Query 016091
Match_columns 395
No_of_seqs 268 out of 1036
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 2.1E-45 4.6E-50 360.9 9.2 187 45-231 11-209 (304)
2 smart00415 HSF heat shock fact 100.0 1.1E-34 2.3E-39 245.3 6.5 94 45-138 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 7.5E-35 1.6E-39 244.7 4.7 93 48-140 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 2.5E-33 5.3E-38 272.9 7.2 140 45-184 9-167 (282)
5 PF00178 Ets: Ets-domain; Int 96.2 0.0036 7.8E-08 51.7 2.7 69 50-119 5-80 (85)
6 PF03310 Cauli_DNA-bind: Cauli 95.4 0.031 6.7E-07 49.0 5.3 73 173-248 2-75 (121)
7 smart00413 ETS erythroblast tr 93.6 0.1 2.3E-06 43.4 4.2 58 51-108 6-65 (87)
8 KOG3806 Predicted transcriptio 86.1 1.5 3.3E-05 41.0 5.4 62 46-107 68-131 (177)
9 PF06005 DUF904: Protein of un 85.4 5.8 0.00013 31.8 7.7 44 161-204 23-66 (72)
10 COG3074 Uncharacterized protei 81.5 10 0.00022 30.6 7.5 41 161-201 23-63 (79)
11 PF04340 DUF484: Protein of un 80.6 7.5 0.00016 36.9 7.9 75 120-221 17-91 (225)
12 TIGR02449 conserved hypothetic 78.8 25 0.00054 27.8 8.9 56 161-216 5-60 (65)
13 PF02183 HALZ: Homeobox associ 77.7 9.8 0.00021 27.8 5.9 40 161-200 3-42 (45)
14 PF11932 DUF3450: Protein of u 77.6 15 0.00032 35.5 9.1 60 160-219 53-112 (251)
15 PRK15422 septal ring assembly 75.9 20 0.00043 29.5 7.8 41 161-201 23-70 (79)
16 PF12325 TMF_TATA_bd: TATA ele 73.3 25 0.00053 31.0 8.4 54 160-213 34-90 (120)
17 PF08826 DMPK_coil: DMPK coile 73.0 25 0.00054 27.5 7.4 46 161-210 6-51 (61)
18 TIGR03752 conj_TIGR03752 integ 72.1 24 0.00051 37.8 9.4 56 160-215 70-126 (472)
19 TIGR02449 conserved hypothetic 70.5 17 0.00037 28.8 6.1 42 164-205 22-63 (65)
20 PF10473 CENP-F_leu_zip: Leuci 68.9 38 0.00082 30.6 8.8 58 160-217 56-113 (140)
21 TIGR02894 DNA_bind_RsfA transc 68.9 34 0.00074 31.7 8.6 53 165-217 99-151 (161)
22 PF12329 TMF_DNA_bd: TATA elem 66.6 42 0.00092 26.9 7.8 54 161-214 17-70 (74)
23 PF10168 Nup88: Nuclear pore c 62.6 35 0.00077 38.4 8.9 60 160-219 562-621 (717)
24 PF04111 APG6: Autophagy prote 61.4 83 0.0018 31.8 10.6 50 160-209 47-96 (314)
25 PF10224 DUF2205: Predicted co 60.7 94 0.002 25.6 9.1 54 164-217 9-63 (80)
26 PF11932 DUF3450: Protein of u 58.6 1.2E+02 0.0025 29.3 10.8 69 161-232 47-115 (251)
27 PF06005 DUF904: Protein of un 56.0 1E+02 0.0023 24.6 9.1 45 163-207 11-55 (72)
28 PF02403 Seryl_tRNA_N: Seryl-t 53.4 74 0.0016 26.5 7.5 50 160-209 40-99 (108)
29 PRK00888 ftsB cell division pr 50.6 54 0.0012 28.0 6.2 33 165-197 29-61 (105)
30 PRK10963 hypothetical protein; 50.1 65 0.0014 30.8 7.4 75 120-221 14-88 (223)
31 PF04728 LPP: Lipoprotein leuc 49.9 1E+02 0.0022 23.8 6.9 40 162-201 9-48 (56)
32 PF02183 HALZ: Homeobox associ 49.1 43 0.00092 24.5 4.6 32 161-192 10-41 (45)
33 PRK11637 AmiB activator; Provi 47.2 1.1E+02 0.0024 31.8 9.2 13 188-200 107-119 (428)
34 PF05377 FlaC_arch: Flagella a 46.9 1.3E+02 0.0028 23.2 7.0 33 168-200 5-37 (55)
35 PF14282 FlxA: FlxA-like prote 46.9 1E+02 0.0023 26.1 7.4 24 161-184 17-40 (106)
36 PF10779 XhlA: Haemolysin XhlA 46.7 1.4E+02 0.0031 23.4 8.9 55 161-215 4-58 (71)
37 KOG4005 Transcription factor X 46.4 95 0.0021 30.8 7.8 53 160-212 94-151 (292)
38 PRK09039 hypothetical protein; 46.3 1.1E+02 0.0024 31.4 8.7 50 169-218 136-185 (343)
39 PRK09039 hypothetical protein; 46.2 1.3E+02 0.0028 30.8 9.2 48 161-208 121-168 (343)
40 KOG4196 bZIP transcription fac 46.1 97 0.0021 27.9 7.2 40 168-214 79-118 (135)
41 KOG4460 Nuclear pore complex, 46.1 83 0.0018 34.7 8.0 58 163-220 588-645 (741)
42 PF07676 PD40: WD40-like Beta 45.9 16 0.00034 24.6 1.9 23 56-78 4-26 (39)
43 PF06156 DUF972: Protein of un 44.9 1E+02 0.0023 26.5 7.1 30 161-190 20-49 (107)
44 KOG0977 Nuclear envelope prote 44.5 1.3E+02 0.0028 33.0 9.3 69 160-228 166-247 (546)
45 PRK06800 fliH flagellar assemb 43.7 1.7E+02 0.0036 28.1 8.7 58 161-218 36-111 (228)
46 PF10779 XhlA: Haemolysin XhlA 43.2 1.6E+02 0.0035 23.1 7.9 54 175-228 4-57 (71)
47 COG5481 Uncharacterized conser 42.0 1.7E+02 0.0036 23.1 7.0 28 171-198 5-32 (67)
48 PF04156 IncA: IncA protein; 41.9 1.9E+02 0.0041 26.3 8.9 59 160-218 92-150 (191)
49 smart00338 BRLZ basic region l 41.7 66 0.0014 24.5 5.0 26 161-186 31-56 (65)
50 COG1579 Zn-ribbon protein, pos 41.7 98 0.0021 30.4 7.2 47 161-207 36-82 (239)
51 PF06156 DUF972: Protein of un 41.5 68 0.0015 27.6 5.5 27 163-189 8-34 (107)
52 KOG4196 bZIP transcription fac 41.2 94 0.002 28.0 6.3 6 101-106 34-39 (135)
53 PRK11637 AmiB activator; Provi 40.1 1.5E+02 0.0033 30.8 8.9 44 163-206 75-118 (428)
54 COG3074 Uncharacterized protei 40.0 2E+02 0.0043 23.4 7.4 46 164-209 12-57 (79)
55 PF07200 Mod_r: Modifier of ru 39.6 2.1E+02 0.0045 25.2 8.5 45 166-210 44-88 (150)
56 PF11414 Suppressor_APC: Adeno 39.5 95 0.0021 25.7 5.8 44 160-203 4-47 (84)
57 PF00038 Filament: Intermediat 39.1 1.8E+02 0.0038 28.6 8.8 45 161-205 214-258 (312)
58 PRK14127 cell division protein 38.9 92 0.002 27.0 5.9 37 165-201 32-68 (109)
59 PF08317 Spc7: Spc7 kinetochor 38.3 2.1E+02 0.0045 28.9 9.3 10 97-106 127-136 (325)
60 PF05377 FlaC_arch: Flagella a 38.2 1.5E+02 0.0033 22.8 6.3 38 175-212 5-42 (55)
61 PF10805 DUF2730: Protein of u 38.0 1.7E+02 0.0037 24.9 7.4 48 163-210 42-91 (106)
62 PRK05431 seryl-tRNA synthetase 37.4 1.3E+02 0.0028 31.7 7.8 52 160-211 39-93 (425)
63 COG1579 Zn-ribbon protein, pos 37.0 2.2E+02 0.0048 28.0 8.8 51 160-210 93-143 (239)
64 PF08227 DASH_Hsk3: DASH compl 36.9 1.7E+02 0.0037 21.6 6.1 39 179-218 4-42 (45)
65 PF07106 TBPIP: Tat binding pr 36.9 1.6E+02 0.0035 26.6 7.5 58 161-218 77-136 (169)
66 COG3159 Uncharacterized protei 36.5 66 0.0014 31.2 5.0 76 117-219 12-87 (218)
67 PF10018 Med4: Vitamin-D-recep 36.2 3.6E+02 0.0077 25.0 10.8 57 168-228 7-63 (188)
68 PF09304 Cortex-I_coil: Cortex 36.1 2.8E+02 0.0061 24.1 8.3 52 160-211 20-71 (107)
69 PF10226 DUF2216: Uncharacteri 35.6 2.2E+02 0.0047 27.2 8.2 24 161-184 53-76 (195)
70 smart00787 Spc7 Spc7 kinetocho 35.2 2.5E+02 0.0055 28.5 9.3 19 167-185 176-194 (312)
71 PHA01819 hypothetical protein 34.6 52 0.0011 28.2 3.6 29 195-226 74-102 (129)
72 PF11559 ADIP: Afadin- and alp 34.6 3.2E+02 0.007 24.1 9.5 11 102-112 9-19 (151)
73 PF13094 CENP-Q: CENP-Q, a CEN 34.4 2.2E+02 0.0047 25.5 7.9 25 174-198 45-69 (160)
74 PRK13729 conjugal transfer pil 34.3 2.1E+02 0.0045 30.9 8.8 43 171-213 77-119 (475)
75 PRK15396 murein lipoprotein; P 33.9 2.6E+02 0.0057 22.8 8.1 46 163-208 25-70 (78)
76 PF07106 TBPIP: Tat binding pr 33.8 1.3E+02 0.0027 27.3 6.3 53 160-212 83-137 (169)
77 PF04977 DivIC: Septum formati 33.5 1.3E+02 0.0028 23.2 5.5 10 219-228 52-61 (80)
78 PF07798 DUF1640: Protein of u 33.4 2.2E+02 0.0047 26.2 7.8 14 99-112 6-19 (177)
79 PF07407 Seadorna_VP6: Seadorn 33.3 2E+02 0.0044 29.8 8.1 28 158-185 34-61 (420)
80 PF09726 Macoilin: Transmembra 33.2 2.1E+02 0.0045 32.4 9.0 26 160-185 422-447 (697)
81 PLN02320 seryl-tRNA synthetase 33.0 1.6E+02 0.0036 31.9 7.9 51 160-210 104-163 (502)
82 PF04880 NUDE_C: NUDE protein, 33.0 23 0.00049 32.9 1.3 36 161-201 19-54 (166)
83 TIGR00414 serS seryl-tRNA synt 33.0 1.9E+02 0.0042 30.3 8.3 53 160-212 41-97 (418)
84 PF04977 DivIC: Septum formati 32.8 2.2E+02 0.0047 21.8 6.8 32 165-196 19-50 (80)
85 PF08614 ATG16: Autophagy prot 32.5 2.7E+02 0.0058 25.8 8.4 9 222-230 176-184 (194)
86 PRK10803 tol-pal system protei 32.4 2.3E+02 0.0049 27.9 8.2 40 161-200 38-77 (263)
87 PRK10884 SH3 domain-containing 32.2 1.4E+02 0.0031 28.5 6.6 26 107-132 65-92 (206)
88 PLN02678 seryl-tRNA synthetase 31.9 1.8E+02 0.0039 31.1 7.9 49 160-208 44-102 (448)
89 TIGR00219 mreC rod shape-deter 31.8 1.4E+02 0.0029 29.8 6.6 23 164-186 67-89 (283)
90 TIGR03752 conj_TIGR03752 integ 31.7 2.9E+02 0.0063 29.9 9.3 42 160-201 63-104 (472)
91 COG4942 Membrane-bound metallo 31.5 2.5E+02 0.0055 29.9 8.8 44 161-204 64-107 (420)
92 PF10211 Ax_dynein_light: Axon 31.3 2.4E+02 0.0053 26.4 7.9 25 161-185 125-149 (189)
93 PF11853 DUF3373: Protein of u 31.2 45 0.00097 36.0 3.3 38 160-205 22-59 (489)
94 PF13874 Nup54: Nucleoporin co 31.1 3.1E+02 0.0067 24.3 8.2 43 163-205 44-86 (141)
95 PRK10884 SH3 domain-containing 31.1 2.9E+02 0.0063 26.4 8.5 20 178-197 140-159 (206)
96 PF11559 ADIP: Afadin- and alp 30.8 3.8E+02 0.0081 23.7 9.0 38 164-201 67-104 (151)
97 PF14817 HAUS5: HAUS augmin-li 30.8 2.7E+02 0.0058 31.2 9.2 39 172-210 81-119 (632)
98 PF07888 CALCOCO1: Calcium bin 30.7 2.1E+02 0.0045 31.5 8.2 44 161-204 141-184 (546)
99 PF04201 TPD52: Tumour protein 30.5 1.6E+02 0.0034 27.4 6.3 38 162-199 28-65 (162)
100 PF12325 TMF_TATA_bd: TATA ele 30.4 3.8E+02 0.0082 23.6 8.9 45 161-205 21-65 (120)
101 PF07407 Seadorna_VP6: Seadorn 30.3 1.7E+02 0.0036 30.4 6.9 50 162-211 31-82 (420)
102 PRK13182 racA polar chromosome 30.3 96 0.0021 28.9 4.9 65 121-185 35-107 (175)
103 PF10146 zf-C4H2: Zinc finger- 29.3 3.6E+02 0.0077 26.3 8.9 55 165-219 34-88 (230)
104 KOG4571 Activating transcripti 29.3 2.3E+02 0.0049 28.8 7.6 17 160-176 222-238 (294)
105 PRK13169 DNA replication intia 29.3 2.1E+02 0.0046 24.8 6.6 22 164-185 9-30 (110)
106 TIGR02132 phaR_Bmeg polyhydrox 29.1 2.9E+02 0.0063 26.2 7.8 60 160-219 83-142 (189)
107 PRK15396 murein lipoprotein; P 29.0 2.6E+02 0.0056 22.9 6.6 45 160-204 29-73 (78)
108 PF05524 PEP-utilisers_N: PEP- 28.6 1.5E+02 0.0033 25.1 5.7 55 178-232 36-91 (123)
109 KOG3119 Basic region leucine z 27.3 3.2E+02 0.007 27.0 8.4 58 160-217 191-248 (269)
110 smart00338 BRLZ basic region l 27.2 2.6E+02 0.0057 21.1 6.2 21 178-198 34-54 (65)
111 PRK13182 racA polar chromosome 27.0 2E+02 0.0044 26.8 6.5 45 160-206 96-140 (175)
112 COG3883 Uncharacterized protei 26.7 3.1E+02 0.0068 27.4 8.1 11 209-219 101-111 (265)
113 PF09787 Golgin_A5: Golgin sub 26.7 2.5E+02 0.0054 30.2 8.0 40 163-202 274-313 (511)
114 PF04728 LPP: Lipoprotein leuc 26.1 3.1E+02 0.0067 21.2 8.5 48 163-210 3-50 (56)
115 PF06160 EzrA: Septation ring 26.1 2.5E+02 0.0054 30.6 8.0 33 189-221 377-409 (560)
116 PRK13169 DNA replication intia 26.1 4.1E+02 0.009 23.1 7.8 25 162-186 21-45 (110)
117 PF08826 DMPK_coil: DMPK coile 25.9 3.2E+02 0.007 21.3 7.1 40 161-200 16-55 (61)
118 PF02388 FemAB: FemAB family; 25.6 4.5E+02 0.0098 27.3 9.5 57 159-215 238-297 (406)
119 KOG0804 Cytoplasmic Zn-finger 25.6 2.6E+02 0.0056 30.1 7.6 46 164-209 348-393 (493)
120 PRK00888 ftsB cell division pr 25.1 2E+02 0.0043 24.5 5.6 8 221-228 64-71 (105)
121 COG1382 GimC Prefoldin, chaper 24.9 2.7E+02 0.0057 24.7 6.4 39 162-200 69-107 (119)
122 cd00632 Prefoldin_beta Prefold 24.9 2.7E+02 0.0059 23.2 6.4 44 160-203 60-103 (105)
123 PRK08032 fliD flagellar cappin 24.6 2.5E+02 0.0054 29.8 7.5 29 173-201 409-437 (462)
124 TIGR02894 DNA_bind_RsfA transc 24.5 2.8E+02 0.006 25.8 6.7 37 174-210 101-137 (161)
125 PF14817 HAUS5: HAUS augmin-li 24.3 4.5E+02 0.0097 29.5 9.5 65 168-232 356-420 (632)
126 PRK06975 bifunctional uroporph 24.1 5.8E+02 0.013 28.5 10.5 61 161-221 351-415 (656)
127 COG5613 Uncharacterized conser 24.1 4.6E+02 0.01 27.5 8.8 45 160-204 327-371 (400)
128 PRK10803 tol-pal system protei 23.6 4.3E+02 0.0094 25.9 8.5 36 168-210 59-94 (263)
129 PF09726 Macoilin: Transmembra 23.6 4.1E+02 0.0089 30.1 9.2 34 161-194 416-449 (697)
130 PF04156 IncA: IncA protein; 23.6 5.6E+02 0.012 23.2 9.0 44 161-204 107-150 (191)
131 PF07889 DUF1664: Protein of u 23.3 3.9E+02 0.0084 23.8 7.2 10 223-232 107-116 (126)
132 PRK13729 conjugal transfer pil 23.2 2.7E+02 0.0059 30.1 7.3 37 168-204 81-117 (475)
133 PRK03947 prefoldin subunit alp 23.1 3.5E+02 0.0076 23.5 7.0 46 160-205 91-136 (140)
134 KOG4010 Coiled-coil protein TP 23.0 2.5E+02 0.0055 26.9 6.3 37 163-199 44-80 (208)
135 PF10376 Mei5: Double-strand r 22.8 4.3E+02 0.0094 25.6 8.1 60 161-220 136-196 (221)
136 PF13863 DUF4200: Domain of un 22.8 4.7E+02 0.01 22.1 8.2 25 175-199 79-103 (126)
137 PF08651 DASH_Duo1: DASH compl 22.6 4.2E+02 0.0092 21.5 7.0 25 208-232 42-66 (78)
138 PF01920 Prefoldin_2: Prefoldi 22.5 3.2E+02 0.007 22.0 6.4 42 160-201 59-100 (106)
139 PF08606 Prp19: Prp19/Pso4-lik 22.5 4.2E+02 0.0091 21.4 8.4 36 160-195 5-40 (70)
140 PF08781 DP: Transcription fac 22.4 4.1E+02 0.0089 24.2 7.3 11 224-234 34-44 (142)
141 PF04420 CHD5: CHD5-like prote 22.4 4.5E+02 0.0098 23.8 7.8 37 181-217 70-106 (161)
142 PRK15422 septal ring assembly 22.3 4.5E+02 0.0098 21.7 8.8 34 162-195 10-43 (79)
143 PRK02119 hypothetical protein; 22.1 3.7E+02 0.0081 21.4 6.3 8 208-215 36-43 (73)
144 PF10805 DUF2730: Protein of u 22.1 4.3E+02 0.0094 22.4 7.1 27 179-205 67-93 (106)
145 PHA01750 hypothetical protein 21.9 3.1E+02 0.0066 22.1 5.6 27 174-200 39-65 (75)
146 COG3290 CitA Signal transducti 21.6 8.5E+02 0.018 26.9 10.7 81 158-238 313-405 (537)
147 PF10473 CENP-F_leu_zip: Leuci 21.6 6.1E+02 0.013 22.9 9.7 59 161-219 22-80 (140)
148 PF12269 zf-CpG_bind_C: CpG bi 21.5 2.2E+02 0.0047 28.0 5.8 26 194-219 39-64 (236)
149 COG4942 Membrane-bound metallo 21.5 8.5E+02 0.018 26.0 10.4 39 165-203 40-78 (420)
150 PF15035 Rootletin: Ciliary ro 21.4 4.4E+02 0.0095 24.7 7.6 41 161-201 86-126 (182)
151 PF05064 Nsp1_C: Nsp1-like C-t 21.4 41 0.00088 29.1 0.7 50 161-210 62-111 (116)
152 PF12718 Tropomyosin_1: Tropom 21.0 4.6E+02 0.01 23.4 7.4 50 161-210 33-82 (143)
153 KOG3863 bZIP transcription fac 20.8 3.1E+02 0.0068 30.5 7.3 98 120-231 477-576 (604)
154 PF10146 zf-C4H2: Zinc finger- 20.6 6.9E+02 0.015 24.3 9.0 59 160-218 36-94 (230)
155 PF08581 Tup_N: Tup N-terminal 20.6 4.7E+02 0.01 21.3 8.1 48 163-210 4-58 (79)
156 KOG4497 Uncharacterized conser 20.3 98 0.0021 32.2 3.2 37 48-84 162-202 (447)
157 COG1730 GIM5 Predicted prefold 20.1 5.5E+02 0.012 23.3 7.7 43 160-202 91-133 (145)
158 PHA02047 phage lambda Rz1-like 20.1 4.8E+02 0.01 22.4 6.8 42 178-219 35-76 (101)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=2.1e-45 Score=360.89 Aligned_cols=187 Identities=47% Similarity=0.833 Sum_probs=171.8
Q ss_pred CCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccC--CCCceEecC
Q 016091 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD--PDRWEFANE 122 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~--~~~~eF~h~ 122 (395)
++++|+.|||.||+||++++||+|+++|+||||||+.+|++.+||+||||+||+|||||||+||||||. +++|+|+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CcccccccccccccccccCCcccc----ccC------CccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 123 GFLGGQKHLLKTIKRRRHVSQSMQ----QRG------GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (395)
Q Consensus 123 ~F~Rg~~~lL~~IkRkk~~s~~~~----q~~------~g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~q 192 (395)
+|+||+++||++|+||++...... ... ...++...+.++..++.+|+++++.|+.|+.+||+++..++.+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998854421 111 1123444566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhH
Q 016091 193 LSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 231 (395)
Q Consensus 193 l~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~ 231 (395)
++.+.+++...+.+|++|+.|+++++++|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998764
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=1.1e-34 Score=245.34 Aligned_cols=94 Identities=65% Similarity=1.213 Sum_probs=90.7
Q ss_pred CCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccCC----------
Q 016091 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDP---------- 114 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~---------- 114 (395)
.+|+|+.|||+||+||++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCceEecCCccccccccccccccc
Q 016091 115 -DRWEFANEGFLGGQKHLLKTIKRR 138 (395)
Q Consensus 115 -~~~eF~h~~F~Rg~~~lL~~IkRk 138 (395)
+.|+|+|++|+||+++||..|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999996
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=7.5e-35 Score=244.72 Aligned_cols=93 Identities=55% Similarity=0.975 Sum_probs=81.5
Q ss_pred chHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccCCC---------Cce
Q 016091 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPD---------RWE 118 (395)
Q Consensus 48 ~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~~~---------~~e 118 (395)
.||.|||+||+||+++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999643 399
Q ss_pred EecCCccccccccccccccccc
Q 016091 119 FANEGFLGGQKHLLKTIKRRRH 140 (395)
Q Consensus 119 F~h~~F~Rg~~~lL~~IkRkk~ 140 (395)
|+||+|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=2.5e-33 Score=272.94 Aligned_cols=140 Identities=36% Similarity=0.678 Sum_probs=110.0
Q ss_pred CCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccC-C---------
Q 016091 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD-P--------- 114 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~-~--------- 114 (395)
.++.|+.|||.||++|++.++|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 457999999999999999999999999999999999999999999999999999999999999999996 1
Q ss_pred CCceEecCCcccccccccccccccccCCccccccCCc-cc---ccccc-----CCchHHHHHHHHHHHHHHHHHHHHHH
Q 016091 115 DRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE-AC---LEVGQ-----YGLDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 115 ~~~eF~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g-~~---~E~~~-----~~l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
+.|+|.|++|++|..++|++|+|++.++....-.+.+ .+ .++.. ..+..++..|....+.++..+..|+.
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~ 167 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKE 167 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccchhhhhhhchhcccCcchhHHhhhhHHHhhhhccccc
Confidence 2499999999999999999999988876542111111 11 12221 23445555555555555555555543
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=96.19 E-value=0.0036 Score=51.66 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=50.7
Q ss_pred HHHHHHhccCCCCCCeeEEcC-CCCeEEEecCchhhhhhcc--CCcCCCChhhHHhhhcccCc----cccCCCCceE
Q 016091 50 LTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP--KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEF 119 (395)
Q Consensus 50 l~KL~~ml~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP--~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF 119 (395)
..=|.++|.|+++.++|+|.. .+.-|.|.||+++++. .. +.-..-+|.++-|-|..|.= .|+...+..|
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l-WG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y 80 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL-WGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY 80 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH-HHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH-HHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence 445788999999999999999 9999999999999863 22 22234578999999988742 3444455444
No 6
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=95.38 E-value=0.031 Score=49.02 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhHHHhhccC-CccCCccccC
Q 016091 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHRRELG-GVQTGRKRRL 248 (395)
Q Consensus 173 ~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~e~~k~l~-~~~~krkRrl 248 (395)
+.++.||..|++.+..+...+++|.+++...++.+++|..+-|+++++ |...+.+-+-++++- ++..++++++
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kelle~Lk~q~d~~i 75 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKELLEALKKQPDKQI 75 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHHHHHHT-------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHhcCCCCCc
Confidence 457889999999999999999999999999999999999999999997 777777665455554 4443344443
No 7
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.58 E-value=0.1 Score=43.35 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHhccCCCCCCeeEEcC-CCCeEEEecCchhhhhhc-cCCcCCCChhhHHhhhcccC
Q 016091 51 TKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLL-PKYFKHSNFSSFIRQLNTYG 108 (395)
Q Consensus 51 ~KL~~ml~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vL-P~~Fkh~nfsSFvRQLN~YG 108 (395)
.=|.++|.||++.++|+|.. ++.-|.+.|+++.++.== -+-=..-||...-|-|..|-
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 34788999999999999998 688999999988776311 11112357888888887763
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=86.14 E-value=1.5 Score=40.97 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=43.6
Q ss_pred CCchHHHHHHhccCCCCCCeeEEcC-CCCeEEEecCchhhhhhccC-CcCCCChhhHHhhhccc
Q 016091 46 PPPFLTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLPK-YFKHSNFSSFIRQLNTY 107 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~Y 107 (395)
+-.-..=|-++|.|+++.++|+|.. +|--|.+.||++-++.==-+ -=..-||.-.-|-|..|
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3444555667889999999999998 68899999999988742111 11234666666666654
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=85.37 E-value=5.8 Score=31.83 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
|..+++.||..+..|..+...|+++.+.++.+..+-.+|++++-
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665566666555555555555555554433
No 10
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.52 E-value=10 Score=30.58 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
|.-||+.||..++.|..|+..+++....+..+-..+.+...
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888777666555444444444333
No 11
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=80.55 E-value=7.5 Score=36.90 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=35.8
Q ss_pred ecCCcccccccccccccccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 120 ~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
.||.|...+++||..|+=..+. + + .+ ......+..||++.+.++.++..|.+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~~-------~-~-av------------------SL~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHPS-------G-G-AV------------------SLVERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp ---------------------------------HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCCC-------C-C-cc------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988643211 1 1 11 112233567777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 016091 200 LLSTEKKQQQMMTFLAKALKNP 221 (395)
Q Consensus 200 l~~~E~kQqqmm~FLak~~qnp 221 (395)
-+..+..++++..+..+++.=.
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~ 91 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAAR 91 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 8888999999988888888744
No 12
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=78.76 E-value=25 Score=27.83 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAK 216 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak 216 (395)
+...|++|=.-.+.|..|...|++++.....+=..+.+++.....+...|+.=|..
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666666666666777777776666666667777777777777777665543
No 13
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.69 E-value=9.8 Score=27.85 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
++.+.+.||.....|..+...|.++.+.+..++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777888888888888888888777777777776655
No 14
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.61 E-value=15 Score=35.52 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
.+..++..|+++.+.|...+.++.........++..+++++..++...++|.-+|.+++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666667777777777777777777777666654
No 15
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.90 E-value=20 Score=29.45 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVR-------LRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~k-------LrQqqq~~~~ql~~meeRl~ 201 (395)
|.-||+.||.++..|..|+.. |+++.+.++.+...-++|++
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888777 44444444444444444444
No 16
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.35 E-value=25 Score=30.95 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQS---RDQLSAMEDRLLSTEKKQQQMMTF 213 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~---~~ql~~meeRl~~~E~kQqqmm~F 213 (395)
.+..++.+|...+..+..||++|-...... ..++..++.+++.++.+.+.++..
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666677777776555333 344555666666666555554433
No 17
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.97 E-value=25 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
|+.|| +-++.|..||.+.+-.+..+..+|+..+.|.+.++.....+
T Consensus 6 L~~Ei----rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 6 LEAEI----RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 66888999999999888888888888888888777666655
No 18
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.06 E-value=24 Score=37.84 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS-AMEDRLLSTEKKQQQMMTFLA 215 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~-~meeRl~~~E~kQqqmm~FLa 215 (395)
.+..++..|..++..|.+|..+||+...++..+++ +++..-..+.+.++|+..-+.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46667777777777777788888777666666654 333333334444455544433
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.54 E-value=17 Score=28.79 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
|-..|+.+...+..|-..|.+.......++.+|-.||..+|+
T Consensus 22 EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 22 ENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 333444444444445555555566667777888888887774
No 20
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.93 E-value=38 Score=30.62 Aligned_cols=58 Identities=22% Similarity=0.340 Sum_probs=40.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~ 217 (395)
.|..++..+-...+.|..|+..++.+...+...++.+..|+..++..+.-+..+|..+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3666666666667777777777777777777777777787777777766655555433
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.91 E-value=34 Score=31.69 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~ 217 (395)
...++.++..|..|+..|+++...+..++..++.++..++..=+.|+..+-++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777777777776666666666665554
No 22
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.60 E-value=42 Score=26.85 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FL 214 (395)
|-.|-+.|.+....+..-|.+||.+.......+..+..++...+.....+-.+|
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555565666666666667777766666666666666666666555554444
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.58 E-value=35 Score=38.42 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
.+...+..|+...+.-..+|..++++...+......+.+|+.....+|..++.=+.++++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777888888888778777788888888888888888877776665
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.38 E-value=83 Score=31.82 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqq 209 (395)
.+..++..|+.+...|.+|+..|.++...+..++..++.+...+.....+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~ 96 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE 96 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999888888888888887766654443
No 25
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=60.74 E-value=94 Score=25.56 Aligned_cols=54 Identities=15% Similarity=0.412 Sum_probs=36.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKR-DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (395)
Q Consensus 164 Eie~LKr-d~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~ 217 (395)
+++++.+ .++.|..++..|+.....+..++...++.+..++...+-+..++.-+
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 37788888888888888888888877777777766555444443333
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.57 E-value=1.2e+02 Score=29.34 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
+..+-..|..+...|..|+..|+.++..+..++...+.++..+++++.++-.-...+. .++.+++..-+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~---p~m~~m~~~L~ 115 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV---PLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4555566666666666666666666666666667777777777766666655544444 35555555443
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.01 E-value=1e+02 Score=24.65 Aligned_cols=45 Identities=7% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQ 207 (395)
..|.++=.....|..|+..|+.+......+...+++......+.+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444344445555555555544444333444444433333333
No 28
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.41 E-value=74 Score=26.49 Aligned_cols=50 Identities=28% Similarity=0.506 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQ----------HQQQSRDQLSAMEDRLLSTEKKQQQ 209 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQ----------qqq~~~~ql~~meeRl~~~E~kQqq 209 (395)
.+..+++.|+..++.+..+|..+.. +-..+..++..++.++...+.+.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888877755 2333444444555555444444333
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.61 E-value=54 Score=27.98 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~me 197 (395)
+..++++...+.+|+.+|++++..+..++..+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555556666666666655555544444443
No 30
>PRK10963 hypothetical protein; Provisional
Probab=50.13 E-value=65 Score=30.77 Aligned_cols=75 Identities=12% Similarity=0.234 Sum_probs=45.1
Q ss_pred ecCCcccccccccccccccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 120 ~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
.||.|.-.+++||..|+=.-+. + | .+ +|.+ ..+..||++...++.++..|.+.
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~~-------~-g-aV-----SL~E-------------rQ~~~LR~r~~~Le~~l~~Li~~ 66 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHPV-------R-G-TV-----SLVE-------------WQMARQRNHIHVLEEEMTLLMEQ 66 (223)
T ss_pred HCchHHhhCHHHHHhccCCCCC-------C-C-ee-----cHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999977543221 1 1 11 1211 12445566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 016091 200 LLSTEKKQQQMMTFLAKALKNP 221 (395)
Q Consensus 200 l~~~E~kQqqmm~FLak~~qnp 221 (395)
-+..+...+++.....+++.-.
T Consensus 67 A~~Ne~l~~~~~~l~l~Ll~a~ 88 (223)
T PRK10963 67 AIANEDLFYRLLPLQSRLAAAD 88 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 6666666666666666665544
No 31
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.92 E-value=1e+02 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
..++..|..+...|..++..||...+..+.+-..-.+||.
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555444444444444444443
No 32
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.11 E-value=43 Score=24.51 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~q 192 (395)
|....+.|+.+...|..|...|+.+...+...
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666665554443
No 33
>PRK11637 AmiB activator; Provisional
Probab=47.24 E-value=1.1e+02 Score=31.84 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 016091 188 QSRDQLSAMEDRL 200 (395)
Q Consensus 188 ~~~~ql~~meeRl 200 (395)
.+..++..++.++
T Consensus 107 ~l~~eI~~~q~~l 119 (428)
T PRK11637 107 ELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 34
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.89 E-value=1.3e+02 Score=23.20 Aligned_cols=33 Identities=9% Similarity=0.312 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
|..+...|...+..+|.+++.+...+..+++.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555454444443
No 35
>PF14282 FlxA: FlxA-like protein
Probab=46.86 E-value=1e+02 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
.+..|++|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 488899999999999999998877
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.67 E-value=1.4e+02 Score=23.40 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLa 215 (395)
+...+.+++.....+...+..|.+.......++..+.+++..++..+.=+..++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ii 58 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTII 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677777777776666666677777777766666554444433
No 37
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.41 E-value=95 Score=30.75 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL-----STEKKQQQMMT 212 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~-----~~E~kQqqmm~ 212 (395)
.|+.+|..|-.+++.|..|...||.+...+.++-..+..++. -++.+|++++.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHN 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 367788888888888888888888877766655554444443 34455555543
No 38
>PRK09039 hypothetical protein; Validated
Probab=46.29 E-value=1.1e+02 Score=31.35 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 169 KRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 169 Krd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
..+...|.++|..||.|+..+...|...+.+.+..+.+...+-.-|..++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444445555555554444444444444444333
No 39
>PRK09039 hypothetical protein; Validated
Probab=46.23 E-value=1.3e+02 Score=30.85 Aligned_cols=48 Identities=31% Similarity=0.365 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQq 208 (395)
+..++..+|........+|..|++|...++.|+.+++..|...|.+-.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666666666666665543
No 40
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=46.14 E-value=97 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FL 214 (395)
|..++..|++||.+|+ .++..|..++.....+..++..|-
T Consensus 79 LE~~k~~L~qqv~~L~-------~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLK-------EENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444555555555554 455666667777777777777664
No 41
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.09 E-value=83 Score=34.66 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKN 220 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qn 220 (395)
..+..|++.+..-.++|..++++...+......+++|+....-+|.-++.-+.++++-
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3344444444444455555555555555555555555555555555555555555443
No 42
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=45.93 E-value=16 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=16.5
Q ss_pred hccCCCCCCeeEEcCCCCeEEEe
Q 016091 56 MVEDLSTDAIVSWSRTRNSFIVW 78 (395)
Q Consensus 56 ml~dp~~~~iIsWs~~G~sFiI~ 78 (395)
+++.+..+....|||||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45667777788999999998654
No 43
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.91 E-value=1e+02 Score=26.46 Aligned_cols=30 Identities=40% Similarity=0.490 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 190 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~ 190 (395)
+..++..||.....|..|.+.|+-+++.++
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.45 E-value=1.3e+02 Score=33.00 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh--cCchHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQ-------QQSRDQLSAMEDRLLSTE----KKQQQMMTFLAKAL--KNPSFFQQ 226 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqq-------q~~~~ql~~meeRl~~~E----~kQqqmm~FLak~~--qnp~Fi~q 226 (395)
.+++++..||+++.-|..+|..+|.+. ....++++.|.++|..+. +.+.+...+.++-. .++.|+..
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 356666677777777777777666542 233456666667776665 33444455555555 45566554
Q ss_pred HH
Q 016091 227 LA 228 (395)
Q Consensus 227 Lv 228 (395)
=+
T Consensus 246 eL 247 (546)
T KOG0977|consen 246 EL 247 (546)
T ss_pred HH
Confidence 33
No 45
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=43.74 E-value=1.7e+02 Score=28.09 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQ------------------LSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~q------------------l~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
+..+.+.|...+..|..|+..|+++||.+.++ ++.|+..-..-++.++++.--.+..+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~L 111 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELL 111 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777776655442 33344444445555666544444444
No 46
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.23 E-value=1.6e+02 Score=23.07 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLv 228 (395)
+...+.++...+.+....+..+|.+....+.....+-.-|.++-.|..++..++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~i 57 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777778888888888888887777777777777776665544
No 47
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=42.03 E-value=1.7e+02 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 171 DRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (395)
Q Consensus 171 d~~~L~~El~kLrQqqq~~~~ql~~mee 198 (395)
++..+...+.+|||++.....-+.+|.+
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555777889999999888887777765
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.89 E-value=1.9e+02 Score=26.33 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=44.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
.+..+++.+.+....+..++..++...+.....++..+++++..+.....|..=+....
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888877777777777777777777777777766555554
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=41.69 E-value=66 Score=24.53 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
|+.++..|...+..|..++..|+++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.65 E-value=98 Score=30.43 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQ 207 (395)
+..++++++++...+..++..++.+.......++.+++|+...+.++
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777677777777777776666554
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.55 E-value=68 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQS 189 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~ 189 (395)
..+.+|..+...|..+|..|+++...+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444333
No 52
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=41.25 E-value=94 Score=27.97 Aligned_cols=6 Identities=50% Similarity=0.949 Sum_probs=3.6
Q ss_pred Hhhhcc
Q 016091 101 IRQLNT 106 (395)
Q Consensus 101 vRQLN~ 106 (395)
||+||.
T Consensus 34 VReLNr 39 (135)
T KOG4196|consen 34 VRELNR 39 (135)
T ss_pred HHHHHH
Confidence 566665
No 53
>PRK11637 AmiB activator; Provisional
Probab=40.11 E-value=1.5e+02 Score=30.85 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~k 206 (395)
.++..+.++...+..+|..++++...+..++..++.++..++.+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444433
No 54
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.00 E-value=2e+02 Score=23.38 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqq 209 (395)
.|.+-=.-...|..||..|+.....+.++.+........+++..+|
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneq 57 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQ 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333456677777777776666655555444444444444433
No 55
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.57 E-value=2.1e+02 Score=25.22 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 166 e~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
..|-+.+-.+..++..+|.+.......++.++.++...+++++.+
T Consensus 44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444455555555555555666666666555555544
No 56
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=39.51 E-value=95 Score=25.69 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
++...++.|.+++.+|+++|..+.+...=...+|+.+.+|.+.+
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999888777777888877776543
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.14 E-value=1.8e+02 Score=28.62 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
...|+..+++..+.|..++..|+.+...+..++..++.++...-.
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~ 258 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 456666777777777777777776666666666666655554333
No 58
>PRK14127 cell division protein GpsB; Provisional
Probab=38.87 E-value=92 Score=27.03 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
++.+-.+.+.|..|+..|+.+...++.++..++.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666778888888888888777766666666666654
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.26 E-value=2.1e+02 Score=28.89 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=4.7
Q ss_pred hhhHHhhhcc
Q 016091 97 FSSFIRQLNT 106 (395)
Q Consensus 97 fsSFvRQLN~ 106 (395)
..+|.|.+..
T Consensus 127 vK~~aRl~aK 136 (325)
T PF08317_consen 127 VKTYARLEAK 136 (325)
T ss_pred HHHHHHHHHH
Confidence 4445554444
No 60
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.21 E-value=1.5e+02 Score=22.76 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~ 212 (395)
|..++-++.-...+.+.+.+.+.+.+..+++..+.+|.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555544443
No 61
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.01 E-value=1.7e+02 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRL--RQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kL--rQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
..+....+-.+.+..++..| ++....++..|..|+.+++.++.+.+.|
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344455666666666666 6666666666666776666666666555
No 62
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.36 E-value=1.3e+02 Score=31.72 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMM 211 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq---qq~~~~ql~~meeRl~~~E~kQqqmm 211 (395)
.+..+++.|+.+++.+.++|..+++. ...+..+.+.+.+++..++.+...+-
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888999988888888764332 22344555556666666665555443
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.98 E-value=2.2e+02 Score=27.99 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.|..|++.+++....|..||..|...+..+..++..+..++..++...-.+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888888788877777777666544433
No 64
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=36.90 E-value=1.7e+02 Score=21.56 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 179 IVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 179 l~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
+..|-.|...+...+...++.++.+.... .+|.||.++.
T Consensus 4 ~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~~ 42 (45)
T PF08227_consen 4 YSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34444455555556666677766665444 7888887654
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.85 E-value=1.6e+02 Score=26.62 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL--SAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql--~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
|+.++..|+.+...|..++..|+.+...+...+ ..|...+..++....+|-.-|..+-
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565665555555555555555544443332 2344444444444455544444443
No 66
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.54 E-value=66 Score=31.18 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=48.4
Q ss_pred ceEecCCcccccccccccccccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 117 WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (395)
Q Consensus 117 ~eF~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~m 196 (395)
|-+.||.|.+-+++|+..|.=+.+.... -+.+ +-+ +.++|+.+..+..++.++
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~~t------VSLv-------e~q--------------l~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVAGT------VSLV-------ERQ--------------LARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCe------eehH-------HHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4468999999999999988765432111 1111 122 455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016091 197 EDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 197 eeRl~~~E~kQqqmm~FLak~~q 219 (395)
.+.-...+..+.+++..-..++.
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666777777777766666655
No 67
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.19 E-value=3.6e+02 Score=25.03 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLv 228 (395)
|-.-...|...|..| ++++....+|..++..+.....+...++.-|..+-+ -|..++
T Consensus 7 L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~---~L~~~~ 63 (188)
T PF10018_consen 7 LIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARK---ELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 333344455555555 344556788888888888888888888777777764 455555
No 68
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.15 E-value=2.8e+02 Score=24.11 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm 211 (395)
+|...|+..|..+..|.++-..|+..++.+..+-.....|+..++.+...+.
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776666666666666666666666666665544443
No 69
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.63 E-value=2.2e+02 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
.-.||..||..++.|+.|...||.
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888874
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.24 E-value=2.5e+02 Score=28.49 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016091 167 RLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 167 ~LKrd~~~L~~El~kLrQq 185 (395)
.|+..++.|..|+..|++.
T Consensus 176 ~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 176 KLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444433
No 71
>PHA01819 hypothetical protein
Probab=34.60 E-value=52 Score=28.20 Aligned_cols=29 Identities=41% Similarity=0.630 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Q 016091 195 AMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQ 226 (395)
Q Consensus 195 ~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~q 226 (395)
.+++|+..+| |||..||..-++.|+-++|
T Consensus 74 vleqri~sle---qq~ttflssq~qqpqqvqq 102 (129)
T PHA01819 74 VLEQRIASLE---QQVTTFLSSQMQQPQQVQQ 102 (129)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhCchhhhh
Confidence 4677777776 6899999999988865543
No 72
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=34.58 E-value=3.2e+02 Score=24.07 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=6.8
Q ss_pred hhhcccCcccc
Q 016091 102 RQLNTYGFRKV 112 (395)
Q Consensus 102 RQLN~YGFrKv 112 (395)
.+|-.+||-..
T Consensus 9 ~~L~s~G~~~~ 19 (151)
T PF11559_consen 9 QQLLSRGYPSD 19 (151)
T ss_pred HHHHHCCCCCC
Confidence 35666777554
No 73
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.39 E-value=2.2e+02 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 174 VLMAEIVRLRQHQQQSRDQLSAMED 198 (395)
Q Consensus 174 ~L~~El~kLrQqqq~~~~ql~~mee 198 (395)
.|..|+.+.....+....+|+.|+.
T Consensus 45 lLq~e~~~~e~~le~d~~~L~~Le~ 69 (160)
T PF13094_consen 45 LLQEEIEKEEAALERDYEYLQELEK 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 74
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.31 E-value=2.1e+02 Score=30.93 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 171 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTF 213 (395)
Q Consensus 171 d~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~F 213 (395)
....|.++|..||++.+.+..+.+.++++|+.++...+++-.=
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455666777777666666666667777777666666555433
No 75
>PRK15396 murein lipoprotein; Provisional
Probab=33.85 E-value=2.6e+02 Score=22.84 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQq 208 (395)
.++++|..+.+.|..++..+.+..+.++..+++-.+.-...-++..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666555554444433333333
No 76
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.84 E-value=1.3e+02 Score=27.29 Aligned_cols=53 Identities=25% Similarity=0.438 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQ--QQSRDQLSAMEDRLLSTEKKQQQMMT 212 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqq--q~~~~ql~~meeRl~~~E~kQqqmm~ 212 (395)
.+..++..|+.+...|..|+..|.... ..+...+..++..+..++.+...+-.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777776542 33444555555555555555554443
No 77
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.50 E-value=1.3e+02 Score=23.16 Aligned_cols=10 Identities=20% Similarity=0.820 Sum_probs=6.6
Q ss_pred cCchHHHHHH
Q 016091 219 KNPSFFQQLA 228 (395)
Q Consensus 219 qnp~Fi~qLv 228 (395)
.+|.++..++
T Consensus 52 ~~~~~ie~~A 61 (80)
T PF04977_consen 52 NDPDYIEKVA 61 (80)
T ss_pred CCHHHHHHHH
Confidence 5777776555
No 78
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.43 E-value=2.2e+02 Score=26.18 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=11.0
Q ss_pred hHHhhhcccCcccc
Q 016091 99 SFIRQLNTYGFRKV 112 (395)
Q Consensus 99 SFvRQLN~YGFrKv 112 (395)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 58888888888654
No 79
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.29 E-value=2e+02 Score=29.79 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=18.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 158 QYGLDGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 158 ~~~l~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
.++|..|-++||++++.|..|+.+|+.+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777443
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.16 E-value=2.1e+02 Score=32.41 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
.|+.++.+||.|.+...+-=..||++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 47777777777766655554555555
No 81
>PLN02320 seryl-tRNA synthetase
Probab=33.01 E-value=1.6e+02 Score=31.93 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVR---------LRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~k---------LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+..+++.|+.+++.+..+|.. |+.+-..++.++..++..+..++.+.+++
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888777754 22233344444555555555444444443
No 82
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=33.01 E-value=23 Score=32.93 Aligned_cols=36 Identities=25% Similarity=0.523 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
|+.|| .+++.|..++++||-+..+++.++ .+.+++.
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHH----HHHHHHHHCH----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 45555 445556666666666655555555 4444443
No 83
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=32.99 E-value=1.9e+02 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq----qq~~~~ql~~meeRl~~~E~kQqqmm~ 212 (395)
.+..+++.|+.+++.+.++|..+.+. ...+..+++.+.+++..++.+...+-.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999998888775432 234455566666666666665555433
No 84
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.79 E-value=2.2e+02 Score=21.84 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~m 196 (395)
+.+++.+.+.|..++..++++...+..++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555544444444
No 85
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.49 E-value=2.7e+02 Score=25.85 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.9
Q ss_pred hHHHHHHHh
Q 016091 222 SFFQQLAQS 230 (395)
Q Consensus 222 ~Fi~qLvq~ 230 (395)
..|.+++..
T Consensus 176 ~Lv~Rwm~~ 184 (194)
T PF08614_consen 176 ELVERWMQR 184 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.39 E-value=2.3e+02 Score=27.86 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
++..+.+|.+..+.-.+-+..|.++...++.++..|+.++
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQI 77 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4555555544433322223333333333333333333333
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.19 E-value=1.4e+02 Score=28.52 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=15.0
Q ss_pred cCccccC--CCCceEecCCccccccccc
Q 016091 107 YGFRKVD--PDRWEFANEGFLGGQKHLL 132 (395)
Q Consensus 107 YGFrKv~--~~~~eF~h~~F~Rg~~~lL 132 (395)
.||.+|. .++--|-|..|....|..-
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~ 92 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLR 92 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHH
Confidence 3566663 3344566676766666543
No 88
>PLN02678 seryl-tRNA synthetase
Probab=31.94 E-value=1.8e+02 Score=31.11 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLR----------QHQQQSRDQLSAMEDRLLSTEKKQQ 208 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLr----------Qqqq~~~~ql~~meeRl~~~E~kQq 208 (395)
.+..+++.|+.+++.+..+|..++ .+-..+..++..++..+..++.+..
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888886533 2223344444455555544444433
No 89
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=31.75 E-value=1.4e+02 Score=29.82 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqq 186 (395)
.+.+|+.+++.|..|+..|++++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~ 89 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQL 89 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555665555554443
No 90
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.73 E-value=2.9e+02 Score=29.86 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
.|-.++.+++++.+.|..+...|+.+...++.+...+..|++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 366777888888888888888888777766666665555554
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.54 E-value=2.5e+02 Score=29.86 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
|..+|..++.+...|..++....-..+.+...+..++.++...+
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444333
No 92
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.32 E-value=2.4e+02 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
+..++..|+.+...|..++..|+..
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 93
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=31.21 E-value=45 Score=36.01 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
.+..+++.++ +.+.|.+||..|++|+. .|.+|+..+|+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 3455555555 55556666666655544 55555555553
No 94
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=31.14 E-value=3.1e+02 Score=24.31 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
.++..++.....+...+..|+.....+..++..+..|+..+.+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~h 86 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSH 86 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666667777755555555555555555554443
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.07 E-value=2.9e+02 Score=26.41 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016091 178 EIVRLRQHQQQSRDQLSAME 197 (395)
Q Consensus 178 El~kLrQqqq~~~~ql~~me 197 (395)
|...|+++...+++++..++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.80 E-value=3.8e+02 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
++++|+.+.+.|...+..+.++.....+...+++.+++
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 97
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.78 E-value=2.7e+02 Score=31.21 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 172 ~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
+..|.+||.+||-+.+.+..+|..++..+...|...++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555554
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=30.70 E-value=2.1e+02 Score=31.49 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
+..+++...+++..|..+...|+++...++.++..|+..|...+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ 184 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE 184 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544444333
No 99
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=30.46 E-value=1.6e+02 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
+.|-++||.+..-+..||..|||-...-..++..+.++
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45556666666666666666666544433444444433
No 100
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.38 E-value=3.8e+02 Score=23.55 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
|...|.++.-+...|..++.+|.++......++..+..+......
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777778888888877777777777777777665543
No 101
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.32 E-value=1.7e+02 Score=30.38 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA--MEDRLLSTEKKQQQMM 211 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~--meeRl~~~E~kQqqmm 211 (395)
.+|.-.|+.++..|.+|+..|+.+...+++++.. +.++...++-....+.
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~ 82 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIV 82 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3567789999999999999999988888877764 6666655554444433
No 102
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=30.29 E-value=96 Score=28.94 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=31.7
Q ss_pred cCCcccccccccccccccccCCccccccCC--------ccccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 121 NEGFLGGQKHLLKTIKRRRHVSQSMQQRGG--------EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 121 h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~--------g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
|-.|.......|..|++-+..+-+...-.. ..+...|...+...++-|....+.|...|..|.+.
T Consensus 35 ~R~y~~~dl~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~ 107 (175)
T PRK13182 35 HYIFTEEDLQLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQ 107 (175)
T ss_pred CEEECHHHHHHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556778888877665443211000 01122233334444555555555555555555443
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.33 E-value=3.6e+02 Score=26.28 Aligned_cols=55 Identities=13% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
|..++++.+.|..|=..+-.+.+.+...+..||.-++..+....++..-..+.+.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666777777777666666666666555553
No 104
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.32 E-value=2.3e+02 Score=28.81 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLM 176 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~ 176 (395)
.-..++.+.|++++.+.
T Consensus 222 ~~~~~~~~rkr~qnk~A 238 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAA 238 (294)
T ss_pred CCchHHHHHHHHHhHHH
Confidence 45566667777766663
No 105
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.32 E-value=2.1e+02 Score=24.81 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQq 185 (395)
.+.+|..+...|..++..|+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~ 30 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQ 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 106
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.08 E-value=2.9e+02 Score=26.21 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
+++..|++|...-.-++-.+-.-..+.-.+...+..|++|++.++.|-.+|+..|-+--.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~ 142 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQK 142 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 466777776433333332222111133356778899999999999999999888774433
No 107
>PRK15396 murein lipoprotein; Provisional
Probab=29.01 E-value=2.6e+02 Score=22.90 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
.|..+++.|+.+...|..++..+|..-+..+.+-.+-.+||..+-
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999988899987653
No 108
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=28.63 E-value=1.5e+02 Score=25.07 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 178 EIVRLRQHQQQSRDQLSAMEDRLLSTE-KKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 178 El~kLrQqqq~~~~ql~~meeRl~~~E-~kQqqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
|+.+|.+-......+|..+.+++...- .....|+..-..++++|.|+..+...-.
T Consensus 36 E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 36 EIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 444455544455555555555543221 2233788888889999999887765543
No 109
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.27 E-value=3.2e+02 Score=27.00 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~ 217 (395)
.-+...++.+|.+.++...-.+-|+.+..++.++..|+.....+..+..+|..=|.++
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999998888888888888888888888887777777765555533
No 110
>smart00338 BRLZ basic region leucin zipper.
Probab=27.24 E-value=2.6e+02 Score=21.14 Aligned_cols=21 Identities=5% Similarity=0.327 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016091 178 EIVRLRQHQQQSRDQLSAMED 198 (395)
Q Consensus 178 El~kLrQqqq~~~~ql~~mee 198 (395)
++..|..+...+..++..|+.
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 111
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.01 E-value=2e+02 Score=26.81 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~k 206 (395)
.+..+|+.|.+..+.+..+|+..+ .-..+.+|..|-.+|+.+|++
T Consensus 96 ~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~~ 140 (175)
T PRK13182 96 TITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEAR 140 (175)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555432 112233444455555544443
No 112
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.72 E-value=3.1e+02 Score=27.43 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.7
Q ss_pred HHHHHHHHHhc
Q 016091 209 QMMTFLAKALK 219 (395)
Q Consensus 209 qmm~FLak~~q 219 (395)
.++.-=+|+|+
T Consensus 101 ~~l~~raRAmq 111 (265)
T COG3883 101 ELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 113
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.68 E-value=2.5e+02 Score=30.25 Aligned_cols=40 Identities=38% Similarity=0.476 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~ 202 (395)
-|++.|+.+...+..|+..|+.|.+....+++.++.++..
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999998888888888777664
No 114
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.15 E-value=3.1e+02 Score=21.19 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
..|++|-.|.+.|...+..|.+....++..+++..+.-...-++...+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888888888888888888888877777666555555444
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.14 E-value=2.5e+02 Score=30.62 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 016091 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (395)
Q Consensus 189 ~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp 221 (395)
+...+..+.+++..++..|..|..-|..+...-
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777665544
No 116
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.06 E-value=4.1e+02 Score=23.05 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
-.++..||.....|..|.+.|+-+.
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 117
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=25.86 E-value=3.2e+02 Score=21.30 Aligned_cols=40 Identities=8% Similarity=0.295 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
+..|+.+.|..+..+...|.....+...+..+|..|+.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444444444444444444
No 118
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.63 E-value=4.5e+02 Score=27.31 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 159 YGLDGELERLKRDRNVLMAEIVRLRQHQQ---QSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (395)
Q Consensus 159 ~~l~~Eie~LKrd~~~L~~El~kLrQqqq---~~~~ql~~meeRl~~~E~kQqqmm~FLa 215 (395)
..+..-++.|+...+.|..++.+|..... ...+++..+++++...+++..++..+++
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888866522 3456777888888888877777655543
No 119
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.61 E-value=2.6e+02 Score=30.14 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQ 209 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqq 209 (395)
+++..|.....+.+|...|++.+.++...-+.++++++....++..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k 393 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKK 393 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666776666666666666666555444443
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.13 E-value=2e+02 Score=24.52 Aligned_cols=8 Identities=13% Similarity=0.098 Sum_probs=3.8
Q ss_pred chHHHHHH
Q 016091 221 PSFFQQLA 228 (395)
Q Consensus 221 p~Fi~qLv 228 (395)
+.++..++
T Consensus 64 ~dyiEe~A 71 (105)
T PRK00888 64 QEAIEERA 71 (105)
T ss_pred HHHHHHHH
Confidence 35554443
No 121
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=2.7e+02 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.403 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
+.-++.|+...+.|...|..|+.+......++..|+..|
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777666655555554444443
No 122
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.94 E-value=2.7e+02 Score=23.18 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
..+.-+..|......|..++.++..+...+..++..++.+++.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888887777777777777643
No 123
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=24.65 E-value=2.5e+02 Score=29.84 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 173 ~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
..|...+.+|..++..+..+|..+++|+.
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554
No 124
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.48 E-value=2.8e+02 Score=25.84 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 174 ~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+..|...|+.+...+..++..|+..+..+++++..|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655555555555555555555544433
No 125
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.27 E-value=4.5e+02 Score=29.49 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
+..+.-.+.+.+..|+.+.+.+......=.+.++.++.|+|.|+.|=..+-+...-|.-|+..+-
T Consensus 356 ~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Ns 420 (632)
T PF14817_consen 356 LELEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNS 420 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33455556666666666666665555556667788889999999998888777777777776653
No 126
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.13 E-value=5.8e+02 Score=28.47 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQH----QQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNP 221 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQq----qq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp 221 (395)
+..++.++..+...+..|...+-++ ...+..++..++.++......|+++-.-+..+.+++
T Consensus 351 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r 415 (656)
T PRK06975 351 LDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 3344555555555555555443222 233455667788887777777776666666555554
No 127
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=4.6e+02 Score=27.51 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
.+..|..++..|.+.+...+..|....+.++++++.+.++++..-
T Consensus 327 ~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~m 371 (400)
T COG5613 327 ALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEM 371 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666665555554333
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.64 E-value=4.3e+02 Score=25.88 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
|.++.+.|..||.+||=+.+ .+..+++.+.++|..+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E-------~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQ-------ENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHH
Confidence 44444555555555555444 4444444444455544
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.61 E-value=4.1e+02 Score=30.10 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLS 194 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~ 194 (395)
-...+.+|..|...|..||...||.=+.++.++.
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis 449 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQIS 449 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 4566788888888899999988888888877743
No 130
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.58 E-value=5.6e+02 Score=23.23 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
+..++..++.+...+..+....+............+..+++.+.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444344444444444444444444444333
No 131
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.30 E-value=3.9e+02 Score=23.79 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=4.3
Q ss_pred HHHHHHHhHH
Q 016091 223 FFQQLAQSNA 232 (395)
Q Consensus 223 Fi~qLvq~~e 232 (395)
.+++.+...+
T Consensus 107 ~v~~~V~~Le 116 (126)
T PF07889_consen 107 SVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 132
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.22 E-value=2.7e+02 Score=30.10 Aligned_cols=37 Identities=5% Similarity=0.178 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
|.++...|.+|+..+.++.+.++..|+.++..++.++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444333
No 133
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=23.09 E-value=3.5e+02 Score=23.53 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
.++.-++.|++....|...+..|.++......++..+...+..+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888888888888888877777766666666666654443
No 134
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.04 E-value=2.5e+02 Score=26.85 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
.|-+.|+.+..-+..||+.|||-.-.-..++..+.++
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRK 80 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRK 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556665556666666655443333333333333
No 135
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=22.81 E-value=4.3e+02 Score=25.57 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ-HQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKN 220 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ-qqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qn 220 (395)
+..+-.+|.++.+....++.+|.. .++.+++.+..|+..+...+...|+.+.=|...+..
T Consensus 136 l~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 136 LEEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444455555555555555543 244567766677777776666666666655555544
No 136
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.79 E-value=4.7e+02 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
...||..|+.+...+...+..++++
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333333333
No 137
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.56 E-value=4.2e+02 Score=21.48 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 208 QQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 208 qqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
..|+.--.++++...|.++|+....
T Consensus 42 ~~LLd~w~~IlSQte~~~~Ll~dp~ 66 (78)
T PF08651_consen 42 NTLLDKWIRILSQTEHTQRLLLDPE 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4677777778887788888776654
No 138
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.49 E-value=3.2e+02 Score=22.02 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
..+.-++.|+.+...+..++.+|+.+...+..++..++..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777778888888888887777666666666665553
No 139
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=22.45 E-value=4.2e+02 Score=21.40 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~ 195 (395)
++.+=+..|+.+-.+++.|.-.||++...++.+|..
T Consensus 5 SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~ 40 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSH 40 (70)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999999999998888777653
No 140
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=22.39 E-value=4.1e+02 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=7.3
Q ss_pred HHHHHHhHHHh
Q 016091 224 FQQLAQSNAHR 234 (395)
Q Consensus 224 i~qLvq~~e~~ 234 (395)
++.|++++...
T Consensus 34 ~knLv~RN~~~ 44 (142)
T PF08781_consen 34 FKNLVQRNRQL 44 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56788877643
No 141
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.39 E-value=4.5e+02 Score=23.85 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (395)
Q Consensus 181 kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~ 217 (395)
||+.+......+++.+.+.+.....+...++..+..+
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~ 106 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWV 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554455554444433
No 142
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.34 E-value=4.5e+02 Score=21.71 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~ 195 (395)
+..|.+.=.....|..||..|+.+......+...
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444566667777777766555554444
No 143
>PRK02119 hypothetical protein; Provisional
Probab=22.14 E-value=3.7e+02 Score=21.42 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016091 208 QQMMTFLA 215 (395)
Q Consensus 208 qqmm~FLa 215 (395)
++.+.-|.
T Consensus 36 q~~id~L~ 43 (73)
T PRK02119 36 QFVIDKMQ 43 (73)
T ss_pred HHHHHHHH
Confidence 33333333
No 144
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.09 E-value=4.3e+02 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 179 IVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 179 l~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
+.+|+-....+...++.|+.+++.+.+
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333344445555555555543
No 145
>PHA01750 hypothetical protein
Probab=21.94 E-value=3.1e+02 Score=22.06 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 174 VLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 174 ~L~~El~kLrQqqq~~~~ql~~meeRl 200 (395)
...+|+.+|+.+.+.+....-.+++++
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555555555555544444444333
No 146
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=21.61 E-value=8.5e+02 Score=26.86 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=55.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCchHHH
Q 016091 158 QYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA------------MEDRLLSTEKKQQQMMTFLAKALKNPSFFQ 225 (395)
Q Consensus 158 ~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~------------meeRl~~~E~kQqqmm~FLak~~qnp~Fi~ 225 (395)
.|-...|+..|-.+.....+-...||-|.....|+|.. ..+=++.....||+...||...+++|..-.
T Consensus 313 tFRdktei~~L~eqLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~~yd~a~~~I~~~~~~qq~~~~~l~~~i~~~~lAg 392 (537)
T COG3290 313 TFRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAG 392 (537)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhHHHHHHhcccHHHHH
Confidence 45567777777777777777777777777777776643 333344555678899999999999984444
Q ss_pred HHHHhHHHhhccC
Q 016091 226 QLAQSNAHRRELG 238 (395)
Q Consensus 226 qLvq~~e~~k~l~ 238 (395)
=|+-+...-+|++
T Consensus 393 ~LlgK~~rArElg 405 (537)
T COG3290 393 FLLGKISRARELG 405 (537)
T ss_pred HHHhHHHHHHHcC
Confidence 4444444456665
No 147
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.61 E-value=6.1e+02 Score=22.94 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
+.+.|..|.++.+....+...+.-+..+.+..+..|+..+..+-..-+++-.=|..+..
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555455555555555555555544444444444444433
No 148
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=21.49 E-value=2.2e+02 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 194 SAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 194 ~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
...+.+++.++.+++.|..|++++-+
T Consensus 39 ~~v~~~l~eLe~~~~el~~~i~~~k~ 64 (236)
T PF12269_consen 39 QKVRNRLQELEKRFKELEAIIARAKQ 64 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666777888888887654
No 149
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.49 E-value=8.5e+02 Score=26.04 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
+++++++...+..+|...+++.+.+..+|+.++..+..+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~ 78 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASL 78 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333444333333333
No 150
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.43 E-value=4.4e+02 Score=24.71 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
|-.+++..+..+..|..+|.+|+++...+..+|..=+...+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888888888888888877666655554444443
No 151
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.42 E-value=41 Score=29.08 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
|..++.+++..+..|-.+|..+..+|..+..-|..||..+..+-..+...
T Consensus 62 L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~~~~~~ 111 (116)
T PF05064_consen 62 LYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLSNQSSQ 111 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 152
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.04 E-value=4.6e+02 Score=23.44 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
++.+|..|.+....|..+|-++..+.......+...+.+....+.-+..|
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
No 153
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=20.77 E-value=3.1e+02 Score=30.52 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=48.6
Q ss_pred ecCCcccccccccccccccccCCccccccCCc--cccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 120 ANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE--ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAME 197 (395)
Q Consensus 120 ~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g--~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~me 197 (395)
....|..-+..|+..|+||...+...+..... .|+ ..|+.+++.|+++++.|..|-..+ .+.|..|.
T Consensus 477 s~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I----~nLE~ev~~l~~eKeqLl~Er~~~-------d~~L~~~k 545 (604)
T KOG3863|consen 477 SKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCI----LNLEDEVEKLQKEKEQLLRERDEL-------DSTLGVMK 545 (604)
T ss_pred HhcccCHHHHHHhhccccccccchhccchhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 34456667888899999884432221111100 111 146667777766666665554444 44444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhH
Q 016091 198 DRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSN 231 (395)
Q Consensus 198 eRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~ 231 (395)
.++..+-+..=++ |..==.+|--..+++.+.
T Consensus 546 qqls~L~~~Vf~~---lrd~eg~~~sp~~yalq~ 576 (604)
T KOG3863|consen 546 QQLSELYQEVFQQ---LRDEEGNPYSPSQYALQQ 576 (604)
T ss_pred HHHHHHHHHHHHH---HhccccCccCHHHHHHHh
Confidence 5554444322222 222224455555555544
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.65 E-value=6.9e+02 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
.+..|++.|..++.....||..+.+....+.+.++..+..........++++.=+..+.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888888888888888777766666655555565555444443
No 155
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.61 E-value=4.7e+02 Score=21.32 Aligned_cols=48 Identities=10% Similarity=0.304 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRD-------QLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~-------ql~~meeRl~~~E~kQqqm 210 (395)
.=++.+|.+-..+..|+..++.+...... +|+.+.+.+-.+|..+.+|
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888877777765544433 3334444444555444444
No 156
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=20.30 E-value=98 Score=32.24 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=26.4
Q ss_pred chHHHHHHhccCCCCC----CeeEEcCCCCeEEEecCchhh
Q 016091 48 PFLTKTYEMVEDLSTD----AIVSWSRTRNSFIVWDSHQFS 84 (395)
Q Consensus 48 ~Fl~KL~~ml~dp~~~----~iIsWs~~G~sFiI~d~~~F~ 84 (395)
-|..|-|.++..-.++ .-|.|+|||+...|||.-.=.
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley 202 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY 202 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence 3456678888654443 348999999999999875433
No 157
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=5.5e+02 Score=23.34 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=27.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~ 202 (395)
..+.-++.|++..+.|...+.+|.+....+-.++..++..++.
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888887777777776666655555555555444443
No 158
>PHA02047 phage lambda Rz1-like protein
Probab=20.12 E-value=4.8e+02 Score=22.41 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016091 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (395)
Q Consensus 178 El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~q 219 (395)
+..+|.++....+.++.+..+.+..++++..+--.=+..+++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555444433333344444
Done!