Query 016092
Match_columns 395
No_of_seqs 336 out of 1462
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 2E-65 4.3E-70 463.5 24.5 318 75-394 21-346 (472)
2 KOG0960 Mitochondrial processi 100.0 1.3E-51 2.8E-56 373.2 27.3 311 77-393 32-349 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 2.1E-45 4.5E-50 362.9 31.8 305 77-394 15-328 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 6.2E-44 1.3E-48 360.9 37.5 293 81-391 2-305 (696)
5 PRK15101 protease3; Provisiona 100.0 1.4E-38 3E-43 342.7 33.2 304 76-393 41-359 (961)
6 KOG2583 Ubiquinol cytochrome c 100.0 4.6E-31 1E-35 240.6 29.3 302 78-392 22-325 (429)
7 PTZ00432 falcilysin; Provision 100.0 2.9E-31 6.2E-36 284.6 30.1 297 78-390 91-451 (1119)
8 COG1025 Ptr Secreted/periplasm 100.0 3E-29 6.5E-34 252.6 28.8 299 76-389 21-334 (937)
9 KOG0959 N-arginine dibasic con 100.0 8.3E-28 1.8E-32 246.2 30.2 300 76-390 25-340 (974)
10 PRK15101 protease3; Provisiona 99.9 1.3E-24 2.8E-29 234.5 27.7 290 78-392 522-821 (961)
11 PF00675 Peptidase_M16: Insuli 99.9 6.9E-24 1.5E-28 178.4 15.9 146 89-234 1-148 (149)
12 COG1026 Predicted Zn-dependent 99.8 3.4E-19 7.4E-24 181.1 23.4 296 79-391 22-346 (978)
13 KOG2019 Metalloendoprotease HM 99.8 2.5E-17 5.4E-22 159.7 23.9 304 69-394 552-888 (998)
14 COG1026 Predicted Zn-dependent 99.8 4.5E-17 9.7E-22 165.8 23.7 311 60-394 510-858 (978)
15 PTZ00432 falcilysin; Provision 99.7 2.2E-16 4.8E-21 170.3 23.3 287 84-394 665-1002(1119)
16 PF05193 Peptidase_M16_C: Pept 99.7 3.4E-17 7.3E-22 141.6 13.7 141 240-394 1-151 (184)
17 KOG2019 Metalloendoprotease HM 99.7 3.1E-16 6.8E-21 152.2 18.1 292 83-391 58-382 (998)
18 KOG0961 Predicted Zn2+-depende 99.6 1.7E-14 3.6E-19 140.1 18.2 274 86-375 28-330 (1022)
19 COG1025 Ptr Secreted/periplasm 99.4 4.6E-11 9.9E-16 122.1 25.4 282 86-392 509-801 (937)
20 KOG0959 N-arginine dibasic con 99.2 1.3E-08 2.8E-13 106.0 26.5 300 55-379 482-804 (974)
21 PF08367 M16C_assoc: Peptidase 98.9 3.3E-08 7.1E-13 90.0 13.0 127 61-191 54-193 (248)
22 KOG0961 Predicted Zn2+-depende 98.5 2.1E-06 4.6E-11 84.8 12.4 283 93-393 556-879 (1022)
23 PF03410 Peptidase_M44: Protei 98.1 0.00016 3.4E-09 69.1 16.0 185 82-287 2-194 (590)
24 PHA03081 putative metalloprote 97.9 0.00051 1.1E-08 65.8 15.5 184 82-287 2-194 (595)
25 KOG0960 Mitochondrial processi 96.3 0.096 2.1E-06 49.6 12.9 177 87-267 258-450 (467)
26 KOG2067 Mitochondrial processi 96.1 0.11 2.3E-06 49.3 12.1 162 99-265 264-442 (472)
27 COG0612 PqqL Predicted Zn-depe 95.0 1.1 2.4E-05 44.4 16.0 128 139-267 291-432 (438)
28 TIGR02110 PQQ_syn_pqqF coenzym 92.7 0.76 1.6E-05 48.1 10.0 65 309-390 614-678 (696)
29 PF05193 Peptidase_M16_C: Pept 87.5 4.3 9.4E-05 33.9 8.8 108 87-199 67-184 (184)
30 COG5023 Tubulin [Cytoskeleton] 45.8 16 0.00035 34.8 2.4 28 347-374 140-171 (443)
31 PF09186 DUF1949: Domain of un 38.6 1.1E+02 0.0024 19.9 6.1 46 137-182 8-53 (56)
32 KOG1374 Gamma tubulin [Cytoske 38.0 28 0.00061 33.3 2.7 44 332-375 119-174 (448)
33 PF01729 QRPTase_C: Quinolinat 36.7 41 0.00089 28.5 3.3 42 236-277 104-147 (169)
34 PF09851 SHOCT: Short C-termin 34.7 95 0.0021 18.0 4.1 28 173-200 3-30 (31)
35 cd02186 alpha_tubulin The tubu 34.2 48 0.001 32.8 3.9 23 346-368 140-162 (434)
36 PTZ00010 tubulin beta chain; P 30.1 43 0.00093 33.3 2.8 29 347-375 140-170 (445)
37 PLN00220 tubulin beta chain; P 28.0 60 0.0013 32.3 3.4 23 346-368 139-161 (447)
38 PRK06063 DNA polymerase III su 28.0 1.7E+02 0.0037 27.5 6.3 68 127-199 238-308 (313)
39 PRK05986 cob(I)alamin adenolsy 27.3 89 0.0019 27.1 3.9 35 239-275 131-166 (191)
40 cd02187 beta_tubulin The tubul 27.1 78 0.0017 31.3 4.0 23 347-369 139-161 (425)
41 PLN00221 tubulin alpha chain; 27.0 56 0.0012 32.5 3.0 24 346-369 141-164 (450)
42 PTZ00335 tubulin alpha chain; 26.7 59 0.0013 32.4 3.1 38 331-368 118-163 (448)
43 cd04922 ACT_AKi-HSDH-ThrA_2 AC 25.3 1.8E+02 0.004 19.3 4.7 45 139-183 20-65 (66)
44 cd04916 ACT_AKiii-YclM-BS_2 AC 25.2 2E+02 0.0044 19.1 4.9 46 139-184 20-66 (66)
45 cd04936 ACT_AKii-LysC-BS-like_ 24.3 2E+02 0.0042 18.8 4.6 44 138-182 18-61 (63)
46 TIGR00708 cobA cob(I)alamin ad 23.8 1.2E+02 0.0025 25.9 3.9 34 240-275 114-148 (173)
47 COG0157 NadC Nicotinate-nucleo 23.1 1.6E+02 0.0034 27.2 4.8 42 236-277 212-254 (280)
48 PRK09016 quinolinate phosphori 22.6 1.6E+02 0.0034 27.6 4.8 39 237-277 233-272 (296)
49 cd04923 ACT_AK-LysC-DapG-like_ 22.6 2E+02 0.0044 18.7 4.4 44 138-182 18-61 (63)
50 PRK06978 nicotinate-nucleotide 22.3 1.7E+02 0.0036 27.4 4.9 40 236-277 229-269 (294)
51 PRK07414 cob(I)yrinic acid a,c 22.1 1.3E+02 0.0029 25.7 4.0 35 239-275 131-166 (178)
52 PF13840 ACT_7: ACT domain ; P 21.9 2.1E+02 0.0045 19.6 4.3 39 140-180 27-65 (65)
53 PRK08385 nicotinate-nucleotide 21.8 1.7E+02 0.0036 27.1 4.8 41 237-277 207-251 (278)
54 PRK06559 nicotinate-nucleotide 20.9 1.7E+02 0.0037 27.2 4.7 40 236-277 221-261 (290)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-65 Score=463.45 Aligned_cols=318 Identities=49% Similarity=0.765 Sum_probs=301.1
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEe
Q 016092 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (395)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (395)
++.+++.++|+||++|..++++++.+++++++++|+++|.+...|++||+++|+|++|.+++..++...|+.+||+++++
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 016092 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (395)
+++|++.|.+++.+++++.++++|+|.+.+|.|++|+++.++..++-|+.+...+|+..+.+.+|.++| +++++.+.++
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCCCceEEecCC-----
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE--EPKSVYTGGDYRCQADS----- 306 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~~--~~~~~~~~~~~~~~~~~----- 306 (395)
+.+.|++|+.+.|.+|.+++|+|.||+++.|||+||++++.++++|+.||+...++ .+..+|+|+...+..+.
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999854433 45678999976665331
Q ss_pred CcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEE
Q 016092 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (395)
Q Consensus 307 ~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~ 386 (395)
..+-+||.++|++++ ++++|.+++.||+.+||||+|||||||||||+||||.+|.+++.|.|++.||+..|+|+|+|+
T Consensus 261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 126799999999996 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC
Q 016092 387 IQGTTVSH 394 (395)
Q Consensus 387 i~~~~~p~ 394 (395)
|+.+++|+
T Consensus 339 i~~s~~P~ 346 (472)
T KOG2067|consen 339 IYASAPPQ 346 (472)
T ss_pred EeccCCHH
Confidence 99999986
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-51 Score=373.21 Aligned_cols=311 Identities=31% Similarity=0.559 Sum_probs=287.9
Q ss_pred CCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec
Q 016092 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (395)
|+++.++|+||++|..+++...+++++++|++|+++|++.+.|.+||+|||.|+||++++...|+.+++.+|+.+|++++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 57889999999999999887789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 016092 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (395)
+|++.|..+++++++++++++|.|++.+..+.+.+++++|..++.|+++.+.+-+.+.++.+|..+| ++|++++++|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCC---CC-CCCCCCCCCceEEecCCCcCc
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP---RE-EPKSVYTGGDYRCQADSGDQL 310 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 310 (395)
+.|++|+.+||++|.+.||.++||+++.+| |+||++++++++||++++.... ++ .+++.|.|.+++..++ +.|.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd-~lP~ 270 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDD-DLPL 270 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCC-CCch
Confidence 999999999999999999999999999999 9999999999999999764322 22 2356789999988765 2389
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEE
Q 016092 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (395)
Q Consensus 311 ~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~ 390 (395)
+|+++++++++ | .+||++++.|.++|+|....+-.||+ ...|+|-+.+-+. .++.++.+|+..|.|+|+|++|+.
T Consensus 271 a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~--~~~s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 271 AHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGR--NLSSRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCcc--CCccHHHHHHHHH-HHHHHHhhhhcccccccceeEEEE
Confidence 99999999995 6 99999999999999999887655555 4559999999876 789999999999999999999999
Q ss_pred e-cC
Q 016092 391 T-VS 393 (395)
Q Consensus 391 ~-~p 393 (395)
| ++
T Consensus 346 ~~~~ 349 (467)
T KOG0960|consen 346 TDNL 349 (467)
T ss_pred ecCh
Confidence 9 44
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2.1e-45 Score=362.89 Aligned_cols=305 Identities=27% Similarity=0.430 Sum_probs=271.4
Q ss_pred CCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEee
Q 016092 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (395)
.+++..+|+||++++..+.+ .+.+++.++|++|++.|++...|++|+++||+|+||.+++..++.+.++..|+..++++
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 35899999999999987776 68999999999999999999999999999999999999888899999999999999999
Q ss_pred cceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 016092 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (395)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (395)
+.+.+.|++++++++++++++++.|++.+|.|++++|+++|..+.+|+++..++|...+.+.++..+| +|||+++.+|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCC-CCCCCCCC-CCCCCCceEE-ec--CCCc
Q 016092 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS-IHPREEPK-SVYTGGDYRC-QA--DSGD 308 (395)
Q Consensus 235 ~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~-~~~~~~~~-~~~~~~~~~~-~~--~~~~ 308 (395)
.+.|.+|+.++|++||+++|+|+||+|++|| ++++++.++++++|+.|+. .++...+. +...+..... .. ....
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 9999999999999999997 22222222 2222222222 21 2233
Q ss_pred CceEEEEEeecCCCCCCCc-chHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEE
Q 016092 309 QLTHFVLAFELPGGWHKDK-DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (395)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~-d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i 387 (395)
.++++.++++.+. ...+ +++++.+++.+|||+ ++||||+++||++|++|+++++.+.+.+.|.+.+
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~ 321 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSI 321 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceE
Confidence 6888999999886 4444 889999999999976 4599999999999999999998888889999999
Q ss_pred EEEecCC
Q 016092 388 QGTTVSH 394 (395)
Q Consensus 388 ~~~~~p~ 394 (395)
++.++++
T Consensus 322 ~~~~~~~ 328 (438)
T COG0612 322 YAGTAPE 328 (438)
T ss_pred EEEecCC
Confidence 9999854
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=6.2e-44 Score=360.85 Aligned_cols=293 Identities=18% Similarity=0.200 Sum_probs=253.1
Q ss_pred EEEcCCCcEEEEecC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHH-HHHHHHHHcCCeeeEeecce
Q 016092 81 ISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (395)
Q Consensus 81 ~~~L~NG~~v~~~~~-~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (395)
.++|+||++|++.+. ..+.+++.++|++|+++|+++..|++||+|||+|+||++++.. ++.+.++.+|+.+|++++.|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 468999999997554 4689999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHH
Q 016092 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 237 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 237 (395)
++.|++++++++++.+|+++.|++.+|.|++++++++|+.+++|+++..++|...+.+.+.+.+| +|||+++.+|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hccCC---HHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCceEEecCCCcCce
Q 016092 238 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYRCQADSGDQLT 311 (395)
Q Consensus 238 l~~i~---~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (395)
|+.++ .++|++||+++|.|+||+|+|+| +++++++++++++|+.|+....+... .+.+..+...+... ..++.
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~q~ 240 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGG-SEPRL 240 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEec-CcceE
Confidence 99876 99999999999999999999999 99999999999999999865443211 22222332333222 22667
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccc--eEEEEE
Q 016092 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG--MFGIQG 389 (395)
Q Consensus 312 ~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g--~f~i~~ 389 (395)
++.++++.+. ..+++ ++.+++++|+++. +|+|+.+||+ +|++|++++.+ .+.+.| .|.|++
T Consensus 241 ~l~~~~p~~~--~~d~~--al~lL~~iLg~g~-----------sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~ 303 (696)
T TIGR02110 241 WLLFALAGLP--ATARD--NVTLLCEFLQDEA-----------PGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEF 303 (696)
T ss_pred EEEEeecCCC--CCChH--HHHHHHHHhCCCc-----------chHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEE
Confidence 7776666554 34443 5899999999864 4999999997 79999999965 555555 999999
Q ss_pred Ee
Q 016092 390 TT 391 (395)
Q Consensus 390 ~~ 391 (395)
.+
T Consensus 304 ~l 305 (696)
T TIGR02110 304 SA 305 (696)
T ss_pred EE
Confidence 87
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.4e-38 Score=342.66 Aligned_cols=304 Identities=14% Similarity=0.165 Sum_probs=257.2
Q ss_pred CCCeEEEEcCCCcEEEE-ecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC-HHHHHHHHHHcCCeeeE
Q 016092 76 PGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQA 153 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~-~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 153 (395)
...++..+|+||++|++ .+...+.+.+.+++++|+.+|+++..|++||++||+|+||++++ ..++.+.++.+||.+|+
T Consensus 41 ~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 120 (961)
T PRK15101 41 PRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA 120 (961)
T ss_pred ccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence 45788999999999996 45556899999999999999999999999999999999999996 57999999999999999
Q ss_pred eecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 016092 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 232 (395)
+|+.+++.|++++++++++.+|+++++++.+|.|++++++++|..+.+|++...++|...+.+.+.+.+| +|||+++..
T Consensus 121 ~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~ 200 (961)
T PRK15101 121 STASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSG 200 (961)
T ss_pred eECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999998888999999999999999 999999999
Q ss_pred CChHHhccC----CHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCC--CceEEe
Q 016092 233 APESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTG--GDYRCQ 303 (395)
Q Consensus 233 ~~~~~l~~i----~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~--~~~~~~~--~~~~~~ 303 (395)
|+.++|..+ +.++|++||++||.|+||+|+|+| ++++++.++++++|+.||....+.+ ..+.+.. ....+.
T Consensus 201 G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (961)
T PRK15101 201 GNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIH 280 (961)
T ss_pred CCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEE
Confidence 999999997 699999999999999999999999 9999999999999999987543211 1111111 111222
Q ss_pred cCCCcCceEEEEEeecCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCC--C
Q 016092 304 ADSGDQLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY--N 380 (395)
Q Consensus 304 ~~~~~~~~~v~~~~~~~~~~~~~-~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~--~ 380 (395)
..+..++..+.+.|+.|. ... .+.....+++.+|+++.+ ++|+..|+ ++||+|+++++...+ .
T Consensus 281 ~~~~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~~~~~ 346 (961)
T PRK15101 281 YVPAQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADPMVDR 346 (961)
T ss_pred EEECCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeeccccccCC
Confidence 112226788999999885 222 223357889999997643 56777775 779999999986643 5
Q ss_pred ccceEEEEEEecC
Q 016092 381 HSGMFGIQGTTVS 393 (395)
Q Consensus 381 ~~g~f~i~~~~~p 393 (395)
+.|.|.|++.+.|
T Consensus 347 ~~g~f~i~~~~~~ 359 (961)
T PRK15101 347 NSGVFAISVSLTD 359 (961)
T ss_pred CceEEEEEEEcCh
Confidence 6899999999876
No 6
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=4.6e-31 Score=240.60 Aligned_cols=302 Identities=28% Similarity=0.454 Sum_probs=252.0
Q ss_pred CeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecc
Q 016092 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (395)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (395)
.....+|.||++|...+.+.++.++.+.|++||++|+.++.|++|+++...++.|.+++...|.+.++..||.++...+|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChH
Q 016092 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPES 236 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k-~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (395)
|.+.|++++++++++..+.+|.+.+.+|.|.+||+++.. ..+..++. ..+|...+.+.+|+++|.+.+|++++.+.-
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999998 66766555 467999999999999994499999999888
Q ss_pred HhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCceEEecCCCcCceEEEEE
Q 016092 237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLA 316 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 316 (395)
.+.+++.++|..|..++|...|++++.+|+|++.++...++++ .++........+..+.|++.+..... ...+|+++
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~va 256 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVA 256 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCC--ceeEEEEe
Confidence 9999999999999999999999999999999999999999983 34433333334456778888776655 67777776
Q ss_pred eecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhh-CCCeEEEEeeecCCCccceEEEEEEec
Q 016092 317 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE-FPQVQSFSAFSNIYNHSGMFGIQGTTV 392 (395)
Q Consensus 317 ~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~-~g~~Y~~~a~~~~~~~~g~f~i~~~~~ 392 (395)
-.+-.. .+.++..+..++.++|+.+..--- |. +.| .++-.. .+..-+++|++.+|.|.|+|++|+..+
T Consensus 257 gegAAa-~~~k~~~a~av~~~~Lg~~~~~k~---~t---~~~-~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~ 325 (429)
T KOG2583|consen 257 GEGAAA-GNLKVLAAQAVLLAALGNSAPVKR---GT---GLL-SEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQ 325 (429)
T ss_pred cCcccc-cchHHHHHHHHHHHHHhccccccc---cc---chH-HHHHhhccccCceeeeecccccCCceEEEEEEec
Confidence 655531 256888999999999997531000 11 223 333322 223456778999999999999998754
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=2.9e-31 Score=284.55 Aligned_cols=297 Identities=17% Similarity=0.164 Sum_probs=238.5
Q ss_pred CeEEEEcCCCcEEEEecCCC---CEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcC--Ceee
Q 016092 78 KTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNVQ 152 (395)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~---~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g--~~~~ 152 (395)
.+...-.+||++|++...+. +.+.+.++|+.|+ .+..|++|++|||+|+||++++..++...++..| +.+|
T Consensus 91 ~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lN 166 (1119)
T PTZ00432 91 ATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLN 166 (1119)
T ss_pred EEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCcc
Confidence 34555678999999655443 4789999999997 3468999999999999999999999999998865 7899
Q ss_pred EeecceeEEEEEEcCCC-CHHHHHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHHH
Q 016092 153 ASASREQMGYSFDALKT-YVPEMVELLIDCVRNPVFLDWEV--NE---------Q--------------------LTKVK 200 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~-~~~~~l~ll~~~l~~p~f~~~~~--~~---------~--------------------k~~~~ 200 (395)
++|+.|++.|.+.++++ ++..+++++.|++.+|.|+++++ .+ + +..+.
T Consensus 167 A~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~ 246 (1119)
T PTZ00432 167 AYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVY 246 (1119)
T ss_pred ccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHH
Confidence 99999999999999986 79999999999999999998763 22 1 66789
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhc
Q 016092 201 SEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLL 279 (395)
Q Consensus 201 ~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~ 279 (395)
+|++...++|..++.+.+.+.+|+|||+++..|++++|..++.++|++||+++|+|+||+|+++| ++++++.++++++|
T Consensus 247 ~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f 326 (1119)
T PTZ00432 247 SEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYL 326 (1119)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCC------C---CCCC--CCCCCceEEe--c-CCCcCceEEEEE-eecCCCC---------CC-CcchHHHHH
Q 016092 280 SDLPSIHPR------E---EPKS--VYTGGDYRCQ--A-DSGDQLTHFVLA-FELPGGW---------HK-DKDAMTLTV 334 (395)
Q Consensus 280 ~~lp~~~~~------~---~~~~--~~~~~~~~~~--~-~~~~~~~~v~~~-~~~~~~~---------~~-~~d~~al~v 334 (395)
+.+|..... . .+.+ .+..+...+. . ..+.++.++.++ |..++.. .. .++..++.|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~V 406 (1119)
T PTZ00432 327 TKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLV 406 (1119)
T ss_pred hhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHH
Confidence 888754211 0 0011 1111222221 1 112245666665 9874210 12 368899999
Q ss_pred HHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEE-EeeecCCCccceEEEEEE
Q 016092 335 LQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSF-SAFSNIYNHSGMFGIQGT 390 (395)
Q Consensus 335 l~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~-~a~~~~~~~~g~f~i~~~ 390 (395)
|+++|+++.+ |+|+++||+ .|++|++ ++.+....+.+.|.|++.
T Consensus 407 Ls~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~ 451 (1119)
T PTZ00432 407 LNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLK 451 (1119)
T ss_pred HHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEE
Confidence 9999998754 999999997 6999996 445556668899988875
No 8
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-29 Score=252.57 Aligned_cols=299 Identities=19% Similarity=0.240 Sum_probs=249.2
Q ss_pred CCCeEEEEcCCCcEEEE-ecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCH-HHHHHHHHHcCCeeeE
Q 016092 76 PGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQA 153 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~-~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~~ 153 (395)
..+++..+|+||+++.+ .+...+.+...|.|+.|+..||.+.+|+||++|||+|.|+++++. ..+..+|..+||+.|+
T Consensus 21 ~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA 100 (937)
T COG1025 21 DRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNA 100 (937)
T ss_pred CcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcccc
Confidence 35899999999999986 555567999999999999999999999999999999999999865 5799999999999999
Q ss_pred eecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 016092 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 232 (395)
+|..+.++|.+++.++.++.+|+.+++.+.+|.|+++.+++++..+..|......+-.+++.+.....+- +||+.+...
T Consensus 101 ~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~ 180 (937)
T COG1025 101 STAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFST 180 (937)
T ss_pred ccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999888888888888777777 999999999
Q ss_pred CChHHhcc----CCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCCC----CCceE
Q 016092 233 APESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYT----GGDYR 301 (395)
Q Consensus 233 ~~~~~l~~----i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~----~~~~~ 301 (395)
|+.++|.. -..++|.+||+++|.+++|+++|.| -+.+++.+++.++|+.+|......++. +.+. +...+
T Consensus 181 GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~ 260 (937)
T COG1025 181 GNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH 260 (937)
T ss_pred CChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEE
Confidence 99999987 4578999999999999999999999 999999999999999999665433222 2222 22222
Q ss_pred EecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCC-
Q 016092 302 CQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN- 380 (395)
Q Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~- 380 (395)
+. +..+...+.+.|+.++.. ..-..-....+.+++|..++ | | |-.-| .+.||+-++.|+...+.
T Consensus 261 i~--p~~~~~~L~i~f~i~~~~-~~~~~~~~~~~s~Lig~es~------g----s-L~~~L-k~~Glit~l~a~~~~~~~ 325 (937)
T COG1025 261 IV--PAKPRPRLRIYFPIDDNS-AKFRSKPDEYLSHLIGNESP------G----S-LLAWL-KKQGLITELSAGLDPISG 325 (937)
T ss_pred ec--cCCCCceEEEEEEcCCcc-cccccCCHHHHHHHhccCCC------c----h-HHHHH-HhccchhhhccccccccC
Confidence 22 222667899999999722 22224567888899997642 2 4 33344 46699999999987665
Q ss_pred ccceEEEEE
Q 016092 381 HSGMFGIQG 389 (395)
Q Consensus 381 ~~g~f~i~~ 389 (395)
+.|.|.|..
T Consensus 326 n~~~f~is~ 334 (937)
T COG1025 326 NYGVFAISY 334 (937)
T ss_pred CcceEEEEe
Confidence 788887764
No 9
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.3e-28 Score=246.17 Aligned_cols=300 Identities=17% Similarity=0.181 Sum_probs=249.6
Q ss_pred CCCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC-HHHHHHHHHHcCCeeeE
Q 016092 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQA 153 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 153 (395)
...++..+|+||+++++...+ .+..++.+-|..||..||.+.+|+|||+|||+|.||++|+ ..++.+.+.++||+-||
T Consensus 25 ~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA 104 (974)
T KOG0959|consen 25 TREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNA 104 (974)
T ss_pred ccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCcccc
Confidence 348899999999999854434 5588888999999999999999999999999999999987 45678889999999999
Q ss_pred eecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCC
Q 016092 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 232 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 232 (395)
+|+.+++.|++.+..++++.+|+.+++.+..|.|.++.+++++..+..|.+...++-.++..+.....+- +||+++...
T Consensus 105 ~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~t 184 (974)
T KOG0959|consen 105 YTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFST 184 (974)
T ss_pred ccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccc
Confidence 9999999999999999999999999999999999999999999999999999888888888777777777 999999999
Q ss_pred CChHHhccCC-----HHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCC----CCce
Q 016092 233 APESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYT----GGDY 300 (395)
Q Consensus 233 ~~~~~l~~i~-----~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~----~~~~ 300 (395)
|+.+.|.... .+.|.+||++||.+++|+++|+| .+.+.+..++.+.|+.++....+.+. .+++. +..+
T Consensus 185 GN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~ 264 (974)
T KOG0959|consen 185 GNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLV 264 (974)
T ss_pred cchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEE
Confidence 9999998887 89999999999999999999999 99999999999999999866554321 12222 2334
Q ss_pred EEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeec-CC
Q 016092 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN-IY 379 (395)
Q Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~-~~ 379 (395)
.++... +...+.+.|+.|+. ...-+.-....+.+++|..+. | | |...|+. +||+-+..+... ..
T Consensus 265 ~v~pik--~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg~------G----S-L~~~Lk~-~gw~~sl~a~~~~~a 329 (974)
T KOG0959|consen 265 RVVPIK--DGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEGP------G----S-LLSYLKR-LGWATSLEAGIPEFA 329 (974)
T ss_pred EEEecc--ccceEEEEEecCCc-ccccccCcHHHHHHHhccCCc------c----h-HHHHHHH-hhchheeecCCCccc
Confidence 443333 56778889999973 244566678899999997532 2 5 5567775 599999999876 33
Q ss_pred CccceEEEEEE
Q 016092 380 NHSGMFGIQGT 390 (395)
Q Consensus 380 ~~~g~f~i~~~ 390 (395)
.+.+.|.+.+.
T Consensus 330 s~~~~f~v~id 340 (974)
T KOG0959|consen 330 SGYSFFNVSID 340 (974)
T ss_pred cccceEEEEEE
Confidence 45677766553
No 10
>PRK15101 protease3; Provisional
Probab=99.94 E-value=1.3e-24 Score=234.49 Aligned_cols=290 Identities=11% Similarity=0.075 Sum_probs=224.6
Q ss_pred CeEEEEcCCCcEEEEecCC----CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeE
Q 016092 78 KTKISTLPNGVKIASETSV----SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (395)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~----~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (395)
..+.+.++||++||+.+.+ .|.+.+.+.+.+|...+++...+++.++..|+ +.+..++....+..|.+++.
T Consensus 522 ~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll-----~~~l~e~~y~a~~aG~~~~~ 596 (961)
T PRK15101 522 HPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA-----GLALDQLSNQASVGGISFST 596 (961)
T ss_pred CCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH-----HHHHHHHhchHHhcCcEEEE
Confidence 4578889999999965443 58999999999999998888999999999887 33455666667778999999
Q ss_pred eecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-Hhc-CCCCCCCC
Q 016092 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHS-AGY-SGALANPL 231 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~-~~~-~~~~~~~~ 231 (395)
. +.+.+.+++++++++++.+++++.+.+.+|.|++++|+++|+.+.+++++...+ ..+...+.. ..| .|||+.+
T Consensus 597 ~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~py~~~- 672 (961)
T PRK15101 597 N-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKG--KAYEQAIMPAQMLSQVPYFER- 672 (961)
T ss_pred c-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccc--CcHHHHHHHHHHHhcCCCCCH-
Confidence 9 799999999999999999999999999999999999999999999999875532 122233322 345 8999864
Q ss_pred CCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCC-CC--CCCCCCCceEEecCCC
Q 016092 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-EP--KSVYTGGDYRCQADSG 307 (395)
Q Consensus 232 ~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~-~~--~~~~~~~~~~~~~~~~ 307 (395)
.++.+.|++++.++|++||+++|.+.+++++++| ++.+++.++++++++.++...... .. .....+....+.....
T Consensus 673 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (961)
T PRK15101 673 DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGKDVVVDKKQSVNFEKAGS 752 (961)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcccccccceEeCCCCeEEEecCCC
Confidence 4688999999999999999999999999999999 999999999998888776432211 00 0111122222332222
Q ss_pred cCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEE
Q 016092 308 DQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (395)
Q Consensus 308 ~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i 387 (395)
..+..+.++|...+ . +.....+++.+|+++ |++|||++||+++|++|+|+++.....+.+.+.+
T Consensus 753 ~~~~~~~~~~~~~g--~---~~~~~~v~~~lLg~~-----------~ssrlf~~LRtk~qLgY~V~s~~~~~~~~~~~~~ 816 (961)
T PRK15101 753 STDSALAAVYVPTG--Y---DEYQSSAYSSLLGQI-----------IQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGF 816 (961)
T ss_pred CCCCeEEEEEEeCC--C---CCHHHHHHHHHHHHH-----------HhHHHHHHHHHHhhhceEEEEEeeccCCeeeEEE
Confidence 34566667675543 2 236778889999875 4599999999999999999999887766666666
Q ss_pred EEEec
Q 016092 388 QGTTV 392 (395)
Q Consensus 388 ~~~~~ 392 (395)
+++++
T Consensus 817 ~vqs~ 821 (961)
T PRK15101 817 LLQSN 821 (961)
T ss_pred EEECC
Confidence 66544
No 11
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.92 E-value=6.9e-24 Score=178.39 Aligned_cols=146 Identities=37% Similarity=0.565 Sum_probs=138.4
Q ss_pred EEEEe-cCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecceeEEEEEEcC
Q 016092 89 KIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (395)
Q Consensus 89 ~v~~~-~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (395)
||++. +...+.+.+.++|++|+++|++...|++|++++|+++|+.+++..++.+.++.+|+.++++++++++.|+++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 57754 45678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 016092 168 KTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (395)
Q Consensus 168 ~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (395)
+++++.+|++|.+++.+|.|++++|+++|..+..++++...+|...+.+.+++.+| ++||+++.+|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998876
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=181.05 Aligned_cols=296 Identities=13% Similarity=0.142 Sum_probs=226.7
Q ss_pred eEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHH--cCCeeeEeec
Q 016092 79 TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQASAS 156 (395)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~~~~~~ 156 (395)
+....-++|++++...++.+...+++.|+ .++.+..|++|.|||+.+.|+.+|+..+.--.+.. ++-.+||.|.
T Consensus 22 ~~~~H~~TGa~l~hi~~~d~~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~ 97 (978)
T COG1026 22 YILEHEKTGAELAHIKNEDPNNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTF 97 (978)
T ss_pred EEEeeccCCceEEEecCCCcCceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccC
Confidence 33344468999997666666556666664 45667899999999999999999987775444332 4555899999
Q ss_pred ceeEEEEEEcCC-CCHHHHHHHHHHhhhCCCCCHHHHHHHH--------------HHHHHHHHhhcCChHHHHHHHHHHH
Q 016092 157 REQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQL--------------TKVKSEISEVSNNPQSLLLEAIHSA 221 (395)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~~l~ll~~~l~~p~f~~~~~~~~k--------------~~~~~el~~~~~~p~~~~~~~l~~~ 221 (395)
.|.++|-+++.. +++-.++.+..|.+.+|...+|.|.++- ..+.+|++....++..++++.+.+.
T Consensus 98 ~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~s 177 (978)
T COG1026 98 PDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQS 177 (978)
T ss_pred CCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHh
Confidence 999999998877 6899999999999999999999888763 3456788888899999999999999
Q ss_pred hc-CCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhh-cCCCCCCCCCCC--CCCCCC
Q 016092 222 GY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPREE--PKSVYT 296 (395)
Q Consensus 222 ~~-~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~-~~~lp~~~~~~~--~~~~~~ 296 (395)
+| +..|+....|.+..|..++.+++++||+++|+|+|+.+.++| ++.+++++.++.. |...++.....+ ....+.
T Consensus 178 lfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~ 257 (978)
T COG1026 178 LFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFK 257 (978)
T ss_pred hCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccC
Confidence 99 889998889999999999999999999999999999999999 9999999999876 655554432111 111111
Q ss_pred C-Cc----eEEe-cCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCe-
Q 016092 297 G-GD----YRCQ-ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV- 369 (395)
Q Consensus 297 ~-~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~- 369 (395)
. .. ..+. ...+..|+.+.++|-++. ..+..+..++.||..+|-++.+ +.|.++|.|- |+.
T Consensus 258 ~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~-~~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg~ 324 (978)
T COG1026 258 KPRRKVLEYPISFDEEDEDQGLLSLSWLGGS-ASDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLGF 324 (978)
T ss_pred cccccceeeccCCCCCCCceeEEEEEEecCC-cccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCCc
Confidence 1 11 1111 123346899999999986 2355889999999999998876 9999999986 555
Q ss_pred EEEEeeecCCCccceEEEEEEe
Q 016092 370 QSFSAFSNIYNHSGMFGIQGTT 391 (395)
Q Consensus 370 Y~~~a~~~~~~~~g~f~i~~~~ 391 (395)
+.+..++...--...|.+.+..
T Consensus 325 ~~~~g~~~~~~~~~~f~v~~~g 346 (978)
T COG1026 325 ADVSGSYDSDLKETIFSVGLKG 346 (978)
T ss_pred ccccceeccccceeEEEEEecC
Confidence 4444434444445666655543
No 13
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.5e-17 Score=159.68 Aligned_cols=304 Identities=15% Similarity=0.104 Sum_probs=211.3
Q ss_pred CCCCCCCCCCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHc
Q 016092 69 SLPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI 147 (395)
Q Consensus 69 ~~~~~~~~~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~ 147 (395)
++|..+.-.+++ ...-||++|...+.. +.++++.+.++.++..+. -.+-+.-+++.++..||...+..++.+.+..+
T Consensus 552 DIp~~~~~~~~~-v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rk 629 (998)
T KOG2019|consen 552 DIPKTIPYTKLE-VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRK 629 (998)
T ss_pred cCCCCCCcccee-eeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhh
Confidence 555555433333 345689999876666 459999999999997665 35678888899999999999999999999998
Q ss_pred CCeeeEeec----------ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhcCChHHHHHH
Q 016092 148 GGNVQASAS----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVSNNPQSLLLE 216 (395)
Q Consensus 148 g~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~-~~~~~k~~~~~el~~~~~~p~~~~~~ 216 (395)
.|.++++.. ...+.++..++.++++++++++..++.+++|+++ .|+..+.....++.+...+....+..
T Consensus 630 TGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~ 709 (998)
T KOG2019|consen 630 TGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAA 709 (998)
T ss_pred cCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHh
Confidence 887776642 1247888899999999999999999999999954 35555555555555544433322222
Q ss_pred HHHHHhc-CCCCCCCCCCChHHhc---cC---C-------HHHHHHHHHhhccCCCcEEEEec--CCHHHHHHHHHhhcC
Q 016092 217 AIHSAGY-SGALANPLLAPESAIN---RL---N-------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLS 280 (395)
Q Consensus 217 ~l~~~~~-~~~~~~~~~~~~~~l~---~i---~-------~~~l~~~~~~~~~~~~~~l~i~G--~~~~~l~~~i~~~~~ 280 (395)
.-..+.+ ....-...++-.+.++ ++ . .+.|.++.+-....++|.+.++. ..+..+++.+++++.
T Consensus 710 ~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~ 789 (998)
T KOG2019|consen 710 ARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLD 789 (998)
T ss_pred hhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHH
Confidence 2222222 1111111122222221 11 1 23566766666788999999988 889999999999999
Q ss_pred CCCCCCCCCC---CCCC-CCCCc-eEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 016092 281 DLPSIHPREE---PKSV-YTGGD-YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 355 (395)
Q Consensus 281 ~lp~~~~~~~---~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~ 355 (395)
.+|...+... ..+. ..+.+ .++..+. -+..++.-+..+.+ ++++|...+.|++.+|..
T Consensus 790 ~lp~e~p~g~~st~d~r~p~~~~~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~-------------- 852 (998)
T KOG2019|consen 790 SLPRENPSGSKSTWDARLPLRSEAIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN-------------- 852 (998)
T ss_pred hccccCCCCCccCccccCCCCceeEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------
Confidence 8885332211 1111 11222 2223332 23556666666665 789999999999999995
Q ss_pred cHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 356 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 356 srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
..||.+|||+ |+|||.++.++.. .|+|.+|.++||+
T Consensus 853 k~Lh~evRek-GGAYGgg~s~~sh--~GvfSf~SYRDpn 888 (998)
T KOG2019|consen 853 KWLHDEVREK-GGAYGGGCSYSSH--SGVFSFYSYRDPN 888 (998)
T ss_pred HHHHHHHHHh-cCccCCccccccc--cceEEEEeccCCc
Confidence 8999999998 7899999988776 8999999999997
No 14
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.78 E-value=4.5e-17 Score=165.81 Aligned_cols=311 Identities=19% Similarity=0.209 Sum_probs=205.6
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEcCCCcEEEE-ecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHH
Q 016092 60 PLPGVSLPPSLPDYVEPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL 138 (395)
Q Consensus 60 pl~~~~~~~~~~~~~~~~~~~~~~L~NG~~v~~-~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~ 138 (395)
-||...+. .+|..++....+ ..-.|..+|+. ....++++++.++++...... ...+-+.-+...+...||.++++.
T Consensus 510 ~lP~l~~~-dvp~~~~k~~l~-~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~-~llpyL~L~~~~l~~lgt~~~~y~ 586 (978)
T COG1026 510 TLPTLKLG-DVPDPIEKTSLE-TEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPS-ELLPYLPLFAFALTNLGTETYSYK 586 (978)
T ss_pred hccccchh-cCCCccccccee-eeccCCcceEEeecCCCCeEEEEEEeecCCCCh-hhhhhHHHHHHHHHhcCCCCcCHH
Confidence 34444422 456666654444 34467777875 555677999999999955443 345556555556666799999999
Q ss_pred HHHHHHHHcCCeeeEeec-----------ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHHHhh
Q 016092 139 RIVREVEAIGGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVF-LDWEVNEQLTKVKSEISEV 206 (395)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f-~~~~~~~~k~~~~~el~~~ 206 (395)
++.++++.+.|.+++..+ +..+.+++++++++.+++++++.+++.++.| |.+.+....+++++.+...
T Consensus 587 e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~ 666 (978)
T COG1026 587 ELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSS 666 (978)
T ss_pred HHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHh
Confidence 999999998776655543 2468999999999999999999999999999 6677777777777777766
Q ss_pred cCC-hHHHHHHHHHHHhc-CCCCCCCCCC--ChHHhccCC-----------HHHHHHHHHhhccCCCcEEEEec-CCHHH
Q 016092 207 SNN-PQSLLLEAIHSAGY-SGALANPLLA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-VEHDQ 270 (395)
Q Consensus 207 ~~~-p~~~~~~~l~~~~~-~~~~~~~~~~--~~~~l~~i~-----------~~~l~~~~~~~~~~~~~~l~i~G-~~~~~ 270 (395)
..+ +...+........+ ...+.....| -.+-|..+. .+.|++.+++++..+|+.+++.| .+ +
T Consensus 667 vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~ 744 (978)
T COG1026 667 VRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--K 744 (978)
T ss_pred hhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--h
Confidence 555 55555555444444 3333221111 112222221 24688889999999999777777 33 2
Q ss_pred HHHHHHhhcCCCCC----C-CCCCCCC---CCCCC-CceEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcC
Q 016092 271 LVSVAEPLLSDLPS----I-HPREEPK---SVYTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGG 341 (395)
Q Consensus 271 l~~~i~~~~~~lp~----~-~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg 341 (395)
+.+.+++-|-++-. . ..+..+. ....+ .......+. +.++.+++|+.-...+.+||.+++.|++.+|+.
T Consensus 745 ~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~ 822 (978)
T COG1026 745 ILDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS 822 (978)
T ss_pred hHHHHHHHhhhhhcccCcccccCCCCCCcchhhhccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc
Confidence 33333333333321 1 1111111 11111 222223333 556666777554333689999999999999995
Q ss_pred CCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 342 GGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 342 ~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
..||.+||++ |+|||+++..+.. .|.|.++.++||+
T Consensus 823 --------------~~lw~~IR~~-GGAYGa~as~~~~--~G~f~f~sYRDPn 858 (978)
T COG1026 823 --------------GYLWNKIREK-GGAYGASASIDAN--RGVFSFASYRDPN 858 (978)
T ss_pred --------------chhHHHHHhh-ccccccccccccC--CCeEEEEecCCCc
Confidence 7899999997 8899999886644 8999999999997
No 15
>PTZ00432 falcilysin; Provisional
Probab=99.74 E-value=2.2e-16 Score=170.28 Aligned_cols=287 Identities=15% Similarity=0.102 Sum_probs=194.5
Q ss_pred cCCCcEEEEecCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCCHHHHHHHHHHcCCeeeEee----c-
Q 016092 84 LPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQASA----S- 156 (395)
Q Consensus 84 L~NG~~v~~~~~~~~-~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~~~----~- 156 (395)
..+|++|+..+.+.+ ++++.++|+.....+. ......|+..++.. ||.++++.++...++...|.+++++ +
T Consensus 665 ~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e--~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~ 742 (1119)
T PTZ00432 665 DGGSVTVLVHPIESRGILYLDFAFSLDSLTVD--ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSET 742 (1119)
T ss_pred cCCCcceEEEecCCCCeEEEEEEecCCCCCHH--HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 457899987666654 9999999999876553 44555666666554 9999999999999999877776542 2
Q ss_pred -----------ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhc
Q 016092 157 -----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGY 223 (395)
Q Consensus 157 -----------~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~el~~~~~-~p~~~~~~~l~~~~~ 223 (395)
...+.++++|+.++++++++++.+++.++.|++.+ +....++.+..+.+... +...++...+.+...
T Consensus 743 ~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S 822 (1119)
T PTZ00432 743 NNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFS 822 (1119)
T ss_pred cccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 23689999999999999999999999999999765 77777777777765443 444444432222111
Q ss_pred CCCCCCCC-CC--ChHHhccCC-----------HHHHHHHHHhhccCCCcEEEEec-C-CHHHHHHHHHhhcCCCCCC--
Q 016092 224 SGALANPL-LA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI-- 285 (395)
Q Consensus 224 ~~~~~~~~-~~--~~~~l~~i~-----------~~~l~~~~~~~~~~~~~~l~i~G-~-~~~~l~~~i~~~~~~lp~~-- 285 (395)
...+.... .| -...|+.+. .+.|.+++++.|+.+|+.+.++| . ..+.+.+.+..++..++..
T Consensus 823 ~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~ 902 (1119)
T PTZ00432 823 VSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFK 902 (1119)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccc
Confidence 01111110 01 111122110 34588888999999999999999 4 5566667667777766421
Q ss_pred --C--CCCCCCC-------CCCC--CceEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCC
Q 016092 286 --H--PREEPKS-------VYTG--GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGK 352 (395)
Q Consensus 286 --~--~~~~~~~-------~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~ 352 (395)
. ....+.. .+.. ....+..+. ...+++.+.+... ..+++.+++.|+.++|..
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~----------- 967 (1119)
T PTZ00432 903 ENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN----------- 967 (1119)
T ss_pred cccccccccccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHcc-----------
Confidence 1 1100000 0111 112222333 6677777754443 467789999999999995
Q ss_pred CcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 353 GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 353 g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
++||++||++ |+|||+++... ..|.|.++.++||+
T Consensus 968 ---~yLw~~IR~~-GGAYG~~~~~~---~~G~~~f~SYRDPn 1002 (1119)
T PTZ00432 968 ---SYLWKTVRMS-LGAYGVFADLL---YTGHVIFMSYADPN 1002 (1119)
T ss_pred ---ccchHHHccc-CCccccCCccC---CCCeEEEEEecCCC
Confidence 7899999998 88999996643 36999999999997
No 16
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.74 E-value=3.4e-17 Score=141.59 Aligned_cols=141 Identities=25% Similarity=0.363 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCC---CCC-CC-C-C--CCCCCceEEecCCCcCc
Q 016092 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PRE-EP-K-S--VYTGGDYRCQADSGDQL 310 (395)
Q Consensus 240 ~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~---~~~-~~-~-~--~~~~~~~~~~~~~~~~~ 310 (395)
+||.++|++||+++|+|+||+++++| ++++++.++++++|+.|+... ... .. . + ...+......... .++
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKD-ESQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESS-SSS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccc-ccc
Confidence 47899999999999999999999999 999999999999999998653 111 11 1 1 1122222222222 278
Q ss_pred eEEEEEeecCCCCC-CCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEE
Q 016092 311 THFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 389 (395)
Q Consensus 311 ~~v~~~~~~~~~~~-~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~ 389 (395)
+.+.++|++++ . +.++..++.++..+|+++ ++++|+.+||++.+++|++.+++..+.+.|+|.+++
T Consensus 80 ~~v~~~~~~~~--~~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~ 146 (184)
T PF05193_consen 80 SIVSIAFPGPP--IKDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISF 146 (184)
T ss_dssp EEEEEEEEEEE--TGTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEE
T ss_pred ccccccccccc--ccccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEE
Confidence 99999999997 4 789999999999999986 459999999999999999999988777899999999
Q ss_pred EecCC
Q 016092 390 TTVSH 394 (395)
Q Consensus 390 ~~~p~ 394 (395)
.+.|+
T Consensus 147 ~~~~~ 151 (184)
T PF05193_consen 147 QVTPE 151 (184)
T ss_dssp EEEGG
T ss_pred EcCcc
Confidence 99875
No 17
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-16 Score=152.17 Aligned_cols=292 Identities=14% Similarity=0.125 Sum_probs=222.2
Q ss_pred EcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHH-HHHHHHH-cCCeeeEeecceeE
Q 016092 83 TLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEA-IGGNVQASASREQM 160 (395)
Q Consensus 83 ~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~-~g~~~~~~~~~~~~ 160 (395)
.-+-|.++++.+.+.+--.+++.| +..+++..|+.|++||....|+.+|+-.+ +.+.|.. +.-.+|+++..|++
T Consensus 58 H~~Tgae~lhl~reD~N~vFsI~F----rTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T 133 (998)
T KOG2019|consen 58 HKKTGAEVLHLDREDENNVFSIVF----RTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYT 133 (998)
T ss_pred ecCCCceeEeeccCCCCceeEEEe----ecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcc
Confidence 335799998654443322333444 34566789999999999999999987544 4455543 44568999999999
Q ss_pred EEEEEcCC-CCHHHHHHHHHHhhhCCCCCHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHHH
Q 016092 161 GYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAIHSA 221 (395)
Q Consensus 161 ~~~~~~~~-~~~~~~l~ll~~~l~~p~f~~~~~~~~------------------k~~~~~el~~~~~~p~~~~~~~l~~~ 221 (395)
.|-+...+ +|+..+.++..|....|...+.+|.++ |..+.+|++..-.+|+.++...+++.
T Consensus 134 ~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~ 213 (998)
T KOG2019|consen 134 FYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQA 213 (998)
T ss_pred eeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHh
Confidence 99987766 689999999999999999888888776 55778899988899999999999999
Q ss_pred hc-CCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCC
Q 016092 222 GY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTG 297 (395)
Q Consensus 222 ~~-~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~--~~~~~~~ 297 (395)
+| .+.||....|++..|..++.++|++||+++|.|+|..+..+| ++.+++.++++.-|....+.+.... ....+..
T Consensus 214 L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~k 293 (998)
T KOG2019|consen 214 LFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDK 293 (998)
T ss_pred hCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCcccccccccc
Confidence 99 999999989999999999999999999999999999999999 9999999999877665543332211 1112221
Q ss_pred C-ceEEe--c---CCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCC--e
Q 016092 298 G-DYRCQ--A---DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQ--V 369 (395)
Q Consensus 298 ~-~~~~~--~---~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~--~ 369 (395)
. ++.+. . +.+..|+.+.+.|-.+. ..+..+.+++.||.++|-+|++ |.+|+.|.|- |+ -
T Consensus 294 p~rvve~~p~d~~~~p~Kq~~~s~s~L~~~-p~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiES-GLGtE 360 (998)
T KOG2019|consen 294 PRRVVEKGPADPGDLPKKQTKCSNSFLSND-PLDTYETFALKVLSHLLLDGPS-----------SPFYKALIES-GLGTE 360 (998)
T ss_pred CceeeeecCCCCCCCccceeEEEEEeecCC-chhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHc-CCCcc
Confidence 1 11111 1 12335778888887765 3456788999999999998876 9999999986 44 4
Q ss_pred EEEEeeecCCCccceEEEEEEe
Q 016092 370 QSFSAFSNIYNHSGMFGIQGTT 391 (395)
Q Consensus 370 Y~~~a~~~~~~~~g~f~i~~~~ 391 (395)
.++.+.+..+.-.++|++..+.
T Consensus 361 fsvnsG~~~~t~~~~fsVGLqG 382 (998)
T KOG2019|consen 361 FSVNSGYEDTTLQPQFSVGLQG 382 (998)
T ss_pred cccCCCCCcccccceeeeeecc
Confidence 6666776666667888776553
No 18
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-14 Score=140.14 Aligned_cols=274 Identities=14% Similarity=0.169 Sum_probs=202.1
Q ss_pred CCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHc-CCeeeEeecceeEEEEE
Q 016092 86 NGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI-GGNVQASASREQMGYSF 164 (395)
Q Consensus 86 NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~-g~~~~~~~~~~~~~~~~ 164 (395)
-|++|++-..+.+.+.-.+.|. .|...+.|+.|-+||+.|.|+++|+...+...+... -++.|+.++.|++.|++
T Consensus 28 Tkl~va~~~~pts~vhG~f~v~----TEa~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtL 103 (1022)
T KOG0961|consen 28 TKLRVAIGEVPTSMVHGAFSVV----TEADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTL 103 (1022)
T ss_pred cceEEEEeecCCcceeeeEEee----eeecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEe
Confidence 3888887777666555444443 333457899999999999999999999887777654 56799999999999999
Q ss_pred EcCC-CCHHHHHHHHHHhhhCCCCCHHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCC
Q 016092 165 DALK-TYVPEMVELLIDCVRNPVFLDWEVNEQL----------TKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPL 231 (395)
Q Consensus 165 ~~~~-~~~~~~l~ll~~~l~~p~f~~~~~~~~k----------~~~~~el~~~~~~p~~~~~~~l~~~~~--~~~~~~~~ 231 (395)
++-- +.+-++|....|-+.+|..++++|..+. ..+..|++..+..-.....+......| .++|....
T Consensus 104 Stag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eT 183 (1022)
T KOG0961|consen 104 STAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVET 183 (1022)
T ss_pred ecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceecc
Confidence 8766 5799999999999999999999988774 345666776666667777788888889 67888888
Q ss_pred CCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCC--CC---CCC----CCCC--C-C
Q 016092 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP--RE---EPK----SVYT--G-G 298 (395)
Q Consensus 232 ~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~--~~---~~~----~~~~--~-~ 298 (395)
.|-.+.|..++.+.+++||+++|.++||+++++| +++++++...+..-..++.... |+ .|. ..+. . -
T Consensus 184 GG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t 263 (1022)
T KOG0961|consen 184 GGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKEST 263 (1022)
T ss_pred CCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccc
Confidence 8889999999999999999999999999999999 9999999988766554433221 11 110 0111 1 1
Q ss_pred ceEEecCC-CcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHh-hCCCeEEEEee
Q 016092 299 DYRCQADS-GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN-EFPQVQSFSAF 375 (395)
Q Consensus 299 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe-~~g~~Y~~~a~ 375 (395)
..++..+. +..+..|.++|.++. ..+-....++.||-.+|....- +.+.+.+-| +..++-+++..
T Consensus 264 ~~tVefp~~Des~G~v~~aW~g~s-~sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~ 330 (1022)
T KOG0961|consen 264 VHTVEFPTDDESRGAVEVAWFGHS-PSDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFH 330 (1022)
T ss_pred eeeeecCCcccccceEEEEEcCCC-HHHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeee
Confidence 12333332 225788999999986 2244677899999999987532 445555444 23555555443
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.6e-11 Score=122.06 Aligned_cols=282 Identities=12% Similarity=0.142 Sum_probs=201.9
Q ss_pred CCcEEE-EecCC--C-CEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecceeEE
Q 016092 86 NGVKIA-SETSV--S-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (395)
Q Consensus 86 NG~~v~-~~~~~--~-~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (395)
.|.+++ .++.. . |...+.+.++.-.....+...-+..|...+++....++++ .....|.+++...+.+.+.
T Consensus 509 ~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y-----~A~~aG~sfs~~~~~~Gl~ 583 (937)
T COG1025 509 PNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSY-----QASLAGLSFSLAANSNGLD 583 (937)
T ss_pred CCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhh-----HHHhcceEEEeecCCCceE
Confidence 355555 44443 3 7888888888776666655566666677776544443333 3556788999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhcc
Q 016092 162 YSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240 (395)
Q Consensus 162 ~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~-~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 240 (395)
+++++.++.++.++..+.+.+..-.++++.|...|..+.++++. ...+|...+.+.+....-.+.+.+. -..+.++.
T Consensus 584 ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~--e~~~~l~~ 661 (937)
T COG1025 584 LTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSRE--ERRNALES 661 (937)
T ss_pred EEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHH--HHHHHhhh
Confidence 99999999999999999999999999999999999999999996 4578888777777666542222221 23356889
Q ss_pred CCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCC---CCCCCCCCCceEEe-cCCCcCceEEEE
Q 016092 241 LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE---EPKSVYTGGDYRCQ-ADSGDQLTHFVL 315 (395)
Q Consensus 241 i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~v~~ 315 (395)
++.+++..|....++.....+.+.| +..+++.++++.....++...... +......++..... .......+..++
T Consensus 662 v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i 741 (937)
T COG1025 662 VSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTWYRNPSVYLLKGGTRIFETVGGESDSANAAI 741 (937)
T ss_pred ccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcccCCCceeccCCCeeEeeeccCCccccccee
Confidence 9999999999999999999999999 999999998887655555433311 11112233333222 222113333444
Q ss_pred EeecCCCCCC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEec
Q 016092 316 AFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTV 392 (395)
Q Consensus 316 ~~~~~~~~~~-~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~ 392 (395)
.+..- ++ .++.+...++.+++. ..+|.+||.|.++.|-|.+++....++..+.|+++++
T Consensus 742 ~~~~~---~~~~~~~a~s~Ll~~l~~---------------~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~ 801 (937)
T COG1025 742 LYPQQ---YDEIKSSALSSLLGQLIH---------------PWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSN 801 (937)
T ss_pred Eeccc---cchHHHHHHHHHHHHHHh---------------HHhHHHhhhhhhcceEEEecceeecCccceEEEEeCC
Confidence 44433 33 455555668888887 7899999999999999999998887777777777764
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.3e-08 Score=106.03 Aligned_cols=300 Identities=14% Similarity=0.155 Sum_probs=211.4
Q ss_pred CCCCcCCCCCCCCCC---CCCCCCCC-CeEEEEcCCCcEEEEe-cCC--CCEEEEEEEEcccccCCCCCCCcHHHHHHHh
Q 016092 55 PSLDFPLPGVSLPPS---LPDYVEPG-KTKISTLPNGVKIASE-TSV--SPVASISLYVGCGSIYESPISFGTTHLLERM 127 (395)
Q Consensus 55 ~~~~~pl~~~~~~~~---~~~~~~~~-~~~~~~L~NG~~v~~~-~~~--~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l 127 (395)
+.+..|.|+..+|.. .+.+++.. ..+...=....++|.+ ++. -|.+.+.+.+.+-.....+....++.++..+
T Consensus 482 ~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~ 561 (974)
T KOG0959|consen 482 PELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRL 561 (974)
T ss_pred ccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHH
Confidence 457778777765531 11111111 1122222346678764 433 3688899999888888887888888888888
Q ss_pred hccCCCCCCHHHHHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-h
Q 016092 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-V 206 (395)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~-~ 206 (395)
+..-... ..-.....|..++.+.+.....+++.+.++++..+++.+.+++.+-..+++.|+..++.+..++++ .
T Consensus 562 l~d~l~E-----~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~ 636 (974)
T KOG0959|consen 562 LKDQLNE-----YLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHA 636 (974)
T ss_pred HHHHHhH-----HHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhh
Confidence 7443322 233356688899999999999999999999999999999999999999999999999999999998 6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCC
Q 016092 207 SNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (395)
Q Consensus 207 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~ 285 (395)
..+|...+.+.++..+-+..+... --.+.++.++.+++..|..+++++--+...+.| ++.++..++++.....+ ..
T Consensus 637 ~~~p~~~a~~~~~lll~~~~W~~~--e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~ 713 (974)
T KOG0959|consen 637 FDNPYQLANDYLLLLLEESIWSKE--ELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KS 713 (974)
T ss_pred hccHHHHHHHHHHHHhhccccchH--HHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hc
Confidence 677877776665554434444433 234667889999999999999999999999999 99999999876666555 22
Q ss_pred CCCC-CC-----------CCCCCCCceEEec--CCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCC
Q 016092 286 HPRE-EP-----------KSVYTGGDYRCQA--DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 351 (395)
Q Consensus 286 ~~~~-~~-----------~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg 351 (395)
..+. .+ .....|....... ....+.+.+.+.+.+-. .+..+...+.++.+++.
T Consensus 714 ~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~----------- 780 (974)
T KOG0959|consen 714 AAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK----------- 780 (974)
T ss_pred cCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc-----------
Confidence 1111 01 0112233332222 22235567777777632 56788889999999998
Q ss_pred CCcccHHHHHHHhhCCCeEEEEeeecCC
Q 016092 352 KGMYSRLYRRVLNEFPQVQSFSAFSNIY 379 (395)
Q Consensus 352 ~g~~srL~~~lRe~~g~~Y~~~a~~~~~ 379 (395)
..+|+.||.+.++.|-+++.....
T Consensus 781 ----ep~Fd~LRTkeqLGYiv~~~~r~~ 804 (974)
T KOG0959|consen 781 ----EPAFDQLRTKEQLGYIVSTGVRLN 804 (974)
T ss_pred ----cchHHhhhhHHhhCeEeeeeeeee
Confidence 678999997777777777665544
No 21
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.87 E-value=3.3e-08 Score=90.04 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCCHH
Q 016092 61 LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHL 138 (395)
Q Consensus 61 l~~~~~~~~~~~~~~~~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~ 138 (395)
||.+. .++++..++..+++...+ +|++|+..+.+ +.++++.++|+.....+. ..-...|+..++.. ||+++++.
T Consensus 54 LP~L~-~~Di~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e--~l~yl~Ll~~ll~~lgT~~~sy~ 129 (248)
T PF08367_consen 54 LPTLS-LSDIPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE--DLPYLPLLTDLLGELGTKNYSYE 129 (248)
T ss_dssp S-----GGGS-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC--CHCCHHHHHHHCCCS-BSSS-HH
T ss_pred Hcccc-HHhcCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH--HHHhHHHHHHHHHhCCCCCCCHH
Confidence 44444 225666666666665554 78999865444 669999999999865543 44455556666655 99999999
Q ss_pred HHHHHHHHcCCeeeEeec-----------ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHH
Q 016092 139 RIVREVEAIGGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE 191 (395)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~ 191 (395)
++...+..+.|++++++. .-.+.++++|+.++++++++++.+++.++.|++.+
T Consensus 130 el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 130 ELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp HHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred HHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHH
Confidence 999999999887777763 13689999999999999999999999999999754
No 22
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.1e-06 Score=84.75 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=170.6
Q ss_pred ecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhc------cCCCCC----CHHHHHHHHHHcCCeeeEee-----cc
Q 016092 93 ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAF------RSTRNR----SHLRIVREVEAIGGNVQASA-----SR 157 (395)
Q Consensus 93 ~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~------~gt~~~----s~~~l~~~l~~~g~~~~~~~-----~~ 157 (395)
.+-++..+.+..+++.-...- .....-.+...+++ .||-+- +.+++.+.+.......+..+ -+
T Consensus 556 ~h~ps~Fvel~fl~dss~i~~--sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~ 633 (1022)
T KOG0961|consen 556 HHCPSKFVELFFLLDSSNISI--SLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 (1022)
T ss_pred ccCchHHHhHhhhhccccCch--hhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccch
Confidence 444555666666666655542 23334444444433 465443 45666666655444333333 35
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCC--CCCC
Q 016092 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP--LLAP 234 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~--~~~~ 234 (395)
+.+.+.+++..++.+..++++..++....||++.+....++++.++..++.|...++.......+| ...+-.. .+.-
T Consensus 634 ~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~ 713 (1022)
T KOG0961|consen 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVL 713 (1022)
T ss_pred hheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999 5554332 1111
Q ss_pred hHHhccCCH----------HHHHHHHHhhccCCCcEEEEec-CC-HHHHHHHHHhhcCCCCCCCCCCCC---------CC
Q 016092 235 ESAINRLNS----------TLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPSIHPREEP---------KS 293 (395)
Q Consensus 235 ~~~l~~i~~----------~~l~~~~~~~~~~~~~~l~i~G-~~-~~~l~~~i~~~~~~lp~~~~~~~~---------~~ 293 (395)
++-++.|.. +.+++..+-....+.+.+-++| ++ .++...-....+.+..-..+.... .+
T Consensus 714 Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s 793 (1022)
T KOG0961|consen 714 EKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVS 793 (1022)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccc
Confidence 222333321 1222222212234678888999 54 222211111222211111110000 01
Q ss_pred -CCCCCc-eEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEE
Q 016092 294 -VYTGGD-YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQS 371 (395)
Q Consensus 294 -~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~ 371 (395)
.+..+. ..+..-++++.+.+....+....| .+++.+...++.++|+- |...+|+.||-. |+|||
T Consensus 794 ~e~gsssk~~~I~~p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLAYG 859 (1022)
T KOG0961|consen 794 LELGSSSKELLIGVPGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLAYG 859 (1022)
T ss_pred eeccCCcceeEecCCCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chhcc
Confidence 111122 222222233555555555555445 77999999999999996 447899999976 99999
Q ss_pred EEeeecCCCccceEEEEEEecC
Q 016092 372 FSAFSNIYNHSGMFGIQGTTVS 393 (395)
Q Consensus 372 ~~a~~~~~~~~g~f~i~~~~~p 393 (395)
+..+.... .+.+++.+++.|
T Consensus 860 anm~~~~d--~~~~~~~iyr~a 879 (1022)
T KOG0961|consen 860 ANMFVKPD--RKQITLSIYRCA 879 (1022)
T ss_pred ceeEEecc--CCEEEEEeecCC
Confidence 99887655 555555544444
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.10 E-value=0.00016 Score=69.11 Aligned_cols=185 Identities=19% Similarity=0.259 Sum_probs=110.1
Q ss_pred EEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecceeEE
Q 016092 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (395)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (395)
..|+||++|.+.+.-...+++++. +.|.-.+-.+-.|+|||+||++-+ ++...+ ..||+|++.++.
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILIs----FD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------hcccchhhhhhh
Confidence 468999999998887778888865 566666667889999999999732 233222 357889999998
Q ss_pred EEEEcCCCC-HHHHHHHHHHhhhC-----CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 016092 162 YSFDALKTY-VPEMVELLIDCVRN-----PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235 (395)
Q Consensus 162 ~~~~~~~~~-~~~~l~ll~~~l~~-----p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (395)
|=+.+.+.. ..++++-+...+.. ..|+...++....++.+|.- -.|-...+++.+.-. .++.+-+- |-.
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYY--FRnEvfHCmDvLtfL-~gGDLYNG--GRi 142 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYY--FRNEVFHCMDVLTFL-GGGDLYNG--GRI 142 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhh--hhhhHHHHHHHHHHh-cCCcccCC--chH
Confidence 888877754 34444444444432 34665555444444444432 122233344444222 13333222 444
Q ss_pred HHhccCC--HHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCC
Q 016092 236 SAINRLN--STLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 287 (395)
Q Consensus 236 ~~l~~i~--~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~ 287 (395)
+.+++++ .+-|.+-.++ ...+|+++.+=-++ +.++.++++.||.+|+-+.
T Consensus 143 ~ML~~l~~i~~mL~~RM~~-I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 143 DMLNNLNDIRNMLSNRMHR-IIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred HHHhhhHHHHHHHHHHHHh-hcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 5555542 1223333322 33455555444487 4577999999999998664
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=97.91 E-value=0.00051 Score=65.78 Aligned_cols=184 Identities=18% Similarity=0.264 Sum_probs=110.5
Q ss_pred EEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecceeEE
Q 016092 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (395)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (395)
..|+||++|...+.-...+++++. +.|.-.+-.+..|++|++||++-. ++...+ ..++++.+.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili~----fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------cccchhhhhhHh
Confidence 468999999998877777888864 556666666789999999999732 222222 356778888888
Q ss_pred EEEEcCCCC-HHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 016092 162 YSFDALKTY-VPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235 (395)
Q Consensus 162 ~~~~~~~~~-~~~~l~ll~~~l~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (395)
|-+.+.+.. ..+++.-+...+..+. |+.-.++....++.+|.- -.|-...+++.+.-.. ++.+-+- |-.
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYY--FRnEvfHCmDvLTfL~-gGDLYNG--GRi 142 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYY--FRNEVFHCMDVLTFLG-GGDLYNG--GRI 142 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhh--hhhhhHHHHHHHHHhc-CCcccCC--chH
Confidence 777776643 3566777766666554 444444444444433332 1222334444443222 3333232 444
Q ss_pred HHhccCCHHHHHHHHHhh---ccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCC
Q 016092 236 SAINRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 287 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~---~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~ 287 (395)
+.|+++ +++.+...+. ...+|+++.+=-++ +.++.++++.||.+|+-+.
T Consensus 143 ~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 143 DMLDNL--NDVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 556554 3333333222 34455555544487 4577999999999998664
No 25
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.096 Score=49.55 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=115.6
Q ss_pred CcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhc-----cCCCCCCHHHHHHHHHHcC-C----eee-Eee
Q 016092 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAF-----RSTRNRSHLRIVREVEAIG-G----NVQ-ASA 155 (395)
Q Consensus 87 G~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~-----~gt~~~s~~~l~~~l~~~g-~----~~~-~~~ 155 (395)
|-.|-..+...|.+.+.+.+.+-+-..++ .-...+...++. .|++......|.+.+.... + +|+ +|.
T Consensus 258 gsEvR~rdd~lP~a~~AiAVEG~~w~~pD--~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~Yk 335 (467)
T KOG0960|consen 258 GSEVRVRDDDLPLAHIAIAVEGVSWAHPD--YFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYK 335 (467)
T ss_pred CceeeecCCCCchhheeeeEecCCcCCcc--HHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccc
Confidence 66777788889999999999877666552 323333344432 4666666666766665432 2 121 222
Q ss_pred cceeEEEEEEc-CCCCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 016092 156 SREQMGYSFDA-LKTYVPEMVELLIDCVRN--PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (395)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~l~ll~~~l~~--p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (395)
+.--.++++-| ....++.++..+..-... ...++.|+++.|..++..+-...+.....+.+.-.+.+. +... |.
T Consensus 336 DTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri--~l 413 (467)
T KOG0960|consen 336 DTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRI--PL 413 (467)
T ss_pred cccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcC--Ch
Confidence 33345666666 555666666655433322 268899999999999998886655444456666666664 3322 21
Q ss_pred CCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CC
Q 016092 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (395)
Q Consensus 232 ~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~ 267 (395)
---...|+.++.++++++..+++-.....++.+| +.
T Consensus 414 ~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 414 AELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 1234679999999999999999887888999999 54
No 26
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.11 Score=49.32 Aligned_cols=162 Identities=16% Similarity=0.075 Sum_probs=106.8
Q ss_pred EEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC--------HHHH-------HHHHHHcCCeeeEeecceeEEEE
Q 016092 99 VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS--------HLRI-------VREVEAIGGNVQASASREQMGYS 163 (395)
Q Consensus 99 ~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s--------~~~l-------~~~l~~~g~~~~~~~~~~~~~~~ 163 (395)
...+.+-+.+-+..++ +.-....+. |+..|.+.+| +.+| ..++....+.-+.+.+.--++++
T Consensus 264 ltHv~lg~Eg~~~~de--D~v~~avLq-~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi~ 340 (472)
T KOG2067|consen 264 LTHVVLGFEGCSWNDE--DFVALAVLQ-MLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIY 340 (472)
T ss_pred eeeeeEeeccCCCCCh--hHHHHHHHH-HHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEEe
Confidence 6677777777666655 233333444 4434444444 2222 23345555666667777789999
Q ss_pred EEcCCCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccC
Q 016092 164 FDALKTYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRL 241 (395)
Q Consensus 164 ~~~~~~~~~~~l~ll~~~l~~p--~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i 241 (395)
++++++...++++++..-+.+- ..++++++|.|.+++..+-+....-.-.+.|.-++.+-. ....+.---.+.|+++
T Consensus 341 ~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~-g~rk~p~e~~~~Ie~l 419 (472)
T KOG2067|consen 341 ASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTT-GERKPPDEFIKKIEQL 419 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhc-cCcCCHHHHHHHHHhc
Confidence 9999999999999998766553 388999999999999988865544444455555555532 1112211233678899
Q ss_pred CHHHHHHHHHhhccCCCcEEEEec
Q 016092 242 NSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 242 ~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
+.+|+.++-++.++. +.+++..|
T Consensus 420 t~~DI~rva~kvlt~-~p~va~~G 442 (472)
T KOG2067|consen 420 TPSDISRVASKVLTG-KPSVAAFG 442 (472)
T ss_pred CHHHHHHHHHHHhcC-CceeccCC
Confidence 999999999998863 45666666
No 27
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=95.04 E-value=1.1 Score=44.41 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=83.5
Q ss_pred HHHHHH-HHcCCeeeEeec------ceeEEEEEEcCCCCHHHHHHHH----HHhhhCC--CCCHHHHHHHHHHHHHHHHh
Q 016092 139 RIVREV-EAIGGNVQASAS------REQMGYSFDALKTYVPEMVELL----IDCVRNP--VFLDWEVNEQLTKVKSEISE 205 (395)
Q Consensus 139 ~l~~~l-~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~l~ll----~~~l~~p--~f~~~~~~~~k~~~~~el~~ 205 (395)
.|.+.+ +..|..++++.. .....+...+..++.+...+.+ .+..... .+++++++..+..+...+-.
T Consensus 291 rLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~ 370 (438)
T COG0612 291 RLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLL 370 (438)
T ss_pred HHHHHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhh
Confidence 344444 445776666531 1234444444433333333333 3333333 38899999999999998888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CC
Q 016092 206 VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (395)
Q Consensus 206 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~ 267 (395)
..++|...+........+..+.... .--.+.|+.++.+++.++.++++.+.+++++++| ..
T Consensus 371 ~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 371 SLDSPSSIAELLGQYLLLGGSLITL-EELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred ccCCHHHHHHHHHHHHHhcCCccCH-HHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 8888888776666555543322211 1245778999999999999999999999999999 54
No 28
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=92.72 E-value=0.76 Score=48.07 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=51.8
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEE
Q 016092 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (395)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~ 388 (395)
..+.+.+.++.|. .+..+.++..+|++++. .++|++||.+.++.|.|+|.+....+..-+.+.
T Consensus 614 ~e~alllf~p~~~--~~~~~~aa~rlla~l~~---------------~~f~qrlRve~qlGY~v~~~~~~~~~~~gllf~ 676 (696)
T TIGR02110 614 GEQALLLFCPLPT--ADVASEAAWRLLAQLLE---------------PPFFQRLRVELQLGYVVFCRYRRVADRDGLLFA 676 (696)
T ss_pred CCcEEEEEecCCC--CCHHHHHHHHHHHHHhc---------------hhHHHHHHHhhccceEEEEeeEEcCCcceeEEE
Confidence 4566777888886 56788999999999999 789999999999999999988766544333344
Q ss_pred EE
Q 016092 389 GT 390 (395)
Q Consensus 389 ~~ 390 (395)
++
T Consensus 677 ~Q 678 (696)
T TIGR02110 677 LQ 678 (696)
T ss_pred Ee
Confidence 44
No 29
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=87.49 E-value=4.3 Score=33.88 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=64.9
Q ss_pred CcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHH-HcCC--eeeEee----ccee
Q 016092 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGG--NVQASA----SREQ 159 (395)
Q Consensus 87 G~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~--~~~~~~----~~~~ 159 (395)
+..+.....+.+...+.+.+.+...... .......++..++..+ ....|...+. ..+. .+.++. +...
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKDS-KDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGTS-TTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred cccccccccccccccccccccccccccc-chhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceE
Confidence 3444444444355555566665554222 3556777888888665 2334666665 4443 333332 2245
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 016092 160 MGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKV 199 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~l~ll~~~l~~---p~f~~~~~~~~k~~~ 199 (395)
+.+.+.+.+++++++++.+.+.+.. -.|++++|++.|+.+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7788888888888887777666533 349999999988764
No 30
>COG5023 Tubulin [Cytoskeleton]
Probab=45.85 E-value=16 Score=34.80 Aligned_cols=28 Identities=36% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCCCCCCcccHHHHHHHhhCC----CeEEEEe
Q 016092 347 AGGPGKGMYSRLYRRVLNEFP----QVQSFSA 374 (395)
Q Consensus 347 ~g~pg~g~~srL~~~lRe~~g----~~Y~~~a 374 (395)
+||-|.||.+.|.++||++++ +.|++.-
T Consensus 140 gGGTGSG~GslLLerl~~eypkK~~~tfSV~P 171 (443)
T COG5023 140 GGGTGSGLGSLLLERLREEYPKKIKLTFSVFP 171 (443)
T ss_pred cCcCcccHHHHHHHHHHHhcchhheeEEEecc
Confidence 578899999999999999876 4666653
No 31
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=38.59 E-value=1.1e+02 Score=19.87 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHHhh
Q 016092 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (395)
Q Consensus 137 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l 182 (395)
...+...++..++.+.-..-.+...+.+..+.++.+.+.+.|.+..
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 4568888999999887766666799999999999999999888764
No 32
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=38.02 E-value=28 Score=33.27 Aligned_cols=44 Identities=30% Similarity=0.465 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCCC--------CCCCCCCCcccHHHHHHHhhCC----CeEEEEee
Q 016092 332 LTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAF 375 (395)
Q Consensus 332 l~vl~~lLgg~~sf--------~~g~pg~g~~srL~~~lRe~~g----~~Y~~~a~ 375 (395)
+.++..=..|..+| =|||-|.||+|.|.++|++++. .+|++...
T Consensus 119 mdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn 174 (448)
T KOG1374|consen 119 MDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPN 174 (448)
T ss_pred HHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccC
Confidence 45555545566665 4799999999999999999764 46766644
No 33
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=36.68 E-value=41 Score=28.55 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=32.7
Q ss_pred HHhccCCHHHHHHHHHhhc-cCCCcEEEEec-CCHHHHHHHHHh
Q 016092 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~-~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
=.|++++.+++++..+..- .+.+..+.++| ++.+.+.++++.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 3467889999999998543 35669999999 999999888754
No 34
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.70 E-value=95 Score=17.97 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 016092 173 EMVELLIDCVRNPVFLDWEVNEQLTKVK 200 (395)
Q Consensus 173 ~~l~ll~~~l~~p~f~~~~~~~~k~~~~ 200 (395)
+-++.|.+.+..-..++++|++.|..++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4577888889999999999999998775
No 35
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=34.23 E-value=48 Score=32.82 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.7
Q ss_pred CCCCCCCCcccHHHHHHHhhCCC
Q 016092 346 SAGGPGKGMYSRLYRRVLNEFPQ 368 (395)
Q Consensus 346 ~~g~pg~g~~srL~~~lRe~~g~ 368 (395)
-+||-|-|+.++|.+.||++++-
T Consensus 140 l~GGTGSGlgs~l~e~l~d~y~~ 162 (434)
T cd02186 140 FGGGTGSGFGSLLLERLSVDYGK 162 (434)
T ss_pred cCCCcchhHHHHHHHHHHHhcCc
Confidence 35678999999999999999874
No 36
>PTZ00010 tubulin beta chain; Provisional
Probab=30.11 E-value=43 Score=33.30 Aligned_cols=29 Identities=38% Similarity=0.756 Sum_probs=22.3
Q ss_pred CCCCCCCcccHHHHHHHhhCC--CeEEEEee
Q 016092 347 AGGPGKGMYSRLYRRVLNEFP--QVQSFSAF 375 (395)
Q Consensus 347 ~g~pg~g~~srL~~~lRe~~g--~~Y~~~a~ 375 (395)
+||-|-|++++|.+.||++++ ..+++..+
T Consensus 140 ~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~ 170 (445)
T PTZ00010 140 GGGTGSGMGTLLISKLREEYPDRIMMTFSVF 170 (445)
T ss_pred CCCccccHHHHHHHHHHhhCCccceeeeEec
Confidence 567888999999999999987 34444444
No 37
>PLN00220 tubulin beta chain; Provisional
Probab=28.02 E-value=60 Score=32.33 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=19.8
Q ss_pred CCCCCCCCcccHHHHHHHhhCCC
Q 016092 346 SAGGPGKGMYSRLYRRVLNEFPQ 368 (395)
Q Consensus 346 ~~g~pg~g~~srL~~~lRe~~g~ 368 (395)
-+||-|-|+.++|.+.||++++-
T Consensus 139 l~GGTGSG~gs~l~~~l~~~y~~ 161 (447)
T PLN00220 139 LGGGTGSGMGTLLISKIREEYPD 161 (447)
T ss_pred cCCCccccHHHHHHHHHHHhccc
Confidence 45778999999999999999863
No 38
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=27.96 E-value=1.7e+02 Score=27.54 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=49.1
Q ss_pred hhccCCCCCCHHHHHHHHHHcCCeeeEeecceeE-EEEEEcCC--CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 016092 127 MAFRSTRNRSHLRIVREVEAIGGNVQASASREQM-GYSFDALK--TYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199 (395)
Q Consensus 127 l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~ 199 (395)
..|.|+-.++..++.+.+...|+.+..++++... .+.+.... .++.++-++ -=|.++|++|.+....+
T Consensus 238 ~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~-----gi~ii~e~~f~~ll~~~ 308 (313)
T PRK06063 238 VALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL-----GVPVLDEAAFLELLRAV 308 (313)
T ss_pred EEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc-----CCccccHHHHHHHHHhh
Confidence 4567877789999999999999999999887533 33333322 567776553 55788888887776544
No 39
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=27.27 E-value=89 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=28.9
Q ss_pred ccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHH
Q 016092 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (395)
Q Consensus 239 ~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i 275 (395)
.=|+.+++.++.++ .|.++.++++| ..++++.+.+
T Consensus 131 gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 131 GYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhC
Confidence 44678999999975 79999999999 7778887765
No 40
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=27.10 E-value=78 Score=31.28 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.8
Q ss_pred CCCCCCCcccHHHHHHHhhCCCe
Q 016092 347 AGGPGKGMYSRLYRRVLNEFPQV 369 (395)
Q Consensus 347 ~g~pg~g~~srL~~~lRe~~g~~ 369 (395)
+||-|-|+.++|.+.||++++-.
T Consensus 139 ~GGTGSG~gs~l~e~l~d~y~~~ 161 (425)
T cd02187 139 GGGTGSGMGTLLISKIREEYPDR 161 (425)
T ss_pred CCCccccHHHHHHHHHHHhcCCc
Confidence 57788999999999999998643
No 41
>PLN00221 tubulin alpha chain; Provisional
Probab=26.98 E-value=56 Score=32.55 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.5
Q ss_pred CCCCCCCCcccHHHHHHHhhCCCe
Q 016092 346 SAGGPGKGMYSRLYRRVLNEFPQV 369 (395)
Q Consensus 346 ~~g~pg~g~~srL~~~lRe~~g~~ 369 (395)
-+||-|-|++++|.+.||++++-.
T Consensus 141 l~GGtGSGlgs~~le~l~d~y~~~ 164 (450)
T PLN00221 141 VGGGTGSGLGSLLLERLSVDYGKK 164 (450)
T ss_pred cCCCccchHHHHHHHHHHHhcccc
Confidence 356789999999999999998754
No 42
>PTZ00335 tubulin alpha chain; Provisional
Probab=26.67 E-value=59 Score=32.37 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCCC--------CCCCCCCcccHHHHHHHhhCCC
Q 016092 331 TLTVLQMLLGGGGSFS--------AGGPGKGMYSRLYRRVLNEFPQ 368 (395)
Q Consensus 331 al~vl~~lLgg~~sf~--------~g~pg~g~~srL~~~lRe~~g~ 368 (395)
.+..+...+..-.++. +||-|-|+.++|.+.||++++-
T Consensus 118 i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~ 163 (448)
T PTZ00335 118 CLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (448)
T ss_pred HHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccc
Confidence 3445555554333432 6788999999999999999864
No 43
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=25.35 E-value=1.8e+02 Score=19.33 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCeeeEee-cceeEEEEEEcCCCCHHHHHHHHHHhhh
Q 016092 139 RIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVR 183 (395)
Q Consensus 139 ~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ll~~~l~ 183 (395)
++-+.+...|.++.... +.....+++.+..++.+.+++.|++.+.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 56666788888776543 1234778888888889999998888765
No 44
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.17 E-value=2e+02 Score=19.09 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCeeeEeec-ceeEEEEEEcCCCCHHHHHHHHHHhhhC
Q 016092 139 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVRN 184 (395)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ll~~~l~~ 184 (395)
++-+.+...|.++..... .....+++....++.+.+++.+++.+.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 455667777887765542 2346778888889999999999887753
No 45
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=24.32 E-value=2e+02 Score=18.83 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHHhh
Q 016092 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (395)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l 182 (395)
.++-+.+...+.++...... ...+++....++.+.+++.|...+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 18 AKMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 35666778888888777643 366778888888888888888765
No 46
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=23.77 E-value=1.2e+02 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHH
Q 016092 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (395)
Q Consensus 240 ~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i 275 (395)
=|+.+++.++.++ .|.++.++++| -.++++.+++
T Consensus 114 li~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 114 YLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhC
Confidence 4677889988865 78999999999 7778888765
No 47
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=23.14 E-value=1.6e+02 Score=27.17 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHh
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
=-|++++.+++++..+..-.+.+..+-++| ++.+.+...++.
T Consensus 212 ImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 212 IMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred EEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 346889999999999887567789999999 999998887654
No 48
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.63 E-value=1.6e+02 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=32.2
Q ss_pred HhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHh
Q 016092 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
.+++++.+++++..+.. ..+..+-++| ++.+.+.++++.
T Consensus 233 ~LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 233 MLDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred EeCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 46788999999999843 4588999999 999999888754
No 49
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.61 E-value=2e+02 Score=18.72 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHHhh
Q 016092 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (395)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l 182 (395)
.++-+.+...+.++...... ...+++....++.+++++.+.+.+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 18 AKMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 35666778888887777643 366777778888888888888766
No 50
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.32 E-value=1.7e+02 Score=27.36 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=32.8
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHh
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
=.+++++.+++++..+.. +.+..+-++| ++.+.+.++++.
T Consensus 229 ImLDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 229 VLLDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred EEECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 346889999999988743 4588999999 999999888764
No 51
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.12 E-value=1.3e+02 Score=25.70 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHH
Q 016092 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVA 275 (395)
Q Consensus 239 ~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i 275 (395)
.=|+.+++.++.++ .|.++.++++| -.++++.+.+
T Consensus 131 gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 131 GLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhC
Confidence 34678899999886 68999999999 7778887765
No 52
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=21.91 E-value=2.1e+02 Score=19.64 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=27.9
Q ss_pred HHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHH
Q 016092 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180 (395)
Q Consensus 140 l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~ 180 (395)
+.+.|...|.++..-. .+...++-...++++++++.|.+
T Consensus 27 i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 27 IFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 4445677888876666 55666777778999999998864
No 53
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.84 E-value=1.7e+02 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=31.6
Q ss_pred HhccCCHHHHHHHHHhhcc---CCCcEEEEec-CCHHHHHHHHHh
Q 016092 237 AINRLNSTLLEEFVAENYT---GPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~---~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
.+++++.+++++..+..-. +++..+.++| ++.+.+.++++.
T Consensus 207 ~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 207 MLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred EECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 4677888888888765421 3578999999 999999888764
No 54
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.89 E-value=1.7e+02 Score=27.20 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHh
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
=.+++++.+++++..+.. +.+..+-++| ++.+.+.++++.
T Consensus 221 ImLDnmspe~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 221 IMLDNMSLEQIEQAITLI--AGRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred EEECCCCHHHHHHHHHHh--cCceEEEEECCCCHHHHHHHHhc
Confidence 346889999999999732 4588999999 999999888754
Done!