BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016093
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1
Length = 86
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSPTMCTDKWR
Sbjct: 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWR 60
Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61 NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d
Phosphomimetic Mutation
Length = 86
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/86 (90%), Positives = 80/86 (93%)
Query: 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSP MCTDKWR
Sbjct: 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60
Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61 NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 133 WRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTF 189
+R F+K K Q R SG + Y E+ +I+K KN +K S+ K F
Sbjct: 38 YREYEAYFQKEKPQSRTSGLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKF 94
>pdb|3SEJ|A Chain A, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|B Chain B, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|C Chain C, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|D Chain D, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|E Chain E, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|F Chain F, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|G Chain G, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|H Chain H, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|I Chain I, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SEJ|J Chain J, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To Secretor Lewis Hbga (Leb)
pdb|3SJP|A Chain A, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|A Chain A, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|B Chain B, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|C Chain C, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|D Chain D, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|E Chain E, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|F Chain F, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|G Chain G, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|H Chain H, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|I Chain I, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SKB|J Chain J, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05)
pdb|3SLD|A Chain A, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|B Chain B, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|C Chain C, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|D Chain D, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|E Chain E, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|F Chain F, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|G Chain G, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|H Chain H, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|I Chain I, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLD|J Chain J, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To A Trisaccharide
pdb|3SLN|A Chain A, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|B Chain B, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|C Chain C, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|D Chain D, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|E Chain E, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|F Chain F, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|G Chain G, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|H Chain H, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|I Chain I, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
pdb|3SLN|J Chain J, Structural Characterization Of A Gii.4 2004 Norovirus
Variant (Tch05) Bound To H Pentasaccharide
Length = 311
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 54 QPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDG 98
+PQQ +L D SG + H V A T+ ++ L+ FR M G
Sbjct: 179 EPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQ---LLFFRSTMPG 220
>pdb|2VZA|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|B Chain B, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|C Chain C, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|D Chain D, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|E Chain E, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|F Chain F, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|G Chain G, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|H Chain H, Type Iv Secretion System Effector Protein Bepa
Length = 298
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 39 RDMIMEVAAASNGELQPQQMILADSSGGE 67
R M+ VA A NG+L+P Q + D S E
Sbjct: 185 RMMVASVAVAENGDLEPMQHLFEDISNPE 213
>pdb|2JK8|A Chain A, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
pdb|2JK8|B Chain B, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
Length = 302
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 39 RDMIMEVAAASNGELQPQQMILADSSGGE 67
R M+ VA A NG+L+P Q + D S E
Sbjct: 193 RMMVASVAVAENGDLEPMQHLFEDISNPE 221
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 2 YLSEKPRPYLTEKPRPIDYYKDEXXXXXXXXXXXXSSRDMIMEVAAASNGELQPQQM--- 58
+LS P T++P P +E DM+ AA+ + P ++
Sbjct: 120 FLSADP----TDRPFPRPLQPEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTV 175
Query: 59 ILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKH 108
+L D GG D +P Q+ R L RE+ +++T + N+H
Sbjct: 176 VLCDD-GGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRERNEH 224
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 292 AFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKT 351
+FG++ R E + V RD+ N L DE T+KV + + I D+
Sbjct: 128 SFGLQVARGMEYLAEQKFVH---RDLAARNCML--DESFTVKVADFGLARDIL----DRE 178
Query: 352 FYTEEDYREFLARHGWTCLREFDGYR 377
+Y+ + +R WT L YR
Sbjct: 179 YYSVQQHRHARLPVKWTALESLQTYR 204
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 152 SAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATG 211
S +YYK+ L+E+ K A+ K ++ ++ + + +KG+ I PV+
Sbjct: 283 SVPSTYYKQ----LREKLKTAKIKVKENIDALEELKILVDYDEKGY-LLQIFTKPVQ--D 335
Query: 212 RPTLNLE--RRLDHDG 225
RPTL LE +R +H G
Sbjct: 336 RPTLFLEVIQRHNHQG 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,295,853
Number of Sequences: 62578
Number of extensions: 510440
Number of successful extensions: 1113
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 14
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)