Query 016092
Match_columns 395
No_of_seqs 336 out of 1462
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 2E-52 6.8E-57 416.3 37.0 316 77-394 4-325 (475)
2 3eoq_A Putative zinc protease; 100.0 8.3E-49 2.8E-53 382.4 36.1 300 79-394 2-305 (406)
3 3hdi_A Processing protease; CA 100.0 4.2E-48 1.4E-52 379.0 35.3 300 79-394 2-305 (421)
4 1pp9_A Ubiquinol-cytochrome C 100.0 1.1E-47 3.8E-52 378.9 36.0 313 77-395 12-330 (446)
5 1hr6_B Beta-MPP, mitochondrial 100.0 2.9E-47 9.8E-52 375.4 37.5 315 76-395 4-329 (443)
6 1pp9_B Ubiquinol-cytochrome C 100.0 4.7E-46 1.6E-50 366.1 38.9 313 74-394 19-331 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 6.2E-46 2.1E-50 366.4 36.1 305 77-394 5-321 (445)
8 3gwb_A Peptidase M16 inactive 100.0 7.6E-45 2.6E-49 356.9 34.2 304 76-394 11-321 (434)
9 3amj_B Zinc peptidase inactive 100.0 1E-43 3.4E-48 348.1 37.2 303 77-395 2-315 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 8.2E-43 2.8E-47 342.0 30.8 300 80-393 2-310 (431)
11 1q2l_A Protease III; hydrolase 100.0 1.4E-40 4.7E-45 356.9 33.7 306 75-393 17-336 (939)
12 3d3y_A Uncharacterized protein 100.0 1.5E-39 5.2E-44 318.0 30.8 294 82-394 6-324 (425)
13 3cww_A Insulysin, insulin-degr 100.0 2.2E-38 7.6E-43 341.4 31.8 304 75-392 31-351 (990)
14 3go9_A Insulinase family prote 100.0 1.4E-38 4.6E-43 317.6 26.0 289 77-389 24-336 (492)
15 3cx5_B Cytochrome B-C1 complex 100.0 2.3E-37 8E-42 295.6 27.0 272 88-392 1-276 (352)
16 3s5m_A Falcilysin; M16 metallo 100.0 6.6E-37 2.3E-41 328.9 28.2 304 76-393 84-467 (1193)
17 2fge_A Atprep2;, zinc metallop 100.0 7.8E-37 2.7E-41 329.5 24.9 300 78-394 37-371 (995)
18 2fge_A Atprep2;, zinc metallop 100.0 1.4E-27 4.7E-32 257.5 22.2 293 77-394 552-876 (995)
19 1q2l_A Protease III; hydrolase 99.9 5.7E-26 2E-30 243.5 21.7 291 79-394 500-803 (939)
20 3cww_A Insulysin, insulin-degr 99.9 1.2E-23 4E-28 226.7 25.3 288 80-393 520-827 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 1.9E-24 6.7E-29 232.4 15.3 286 85-394 724-1070(1193)
22 3ih6_A Putative zinc protease; 99.2 8.7E-11 3E-15 101.9 9.2 72 309-394 23-94 (197)
23 3ih6_A Putative zinc protease; 98.4 4.5E-06 1.5E-10 71.8 13.7 160 98-265 23-192 (197)
24 1hr6_B Beta-MPP, mitochondrial 98.1 0.00017 6E-09 69.7 19.2 168 94-265 241-426 (443)
25 3cx5_A Cytochrome B-C1 complex 98.1 7.5E-05 2.6E-09 71.9 16.3 175 89-267 222-414 (431)
26 3hdi_A Processing protease; CA 98.1 2E-05 6.7E-10 76.0 11.8 165 94-267 229-405 (421)
27 3eoq_A Putative zinc protease; 98.1 4.4E-05 1.5E-09 73.2 14.2 159 98-265 234-402 (406)
28 3amj_B Zinc peptidase inactive 98.1 0.00013 4.3E-09 70.3 17.1 164 96-265 239-412 (424)
29 1pp9_A Ubiquinol-cytochrome C 98.0 0.00017 5.9E-09 69.9 15.7 167 94-265 245-426 (446)
30 3gwb_A Peptidase M16 inactive 97.9 3.5E-05 1.2E-09 74.4 8.7 163 96-265 246-419 (434)
31 1hr6_A Alpha-MPP, mitochondria 97.8 0.00051 1.7E-08 67.3 16.9 167 96-266 240-437 (475)
32 1pp9_B Ubiquinol-cytochrome C 97.7 0.001 3.5E-08 64.1 16.5 165 96-265 249-428 (439)
33 3ami_A Zinc peptidase; alpha/b 97.5 0.00084 2.9E-08 65.0 13.4 141 120-265 267-420 (445)
34 3d3y_A Uncharacterized protein 97.2 0.0013 4.4E-08 63.0 10.1 161 96-265 251-420 (425)
35 3go9_A Insulinase family prote 96.9 0.01 3.6E-07 58.3 13.5 162 94-265 261-445 (492)
36 3cx5_B Cytochrome B-C1 complex 39.2 15 0.0005 33.3 2.5 76 159-267 268-344 (352)
37 1l7b_A DNA ligase; BRCT, autos 37.1 48 0.0017 23.8 4.5 65 128-197 14-79 (92)
38 2k6g_A Replication factor C su 32.4 71 0.0024 23.8 4.9 58 134-196 46-105 (109)
39 2ebu_A Replication factor C su 27.9 85 0.0029 23.5 4.7 63 129-196 30-95 (112)
40 3lh2_S 4E10_1VI7A_S0_002_N (T8 26.9 1.3E+02 0.0045 20.2 5.3 47 138-184 20-66 (76)
41 3ov5_A VIRB7 (XAC2622), unchar 25.9 25 0.00085 24.5 1.2 44 222-265 31-74 (85)
42 2l4w_A Uncharacterized protein 24.8 35 0.0012 25.2 1.9 44 222-265 61-104 (120)
43 2cok_A Poly [ADP-ribose] polym 22.9 69 0.0024 24.0 3.3 61 128-193 17-81 (113)
44 3gnn_A Nicotinate-nucleotide p 20.9 84 0.0029 28.1 4.0 39 237-277 234-273 (298)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=2e-52 Score=416.31 Aligned_cols=316 Identities=36% Similarity=0.583 Sum_probs=289.9
Q ss_pred CCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec
Q 016092 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (395)
++++.++|+||++|++.+.+.+.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++.+|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57889999999999988877889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 016092 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (395)
++++.|++++++++++.+|++|.+++.+|.|++++|+++|..+.+|+++..++|...+.+.++..+| ++||+++.+|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 999999999999
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCC-CCCCCCCCCCceEEecC----CCcCc
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL 310 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~ 310 (395)
+.|++++.++|++||+++|+|+||+|+++|+++++++++++++|+.||....+ ..+.+.+.++..++... .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865433 11223344444444421 33478
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEE
Q 016092 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (395)
Q Consensus 311 ~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~ 390 (395)
+++.++|++++ .+++|.+++.|++.|||++++|++|||||||+++||++||++.|++|++++++..+.+.|.|+|+++
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999875 4788999999999999999999999999999999999999999999999999888888999999999
Q ss_pred ecCC
Q 016092 391 TVSH 394 (395)
Q Consensus 391 ~~p~ 394 (395)
++|+
T Consensus 322 ~~~~ 325 (475)
T 1hr6_A 322 CIPQ 325 (475)
T ss_dssp ECGG
T ss_pred eCHH
Confidence 9885
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=8.3e-49 Score=382.41 Aligned_cols=300 Identities=20% Similarity=0.254 Sum_probs=271.4
Q ss_pred eEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecc
Q 016092 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (395)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (395)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|+||++++..++.+.++.+|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 578999999999976655 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 016092 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 236 (395)
+++.|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.+++.+| +|||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred HhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCceEEecCCCcCceEEE
Q 016092 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADSGDQLTHFV 314 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 314 (395)
+|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.||..+.+.... ....++...+..+ ..+|+++.
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~~ 239 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYE-KARALYLV 239 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECT-TCSSEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecC-CccceEEE
Confidence 99999999999999999999999999999 999999999999999998654332211 1222223333322 22799999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 315 ~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
++|+++. ..++|.+++.|++.+|||+. +|||+++||+ .|++|++++++..+.+.|+|.+++.++|+
T Consensus 240 ~~~~~~~--~~~~d~~~l~vl~~iLgg~~-----------~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~ 305 (406)
T 3eoq_A 240 ALFPGVA--YQEEARFPGQVLAHLLGEEG-----------SGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPA 305 (406)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHHCTT-----------TSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGG
T ss_pred EEecCCC--CCCchHHHHHHHHHHhCCCc-----------chHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcc
Confidence 9999986 67889999999999999863 4999999999 89999999999888899999999999886
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=4.2e-48 Score=379.01 Aligned_cols=300 Identities=28% Similarity=0.423 Sum_probs=273.1
Q ss_pred eEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecc
Q 016092 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (395)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (395)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++|+++||+|+||++++..++.+.++.+|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976555 5799999999999999998999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 016092 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (395)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 236 (395)
+++.|++++++++++.+|+++.+++.+|.|++++|+++|..++++++...++|...+.+.+.+.+| +|||+++.+|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC-CCCCCCCCceEEecCCCcCceEEE
Q 016092 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGGDYRCQADSGDQLTHFV 314 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 314 (395)
.|++++.++|++||+++|.|+||+|+++| ++ ++++++++++|+.||....+.. ..+.+.+.......+. +++++.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 9999999999999987654322 2222333333333334 899999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 315 ~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
++|+++. .+++|.+++.|++.+|||+ ++||||++|||+.|++|++++++..+.+.|.|.+++.++|+
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 9999986 5789999999999999976 45999999999999999999998888899999999999986
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.1e-47 Score=378.94 Aligned_cols=313 Identities=29% Similarity=0.490 Sum_probs=280.2
Q ss_pred CCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec
Q 016092 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (395)
+.++..+|+||++|++.+.+.+.+++.+++++|++.|+++..|++|+++||+|+||++++..++.+.++.+|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999987777789999999999999999899999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 016092 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (395)
.+++.|++++++++++.+|+++.+++.+|.|++++|+++|..+.++++...++|...+.+.+++.+| +|||+++.+|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC--C--CCCCCCCceEEecCCCcCc
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYRCQADSGDQL 310 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 310 (395)
+.|++++.++|++||+++|+|+||+|+++| +++++++++++++|+.|+....+.. . .+.+.+....+..+ +.++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHRED-GLPL 250 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEET-TSSS
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecC-Cccc
Confidence 999999999999999999999999999999 9999999999999999986543321 1 22233333433322 2379
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEE
Q 016092 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (395)
Q Consensus 311 ~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~ 390 (395)
+++.++|++++ .+++|.+++.|++.+||++.+ +.| +|+|++||||++||++ |++|++++++..+.+.|.|.+++.
T Consensus 251 ~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~~-glay~~~s~~~~~~~~g~~~i~~~ 325 (446)
T 1pp9_A 251 AHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAATN-KLCQSFQTFNICYADTGLLGAHFV 325 (446)
T ss_dssp EEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHHH-TCCSEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHhc-CCeEEEEEecccCCCCeEEEEEEE
Confidence 99999999986 578999999999999997654 333 6788999999999975 899999998877788899999999
Q ss_pred ecCCC
Q 016092 391 TVSHC 395 (395)
Q Consensus 391 ~~p~~ 395 (395)
++|++
T Consensus 326 ~~~~~ 330 (446)
T 1pp9_A 326 CDHMS 330 (446)
T ss_dssp ECTTS
T ss_pred ECHHH
Confidence 99863
No 5
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=2.9e-47 Score=375.43 Aligned_cols=315 Identities=28% Similarity=0.423 Sum_probs=281.0
Q ss_pred CCCeEEEEcCCCcEEEEecCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEe
Q 016092 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~~~-~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (395)
.++++.++|+||++|++.+++.+ .+++.+++++|++.|+++..|++|+++||+|+||++++..++.+.++.+|++++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 36789999999999998777665 99999999999999998999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 016092 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (395)
++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|..+.++++...++|...+.+.+++.+| +|||+++.+|
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999899
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC------CCCCCCCceEEecCC
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQADS 306 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~------~~~~~~~~~~~~~~~ 306 (395)
+.+.|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.||....+... .+.+.+....+.. .
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKE-N 242 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEEC-T
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEecc-C
Confidence 99999999999999999999999999999999 99999999999999999865432211 2223333333332 2
Q ss_pred CcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEE
Q 016092 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (395)
Q Consensus 307 ~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~ 386 (395)
+.++++|.++|++++ .+++|.+++.|++.+||++. ...|+|+|++||||++|||+.|++|++++++..+.+.|.|.
T Consensus 243 ~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 338999999999986 58899999999999998743 23456788999999999999999999999888788899999
Q ss_pred EEEEec--CCC
Q 016092 387 IQGTTV--SHC 395 (395)
Q Consensus 387 i~~~~~--p~~ 395 (395)
++++|+ |++
T Consensus 319 i~~~~~~~~~~ 329 (443)
T 1hr6_B 319 MYIVTDSNEHN 329 (443)
T ss_dssp EEEEEETTTCC
T ss_pred EEEEecCChhH
Confidence 999999 863
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=4.7e-46 Score=366.10 Aligned_cols=313 Identities=32% Similarity=0.534 Sum_probs=281.4
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeE
Q 016092 74 VEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (395)
Q Consensus 74 ~~~~~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (395)
+..++++.++|+||++|++.+...+.+++.+++++|++.|+++..|++|+++||++.||++++..++.+.++.+|+++++
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na 98 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSV 98 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEE
Confidence 34568899999999999976557789999999999999999899999999999999999999999999999999999999
Q ss_pred eecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCC
Q 016092 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233 (395)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 233 (395)
+++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+|.+||+++.+|
T Consensus 99 ~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g 178 (439)
T 1pp9_B 99 TSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178 (439)
T ss_dssp EECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSC
T ss_pred EecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999988789998889
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCceEEecCCCcCceEE
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHF 313 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~l~~~i~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 313 (395)
+.+.|++++.++|++||+++|.|+||+++++|-+++++.++++++|+ ||.........+.+.++...+..+. +++++
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 255 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHA 255 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEE
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEE
Confidence 99999999999999999999999999999999888999999999998 9755433222223334444444444 78999
Q ss_pred EEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecC
Q 016092 314 VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVS 393 (395)
Q Consensus 314 ~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p 393 (395)
.++|+.++ .++++.+++.|++.+|++++.|++|| ||++|||++||++.|++|++++++..+.+.|.|.++++++|
T Consensus 256 ~~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~ 330 (439)
T 1pp9_B 256 ALVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQA 330 (439)
T ss_dssp EEEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEG
T ss_pred EEEecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCH
Confidence 99999986 57899999999999999999899887 78899999999999999999998877778999999999998
Q ss_pred C
Q 016092 394 H 394 (395)
Q Consensus 394 ~ 394 (395)
+
T Consensus 331 ~ 331 (439)
T 1pp9_B 331 A 331 (439)
T ss_dssp G
T ss_pred H
Confidence 5
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=6.2e-46 Score=366.38 Aligned_cols=305 Identities=22% Similarity=0.323 Sum_probs=270.1
Q ss_pred CCeEEEEcCCCcEEEEecC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEee
Q 016092 77 GKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~-~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (395)
++++.++|+||++|++.+. ..+.+.+.+++++|++.|+++..|++|+++||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 4788999999999996544 467999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 016092 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (395)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~-~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (395)
+.+.+.|++++++++++.+|+++.+++.+|.|++++|++++..+.+|++ ...++|...+.+.+++.+| +|||+++.+|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6788999999999999999 9999999999
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC--C-CCCCCCc-eEEecCCCc
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGGD-YRCQADSGD 308 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~--~-~~~~~~~-~~~~~~~~~ 308 (395)
+.++|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.||....+... . +...+.. ..+..+.
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA-- 242 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--
Confidence 99999999999999999999999999999999 99999999999999999865432211 1 2222222 2233333
Q ss_pred CceEEEEEeecCCC--CCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecC-CCc-cce
Q 016092 309 QLTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGM 384 (395)
Q Consensus 309 ~~~~v~~~~~~~~~--~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~-~~~-~g~ 384 (395)
++++|.++|+++.. +.++++.+++.|++.+|||+. +|||+++||++.|++|++++++.. ..+ .|.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~-----------~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~ 311 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYD-----------GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGL 311 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSST-----------TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEE
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCc-----------chHHHHHHhhcCCcEEEEEeeccccccCCCCe
Confidence 78999999999841 322789999999999999764 499999999999999999998874 456 899
Q ss_pred EEEEEEecCC
Q 016092 385 FGIQGTTVSH 394 (395)
Q Consensus 385 f~i~~~~~p~ 394 (395)
|.|++.+.|+
T Consensus 312 ~~i~~~~~~~ 321 (445)
T 3ami_A 312 FILEGVPSKG 321 (445)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEECCC
Confidence 9999999886
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=7.6e-45 Score=356.95 Aligned_cols=304 Identities=17% Similarity=0.172 Sum_probs=274.9
Q ss_pred CCCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEe
Q 016092 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (395)
.++++.++|+||++|++.+.+ .+.+++.+++++|+..+ ++..|++|+++||+++||++++..++.+.++.+|++++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 357899999999999976555 58999999999999999 7899999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcCCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 016092 155 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (395)
++.+++.|++++++++ ++.+++++.+++.+|.|++++|+++|+.+++++++..++|...+.+.+++.+| ++||+++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCCceEEecCCCc
Q 016092 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGGDYRCQADSGD 308 (395)
Q Consensus 232 ~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~ 308 (395)
.|+.+.|++++.++|++||+++|.|+||+++++| ++++++.++++++|+.||..+.+..+. ..+.++...+..+.
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS-- 247 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--
Confidence 9999999999999999999999999999999999 999999999999999998764332211 12223344444444
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEE
Q 016092 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (395)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~ 388 (395)
.++++.++|+.+. .+++|.+++.|++.+||++ |+++|||++||++.|++|++++++..+.+.|.|.++
T Consensus 248 ~~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~ 315 (434)
T 3gwb_A 248 SQTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMIN 315 (434)
T ss_dssp SEEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEE
T ss_pred CceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEE
Confidence 8999999999886 6889999999999999975 256999999999999999999999888889999999
Q ss_pred EEecCC
Q 016092 389 GTTVSH 394 (395)
Q Consensus 389 ~~~~p~ 394 (395)
++++|+
T Consensus 316 ~~~~~~ 321 (434)
T 3gwb_A 316 LQTRAE 321 (434)
T ss_dssp EEEEGG
T ss_pred Eecchh
Confidence 999986
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1e-43 Score=348.05 Aligned_cols=303 Identities=18% Similarity=0.252 Sum_probs=270.9
Q ss_pred CCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCC----CCCHHHHHHHHHHcCCee
Q 016092 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (395)
++++.++|+||++|++.+++ .+.+++.+++++|+..|+++..|++|+++||+++||+ +++..++.+.++.+|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999975554 6799999999999999999999999999999999999 999999999999999999
Q ss_pred eEeecceeEEEEEEcCCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCC
Q 016092 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (395)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~--~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~ 228 (395)
+++++.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+.+.+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999889999999999999999 99999
Q ss_pred CCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC-CCC-CCCCCceEEecC
Q 016092 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKS-VYTGGDYRCQAD 305 (395)
Q Consensus 229 ~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~-~~~-~~~~~~~~~~~~ 305 (395)
.+. +.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. +.+ ...+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986543221 111 122223333334
Q ss_pred CCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceE
Q 016092 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (395)
Q Consensus 306 ~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f 385 (395)
. +++++.++|+++. .++++.+++.|++.+||++ |+++|||++||++.|++|++++++..+.+.|.|
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~ 305 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLF 305 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeE
Confidence 4 8999999999876 5789999999999999974 256999999999999999999998888888999
Q ss_pred EEEEEecCCC
Q 016092 386 GIQGTTVSHC 395 (395)
Q Consensus 386 ~i~~~~~p~~ 395 (395)
.++++++|++
T Consensus 306 ~i~~~~~~~~ 315 (424)
T 3amj_B 306 QIGFETRAEK 315 (424)
T ss_dssp EEEEEEESTT
T ss_pred EEEEEeCccc
Confidence 9999999863
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=8.2e-43 Score=342.02 Aligned_cols=300 Identities=19% Similarity=0.294 Sum_probs=263.3
Q ss_pred EEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecce
Q 016092 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (395)
Q Consensus 80 ~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (395)
+.++|+||++|++.+++ .+.+++.+++++|++.|+++..|++|+++||+++||.+ ..++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 45789999999976554 57999999999999999999999999999999998743 24788999999999999
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHhc-CCCCCCCCCC
Q 016092 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLA 233 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ll~~~l~~p~---f~~~~~~~~k~~~~~el~~~~~~p-~~~~~~~l~~~~~-~~~~~~~~~~ 233 (395)
++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ...+.+.+++.+| ++||+++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888899 9999999999999 9999999899
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCceEEecCCCcCce
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLT 311 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (395)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... ++.+.+....+..+ +.+++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKA 233 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCce
Confidence 99999999999999999999999999999999 99999999999988889865432211 12223333333332 33789
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCC-cccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEE
Q 016092 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (395)
Q Consensus 312 ~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g-~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~ 390 (395)
++.++|+.++ .++++.+++.|++.+|+++ ++||||+| +++||+++||++ |++|++++++..+.+.|.|.++++
T Consensus 234 ~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe~-gl~y~v~~~~~~~~~~g~~~i~~~ 307 (431)
T 3cx5_A 234 WISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFSTA 307 (431)
T ss_dssp EEEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHTT-TCCSEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHhc-CceeeEeEeecccCCCceEEEEEe
Confidence 9999999986 5789999999999999975 45888885 789999999975 999999999877778999999999
Q ss_pred ecC
Q 016092 391 TVS 393 (395)
Q Consensus 391 ~~p 393 (395)
++|
T Consensus 308 ~~~ 310 (431)
T 3cx5_A 308 TRN 310 (431)
T ss_dssp ESC
T ss_pred eCc
Confidence 998
No 11
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.4e-40 Score=356.85 Aligned_cols=306 Identities=14% Similarity=0.161 Sum_probs=265.0
Q ss_pred CCCCeEEEEcCCCcEEEEecC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC-HHHHHHHHHHcCCeee
Q 016092 75 EPGKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (395)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~-~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (395)
++..++..+|+||++|++.+. ..+.+.+.+++++|+++|+++..|++|++|||+|+||++++ ..++.+.++.+|+.+|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 344688999999999997554 46789999999999999999999999999999999999997 4699999999999999
Q ss_pred EeecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 016092 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (395)
++|+.+++.|++++++++++.+|+++.+++.+|.|+++++++++..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHHhcc----CCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCCC--ceEE
Q 016092 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTGG--DYRC 302 (395)
Q Consensus 232 ~~~~~~l~~----i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~--~~~~~~~~--~~~~ 302 (395)
+|+.++|++ ++.++|++||++||+|+||+|+|+| +++++++++++++|+.||....+.+ ..+.+... ...+
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 9999999999999999986543221 11222221 2333
Q ss_pred ecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeee--cCCC
Q 016092 303 QADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NIYN 380 (395)
Q Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~--~~~~ 380 (395)
...+..+++++.++|+.|. .....+..++.+++.+||++++ ++|+.+||+ .|++|+++++. ..+.
T Consensus 257 ~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~ 323 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDN-NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNG 323 (939)
T ss_dssp EECCSSCCCEEEEEEEEEC-CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTS
T ss_pred EEEeCCCCcEEEEEEEcCC-hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCC
Confidence 3333337899999999986 2223366788999999998643 899999996 59999999975 3456
Q ss_pred ccceEEEEEEecC
Q 016092 381 HSGMFGIQGTTVS 393 (395)
Q Consensus 381 ~~g~f~i~~~~~p 393 (395)
+.|.|.|++.+.|
T Consensus 324 ~~g~f~i~~~~~~ 336 (939)
T 1q2l_A 324 NSGVLAISASLTD 336 (939)
T ss_dssp SEEEEEEEEEECH
T ss_pred CceEEEEEEEECh
Confidence 7899999998765
No 12
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-39 Score=318.04 Aligned_cols=294 Identities=14% Similarity=0.151 Sum_probs=253.9
Q ss_pred EEcCCCcEEEEecC-CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCC-CHHHHHHHHHHc-CCeeeEeecce
Q 016092 82 STLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (395)
Q Consensus 82 ~~L~NG~~v~~~~~-~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (395)
++|+||++|++.+. ..+.+++.+++++|+..++ .|++|+++||++.||+++ +..++.+.++.+ |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 88999999997666 4689999999999997654 799999999999999998 889999999998 99999999988
Q ss_pred e----EEEEEEcCCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 016092 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (395)
Q Consensus 159 ~----~~~~~~~~~~-------~~~~~l~ll~~~l~~p~-----f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~ 222 (395)
. +.|+++++++ +++.+++++.+++.+|. |++++|+++|+.+.++++...++|...+.+.+++.+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 7 6899999987 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCC
Q 016092 223 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG 297 (395)
Q Consensus 223 ~--~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~ 297 (395)
| +|||+++..|+.+.|++++.++|++||+++|.|+|++++++| ++++++++++ ++|+ ||........ ...+.+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999988999999999999999999999999999999999 9999999999 9999 9865432211 111112
Q ss_pred -CceEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeee
Q 016092 298 -GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 376 (395)
Q Consensus 298 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~ 376 (395)
....+....+.+++++.++|+.+.. .++++.+++.|++++||||. ++|||++||++.|++|++++++
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~~-----------~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGFP-----------HSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTST-----------TSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCCh-----------hhHHHHHHHHhcCeEEEEeccc
Confidence 1222222223389999999998622 57899999999999999764 4999999999999999999987
Q ss_pred cCCCccceEEEEEEecCC
Q 016092 377 NIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 377 ~~~~~~g~f~i~~~~~p~ 394 (395)
... .|.|.|++.++|+
T Consensus 309 ~~~--~g~~~i~~~~~~~ 324 (425)
T 3d3y_A 309 DTF--RGFMTVQTGIDGK 324 (425)
T ss_dssp ETT--TTEEEEEEEECGG
T ss_pred ccc--CceEEEEEecCHh
Confidence 653 8999999999885
No 13
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2.2e-38 Score=341.44 Aligned_cols=304 Identities=17% Similarity=0.183 Sum_probs=260.3
Q ss_pred CCCCeEEEEcCCCcEEEEe-cCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCH-HHHHHHHHHcCCeee
Q 016092 75 EPGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (395)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~-~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (395)
+...++..+|+||++|++. +...+.+++.++|++|++.|+++..|++|++|||+|.||++++. .++.+.++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 3457899999999999965 44567999999999999999999999999999999999999987 799999999999999
Q ss_pred EeecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 016092 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (395)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999889999999899988899 99999999
Q ss_pred CCChHHhccC-------CHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCC--c
Q 016092 232 LAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGG--D 299 (395)
Q Consensus 232 ~~~~~~l~~i-------~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~~--~ 299 (395)
.|+.+.|..+ +.++|++||++||+|+||+|+++| +++++++++++++|+.||....+... .+++... .
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999865432211 1122111 1
Q ss_pred eEEecCCCcCceEEEEEeecCCCCCC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecC
Q 016092 300 YRCQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI 378 (395)
Q Consensus 300 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~ 378 (395)
..+...+..+++++.++|+.+. .. ..+..++.+++.+||+++ .++ |+.+||++ |++|++++++..
T Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~lLg~~~----------~~s-l~~~Lr~~-g~~~~~~a~~~~ 336 (990)
T 3cww_A 271 QLYKIVPIKDIRNLYVTFPIPD--LQKYYKSNPGHYLGHLIGHEG----------PGS-LLSELKSK-GWVNTLVGGQKA 336 (990)
T ss_dssp EEEEECCSSSCCEEEEEEEECC--CGGGTTTCHHHHHHHHHTCCS----------TTC-HHHHHHHT-TSCSCEEEEEEE
T ss_pred eEEEEEECCCCcEEEEEEEcCC--hhhhhhhCHHHHHHHHhcCCC----------CCc-HHHHHHHC-CCcceeeecccc
Confidence 2222222236899999999986 33 456788999999998632 125 67799974 999999988764
Q ss_pred -CCccceEEEEEEec
Q 016092 379 -YNHSGMFGIQGTTV 392 (395)
Q Consensus 379 -~~~~g~f~i~~~~~ 392 (395)
+.+.|.|.|++.+.
T Consensus 337 ~~~~~~~f~i~~~~~ 351 (990)
T 3cww_A 337 GARGFMFFIINVDLT 351 (990)
T ss_dssp EETTEEEEEEEEECC
T ss_pred CCCCccEEEEEEEEC
Confidence 45679999998854
No 14
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.4e-38 Score=317.65 Aligned_cols=289 Identities=17% Similarity=0.143 Sum_probs=238.5
Q ss_pred CCeEEEEcCCCcEEEEe-cC--CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHH----HcCC
Q 016092 77 GKTKISTLPNGVKIASE-TS--VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~-~~--~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (395)
+.++.++|+||++|++. +. +.+.+++.+++++|+++|+++..|++||++||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999854 32 35699999999999999999999999999999999999999999998665 4799
Q ss_pred eeeEeecceeEEEEEEcCC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CC
Q 016092 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 225 (395)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~ 225 (395)
.++++++.+++.|++++++ ++++.+|++|.+++.+|.|++++|+++|..+.++++...++|....+ ...++ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999999 57999999999999999999999999999887777777777765433 23455 66
Q ss_pred CCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCC--C-CCCCCCCceE
Q 016092 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDYR 301 (395)
Q Consensus 226 ~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~--~-~~~~~~~~~~ 301 (395)
+++++..+ +.|++++.++|++||+++|+|+||+|+++| +++++++++++++|+.||.....+. + .++..+....
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66666433 568999999999999999999999999999 9999999999999999986543211 1 1122223333
Q ss_pred -EecCCCcCceEEEEEeecCCCCCCCcchHHH------HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHh--hCCCeEEE
Q 016092 302 -CQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSF 372 (395)
Q Consensus 302 -~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al------~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe--~~g~~Y~~ 372 (395)
+..+. +|++|.++|+.+. ..++|..++ .|++.+|+ ++|+.+||+ +.|++|++
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~ 319 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGF 319 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEE
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccc
Confidence 33333 8999999999986 466766555 89999999 799999999 89999999
Q ss_pred EeeecCCCccceEEEEE
Q 016092 373 SAFSNIYNHSGMFGIQG 389 (395)
Q Consensus 373 ~a~~~~~~~~g~f~i~~ 389 (395)
++++....+.|.|.+.+
T Consensus 320 ~s~~~~~~~~~~~~i~~ 336 (492)
T 3go9_A 320 DCRVQYQRAQCAIHLNT 336 (492)
T ss_dssp EEEEETTEEEEEEEEEE
T ss_pred CchhhhhhcceEEEEEc
Confidence 99887766666666544
No 15
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.3e-37 Score=295.62 Aligned_cols=272 Identities=22% Similarity=0.327 Sum_probs=236.0
Q ss_pred cEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeecceeEEEEEEcC
Q 016092 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (395)
Q Consensus 88 ~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (395)
++|+.++.+.+.+++++++++|+++|+ ..|++|+++||+|+||++++..++.+.++.+|++++++++.+++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 578888888899999999999999974 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHH
Q 016092 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (395)
Q Consensus 168 ~~~~~~~l~ll~~~l~~p~f~~~~~~-~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l 246 (395)
+++++.+|+++.+++.+|.|++++|+ ++|+.++++++...++|...+.+.+++.+|.|||+++.. .+.|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998864 688999999999
Q ss_pred HHHHHhhccCCCcEEEEecCCHHHHHHHH-HhhcCCCCCCCCCCC--CCCCCCCCceEEecCCCcCceEEEEEeecCCCC
Q 016092 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 323 (395)
Q Consensus 247 ~~~~~~~~~~~~~~l~i~G~~~~~l~~~i-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (395)
++||+++|.|+||+++++|++++++++++ +++|+.||....+.. ..+.+.++...+.. . .++.+.++++
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~----- 228 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-I--GDSVAAIGIP----- 228 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-S--SSEEEEEEEE-----
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-C--CCceEEEecC-----
Confidence 99999999999999999999999999999 899999986543221 11223344444322 2 5676666543
Q ss_pred CCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEec
Q 016092 324 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTV 392 (395)
Q Consensus 324 ~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~ 392 (395)
.++++.+++.|++.+|| . +||++.|++ +++++..+.+.|.|.++++++
T Consensus 229 ~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~ 276 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ 276 (352)
T ss_dssp ECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES
T ss_pred CCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeC
Confidence 35579999999999998 3 578888887 555555567889999999986
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=6.6e-37 Score=328.87 Aligned_cols=304 Identities=15% Similarity=0.100 Sum_probs=251.5
Q ss_pred CCCeEEEEcCCCcEEEEecCCCC-EEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHH--cCCeee
Q 016092 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQ 152 (395)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~~~-~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~~ 152 (395)
.+.++...|+||++|++.+.+.+ .+. ..|..|.+.++++..|++|++|||+|+||++++..++...+.. +|+.+|
T Consensus 84 ~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lN 161 (1193)
T 3s5m_A 84 MTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLN 161 (1193)
T ss_dssp EEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEE
T ss_pred ccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEE
Confidence 34678889999999996444432 222 2345577788889999999999999999999999999999998 899999
Q ss_pred EeecceeEEEEEEcCC-CCHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHHH
Q 016092 153 ASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LTKVK 200 (395)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~~~~~l~ll~~~l~~p~f~~~~--~~~~-----------------------------k~~~~ 200 (395)
++|+.|++.|.+++++ ++++.+++++.|++.+|.|++++ |.++ |..+.
T Consensus 162 A~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~ 241 (1193)
T 3s5m_A 162 AYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVY 241 (1193)
T ss_dssp EEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHH
T ss_pred eEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHH
Confidence 9999999999999888 89999999999999999999877 7776 46899
Q ss_pred HHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhh
Q 016092 201 SEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 278 (395)
Q Consensus 201 ~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~ 278 (395)
+|++...++|..++.+.+.+.+| +|||+++..|++++|.+++.++|++||++||+|+|++|+++| +++++++++++++
T Consensus 242 ~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~ 321 (1193)
T 3s5m_A 242 NEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY 321 (1193)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCCCCC------CCCCCCCCC-ceEEec--CCCcCceEEEEEeecCCC--C-CC---------------------
Q 016092 279 LSDLPSIHPRE------EPKSVYTGG-DYRCQA--DSGDQLTHFVLAFELPGG--W-HK--------------------- 325 (395)
Q Consensus 279 ~~~lp~~~~~~------~~~~~~~~~-~~~~~~--~~~~~~~~v~~~~~~~~~--~-~~--------------------- 325 (395)
|+.|+..+... ...+...+. .+.+.. ..+.+|+++.++|.+++. . .+
T Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~ 401 (1193)
T 3s5m_A 322 LGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSH 401 (1193)
T ss_dssp HTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCC
T ss_pred hccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccc
Confidence 99998543311 111122222 222221 123478999999999741 0 12
Q ss_pred --------CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEE-eeecCCCccceEEEEE-EecC
Q 016092 326 --------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQG-TTVS 393 (395)
Q Consensus 326 --------~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~-a~~~~~~~~g~f~i~~-~~~p 393 (395)
++|.+++.||+.||+||.+ ||||++||++ |++|+++ +++......+.|.|++ .+++
T Consensus 402 ~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~ 467 (1193)
T 3s5m_A 402 SSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKR 467 (1193)
T ss_dssp CSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECT
T ss_pred cccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCCh
Confidence 4789999999999998654 9999999985 9999998 6777777788999987 4554
No 17
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.8e-37 Score=329.49 Aligned_cols=300 Identities=14% Similarity=0.088 Sum_probs=249.4
Q ss_pred CeEEEEcCCCcEEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHH-HHHHH-HcCCeeeEee
Q 016092 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVE-AIGGNVQASA 155 (395)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l-~~~l~-~~g~~~~~~~ 155 (395)
.++..+|+||++|++.+.+.... ++.+|++.++++..|++|++|||+|+||++++..++ .+.+. ..|+.+|++|
T Consensus 37 ~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T 112 (995)
T 2fge_A 37 AILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFT 112 (995)
T ss_dssp EEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEE
T ss_pred EEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeE
Confidence 46668899999999765554322 356788899999999999999999999999998774 45454 4688999999
Q ss_pred cceeEEEEEEcC-CCCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHhhcCChHHHHHHH
Q 016092 156 SREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLEA 217 (395)
Q Consensus 156 ~~~~~~~~~~~~-~~~~~~~l~ll~~~l~~p~f--~~~~~~~~---------------k~~~~~el~~~~~~p~~~~~~~ 217 (395)
+.|++.|.+.+. .++++.+++++.|++.+|.| ++++|+++ +..+.+|++...++|..++.+.
T Consensus 113 ~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~ 192 (995)
T 2fge_A 113 YPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRI 192 (995)
T ss_dssp CSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHH
Confidence 999999999876 46999999999999999999 99999999 8899999999999999999999
Q ss_pred HHHHhc-CCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCC--CCCC--CCCC
Q 016092 218 IHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIHP--REEP 291 (395)
Q Consensus 218 l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp--~~~~--~~~~ 291 (395)
+.+.+| +|||+++.+|+.++|.+++.++|++||++||+|+||+|+++| +|+++++++++++|+.|+ .... ....
T Consensus 193 ~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 272 (995)
T 2fge_A 193 AQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKF 272 (995)
T ss_dssp HHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCC
T ss_pred HHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCC
Confidence 999999 999999999999999999999999999999999999999999 999999999999999998 4221 1111
Q ss_pred CCCCCCCc---eEEec---CCCcCceEEEEEeecCCCCC-CCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHh
Q 016092 292 KSVYTGGD---YRCQA---DSGDQLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN 364 (395)
Q Consensus 292 ~~~~~~~~---~~~~~---~~~~~~~~v~~~~~~~~~~~-~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe 364 (395)
.+.+.... ..+.. +...+++++.++|+.|. +. ++++..++.||+.+|+++. +|+|+++||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~e 340 (995)
T 2fge_A 273 QKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILLE 340 (995)
T ss_dssp CCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHHH
T ss_pred CCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHHh
Confidence 22232221 12221 33347999999999986 32 3588999999999999754 4999999998
Q ss_pred hCCCeEEEEee-ecCCCccceEEEEE-EecCC
Q 016092 365 EFPQVQSFSAF-SNIYNHSGMFGIQG-TTVSH 394 (395)
Q Consensus 365 ~~g~~Y~~~a~-~~~~~~~g~f~i~~-~~~p~ 394 (395)
+ |++|+++++ +..+.+.|.|.|.+ .++++
T Consensus 341 ~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 371 (995)
T 2fge_A 341 S-GLGEALVSSGLSDELLQPQFGIGLKGVSEE 371 (995)
T ss_dssp T-TSCSEECSCEEECSSSSCEEEEEEEEECGG
T ss_pred c-CCCcceeeccccccccCeEEEEEEEeCCHH
Confidence 6 999999876 66566689999864 56654
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.95 E-value=1.4e-27 Score=257.45 Aligned_cols=293 Identities=10% Similarity=0.008 Sum_probs=228.5
Q ss_pred CCeEEEEcCCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCCHHHHHHHHHHcCCeeeE-
Q 016092 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA- 153 (395)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~- 153 (395)
.+++.. +.||++|++.+.. .+++++.+++++|+. +++..+..+++.++++. ||+++++.+|.+.++...|.+++
T Consensus 552 ~~~~~~-~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEVG-DINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEEE-ESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCceee-ecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 344544 4899999976555 569999999999886 44678899999888875 99999999999999966555555
Q ss_pred ----eecc-----eeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 016092 154 ----SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (395)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~-~~~~~k~~~~~el~~~~-~~p~~~~~~~l~~~~ 222 (395)
+++. +.+.|++++++++++.+++++.+++.+|.|+++ +|++++++++.++++.. +++..++.+.++...
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 889999999999999999999999999999999 99999999999999875 567777777777664
Q ss_pred c-CCCCCCCC-----CCCh--------HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCH-HHHHHHHHhhcCCC-CCC
Q 016092 223 Y-SGALANPL-----LAPE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 285 (395)
Q Consensus 223 ~-~~~~~~~~-----~~~~--------~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~-~~l~~~i~~~~~~l-p~~ 285 (395)
+ .++++... .... +.++.+ .++|++||+++|++++++++++| +++ +++.++++++|+.| |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 4 45543211 1111 457788 99999999999999999999999 985 89999999999999 754
Q ss_pred CCCCCCCCCCCCCceEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhh
Q 016092 286 HPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE 365 (395)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~ 365 (395)
..+..+ ..+..+........+....++..+++... +++++.+++.|+++|||+ ++||++||+
T Consensus 788 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe- 849 (995)
T 2fge_A 788 SGGLVT-WDGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV- 849 (995)
T ss_dssp SSCSCC-CCCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-
T ss_pred CCCCCc-ccccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-
Confidence 332211 11111111111112235667766776654 588999999999999995 689999999
Q ss_pred CCCeEEEEeeecCCCccceEE-EEEEecCC
Q 016092 366 FPQVQSFSAFSNIYNHSGMFG-IQGTTVSH 394 (395)
Q Consensus 366 ~g~~Y~~~a~~~~~~~~g~f~-i~~~~~p~ 394 (395)
.|++|++++++.. .|.|+ ++++++|+
T Consensus 850 ~g~aYg~~s~~~~---~G~~~~~~s~~dp~ 876 (995)
T 2fge_A 850 SGGAYGGFCDFDS---HSGVFSYLSYRDPN 876 (995)
T ss_dssp TTCCSEEEEEEET---TTTEEEEEEESBSC
T ss_pred cCCCcccceEeCC---CccEEEEEEEcCCC
Confidence 7999999998765 59999 99999985
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=5.7e-26 Score=243.46 Aligned_cols=291 Identities=10% Similarity=0.035 Sum_probs=221.1
Q ss_pred eEEEEcCCCcEEEEecCC-C---CEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEe
Q 016092 79 TKISTLPNGVKIASETSV-S---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (395)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~---~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (395)
.+.++|+||++|++++++ . |.+.+.+.+.+|...++++..|+++++..|+..|+.++ .+ ..+..|.+++++
T Consensus 500 p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~---~~--~~~l~G~~~~~~ 574 (939)
T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL---SN--QASVGGISFSTN 574 (939)
T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH---HH--HHHHTTEEEEEE
T ss_pred CEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH---hh--HHHHcCcEEEEe
Confidence 467889999999987665 2 49999999999998887777899999999998776543 22 344467778888
Q ss_pred ecceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCCCCC
Q 016092 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGYSGALANPLLA 233 (395)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~~ 233 (395)
. .+.+.+++++.+++++.+|+++.+.+.+|.|++++|+++|+++++++++. .++|...+.+.++..+|.+ + .+..+
T Consensus 575 ~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~~ 651 (939)
T 1q2l_A 575 A-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRDE 651 (939)
T ss_dssp E-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHHH
T ss_pred e-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHHH
Confidence 8 88999999999999999999999999999999999999999999999987 5579998999998888732 2 33346
Q ss_pred ChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCC-ceEEecCCCcC
Q 016092 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGG-DYRCQADSGDQ 309 (395)
Q Consensus 234 ~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 309 (395)
+.+.|++++.++|++||+++|.+.+++++++| ++.++++++++++++.|+......... .....+ ...+....+..
T Consensus 652 ~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (939)
T 1q2l_A 652 RRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNST 731 (939)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCCC
Confidence 78899999999999999999999999999999 999999999999998887543221111 111222 22232232223
Q ss_pred ceEE-EEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecC-CCccce-EE
Q 016092 310 LTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNHSGM-FG 386 (395)
Q Consensus 310 ~~~v-~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~-~~~~g~-f~ 386 (395)
++.+ .++|+.+. .+.++.+.+.+|..++. ++||++||++.|++|+++++... ....|+ |.
T Consensus 732 ~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~ 794 (939)
T 1q2l_A 732 DSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFL 794 (939)
T ss_dssp CEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEE
T ss_pred CceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEEE
Confidence 4545 56665542 23344455555555444 99999999999999999998763 334563 66
Q ss_pred EEE-EecCC
Q 016092 387 IQG-TTVSH 394 (395)
Q Consensus 387 i~~-~~~p~ 394 (395)
|++ .++|+
T Consensus 795 i~s~~~~p~ 803 (939)
T 1q2l_A 795 LQSNDKQPS 803 (939)
T ss_dssp EEESSSCHH
T ss_pred EECCCCCHH
Confidence 666 45553
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.92 E-value=1.2e-23 Score=226.74 Aligned_cols=288 Identities=10% Similarity=0.067 Sum_probs=223.1
Q ss_pred EEEEcCCCcEEEEecCC---CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec
Q 016092 80 KISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (395)
Q Consensus 80 ~~~~L~NG~~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (395)
..+++.||++|+..+++ .|...+.+.+.++...++++..++++++..|+..+ ++..++...+ .|.+++++++
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~~ 594 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQNT 594 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEEE
T ss_pred eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEEc
Confidence 56788999999976555 45777777776766666767788999999988663 3555665555 4888999999
Q ss_pred ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 016092 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGYSGALANPLLAPE 235 (395)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (395)
.+.+.+++++++++++.+++++.+++.+|.|++++|+++|+.++..+++... +|...+.+.+...++.+++... +..
T Consensus 595 ~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~--~~~ 672 (990)
T 3cww_A 595 IYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKD--ELK 672 (990)
T ss_dssp TTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHH--HHH
T ss_pred CCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHH--HHH
Confidence 9999999999999999999999999999999999999999999999998776 8999999999998885555432 467
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHH---HHhhcCCCCCCCC-CC-----CCCCC-CCCCceEEe-
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLPSIHP-RE-----EPKSV-YTGGDYRCQ- 303 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~---i~~~~~~lp~~~~-~~-----~~~~~-~~~~~~~~~- 303 (395)
+.|++|+.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|.... +. ..... ..+....+.
T Consensus 673 ~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (990)
T 3cww_A 673 EALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQ 752 (990)
T ss_dssp HHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEe
Confidence 889999999999999999999999999999 999998887 6778876653211 10 01111 122222221
Q ss_pred cCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccc
Q 016092 304 ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG 383 (395)
Q Consensus 304 ~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g 383 (395)
......++.+.+++..+. .+.++.+++.||+.+|. ++||.+||++.|++|++++.+... .|
T Consensus 753 ~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~--~g 813 (990)
T 3cww_A 753 RNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRA--NG 813 (990)
T ss_dssp ECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEE--TT
T ss_pred cCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEee--CC
Confidence 233336677777777653 57889999999999997 999999999999999999987654 33
Q ss_pred eEEE----EEEecC
Q 016092 384 MFGI----QGTTVS 393 (395)
Q Consensus 384 ~f~i----~~~~~p 393 (395)
.+++ +++++|
T Consensus 814 ~~~~~~~vqs~~dp 827 (990)
T 3cww_A 814 IQGLRFIIQSEKPP 827 (990)
T ss_dssp EEEEEEEEEESSCH
T ss_pred EEEEEEEEeCCCCH
Confidence 3333 555555
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.91 E-value=1.9e-24 Score=232.41 Aligned_cols=286 Identities=12% Similarity=0.085 Sum_probs=207.7
Q ss_pred CCCcEEEEecCC-CCEEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCCHHHHHHHHHHcCCeeeEeec------
Q 016092 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQASAS------ 156 (395)
Q Consensus 85 ~NG~~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (395)
.||++|+..+.+ ++++++.++|+.|... .+..++..|+..++.+ ||+++++.++.+.++.++|.++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999865544 6799999999999754 3466778888887765 99999999999999999999888863
Q ss_pred ----------ceeEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhc-
Q 016092 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGY- 223 (395)
Q Consensus 157 ----------~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~-~~~~k~~~~~el~~~-~~~p~~~~~~~l~~~~~- 223 (395)
...+.++++++.++++++++|+.+++.+|.|++.+ +.+.+++++..+.+. .++...++...+.+.++
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34579999999999999999999999999999865 777777777766653 33344445544444443
Q ss_pred CCCCCCCCCCChHH--------------hccCCHHHHHHHHHhhccCCCcEEEEec-CC-HHHHHHHHHhhcCCCCC---
Q 016092 224 SGALANPLLAPESA--------------INRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS--- 284 (395)
Q Consensus 224 ~~~~~~~~~~~~~~--------------l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~-~~~l~~~i~~~~~~lp~--- 284 (395)
.++|.....| .+. ++.+ .++|++++++.|+++|+++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 3333221111 112 2223 67899999999999999999999 64 57777666666655531
Q ss_pred -CCC----------CCC-C--------CCCC-CCCceEEecCCCcCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCC
Q 016092 285 -IHP----------REE-P--------KSVY-TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGG 343 (395)
Q Consensus 285 -~~~----------~~~-~--------~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~ 343 (395)
... ... . ...+ ...........+.++.+++.+++... ..++|++++.|++.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~-- 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK--PGEYLDPSFTVIVAALKN-- 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCC--CCCCchHHHHHHHHHHCc--
Confidence 000 000 0 0000 11112222222338899999988776 688999999999999995
Q ss_pred CCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEEEEecCC
Q 016092 344 SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTVSH 394 (395)
Q Consensus 344 sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~~~~~p~ 394 (395)
+|||++||||.| |||+++++. ..|.|.++++++|+
T Consensus 1036 ------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp~ 1070 (1193)
T 3s5m_A 1036 ------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDPN 1070 (1193)
T ss_dssp ------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBSC
T ss_pred ------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCCC
Confidence 899999999855 999999976 58999999999986
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.16 E-value=8.7e-11 Score=101.88 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=66.2
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEeeecCCCccceEEEE
Q 016092 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (395)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~d~~al~vl~~lLgg~~sf~~g~pg~g~~srL~~~lRe~~g~~Y~~~a~~~~~~~~g~f~i~ 388 (395)
+++++.++|++|+ .+++|.+++.|++.+|+||. +||||++|||+ |++|++++++..+.+.|.|.|+
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg~-----------sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~ 88 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADTP-----------SSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFG 88 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSST-----------TSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCCC-----------CchHHHHHHhc-CceEEEEeccccccCCeEEEEE
Confidence 8999999999997 67899999999999999764 49999999997 9999999998888899999999
Q ss_pred EEecCC
Q 016092 389 GTTVSH 394 (395)
Q Consensus 389 ~~~~p~ 394 (395)
+.++|+
T Consensus 89 ~~~~~~ 94 (197)
T 3ih6_A 89 AQLQPG 94 (197)
T ss_dssp EECCTT
T ss_pred EEECCC
Confidence 999886
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.41 E-value=4.5e-06 Score=71.78 Aligned_cols=160 Identities=5% Similarity=-0.044 Sum_probs=109.8
Q ss_pred CEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEee------cceeEEEEEEcCCC-C
Q 016092 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA------SREQMGYSFDALKT-Y 170 (395)
Q Consensus 98 ~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~-~ 170 (395)
+...+.+.+.+....++ ..-...++..++..|.. ..|.+.|...|...+++. +...+.+++.+.++ +
T Consensus 23 ~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 44455555555544332 34456777777765533 345555544454443332 22356778888777 6
Q ss_pred HHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHH
Q 016092 171 VPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLE 247 (395)
Q Consensus 171 ~~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~ 247 (395)
.+++++.+.+.+.+ -.++++++++.|..++..+....+++...+........++.+. ......+.|+++|.+|+.
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~dv~ 174 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDDVQ 174 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHHHH
Confidence 99999988777754 4699999999999999999988888888777666555542111 111234678999999999
Q ss_pred HHHHhhccCCCcEEEEec
Q 016092 248 EFVAENYTGPRMVLAASG 265 (395)
Q Consensus 248 ~~~~~~~~~~~~~l~i~G 265 (395)
++.+++|.+++++++++|
T Consensus 175 ~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 175 RAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHSSGGGCEEEEEC
T ss_pred HHHHHhCCccCeEEEEEe
Confidence 999999999999998887
No 24
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.11 E-value=0.00017 Score=69.74 Aligned_cols=168 Identities=10% Similarity=0.026 Sum_probs=113.9
Q ss_pred cCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-----CCCCCCHHHHHHHHH-HcCCeeeEee------cceeEE
Q 016092 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMG 161 (395)
Q Consensus 94 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~ 161 (395)
..+.+...+.+.+++.....+ ......++..++.. |.+......|.+.+. ..|...+++. +...+.
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~~--~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 241 ENTLPTTHIAIALEGVSWSAP--DYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp CTTCSEEEEEEEEECCCTTCT--THHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 334567777777776543322 34455667777743 111122345666666 4555433222 234566
Q ss_pred EEEEcC--CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 016092 162 YSFDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (395)
Q Consensus 162 ~~~~~~--~~~~~~~l~ll~~~l---~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (395)
+++.+. +++++++++.+.+.+ .+-.++++++++.|..++..+....+++...+........+ +.+... .-..
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~ 396 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSP--EEVF 396 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCH--HHHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCH--HHHH
Confidence 777777 789999988887655 45569999999999999999998878887766655555433 444321 1234
Q ss_pred HHhccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 236 ~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
+.|+++|.++++++.++++.+++++++++|
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 678999999999999999999999999999
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.10 E-value=7.5e-05 Score=71.94 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=113.2
Q ss_pred EEEEecCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCC-C----CCHHHHHHHHHHcCCeeeEeec------c
Q 016092 89 KIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR-N----RSHLRIVREVEAIGGNVQASAS------R 157 (395)
Q Consensus 89 ~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~-~----~s~~~l~~~l~~~g~~~~~~~~------~ 157 (395)
.+.....+.+...+.+.+.+..... .......++.+++..+.. . .....|.+.+...|...+++.. .
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~ 299 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNS--PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDS 299 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSC
T ss_pred eEEEcCCCCCceEEEEEeecCCCCC--ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCC
Confidence 3433333445666777777554332 234455677777754210 0 0012344555555554444332 2
Q ss_pred eeEEEEEEcCC-CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHhc-CCCCCCCC
Q 016092 158 EQMGYSFDALK-TYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISE--VSNNPQSLLLEAIHSAGY-SGALANPL 231 (395)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~l~ll~~~l~~p--~f~~~~~~~~k~~~~~el~~--~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (395)
..+.+++.+.+ ++++++++.+.+.+..- .++++++++.|..++..+.. ..+++...+........+ +.+.. .
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 377 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--L 377 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--H
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 45667777777 88888887776554321 59999999999999999988 778888777666555443 43332 1
Q ss_pred CCChHHhccCCHHHHHHHHHhhccCCCcEEEEec-CC
Q 016092 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (395)
Q Consensus 232 ~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~ 267 (395)
.-..+.|+++|.+++.++.++++.+++++++++| .+
T Consensus 378 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 1234668999999999999999999999999999 53
No 26
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.09 E-value=2e-05 Score=76.03 Aligned_cols=165 Identities=8% Similarity=-0.028 Sum_probs=113.6
Q ss_pred cCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHH-cCCeeeEee------cceeEEEEEEc
Q 016092 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASA------SREQMGYSFDA 166 (395)
Q Consensus 94 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~-~g~~~~~~~------~~~~~~~~~~~ 166 (395)
..+.+...+.+.+++..... .......++..++..|.. ..|.+.+.. .|...+++. +...+.++..+
T Consensus 229 ~~~~~q~~v~~~~~~~~~~~--~d~~~l~vl~~iLgg~~~----srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~ 302 (421)
T 3hdi_A 229 KKETEQAHLCLGYPGLPIGD--KDVYALVLLNNVLGGSMS----SRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT 302 (421)
T ss_dssp ECCCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHTSSSS----SHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCceEEEEEEecCCCCC--chHHHHHHHHHHhCCCcc----cHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe
Confidence 34455677777777544332 244556677777755422 355555643 455444332 23456777777
Q ss_pred CCCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHhccCC
Q 016092 167 LKTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLN 242 (395)
Q Consensus 167 ~~~~~~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~ 242 (395)
.+++.+++++.+.+.+. +-.++++++++.|..++.++....+++...+.......++ +.+... .-..+.|+++|
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt 380 (421)
T 3hdi_A 303 GHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSL--DEMIEQINAVQ 380 (421)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCH--HHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHcCC
Confidence 88889888888877654 4469999999999999999988888888777666555554 322211 12346789999
Q ss_pred HHHHHHHHHhhccCCCcEEEEec-CC
Q 016092 243 STLLEEFVAENYTGPRMVLAASG-VE 267 (395)
Q Consensus 243 ~~~l~~~~~~~~~~~~~~l~i~G-~~ 267 (395)
.+|++++.++++ +++++++++| .+
T Consensus 381 ~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 381 KQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHHc-ccCcEEEEECchh
Confidence 999999999999 9999999999 64
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.08 E-value=4.4e-05 Score=73.23 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=112.0
Q ss_pred CEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHHcCCeeeEeec------ceeEEEEEEcCCCCH
Q 016092 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKTYV 171 (395)
Q Consensus 98 ~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~~~ 171 (395)
....+.+.+++....++ ......++..++..|. ...|.+.+...|...+++.. ...+.+.+.+.+++.
T Consensus 234 ~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~----~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEG----SGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTT----TSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCc----chHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 55666666665444333 3345566777776542 23555556556665544432 235677777888889
Q ss_pred HHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHhccCCHHHHH
Q 016092 172 PEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLE 247 (395)
Q Consensus 172 ~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~ 247 (395)
+++++.+.+.+.. -.++++++++.|..++..+....+++...+........+ ..+... .-..+.|+++|.+|+.
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSL--EEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHhCCHHHHH
Confidence 9988888776644 359999999999999999998888888887777666665 333211 1234678999999999
Q ss_pred HHHHhhccCCCcEEEEec
Q 016092 248 EFVAENYTGPRMVLAASG 265 (395)
Q Consensus 248 ~~~~~~~~~~~~~l~i~G 265 (395)
++.++++.++++ ++++|
T Consensus 386 ~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHTTTTTSCE-EEEEE
T ss_pred HHHHHhcCcccE-EEEEC
Confidence 999999999998 99998
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.07 E-value=0.00013 Score=70.27 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=113.2
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHH-cCCeeeEeec------ceeEEEEEEcCC
Q 016092 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASAS------REQMGYSFDALK 168 (395)
Q Consensus 96 ~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~~~~~~~~~ 168 (395)
+.+...+.+.+.+..... .......++..++..|. ....|.+.+.. .|..++++.. ...+.+.+.+.+
T Consensus 239 ~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~~---~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~ 313 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGD--PDFFPLVVGNYALGGGG---FESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRA 313 (424)
T ss_dssp SSSEEEEEEEEEEEBTTC--TTHHHHHHHHHHHTTSG---GGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEES
T ss_pred CCCccEEEeeccCCCCCC--cchHHHHHHHHHhCCCC---ccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCc
Confidence 346677777777543322 23445567777764430 12346666654 5665554432 235677778888
Q ss_pred CCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHH
Q 016092 169 TYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245 (395)
Q Consensus 169 ~~~~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~ 245 (395)
++.+++++.+.+.+. +-.++++++++.|..++..+.....++...+........++.++... .-..+.|+++|.+|
T Consensus 314 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~d 392 (424)
T 3amj_B 314 EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYL-DHYTERVQAVTVEQ 392 (424)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTTT-TSHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhHH-HHHHHHHHcCCHHH
Confidence 889888888877665 34599999999999999988877778887776665443334443321 13457799999999
Q ss_pred HHHHHHhhccCCCcEEEEec
Q 016092 246 LEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 246 l~~~~~~~~~~~~~~l~i~G 265 (395)
+.++.++++.+++++++++|
T Consensus 393 v~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 393 VREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcCccceEEEEEC
Confidence 99999999999999999999
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.95 E-value=0.00017 Score=69.95 Aligned_cols=167 Identities=10% Similarity=0.007 Sum_probs=109.5
Q ss_pred cCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccC-----CCCCCHHHHHHHHHHcCCeeeEee------cceeEEE
Q 016092 94 TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-----TRNRSHLRIVREVEAIGGNVQASA------SREQMGY 162 (395)
Q Consensus 94 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-----t~~~s~~~l~~~l~~~g~~~~~~~------~~~~~~~ 162 (395)
..+.+...+.+.+++....++ ......++.+++..+ .+.-....|.+.+...|+..+++. +...+.+
T Consensus 245 ~~~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i 322 (446)
T 1pp9_A 245 EDGLPLAHVAIAVEGPGWAHP--DNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGA 322 (446)
T ss_dssp ETTSSSEEEEEEEEECCTTCT--HHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEE
T ss_pred cCCccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEE
Confidence 333455666666665433322 344556777777531 000112345555555554333322 1234667
Q ss_pred EEEcCCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHh
Q 016092 163 SFDALKTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAI 238 (395)
Q Consensus 163 ~~~~~~~~~~~~l~ll~~~l---~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l 238 (395)
+..+.+++.+++++.+.+.+ .+. ++++++++.|..++..+....+++...+........+ +.+... .-..+.|
T Consensus 323 ~~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~i 399 (446)
T 1pp9_A 323 HFVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPL--AEWESRI 399 (446)
T ss_dssp EEEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCH--HHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Confidence 77777789988888887655 334 9999999999999999988778887777665555433 433321 1224678
Q ss_pred ccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 239 NRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 239 ~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
.++|.++++++.++++.+++++++++|
T Consensus 400 ~~vt~edv~~~a~~~~~~~~~~~~~~g 426 (446)
T 1pp9_A 400 AEVDARVVREVCSKYFYDQCPAVAGFG 426 (446)
T ss_dssp HTCCHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred HcCCHHHHHHHHHHHcCCCCcEEEEEC
Confidence 899999999999999999999999999
No 30
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.85 E-value=3.5e-05 Score=74.41 Aligned_cols=163 Identities=11% Similarity=0.054 Sum_probs=108.6
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccC-CCCCCHHHHHHHHHH-cCCeeeEeec------ceeEEEEEEcC
Q 016092 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-TRNRSHLRIVREVEA-IGGNVQASAS------REQMGYSFDAL 167 (395)
Q Consensus 96 ~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-t~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~~~~~~~~ 167 (395)
+.....+.+.+.+.....+ ......++..++..| .. ..|.+.+.. .|..++++.. ...+.+++.+.
T Consensus 246 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~~----s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~ 319 (434)
T 3gwb_A 246 PSSQTSLMLAQLGIDRDDP--DYAAVSLGNQILGGGGFG----TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTR 319 (434)
T ss_dssp CSSEEEEEEEEECCBTTCT--THHHHHHHHHHHHSSSSC----SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEE
T ss_pred CCCceeEEecCcCCCCCCc--chHHHHHHHHHhCCCccc----chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecc
Confidence 3456667766665543332 334566677776544 22 245555554 3554433332 23567778888
Q ss_pred CCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHH
Q 016092 168 KTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNST 244 (395)
Q Consensus 168 ~~~~~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~ 244 (395)
+++.+++++.+.+.+.+ -.++++++++.|..++..+....+++...+........++.++... ....+.|+++|.+
T Consensus 320 ~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~ 398 (434)
T 3gwb_A 320 AEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYL-EDFMRQSQELTVE 398 (434)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHH-HHHHHHHHHCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHhCCHH
Confidence 88888888888776643 3689999999999999999888888888776666554443332211 1224678999999
Q ss_pred HHHHHHHhhccCCCcEEEEec
Q 016092 245 LLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 245 ~l~~~~~~~~~~~~~~l~i~G 265 (395)
|++++.++++.+++++++++|
T Consensus 399 dv~~~a~~~l~~~~~~~~vvg 419 (434)
T 3gwb_A 399 QVKAAMNKHLNVDKMVIVSAG 419 (434)
T ss_dssp HHHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHHhcChhhEEEEEEc
Confidence 999999999999999999999
No 31
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.83 E-value=0.00051 Score=67.29 Aligned_cols=167 Identities=14% Similarity=0.070 Sum_probs=111.4
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCC-------CCCCHHHHHHHHH-HcCCeeeEee------cceeEE
Q 016092 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST-------RNRSHLRIVREVE-AIGGNVQASA------SREQMG 161 (395)
Q Consensus 96 ~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt-------~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~ 161 (395)
+.+...+.+.+.+.....+ ......++..++..|. ++--...|.+.+. ..|...+++. +...+.
T Consensus 240 ~~~~~~v~~~~~~~~~~~~--d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~ 317 (475)
T 1hr6_A 240 LPELFHIQIGFEGLPIDHP--DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFG 317 (475)
T ss_dssp SCCCEEEEEEEECCCTTCT--THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCCc--cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEE
Confidence 3445667777775443322 3344566777774321 1111245665553 3465443332 224567
Q ss_pred EEEEcCCCCHHHHHHHHHHhhhC------CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 016092 162 YSFDALKTYVPEMVELLIDCVRN------PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (395)
Q Consensus 162 ~~~~~~~~~~~~~l~ll~~~l~~------p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (395)
+.+.+.+++++++++.+.+.+.. -.++++++++.|..++..+....+++...+........+ +.+.. ..-.
T Consensus 318 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~ 395 (475)
T 1hr6_A 318 ISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEM 395 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHH
Confidence 77888888999999988776654 249999999999999999988778888776665555443 44332 1123
Q ss_pred hHHhccCCHHHHHHHHHhhccC---------CCcEEEEec-C
Q 016092 235 ESAINRLNSTLLEEFVAENYTG---------PRMVLAASG-V 266 (395)
Q Consensus 235 ~~~l~~i~~~~l~~~~~~~~~~---------~~~~l~i~G-~ 266 (395)
.+.|+++|.+++.++.++++.+ .+++++++| .
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 396 ISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4668999999999999999987 589999999 5
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.70 E-value=0.001 Score=64.08 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=109.6
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCC----CCCCHHHHHHHHH-HcCCeeeEeec------ceeEEEEE
Q 016092 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST----RNRSHLRIVREVE-AIGGNVQASAS------REQMGYSF 164 (395)
Q Consensus 96 ~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt----~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~ 164 (395)
+.+...+.+.+.+.....+ ......++.+++..|. +.--...|.+.+. ..|..++++.. ...+.+.+
T Consensus 249 ~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~ 326 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGSA--EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYT 326 (439)
T ss_dssp CCSEEEEEEEEECCCTTSH--HHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccceEEEEEecCCCCCch--HHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEE
Confidence 4556777777775443321 3344566777774331 0001235666665 45544443332 23456777
Q ss_pred EcCCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHhcc
Q 016092 165 DALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 240 (395)
Q Consensus 165 ~~~~~~~~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 240 (395)
.+.+++++++++.+.+.+.. -.++++++++.|..++..+....+++...+........+ +.+.. ..-..+.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 404 (439)
T 1pp9_B 327 ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTP--PSTVLQQIDA 404 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhc
Confidence 77778888888887766643 469999999999999999988778888777666555554 33321 1123467899
Q ss_pred CCHHHHHHHHHhhccCCCcEEEEec
Q 016092 241 LNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 241 i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
+|.+|++++.++++. ++++++++|
T Consensus 405 vt~~dv~~~a~~~~~-~~~~~~v~g 428 (439)
T 1pp9_B 405 VADADVINAAKKFVS-GRKSMAASG 428 (439)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCceEEEEC
Confidence 999999999999998 889999999
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.55 E-value=0.00084 Score=65.05 Aligned_cols=141 Identities=11% Similarity=-0.022 Sum_probs=96.4
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHH-HHcCCeeeEee--c---c---eeEEEEEEcCCC-CHHHHHHHHHHhhhC---CC
Q 016092 120 TTHLLERMAFRSTRNRSHLRIVREV-EAIGGNVQASA--S---R---EQMGYSFDALKT-YVPEMVELLIDCVRN---PV 186 (395)
Q Consensus 120 ~a~ll~~l~~~gt~~~s~~~l~~~l-~~~g~~~~~~~--~---~---~~~~~~~~~~~~-~~~~~l~ll~~~l~~---p~ 186 (395)
...++..++..|. ...|.+.+ +..|...+++. . . ..+.+++.+.++ +.+++++.+.+.+.. -.
T Consensus 267 ~~~vl~~iLg~~~----~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g 342 (445)
T 3ami_A 267 ALEILAAVLDGYD----GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKG 342 (445)
T ss_dssp HHHHHHHHHHSST----TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCc----chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4556677775442 23566654 35565544433 1 2 345566666666 588888877666543 34
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 187 FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 187 f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
++++++++.|+.++..+....+++..++........++.+.... .-..+.|+++|.+++.++.++++.+++++++++|
T Consensus 343 ~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~ 420 (445)
T 3ami_A 343 VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDD-DRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLV 420 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHH-HHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHH-HHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEc
Confidence 99999999999999999888788877766555554443222111 1124668999999999999999999999999999
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.22 E-value=0.0013 Score=63.00 Aligned_cols=161 Identities=12% Similarity=0.038 Sum_probs=104.2
Q ss_pred CCCEEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCHHHHHHHHHH-cCCeeeEeec----ceeEEEEEEcCCCC
Q 016092 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA-IGGNVQASAS----REQMGYSFDALKTY 170 (395)
Q Consensus 96 ~~~~~~~~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~-~g~~~~~~~~----~~~~~~~~~~~~~~ 170 (395)
+.+...+.+.+.++..... .......++.+++..|. ...|.+.+.. .|..++++.. ...+.+++.+.+++
T Consensus 251 ~~~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~ 325 (425)
T 3d3y_A 251 VLAQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFP----HSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKN 325 (425)
T ss_dssp ECSSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTST----TSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGG
T ss_pred CccccEEEEEeecCCCCCC-chHHHHHHHHHHhCCCh----hhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhh
Confidence 3445566666766422222 24456677888875442 2356666653 4654444332 23566777777788
Q ss_pred HHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHHhccCCHHHH
Q 016092 171 VPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLL 246 (395)
Q Consensus 171 ~~~~l~ll~~~l~---~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l 246 (395)
++++++.+.+.+. +-.++++++++.|..++..+....+++...+........+ +.+. ......+.|+++|.+|+
T Consensus 326 ~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~edv 403 (425)
T 3d3y_A 326 RNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPEI 403 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHHH
Confidence 8888888766554 3469999999999999999988778888777666555554 3322 11122466889999999
Q ss_pred HHHHHhhccCCCcEEEEec
Q 016092 247 EEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 247 ~~~~~~~~~~~~~~l~i~G 265 (395)
+++.++++ +++ .++++|
T Consensus 404 ~~~a~~~~-~~~-~~~v~g 420 (425)
T 3d3y_A 404 QEVAKRLE-LQA-IFFLEG 420 (425)
T ss_dssp HHHHHHCE-EEE-EEEEEE
T ss_pred HHHHHhcc-Cce-EEEEeC
Confidence 99999865 444 445555
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.90 E-value=0.01 Score=58.27 Aligned_cols=162 Identities=11% Similarity=0.075 Sum_probs=95.8
Q ss_pred cCCCCEEEEEEEEcccccCCCCCCCcH-----HHHHHHhhccCCCCCCHHHHHHHHHH---cCCeeeEee----cceeEE
Q 016092 94 TSVSPVASISLYVGCGSIYESPISFGT-----THLLERMAFRSTRNRSHLRIVREVEA---IGGNVQASA----SREQMG 161 (395)
Q Consensus 94 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~-----a~ll~~l~~~gt~~~s~~~l~~~l~~---~g~~~~~~~----~~~~~~ 161 (395)
+.+.+...+.+.+++.....+ +...+ ..++..+++ ..|...+.. .|...+++. .++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~-d~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQ-DSMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCcc-cHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceE
Confidence 334455556666655443332 11111 245555554 144444443 444433332 344556
Q ss_pred EEEEcCCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHhcCCCCCCCCC-
Q 016092 162 YSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPLL- 232 (395)
Q Consensus 162 ~~~~~~~~~~~~~l~ll~~~l~~---p~f~~~~~~~~k~~~~~el~~~~-----~~p~~~~~~~l~~~~~~~~~~~~~~- 232 (395)
+.+.+..++.+++++.+.+.+.. -.|+++|+++.|..++..+.... .+...++.+.+........++.+..
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77777888999988888776544 46999999999999998876542 2344444444433332333332210
Q ss_pred -C-ChHHhccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 233 -A-PESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 233 -~-~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
- ..+.|+++|.+++.++.++++.+++ .++++|
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~~-~~vvvg 445 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQDT-TLVLMQ 445 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCC-EEEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCC-eEEEEc
Confidence 0 1134889999999999999999754 455555
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=39.20 E-value=15 Score=33.34 Aligned_cols=76 Identities=8% Similarity=0.047 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHh
Q 016092 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAI 238 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l 238 (395)
.+.+++.+. +.+++.+.+.+.+.+. ++++++++.|..++..+....+++ +.+. +. .|
T Consensus 268 ~~~i~~~~~--~~~~~~~~i~~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~-----------------~~~~--~~-~i 324 (352)
T 3cx5_B 268 LFTLFVRDQ--DSAVVSSNIKKIVADL-KKGKDLSPAINYTKLKNAVQNESV-----------------SSPI--EL-NF 324 (352)
T ss_dssp EEEEEEEES--CHHHHHHHHHHHHHHH-HSCEECGGGHHHHHHHHHHHCCST-----------------TCCC--CS-CG
T ss_pred eEEEEEEeC--CHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhhhhcc-----------------CCcc--ce-ee
Confidence 344555543 6777777777766554 788899999998888777555442 1111 11 47
Q ss_pred ccCCHHHHHHHHHhhccCCCcEEEEec-CC
Q 016092 239 NRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (395)
Q Consensus 239 ~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~ 267 (395)
+++|.+ + + ++++++++| ++
T Consensus 325 ~~vt~~-------~-~--~~~~~~~~G~~~ 344 (352)
T 3cx5_B 325 DAVKDF-------K-L--GKFNYVAVGDVS 344 (352)
T ss_dssp GGCCEE-------C-C--CSCEEEEEESGG
T ss_pred eeeeHh-------h-c--CCceEEEEcccc
Confidence 777722 2 4 899999999 65
No 37
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=37.09 E-value=48 Score=23.80 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=45.5
Q ss_pred hccCCCCCCHHHHHHHHHHcCCeeeEeeccee-EEEEEEcCCCCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 016092 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQ-MGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197 (395)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ll~~~l~~p~f~~~~~~~~k~ 197 (395)
.+.|+-..+..++.+.++.+|+.+..+++... ..+.+.....++.++.++ -=|.+++++|.....
T Consensus 14 v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 14 VITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRLLE 79 (92)
T ss_dssp ECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHHHH
Confidence 35666555899999999999999998887643 334444455677777554 456777777766553
No 38
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=32.42 E-value=71 Score=23.75 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHcCCeeeEeecceeE-EEEEEcCC-CCHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 016092 134 NRSHLRIVREVEAIGGNVQASASREQM-GYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQL 196 (395)
Q Consensus 134 ~~s~~~l~~~l~~~g~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~ll~~~l~~p~f~~~~~~~~k 196 (395)
.++..++.+.++.+|+.+..+++.... .+.+.-.. .++.++-++ -=|.+++++|.+..
T Consensus 46 ~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l-----gI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 46 SIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLNLI 105 (109)
T ss_dssp SCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH-----TCEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc-----CCeEEeHHHHHHHH
Confidence 467899999999999999999886432 23333222 344555443 34667777776554
No 39
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.86 E-value=85 Score=23.48 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=38.0
Q ss_pred ccCCC-CCCHHHHHHHHHHcCCeeeEeecceeEE-EEEEcCC-CCHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 016092 129 FRSTR-NRSHLRIVREVEAIGGNVQASASREQMG-YSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQL 196 (395)
Q Consensus 129 ~~gt~-~~s~~~l~~~l~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~ll~~~l~~p~f~~~~~~~~k 196 (395)
+.|+- .+++.++.+.++.+|+.+..+++..... +.+.-.. .++.++-++ -=|.+++++|.+..
T Consensus 30 ~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~l-----gI~IisE~~f~~ll 95 (112)
T 2ebu_A 30 ITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLNLI 95 (112)
T ss_dssp ECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHH-----TCEEEEHHHHHHHH
T ss_pred EeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHc-----CCeEEeHHHHHHHH
Confidence 34443 4689999999999999999988864332 2222211 344444432 33556666665443
No 40
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=26.94 E-value=1.3e+02 Score=20.24 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCeeeEeecceeEEEEEEcCCCCHHHHHHHHHHhhhC
Q 016092 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRN 184 (395)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~ 184 (395)
..+...++..++.+.-..-.+...+.+..+.++.+.+.+.|.+....
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 35777889999987766666779999999999999998888887653
No 41
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=25.87 E-value=25 Score=24.48 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=36.5
Q ss_pred hcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 222 GYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
.|++++...+++..+.|+..+.++...-..+.|....+++.+.|
T Consensus 31 ~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 31 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred EecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45677777777888999999998888778888888999999988
No 42
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=24.79 E-value=35 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred hcCCCCCCCCCCChHHhccCCHHHHHHHHHhhccCCCcEEEEec
Q 016092 222 GYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (395)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 265 (395)
.|++++...+++..+.|+..+.++...-..+.|....+++.+.|
T Consensus 61 ~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 61 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45777777778888999999998877778888888999999887
No 43
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=22.91 E-value=69 Score=24.03 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=39.5
Q ss_pred hccCCCCCCHHHHHHHHHHcCCeeeEeecceeEEEEEEc----CCCCHHHHHHHHHHhhhCCCCCHHHHH
Q 016092 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDA----LKTYVPEMVELLIDCVRNPVFLDWEVN 193 (395)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l~ll~~~l~~p~f~~~~~~ 193 (395)
.+.|+-..++.++.+.++.+|+.+..+++.....+-... ...++.++-+ +-=|.++++.++
T Consensus 17 ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~-----lgI~IvsE~~l~ 81 (113)
T 2cok_A 17 LTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKE-----ANIRVVSEDFLQ 81 (113)
T ss_dssp EECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHH-----TTCCEECTHHHH
T ss_pred EEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHH-----CCCcEEeHHHHH
Confidence 356776678999999999999999999987653332220 2234444433 345666665443
No 44
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=20.87 E-value=84 Score=28.08 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=32.6
Q ss_pred HhccCCHHHHHHHHHhhccCCCcEEEEec-CCHHHHHHHHHh
Q 016092 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (395)
Q Consensus 237 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G-~~~~~l~~~i~~ 277 (395)
.|++++.+++++..+.. ..++.+.++| ++.+.+.++++.
T Consensus 234 ~LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 234 LLDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EEESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred EECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 46788999999988766 4689999999 999999888864
Done!