 E-value=22 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
|..-.++++....-.-+.+.++|+..||.|.-||
T Consensus 6 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~y 39 (72)
T d1vi0a1 6 IIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIY 39 (72)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHHCcCHHHHH
Confidence 5567788888877778999999999999999998
No 94
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=21.63 E-value=32 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
|..-.++++....-.-+.|..+|+..||.+.-||
T Consensus 7 Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~~iy 40 (73)
T d1sgma1 7 ILHTASRLSQLQGYHATGLNQIVKESGAPKGSLY 40 (73)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 4556778888877788999999999999999888
No 95
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.42 E-value=98 Score=24.03 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016090 155 IDNLSMEELRVDEQTRELRE 174 (395)
Q Consensus 155 l~~L~~~E~~LD~~I~~~~q 174 (395)
|+.|+++-+.|.+.|++.+.
T Consensus 4 ~~~l~~~~~~l~~~~~~~~~ 23 (340)
T d1tbga_ 4 LDQLRQEAEQLKNQIRDARK 23 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 96
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=21.39 E-value=18 Score=27.12 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhh---CCCCcc-cHHHHHHHhccceeehhhhHHHhhhcccchhccCC
Q 016090 76 GLLTKKFINLIKH---AEDGIL-DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 129 (395)
Q Consensus 76 glLTkKFi~Ll~~---ap~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~sKN 129 (395)
..+...+.+.+.. .++..| ...++|+.|+|.+=-+-...+.|+.-|||+.....
T Consensus 12 ~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 69 (100)
T d1v4ra1 12 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 69 (100)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 4456666666644 356667 89999999999999999999999999999977544
No 97
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=21.09 E-value=29 Score=28.31 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCcccHHHHHHHhccceeehhhhHHHhhhcccchhc
Q 016090 80 KKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKK 126 (395)
Q Consensus 80 kKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 126 (395)
.+.+.+|.. +.....++|+.|++.+--+|-=+..|+.-|||+..
T Consensus 18 ~~Il~~L~~---~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~ 61 (194)
T d2p4wa1 18 RRILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESR 61 (194)
T ss_dssp HHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 346667754 56888999999999999999999999999999743
No 98
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=20.99 E-value=27 Score=24.49 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhCCCCcccHHHHHHHhccceeehh
Q 016090 78 LTKKFINLIKHAEDGILDLNKAAETLEVQKRRIY 111 (395)
Q Consensus 78 LTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIY 111 (395)
|....++++....-.-+.+..+|+..||.|.-||
T Consensus 16 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 49 (81)
T d1rkta1 16 ILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVY 49 (81)
T ss_dssp HHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCcCHHHHH
Confidence 4555667777777778999999999999999998
No 99
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.09 E-value=37 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCcccHHHHHHHh-----ccceeehhhhHHHhhhcccchhcc
Q 016090 81 KFINLIKHAEDGILDLNKAAETL-----EVQKRRIYDITNVLEGIGLIEKKL 127 (395)
Q Consensus 81 KFi~Ll~~ap~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~s 127 (395)
..+++|.++.+..++.+++-+.| .|.+=.||..++.|+-.|+|.+..
T Consensus 20 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~ 71 (134)
T d1mzba_ 20 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 71 (134)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEEEEEe
Confidence 35677777766678888887776 356677999999999999998764
No 100
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.07 E-value=30 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCCcccHHHHHHHhccceeehhh
Q 016090 77 LLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYD 112 (395)
Q Consensus 77 lLTkKFi~Ll~~ap~g~ldLn~aA~~L~VqKRRIYD 112 (395)
.|..-.++++....-.-+.++++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~ 41 (68)
T d2d6ya1 6 RIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYA 41 (68)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCHHHHHHHHCcchhHHHH
Confidence 455667888888888889999999999999999984
Done!