Query 016091
Match_columns 395
No_of_seqs 268 out of 1036
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 6.7E-40 2.3E-44 276.8 7.1 95 44-138 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 4.3E-39 1.5E-43 279.4 7.4 98 44-141 15-123 (125)
3 3hts_B Heat shock transcriptio 100.0 3.1E-33 1.1E-37 234.7 3.6 80 44-123 10-100 (102)
4 1gvj_A C-ETS-1 protein, P54; t 90.2 0.063 2.2E-06 47.3 0.4 84 38-121 31-119 (146)
5 1awc_A Protein (GA binding pro 89.8 0.13 4.6E-06 43.2 2.1 69 52-120 6-79 (110)
6 4avp_A ETS translocation varia 89.6 0.33 1.1E-05 40.6 4.3 76 45-120 10-90 (106)
7 1fli_A FLI-1; transcription/DN 89.1 0.22 7.6E-06 41.1 2.9 63 46-108 5-68 (98)
8 1bc8_C SAP-1, protein (SAP-1 E 88.0 0.24 8.2E-06 40.5 2.4 76 46-121 4-84 (93)
9 2ypr_A Protein FEV; transcript 87.8 0.29 9.9E-06 40.7 2.7 75 46-120 7-86 (102)
10 2nny_A C-ETS-1 protein, P54; p 87.5 0.14 4.6E-06 46.2 0.6 78 43-120 61-143 (171)
11 3jtg_A ETS-related transcripti 86.1 0.88 3E-05 37.8 4.8 73 48-120 6-85 (103)
12 2jee_A YIIU; FTSZ, septum, coi 84.8 5.9 0.0002 31.5 8.8 51 161-211 25-75 (81)
13 2dao_A Transcription factor ET 83.7 0.48 1.7E-05 40.3 2.2 76 45-120 7-88 (118)
14 1hbx_G ETS-domain protein ELK- 78.2 0.77 2.6E-05 40.8 1.6 76 46-121 5-85 (157)
15 1wwx_A E74-like factor 5 ESE-2 77.9 1.4 4.7E-05 36.9 3.0 75 45-120 7-88 (107)
16 2lf8_A Transcription factor ET 77.6 0.56 1.9E-05 40.4 0.0 56 52-107 10-67 (128)
17 1pue_E Protein (transcription 74.6 1.3 4.4E-05 35.9 1.8 69 51-120 6-83 (89)
18 3he5_B Synzip2; heterodimeric 72.6 10 0.00034 26.8 5.8 43 161-203 8-50 (52)
19 1yo5_C SAM pointed domain cont 72.3 1.6 5.3E-05 36.0 1.9 64 46-109 10-76 (97)
20 3tnu_B Keratin, type II cytosk 66.7 36 0.0012 28.5 9.4 54 161-214 34-87 (129)
21 1a93_B MAX protein, coiled coi 66.2 9 0.00031 25.7 4.2 29 168-196 5-33 (34)
22 3i00_A HIP-I, huntingtin-inter 65.9 31 0.0011 29.1 8.7 43 162-204 14-60 (120)
23 2yy0_A C-MYC-binding protein; 61.5 16 0.00055 26.6 5.3 31 162-192 18-48 (53)
24 4dzn_A Coiled-coil peptide CC- 60.5 11 0.00037 24.4 3.6 23 162-184 8-30 (33)
25 1wt6_A Myotonin-protein kinase 60.3 22 0.00076 28.2 6.2 44 160-207 18-61 (81)
26 3e98_A GAF domain of unknown f 59.9 21 0.00074 33.4 7.3 76 119-221 41-116 (252)
27 3tnu_A Keratin, type I cytoske 59.5 36 0.0012 28.7 8.0 54 161-214 36-89 (131)
28 2wt7_A Proto-oncogene protein 56.3 23 0.00078 26.3 5.5 29 161-189 28-56 (63)
29 2w83_C C-JUN-amino-terminal ki 55.1 15 0.00052 28.9 4.4 42 160-201 34-75 (77)
30 1deb_A APC protein, adenomatou 53.5 62 0.0021 23.5 8.2 39 165-203 5-43 (54)
31 1t2k_D Cyclic-AMP-dependent tr 53.0 24 0.00083 25.8 5.2 29 161-189 27-55 (61)
32 3hnw_A Uncharacterized protein 52.0 87 0.003 26.8 9.3 43 161-203 66-108 (138)
33 3hnw_A Uncharacterized protein 51.6 51 0.0017 28.3 7.7 51 160-210 72-122 (138)
34 2yy0_A C-MYC-binding protein; 51.4 29 0.00098 25.2 5.2 27 171-197 20-46 (53)
35 3q8t_A Beclin-1; autophagy, AT 49.7 87 0.003 25.1 8.4 49 160-208 8-56 (96)
36 2wt7_B Transcription factor MA 48.4 41 0.0014 27.1 6.2 39 163-201 48-86 (90)
37 4gkw_A Spindle assembly abnorm 43.4 1E+02 0.0035 26.7 8.1 29 165-193 48-76 (167)
38 4dzn_A Coiled-coil peptide CC- 42.7 46 0.0016 21.5 4.4 22 163-184 2-23 (33)
39 1wt6_A Myotonin-protein kinase 42.2 90 0.0031 24.7 7.1 22 189-210 36-57 (81)
40 4etp_A Kinesin-like protein KA 40.8 91 0.0031 31.1 8.8 41 165-205 5-45 (403)
41 3oja_B Anopheles plasmodium-re 37.2 76 0.0026 32.2 7.7 51 161-211 507-557 (597)
42 3cue_D Transport protein parti 37.1 21 0.00072 32.4 3.1 63 46-109 86-157 (193)
43 3na7_A HP0958; flagellar bioge 37.1 1.4E+02 0.0048 27.5 9.0 66 162-228 31-96 (256)
44 4emc_A Monopolin complex subun 37.1 1E+02 0.0034 28.1 7.5 54 175-228 25-78 (190)
45 1jnm_A Proto-oncogene C-JUN; B 36.6 24 0.00081 26.0 2.8 28 161-188 27-54 (62)
46 1c1g_A Tropomyosin; contractIl 36.6 1.4E+02 0.0049 25.7 8.6 21 164-184 14-34 (284)
47 2v66_B Nuclear distribution pr 36.4 1.9E+02 0.0063 24.1 9.3 43 172-214 37-79 (111)
48 1jcd_A Major outer membrane li 35.8 1.2E+02 0.0041 22.0 6.4 41 161-201 9-49 (52)
49 1g6u_A Domain swapped dimer; d 35.4 1.1E+02 0.0038 21.2 6.2 10 193-202 29-38 (48)
50 3m48_A General control protein 35.3 41 0.0014 22.3 3.4 24 161-184 5-28 (33)
51 1hjb_A Ccaat/enhancer binding 35.2 51 0.0017 26.3 4.7 9 180-188 46-54 (87)
52 3oja_B Anopheles plasmodium-re 35.1 1.7E+02 0.0059 29.5 10.0 23 160-182 467-489 (597)
53 1ci6_A Transcription factor AT 35.1 61 0.0021 24.0 4.9 24 162-185 29-52 (63)
54 1nkp_A C-MYC, MYC proto-oncoge 34.9 68 0.0023 25.3 5.5 31 165-195 54-84 (88)
55 4etp_A Kinesin-like protein KA 34.7 1E+02 0.0036 30.7 8.1 39 161-199 8-46 (403)
56 2jee_A YIIU; FTSZ, septum, coi 34.1 1.7E+02 0.0059 23.0 9.1 35 161-195 11-45 (81)
57 1deb_A APC protein, adenomatou 33.6 1.4E+02 0.0047 21.7 6.6 42 161-202 8-49 (54)
58 1nkp_B MAX protein, MYC proto- 33.6 46 0.0016 25.6 4.2 25 165-189 49-73 (83)
59 1kd8_B GABH BLL, GCN4 acid bas 33.1 82 0.0028 21.2 4.7 26 161-186 6-31 (36)
60 2xdj_A Uncharacterized protein 32.3 1.8E+02 0.0062 22.8 9.3 43 162-204 5-47 (83)
61 2dq0_A Seryl-tRNA synthetase; 31.0 1.3E+02 0.0045 30.4 8.3 51 160-210 42-95 (455)
62 2dgc_A Protein (GCN4); basic d 30.8 36 0.0012 25.4 3.0 25 161-185 35-59 (63)
63 3a7p_A Autophagy protein 16; c 30.6 2.8E+02 0.0094 24.3 10.2 21 163-183 68-88 (152)
64 3qne_A Seryl-tRNA synthetase, 30.3 1.4E+02 0.0047 30.8 8.3 52 160-211 44-98 (485)
65 3ra3_B P2F; coiled coil domain 29.6 46 0.0016 20.8 2.8 17 166-182 3-19 (28)
66 1sz7_A BET3 homolog, trafficki 29.6 40 0.0014 30.8 3.7 64 46-110 83-154 (200)
67 3bj4_A Potassium voltage-gated 29.5 95 0.0032 22.3 4.8 30 189-218 15-44 (49)
68 2v71_A Nuclear distribution pr 28.9 2.9E+02 0.01 24.9 9.3 31 174-204 92-122 (189)
69 3mq7_A Bone marrow stromal ant 28.5 85 0.0029 26.5 5.2 33 161-193 76-108 (121)
70 1lwu_C Fibrinogen gamma chain; 27.9 1.3E+02 0.0046 29.2 7.3 17 190-206 25-41 (323)
71 3a7p_A Autophagy protein 16; c 27.8 3.1E+02 0.011 24.0 9.1 28 181-208 100-127 (152)
72 4emc_A Monopolin complex subun 27.6 3.3E+02 0.011 24.7 9.3 45 160-204 24-68 (190)
73 1gd2_E Transcription factor PA 27.5 62 0.0021 24.8 3.9 28 161-188 34-61 (70)
74 1hjb_A Ccaat/enhancer binding 27.3 1.8E+02 0.0063 23.0 6.8 26 162-187 42-67 (87)
75 3c3g_A Alpha/beta peptide with 26.8 71 0.0024 21.2 3.4 24 161-184 5-28 (33)
76 3na7_A HP0958; flagellar bioge 26.6 2.7E+02 0.0092 25.5 9.0 12 325-336 207-218 (256)
77 3uux_B Mitochondrial division 26.4 3.4E+02 0.012 25.5 9.5 67 166-232 152-218 (242)
78 1wle_A Seryl-tRNA synthetase; 26.1 2.5E+02 0.0085 28.9 9.3 53 160-212 81-144 (501)
79 3kqg_A Langerin, C-type lectin 26.0 92 0.0031 26.3 5.3 15 161-175 4-18 (182)
80 3a2a_A Voltage-gated hydrogen 25.7 2E+02 0.0069 21.2 6.3 25 162-186 10-34 (58)
81 1uix_A RHO-associated kinase; 25.4 2.3E+02 0.0079 21.8 9.3 11 209-219 57-67 (71)
82 1kd8_A GABH AIV, GCN4 acid bas 25.3 1.3E+02 0.0046 20.2 4.7 26 161-186 6-31 (36)
83 4e61_A Protein BIM1; EB1-like 25.3 2.9E+02 0.0098 22.8 7.9 31 175-205 9-39 (106)
84 3c3f_A Alpha/beta peptide with 25.0 87 0.003 20.8 3.6 24 161-184 6-29 (34)
85 1nlw_A MAD protein, MAX dimeri 24.7 93 0.0032 24.1 4.5 25 165-189 49-73 (80)
86 3t97_C Nuclear pore glycoprote 24.2 36 0.0012 25.7 2.0 43 161-203 17-59 (64)
87 3u06_A Protein claret segregat 24.2 2E+02 0.0069 28.7 8.1 7 274-280 110-116 (412)
88 3q8t_A Beclin-1; autophagy, AT 24.0 2.7E+02 0.0094 22.1 8.1 26 161-186 23-48 (96)
89 2oxj_A Hybrid alpha/beta pepti 23.2 90 0.0031 20.8 3.4 24 161-184 6-29 (34)
90 2wq1_A General control protein 23.2 99 0.0034 20.4 3.6 24 161-184 5-28 (33)
91 1uo4_A General control protein 22.7 1E+02 0.0035 20.5 3.6 24 161-184 6-29 (34)
92 2bni_A General control protein 22.7 1E+02 0.0035 20.5 3.6 24 161-184 6-29 (34)
93 3u06_A Protein claret segregat 22.5 3E+02 0.01 27.5 9.0 11 190-200 30-40 (412)
94 3a2a_A Voltage-gated hydrogen 22.3 2.4E+02 0.0082 20.8 6.5 33 178-210 12-44 (58)
95 2zqm_A Prefoldin beta subunit 22.0 2.3E+02 0.0079 22.4 6.7 42 160-201 67-108 (117)
96 1ses_A Seryl-tRNA synthetase; 21.9 1.6E+02 0.0056 29.4 6.9 51 160-210 39-90 (421)
97 1lwu_C Fibrinogen gamma chain; 21.7 2.6E+02 0.0089 27.2 8.1 36 175-210 17-52 (323)
98 2aze_A Transcription factor DP 21.6 2.7E+02 0.0092 24.5 7.3 11 224-234 38-48 (155)
99 4ani_A Protein GRPE; chaperone 21.4 3.9E+02 0.013 24.5 8.8 62 163-232 59-120 (213)
100 1aq5_A Matrilin-1, CMP, cartil 21.4 1.8E+02 0.0062 20.7 5.0 24 177-200 23-46 (47)
101 2v71_A Nuclear distribution pr 20.6 4.7E+02 0.016 23.6 8.9 16 213-228 138-153 (189)
102 2xu6_A MDV1 coiled coil; prote 20.5 1.5E+02 0.005 23.0 4.7 23 164-186 29-51 (72)
103 3ra3_A P1C; coiled coil domain 20.5 88 0.003 19.5 2.8 19 167-185 4-22 (28)
104 2hy6_A General control protein 20.1 1.2E+02 0.0042 20.1 3.6 24 161-184 6-29 (34)
105 4e61_A Protein BIM1; EB1-like 20.1 3.7E+02 0.013 22.1 8.0 37 174-210 15-58 (106)
106 3s4r_A Vimentin; alpha-helix, 20.1 1.9E+02 0.0065 23.0 5.6 46 161-206 21-71 (93)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=6.7e-40 Score=276.75 Aligned_cols=95 Identities=41% Similarity=0.787 Sum_probs=91.4
Q ss_pred CCCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccC----------
Q 016091 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (395)
Q Consensus 44 ~~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~---------- 113 (395)
.++|+||.|||.||+||++++||+|+++|+||||+|+.+|++.|||+||||+||+||+||||+|||+|+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCceEecCCccccccccccccccc
Q 016091 114 PDRWEFANEGFLGGQKHLLKTIKRR 138 (395)
Q Consensus 114 ~~~~eF~h~~F~Rg~~~lL~~IkRk 138 (395)
++.|+|+||+|+||+++||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 5789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=279.37 Aligned_cols=98 Identities=52% Similarity=0.872 Sum_probs=93.7
Q ss_pred CCCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccC----------
Q 016091 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (395)
Q Consensus 44 ~~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~---------- 113 (395)
.++|+||.|||+||+||++++||+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||+|+.
T Consensus 15 ~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~ 94 (125)
T 2ldu_A 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKP 94 (125)
T ss_dssp CCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSC
T ss_pred CCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -CCCceEecCCcccccccccccccccccC
Q 016091 114 -PDRWEFANEGFLGGQKHLLKTIKRRRHV 141 (395)
Q Consensus 114 -~~~~eF~h~~F~Rg~~~lL~~IkRkk~~ 141 (395)
++.|+|+||+|+||+++||.+|+||++.
T Consensus 95 ~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 95 ERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred CCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=3.1e-33 Score=234.68 Aligned_cols=80 Identities=48% Similarity=0.907 Sum_probs=76.8
Q ss_pred CCCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccCCcCCCChhhHHhhhcccCccccC----------
Q 016091 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (395)
Q Consensus 44 ~~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~~Fkh~nfsSFvRQLN~YGFrKv~---------- 113 (395)
..+|+||.|||.||+||++++||+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||+|+.
T Consensus 10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~ 89 (102)
T 3hts_B 10 MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSN 89 (102)
T ss_dssp CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------C
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCceEecCC
Q 016091 114 -PDRWEFANEG 123 (395)
Q Consensus 114 -~~~~eF~h~~ 123 (395)
+++|||+|++
T Consensus 90 ~~~~wEF~n~~ 100 (102)
T 3hts_B 90 NDSRWEFENER 100 (102)
T ss_dssp CSCCEEEEECC
T ss_pred CcCCeEecCCC
Confidence 6899999986
No 4
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=90.20 E-value=0.063 Score=47.30 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=60.9
Q ss_pred ccCCCCCCCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----ccc
Q 016091 38 LEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKV 112 (395)
Q Consensus 38 ~~g~~~~~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv 112 (395)
+.|....++.....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-= +|+
T Consensus 31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv 110 (146)
T 1gvj_A 31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110 (146)
T ss_dssp HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence 3343345677788888999999999999999999999999999988864211 11134578888899888754 355
Q ss_pred CCCCceEec
Q 016091 113 DPDRWEFAN 121 (395)
Q Consensus 113 ~~~~~eF~h 121 (395)
...+..|..
T Consensus 111 ~GkrlvY~F 119 (146)
T 1gvj_A 111 AGKRYVYRF 119 (146)
T ss_dssp TTSSSEEEE
T ss_pred CCCeEEEEe
Confidence 555666653
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=89.81 E-value=0.13 Score=43.24 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=49.1
Q ss_pred HHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhccC-CcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 52 KTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPK-YFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 52 KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP~-~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
=|.++|.||++.++|+|...+.-|.+.||++.++.-=.+ -=..-||...-|-|..|.= +|+...+..|.
T Consensus 6 FLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 367889999999999999998999999998887642211 1124578888888887743 33444445554
No 6
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=89.58 E-value=0.33 Score=40.64 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=55.7
Q ss_pred CCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccC---c-cccCCCCceE
Q 016091 45 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG---F-RKVDPDRWEF 119 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG---F-rKv~~~~~eF 119 (395)
|.-....=|.++|+|+++.++|+|...+..|.+.|+++.++.-=. +-=..-||..+.|-|..|- . +||...+..|
T Consensus 10 g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY 89 (106)
T 4avp_A 10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 89 (106)
T ss_dssp -CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred CcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence 344556668889999999999999998889999999888864211 1123568999999998873 3 5666666666
Q ss_pred e
Q 016091 120 A 120 (395)
Q Consensus 120 ~ 120 (395)
.
T Consensus 90 k 90 (106)
T 4avp_A 90 K 90 (106)
T ss_dssp E
T ss_pred E
Confidence 4
No 7
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=89.12 E-value=0.22 Score=41.11 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccC
Q 016091 46 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YG 108 (395)
+.....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-
T Consensus 5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 34455567788899999999999998889999999888763211 1113457888888887774
No 8
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=88.02 E-value=0.24 Score=40.53 Aligned_cols=76 Identities=12% Similarity=0.266 Sum_probs=55.3
Q ss_pred CCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 46 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
+.....=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-= +|+...+..|.
T Consensus 4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~ 83 (93)
T 1bc8_C 4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 83 (93)
T ss_dssp CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 44555668899999999999999988889999999888864211 11245689999999988742 45555566665
Q ss_pred c
Q 016091 121 N 121 (395)
Q Consensus 121 h 121 (395)
.
T Consensus 84 F 84 (93)
T 1bc8_C 84 F 84 (93)
T ss_dssp E
T ss_pred e
Confidence 3
No 9
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=87.75 E-value=0.29 Score=40.68 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 46 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
.-....=|.++|+|+++.++|+|...+.-|.+.||++.++.-=. +-=..-||..+-|-|..|-= +||...+..|.
T Consensus 7 ~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk 86 (102)
T 2ypr_A 7 QIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR 86 (102)
T ss_dssp SCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred cEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 34455667789999999999999988899999999888863111 11135689999998888742 45555555554
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=87.51 E-value=0.14 Score=46.25 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=57.0
Q ss_pred CCCCCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCcc----ccCCCCc
Q 016091 43 DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRW 117 (395)
Q Consensus 43 ~~~~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGFr----Kv~~~~~ 117 (395)
..++.....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-=+ |+...+.
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 140 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 140 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence 34566777778899999999999999999999999999988864211 111245788888888887543 4555555
Q ss_pred eEe
Q 016091 118 EFA 120 (395)
Q Consensus 118 eF~ 120 (395)
.|.
T Consensus 141 vY~ 143 (171)
T 2nny_A 141 VYR 143 (171)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 11
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=86.07 E-value=0.88 Score=37.80 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=50.0
Q ss_pred chHHHHHHhccCCC-CCCeeEEcCC-CCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 48 PFLTKTYEMVEDLS-TDAIVSWSRT-RNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 48 ~Fl~KL~~ml~dp~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
....=|.++|.||+ ..++|+|... ..-|.+.||++.++.-=. +-=..-||..+-|-|..|-= +||...+..|.
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 34455778899998 5689999974 458999999888864111 11145689999999988732 45555555553
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.77 E-value=5.9 Score=31.50 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm 211 (395)
|..|++.||.++..|..|...++........+...+.+.+..-..+...|+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887777555444444445555554444444444443
No 13
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.70 E-value=0.48 Score=40.31 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=54.8
Q ss_pred CCCchHHHHHHhccCCCCCCeeEEcC-CCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhccc---Cc-cccCCCCce
Q 016091 45 GPPPFLTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY---GF-RKVDPDRWE 118 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~Y---GF-rKv~~~~~e 118 (395)
+....-.=|.++|.||++.++|+|.. ++.-|.+.||++.++.-=. +.=..-||...-|-|..| |. +|+...+..
T Consensus 7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v 86 (118)
T 2dao_A 7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL 86 (118)
T ss_dssp CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence 34556677889999999999999987 4568999999887764211 222346899999999888 33 556556656
Q ss_pred Ee
Q 016091 119 FA 120 (395)
Q Consensus 119 F~ 120 (395)
|.
T Consensus 87 Y~ 88 (118)
T 2dao_A 87 FR 88 (118)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=78.21 E-value=0.77 Score=40.79 Aligned_cols=76 Identities=12% Similarity=0.266 Sum_probs=54.9
Q ss_pred CCchHHHHHHhccCCCCCCeeEEcCCCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 46 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~~~~iIsWs~~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
+-....=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-= +|+...+..|.
T Consensus 5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYk 84 (157)
T 1hbx_G 5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 84 (157)
T ss_dssp CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEe
Confidence 34455567788999999999999988889999999888864221 11234688999999988742 45555566665
Q ss_pred c
Q 016091 121 N 121 (395)
Q Consensus 121 h 121 (395)
.
T Consensus 85 F 85 (157)
T 1hbx_G 85 F 85 (157)
T ss_dssp E
T ss_pred e
Confidence 4
No 15
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=77.95 E-value=1.4 Score=36.91 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=52.0
Q ss_pred CCCchHHHHHHhccCCC-CCCeeEEcC-CCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc----cccCCCCc
Q 016091 45 GPPPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRW 117 (395)
Q Consensus 45 ~~~~Fl~KL~~ml~dp~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF----rKv~~~~~ 117 (395)
++.....=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.-=. +-=..-||...-|-|..|.= +||+ .+.
T Consensus 7 g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~-~rl 85 (107)
T 1wwx_A 7 GSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRL 85 (107)
T ss_dssp SSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-SSS
T ss_pred CcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-ceE
Confidence 44566777889999986 568999987 4678999999888864111 11134688899998888742 4554 555
Q ss_pred eEe
Q 016091 118 EFA 120 (395)
Q Consensus 118 eF~ 120 (395)
.|.
T Consensus 86 vY~ 88 (107)
T 1wwx_A 86 VYK 88 (107)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 16
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=77.62 E-value=0.56 Score=40.43 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=36.5
Q ss_pred HHHHhccCCCCCCeeEEcCCC-CeEEEecCchhhhhhcc-CCcCCCChhhHHhhhccc
Q 016091 52 KTYEMVEDLSTDAIVSWSRTR-NSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (395)
Q Consensus 52 KL~~ml~dp~~~~iIsWs~~G-~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~Y 107 (395)
=|.++|.|+++.++|+|...+ .-|.+.|+++.++.-=. +.=..-||...-|-|..|
T Consensus 10 FLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 10 YVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 467789999999999998754 58999999876652111 000123455555555555
No 17
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=74.58 E-value=1.3 Score=35.92 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=45.9
Q ss_pred HHHHHhccCCCCCCeeEEcCCC-CeEEEe--cCchhhhhhccC--CcCCCChhhHHhhhcccCc----cccCCCCceEe
Q 016091 51 TKTYEMVEDLSTDAIVSWSRTR-NSFIVW--DSHQFSTTLLPK--YFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (395)
Q Consensus 51 ~KL~~ml~dp~~~~iIsWs~~G-~sFiI~--d~~~F~~~vLP~--~Fkh~nfsSFvRQLN~YGF----rKv~~~~~eF~ 120 (395)
.=|.++|.||++.++|+|...+ .-|-+. |+++.++.-=.+ .=..-||...-|-|..|.= +||. .+..|.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 3467889999999999998643 568775 677777632111 1225688899998888742 4454 455553
No 18
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.62 E-value=10 Score=26.83 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
+...|.+||+|+-.|...-..|..-..+++.++..++..+...
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556777777777666666666655555566666666555443
No 19
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=72.28 E-value=1.6 Score=35.97 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=47.3
Q ss_pred CCchHHHHHHhccCCC-CCCeeEEcC-CCCeEEEecCchhhhhhcc-CCcCCCChhhHHhhhcccCc
Q 016091 46 PPPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF 109 (395)
Q Consensus 46 ~~~Fl~KL~~ml~dp~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLP-~~Fkh~nfsSFvRQLN~YGF 109 (395)
+.....=|.++|.||+ ..++|+|.. ++.-|.+.|+++.++.-=. +-=..-||...-|-|..|--
T Consensus 10 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~ 76 (97)
T 1yo5_C 10 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYK 76 (97)
T ss_dssp CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTT
T ss_pred eeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 4456667889999986 578999985 5779999999888864211 12235689999999988854
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.69 E-value=36 Score=28.50 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FL 214 (395)
...||..|++..+.|..||..++.+...+...+..++.+....-..-+..+.-|
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~l 87 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAEL 87 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988888888888888877654433333333333
No 21
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.20 E-value=9 Score=25.68 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (395)
Q Consensus 168 LKrd~~~L~~El~kLrQqqq~~~~ql~~m 196 (395)
+++..++..++|..|+.|...+..|+..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45666677777777776665555544433
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.90 E-value=31 Score=29.12 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQS----RDQLSAMEDRLLSTE 204 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~----~~ql~~meeRl~~~E 204 (395)
+..|+.|+++...|..|+.+++.+.+.. +.++..|+..|....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998876543 444555666555433
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.51 E-value=16 Score=26.55 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~q 192 (395)
..+++.||.+++.|..++..|+++...++.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777766666666665555443
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.51 E-value=11 Score=24.43 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
..||..||++..+|.-|+..|+|
T Consensus 8 kqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444
No 25
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.29 E-value=22 Score=28.17 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQ 207 (395)
.|+.|| +-++.|..||.+.|-.+..+..+|+..+.|.+.++...
T Consensus 18 ALeaEI----qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~ 61 (81)
T 1wt6_A 18 ALEEEV----LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHV 61 (81)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665 56778888888888777777776666666665554443
No 26
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=59.89 E-value=21 Score=33.40 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred EecCCcccccccccccccccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 119 FANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (395)
Q Consensus 119 F~h~~F~Rg~~~lL~~IkRkk~~s~~~~q~~~g~~~E~~~~~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~mee 198 (395)
=.||.|.-.+++||..++=..+. + ++ + +| ....+..||++...++.++..|.+
T Consensus 41 ~~~PdFf~~~~~Ll~~L~lph~~-------~-~a-V-----SL-------------~erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 41 SQHPEFFVEHDELIPELRIPHQP-------G-DA-V-----SL-------------VERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp -----------------------------------C-----HH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHhhCHHHHHhCCCCCCC-------C-Cc-c-----cH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999888653222 1 11 1 11 112255667777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 016091 199 RLLSTEKKQQQMMTFLAKALKNP 221 (395)
Q Consensus 199 Rl~~~E~kQqqmm~FLak~~qnp 221 (395)
.-+..+....++..+..+++.-.
T Consensus 94 ~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 94 VARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888877777644
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.50 E-value=36 Score=28.67 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FL 214 (395)
...||..|++..+.|..||..++.+...+...+..++.+....-..-+..+.-|
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l 89 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV 89 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888899999888888777777777777777654433333333333
No 28
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.26 E-value=23 Score=26.28 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQS 189 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~ 189 (395)
|..+++.|..++..|..+|..|+.+...+
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666554433
No 29
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.05 E-value=15 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
.|...++.|-.++.+|..|+..+++-...+..++..||+.++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777766665555555555543
No 30
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.53 E-value=62 Score=23.51 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
.++|-++.+.|..|...||++.++--.++..+|..--.|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 456667777777777888887777777777766654443
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.04 E-value=24 Score=25.83 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQS 189 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~ 189 (395)
|+.+++.|..++..|..+|..|+.+...+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666655443
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.98 E-value=87 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
+-.++-.++++...|..++..+..+.+.++.++.....++...
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.59 E-value=51 Score=28.29 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+..+++.|..+...+..|+..|+++......++..+...+.....+.+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665555555555555544444444333
No 34
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.37 E-value=29 Score=25.20 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 171 DRNVLMAEIVRLRQHQQQSRDQLSAME 197 (395)
Q Consensus 171 d~~~L~~El~kLrQqqq~~~~ql~~me 197 (395)
|..+|..|+..|+++...+..++..+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.70 E-value=87 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQq 208 (395)
.+..++..|+.+-..|..||..|..+...+..+|..++.........-.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~ 56 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEA 56 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3678888999999999999999999988888888888887776655433
No 36
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=48.40 E-value=41 Score=27.11 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
.+...|..++..|+.|+..|+++...+..++..+..++.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777666666666666654
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=43.40 E-value=1e+02 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQL 193 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql 193 (395)
+++|++-+.+-+.||.+||-+...+...+
T Consensus 48 VDQlqKRn~~HQKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 48 VDQLQKRNVAHQKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHhH
Confidence 44444444444455555544444333333
No 38
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.65 E-value=46 Score=21.49 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQ 184 (395)
+||..||++..+|..|+..|+=
T Consensus 2 geiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665543
No 39
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.15 E-value=90 Score=24.69 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016091 189 SRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 189 ~~~ql~~meeRl~~~E~kQqqm 210 (395)
++.-..+++.+|+..+.+.+.+
T Consensus 36 vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 36 IRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555444444
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.84 E-value=91 Score=31.08 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
++.|+.+...|.+++..|.+....+..++..+.+++...+.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555556666666554443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.19 E-value=76 Score=32.21 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm 211 (395)
+..++..++.+.+.+..++.+++++.+....+++.++++...+|++.+.+-
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhh
Confidence 445566666666666666666666655555555555555555554444443
No 42
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=37.11 E-value=21 Score=32.41 Aligned_cols=63 Identities=19% Similarity=0.442 Sum_probs=47.7
Q ss_pred CCchHHH-HHHhccCCCCCCeeEEcCCCCeEEE-ecCchhhhhh-ccCCc-CCCChhhHHhh-----hcccCc
Q 016091 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYF-KHSNFSSFIRQ-----LNTYGF 109 (395)
Q Consensus 46 ~~~Fl~K-L~~ml~dp~~~~iIsWs~~G~sFiI-~d~~~F~~~v-LP~~F-kh~nfsSFvRQ-----LN~YGF 109 (395)
...|+.| +|.++=.-..+ ...|+++++.|+| .|..-|..-| +|... ..-+|+.|+.= |.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~d-~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCC-CBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCc-cceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 4578854 88888665444 6789999999999 7776655554 78777 67799999754 788899
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.08 E-value=1.4e+02 Score=27.50 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLv 228 (395)
..++..|..+...|...+..++.....+..++..++..+.....+....-.-|.. .+|+.=+..|-
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~-v~~~kE~~aL~ 96 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRSLN 96 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444333332 34554343333
No 44
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.08 E-value=1e+02 Score=28.08 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLv 228 (395)
|..|+..|.++...-..++.+|+++++..+..-...-.-+++...+-+++.-|.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 333444444444443444444444444444333333333344444434444444
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.62 E-value=24 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQ 188 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~ 188 (395)
|+.+++.|..++..|..+|..|+.+...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655443
No 46
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=36.61 E-value=1.4e+02 Score=25.68 Aligned_cols=21 Identities=10% Similarity=-0.031 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQ 184 (395)
+++.+......|..++..++.
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~~ 34 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAED 34 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.39 E-value=1.9e+02 Score=24.09 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (395)
Q Consensus 172 ~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FL 214 (395)
...|..||..|+.....+..++..||......|..--....-|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 4457778888888888888888888888777776554443333
No 48
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.75 E-value=1.2e+02 Score=21.97 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
|..++..|..+...|..++..|+...+..+.+-.+-.+||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666777777777666666666666566654
No 49
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.43 E-value=1.1e+02 Score=21.19 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016091 193 LSAMEDRLLS 202 (395)
Q Consensus 193 l~~meeRl~~ 202 (395)
+++++.++..
T Consensus 29 lqalekklaa 38 (48)
T 1g6u_A 29 LQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 50
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.35 E-value=41 Score=22.30 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|+..++.|-..+..|..|+.+|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678888888888888888888874
No 51
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.25 E-value=51 Score=26.31 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016091 180 VRLRQHQQQ 188 (395)
Q Consensus 180 ~kLrQqqq~ 188 (395)
..|.++...
T Consensus 46 ~~Le~EN~~ 54 (87)
T 1hjb_A 46 LELTAENER 54 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.13 E-value=1.7e+02 Score=29.51 Aligned_cols=23 Identities=26% Similarity=0.047 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRL 182 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kL 182 (395)
.+..++.+..+..+.+..++...
T Consensus 467 ~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555555555555555555433
No 53
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.06 E-value=61 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
..+++.|+.++..|..+|..|+.+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 54
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.93 E-value=68 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~~~ql~~ 195 (395)
|..|+.....+..++..|+++++.+..+|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655555444443
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.69 E-value=1e+02 Score=30.65 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDR 199 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeR 199 (395)
+..++..|+++...|..++..++.+...+..++...+..
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555544443333
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.13 E-value=1.7e+02 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~ 195 (395)
|+..|.++=.....|..|+..|+++...+..+...
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555666666665555544444
No 57
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.58 E-value=1.4e+02 Score=21.71 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~ 202 (395)
|-.+++.||+++..|.+|+..--.+...++++-..|.+-+..
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 456788899999999999888888777777777777766543
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.56 E-value=46 Score=25.63 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQS 189 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~ 189 (395)
|..|+...+.|..|+..|++++..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.05 E-value=82 Score=21.22 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
|+..++.|...+..|..|+.+|+.-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 67788888888888888888887643
No 60
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.32 E-value=1.8e+02 Score=22.78 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
+..+.+|.+-..+...-+..|.++...+..++..|...+....
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444443222223333444444444444444444443333
No 61
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.00 E-value=1.3e+02 Score=30.41 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq---qq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+..+++.|+.+++.+..+|.+++.. ...+..+++.+.+++..++.....+
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEEL 95 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888765422 2234444555555555555444443
No 62
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.76 E-value=36 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQq 185 (395)
|+.+++.|+.++..|..|+..|+++
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666654
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.65 E-value=2.8e+02 Score=24.34 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016091 163 GELERLKRDRNVLMAEIVRLR 183 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLr 183 (395)
..|..|+.+...|..+|..|.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 64
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.35 E-value=1.4e+02 Score=30.80 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMM 211 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq---qq~~~~ql~~meeRl~~~E~kQqqmm 211 (395)
.+..+++.|+.+++.+..+|..++.. ...+..+++.+.+++..++....++-
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888766542 12344555556666655555554443
No 65
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.63 E-value=46 Score=20.77 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016091 166 ERLKRDRNVLMAEIVRL 182 (395)
Q Consensus 166 e~LKrd~~~L~~El~kL 182 (395)
.+||+.+..|.+||..|
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 34555544444444433
No 66
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=29.62 E-value=40 Score=30.83 Aligned_cols=64 Identities=16% Similarity=0.375 Sum_probs=46.8
Q ss_pred CCchHHH-HHHhccCCCCCCeeEEcCCCCeEEE-ecCchhhhhh-ccCCcCCCChhhHHhh-----hcccCcc
Q 016091 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYFKHSNFSSFIRQ-----LNTYGFR 110 (395)
Q Consensus 46 ~~~Fl~K-L~~ml~dp~~~~iIsWs~~G~sFiI-~d~~~F~~~v-LP~~Fkh~nfsSFvRQ-----LN~YGFr 110 (395)
...||.| +|.++=.-.. +...|+++++.|+| .|..-+..-| ||.-.+.-+|+.|+.= |.+-||.
T Consensus 83 ~l~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 83 TADVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 3567744 8888755434 47889999999999 7776555433 6876677789999754 7788887
No 67
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=29.47 E-value=95 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016091 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKAL 218 (395)
Q Consensus 189 ~~~ql~~meeRl~~~E~kQqqmm~FLak~~ 218 (395)
+-.++..+|+++..+++|-.+|+..+..++
T Consensus 15 ~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 15 IGARLNRVEDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888787777666544
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.94 E-value=2.9e+02 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 174 ~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
.|..||..|+.....+..++..+|.....+|
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444444444444444444444444444
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.50 E-value=85 Score=26.51 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 193 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql 193 (395)
|.+||..|++..+....|+.+||.+.+.+..++
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.86 E-value=1.3e+02 Score=29.25 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016091 190 RDQLSAMEDRLLSTEKK 206 (395)
Q Consensus 190 ~~ql~~meeRl~~~E~k 206 (395)
..+++.|+..+..++.+
T Consensus 25 ~~~i~~L~~~l~~~~~~ 41 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQF 41 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.81 E-value=3.1e+02 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 181 RLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (395)
Q Consensus 181 kLrQqqq~~~~ql~~meeRl~~~E~kQq 208 (395)
.|+.++..+..++..++++++.++...+
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555444333
No 72
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.57 E-value=3.3e+02 Score=24.66 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E 204 (395)
.|..|...|..+.+....|+..|+.+.+..++++.....++....
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~ 68 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQA 68 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 356667777777777777777777777777777766666665333
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.49 E-value=62 Score=24.76 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQ 188 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~ 188 (395)
|+.++..|......|..|+..|+.+...
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 74
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.32 E-value=1.8e+02 Score=23.00 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQQ 187 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqqq 187 (395)
..+++.|..++..|..+|..|+.+..
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.84 E-value=71 Score=21.15 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|++.++.|=..+..|..|+.+|+.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567778888888888888888764
No 76
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.60 E-value=2.7e+02 Score=25.53 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=8.2
Q ss_pred CcchHHHHHHHh
Q 016091 325 SVNETIWEDFMA 336 (395)
Q Consensus 325 ~~~d~~wEell~ 336 (395)
.++...+-++..
T Consensus 207 ~lppq~~~~i~~ 218 (256)
T 3na7_A 207 RLNDKIYTEVLT 218 (256)
T ss_dssp BCCHHHHHHHHH
T ss_pred eeCHHHHHHHHC
Confidence 566677777765
No 77
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=26.43 E-value=3.4e+02 Score=25.47 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 166 ERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 166 e~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
..|++..+.+..++..|-=+..-+..++..+..+++.+....+.++.-||.+=++-.||..-+..-+
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4577777777777766655555566778888888888888888888888888887777776655444
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.12 E-value=2.5e+02 Score=28.90 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQH-----------QQQSRDQLSAMEDRLLSTEKKQQQMMT 212 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQq-----------qq~~~~ql~~meeRl~~~E~kQqqmm~ 212 (395)
.+..+++.|+.+++.+.++|..++.. ...+..+++.+.+++..++....++-.
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888776532 224455666666666666655554433
No 79
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.97 E-value=92 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=3.6
Q ss_pred chHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVL 175 (395)
Q Consensus 161 l~~Eie~LKrd~~~L 175 (395)
|..+++.||++.+.+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 566777777776644
No 80
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=25.65 E-value=2e+02 Score=21.16 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 162 DGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 162 ~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
+.++.+||.-+..|...|..|+.+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c 34 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSC 34 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665444
No 81
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.38 E-value=2.3e+02 Score=21.76 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.6
Q ss_pred HHHHHHHHHhc
Q 016091 209 QMMTFLAKALK 219 (395)
Q Consensus 209 qmm~FLak~~q 219 (395)
|-++-||-+|.
T Consensus 57 QAVNKLAEIMN 67 (71)
T 1uix_A 57 QAVNKLAEIMN 67 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34455555553
No 82
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.33 E-value=1.3e+02 Score=20.18 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
|+..++.|-..+..|..|+.+|+.-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 67788888888888888888887643
No 83
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.31 E-value=2.9e+02 Score=22.81 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeRl~~~E~ 205 (395)
|.+|+...+++...+..++..+...+..+|+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 84
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.99 E-value=87 Score=20.84 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|++.++.|=..+..|..|+.+|+.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 667778887888888888888764
No 85
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.73 E-value=93 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 165 LERLKRDRNVLMAEIVRLRQHQQQS 189 (395)
Q Consensus 165 ie~LKrd~~~L~~El~kLrQqqq~~ 189 (395)
|..|+.....|..|+..|+.++..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444433
No 86
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.25 E-value=36 Score=25.68 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~ 203 (395)
|..++.+.+++++.|-++|..+..||..+..-|..+|+.+..+
T Consensus 17 L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~ 59 (64)
T 3t97_C 17 LHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.16 E-value=2e+02 Score=28.70 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=4.0
Q ss_pred ccccccc
Q 016091 274 VDYTVQD 280 (395)
Q Consensus 274 ~~~~~~~ 280 (395)
+|+.|.+
T Consensus 110 FD~VF~~ 116 (412)
T 3u06_A 110 FDQVFHP 116 (412)
T ss_dssp CSEEECT
T ss_pred eCeEcCC
Confidence 5666654
No 88
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.02 E-value=2.7e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=15.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqq 186 (395)
+..++..|.++...|-.||..++.+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666666666666666665543
No 89
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.21 E-value=90 Score=20.78 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|+..++.|=..+..|..|+.+||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 667778887888888888887764
No 90
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.15 E-value=99 Score=20.45 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|++.++.|=..+..|..|+.+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777777778888888887764
No 91
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.66 E-value=1e+02 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
+++.++.|=..+..|..|+.+|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677778887788888888887764
No 92
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.66 E-value=1e+02 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
+++.++.|=..+..|..|+.+|+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 677788888888888888888874
No 93
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.53 E-value=3e+02 Score=27.46 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 016091 190 RDQLSAMEDRL 200 (395)
Q Consensus 190 ~~ql~~meeRl 200 (395)
..++..+++++
T Consensus 30 ~~~~~~~~~~l 40 (412)
T 3u06_A 30 AAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 94
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.25 E-value=2.4e+02 Score=20.78 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 178 El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+.+|+|....+-.+++.++.....+|+.+..+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888887777666554
No 95
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.00 E-value=2.3e+02 Score=22.37 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~ 201 (395)
..+.-+..|......|..+|..|..+...+..++..++..|.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777776666666555555555543
No 96
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.86 E-value=1.6e+02 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=24.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 160 GLDGELERLKRDRNVLMAEIVR-LRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 160 ~l~~Eie~LKrd~~~L~~El~k-LrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
.+..+++.|+.+++.+.++|.. -.+....+..+++.+.+++..++....++
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777766666542 01112233344444444444444444333
No 97
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.71 E-value=2.6e+02 Score=27.20 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (395)
Q Consensus 175 L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqm 210 (395)
|..-|.....+.+.++..+..++.+++.++++..++
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555666666666554444433
No 98
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.63 E-value=2.7e+02 Score=24.47 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=7.3
Q ss_pred HHHHHHhHHHh
Q 016091 224 FQQLAQSNAHR 234 (395)
Q Consensus 224 i~qLvq~~e~~ 234 (395)
++.|++++...
T Consensus 38 fknLv~RN~~~ 48 (155)
T 2aze_A 38 FKNLVQRNRHA 48 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56788877643
No 99
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.42 E-value=3.9e+02 Score=24.46 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhHH
Q 016091 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNA 232 (395)
Q Consensus 163 ~Eie~LKrd~~~L~~El~kLrQqqq~~~~ql~~meeRl~~~E~kQqqmm~FLak~~qnp~Fi~qLvq~~e 232 (395)
.+++.|+.....|..++..++.+...+.+.+.++..|... ....+ +.+..-.|+..|+.=.+
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r---E~e~~-----~~~a~e~~~~~LLpVlD 120 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ---EMEAA-----EKYRAQSLASDLLPVLD 120 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHhHHHH
Confidence 5567788888888888888888887777888887777642 22222 22233356666665544
No 100
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=21.41 E-value=1.8e+02 Score=20.69 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016091 177 AEIVRLRQHQQQSRDQLSAMEDRL 200 (395)
Q Consensus 177 ~El~kLrQqqq~~~~ql~~meeRl 200 (395)
..|..|.|+...+-.+|.+||.|+
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566665555555555555443
No 101
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.63 E-value=4.7e+02 Score=23.56 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=6.3
Q ss_pred HHHHHhcCchHHHHHH
Q 016091 213 FLAKALKNPSFFQQLA 228 (395)
Q Consensus 213 FLak~~qnp~Fi~qLv 228 (395)
.|-.++-...|+..=+
T Consensus 138 kln~aiEr~alLE~El 153 (189)
T 2v71_A 138 RLNQAIERNAFLESEL 153 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334443333444333
No 102
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=20.54 E-value=1.5e+02 Score=22.98 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016091 164 ELERLKRDRNVLMAEIVRLRQHQ 186 (395)
Q Consensus 164 Eie~LKrd~~~L~~El~kLrQqq 186 (395)
.|++|+.-++.+..=|+.|.|..
T Consensus 29 Ki~nL~~mR~ivldRlA~lEqdE 51 (72)
T 2xu6_A 29 EVENLRQKKEKLLGKIANIEQNQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333333333333333333
No 103
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.50 E-value=88 Score=19.49 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016091 167 RLKRDRNVLMAEIVRLRQH 185 (395)
Q Consensus 167 ~LKrd~~~L~~El~kLrQq 185 (395)
.|.-++.+|.+.|..|+|.
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 3444555555555555554
No 104
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.15 E-value=1.2e+02 Score=20.12 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQ 184 (395)
|++.++.|-..+..|..|+.+|+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677788888888888888888864
No 105
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.09 E-value=3.7e+02 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 016091 174 VLMAEIVRLRQHQQQSRDQLSAMED-------RLLSTEKKQQQM 210 (395)
Q Consensus 174 ~L~~El~kLrQqqq~~~~ql~~mee-------Rl~~~E~kQqqm 210 (395)
....++..|.++...++..+..|+. +|+.+|--+|.+
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555543 345555444443
No 106
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.08 E-value=1.9e+02 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 016091 161 LDGELERLKRDRNVLMAEIVRLRQHQQQ-----SRDQLSAMEDRLLSTEKK 206 (395)
Q Consensus 161 l~~Eie~LKrd~~~L~~El~kLrQqqq~-----~~~ql~~meeRl~~~E~k 206 (395)
+.+.+..|..++..|..++..++++... ...+|..+...+..+...
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666554211 134444555555444433
Done!