Query 016093
Match_columns 395
No_of_seqs 153 out of 531
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 7.4E-25 2.5E-29 175.8 8.2 86 75-160 1-86 (86)
2 3sjm_A Telomeric repeat-bindin 98.0 8.6E-06 2.9E-10 62.6 5.1 50 77-138 10-60 (64)
3 1w0t_A Telomeric repeat bindin 97.8 3.3E-05 1.1E-09 56.5 5.6 48 79-138 3-51 (53)
4 1ity_A TRF1; helix-turn-helix, 97.7 5.4E-05 1.9E-09 58.1 6.4 53 74-138 6-59 (69)
5 2cqr_A RSGI RUH-043, DNAJ homo 97.5 0.00025 8.6E-09 56.1 7.3 55 74-138 14-68 (73)
6 2din_A Cell division cycle 5-l 97.5 0.00052 1.8E-08 52.0 8.4 53 74-141 5-57 (66)
7 2d9a_A B-MYB, MYB-related prot 97.5 0.00013 4.5E-09 54.3 4.8 52 73-137 3-54 (60)
8 1guu_A C-MYB, MYB proto-oncoge 97.4 0.00017 5.8E-09 52.2 4.5 47 78-137 3-49 (52)
9 2yum_A ZZZ3 protein, zinc fing 97.4 0.00056 1.9E-08 53.0 7.5 57 73-137 3-59 (75)
10 2dim_A Cell division cycle 5-l 97.3 0.00029 9.8E-09 54.1 5.1 52 73-137 4-55 (70)
11 1x41_A Transcriptional adaptor 97.3 0.00051 1.8E-08 51.5 6.0 51 74-137 4-54 (60)
12 2llk_A Cyclin-D-binding MYB-li 97.2 0.00028 9.7E-09 55.8 4.5 51 73-138 18-68 (73)
13 2cqq_A RSGI RUH-037, DNAJ homo 97.2 0.0016 5.6E-08 51.2 8.3 53 76-139 6-58 (72)
14 2elk_A SPCC24B10.08C protein; 97.1 0.0009 3.1E-08 50.0 5.9 46 79-136 10-55 (58)
15 2cu7_A KIAA1915 protein; nucle 97.1 0.0011 3.8E-08 51.2 6.2 53 73-139 4-56 (72)
16 2yus_A SWI/SNF-related matrix- 97.0 0.00062 2.1E-08 54.3 4.9 48 75-136 15-62 (79)
17 1gvd_A MYB proto-oncogene prot 97.0 0.00053 1.8E-08 49.7 4.0 47 78-137 3-49 (52)
18 2roh_A RTBP1, telomere binding 97.0 0.0013 4.3E-08 56.9 7.1 57 74-139 27-83 (122)
19 2juh_A Telomere binding protei 96.9 0.003 1E-07 54.6 8.5 57 74-139 13-69 (121)
20 2ckx_A NGTRF1, telomere bindin 96.7 0.0024 8.3E-08 51.5 5.8 51 80-139 2-52 (83)
21 3osg_A MYB21; transcription-DN 96.6 0.0021 7.3E-08 54.3 5.2 52 74-139 58-109 (126)
22 2cjj_A Radialis; plant develop 96.6 0.005 1.7E-07 50.7 7.2 58 78-145 8-65 (93)
23 2k9n_A MYB24; R2R3 domain, DNA 96.6 0.0041 1.4E-07 51.0 6.6 52 74-139 49-100 (107)
24 2aje_A Telomere repeat-binding 96.5 0.0022 7.4E-08 54.1 4.1 55 74-138 9-64 (105)
25 3osg_A MYB21; transcription-DN 96.4 0.0034 1.2E-07 53.1 4.9 49 75-137 8-56 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 96.3 0.0025 8.7E-08 51.7 3.4 51 74-138 52-102 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0063 2.1E-07 50.0 4.9 46 79-137 2-47 (107)
28 1x58_A Hypothetical protein 49 95.8 0.011 3.6E-07 45.9 4.8 50 77-138 7-57 (62)
29 1gv2_A C-MYB, MYB proto-oncoge 95.8 0.0061 2.1E-07 49.5 3.6 46 78-136 4-49 (105)
30 2ltp_A Nuclear receptor corepr 94.7 0.0017 5.7E-08 52.5 0.0 53 74-140 12-64 (89)
31 1h8a_C AMV V-MYB, MYB transfor 95.7 0.0084 2.9E-07 50.5 4.2 51 74-137 23-73 (128)
32 1h8a_C AMV V-MYB, MYB transfor 95.4 0.0062 2.1E-07 51.3 2.4 51 74-138 75-125 (128)
33 3zqc_A MYB3; transcription-DNA 95.3 0.0079 2.7E-07 51.0 2.6 51 74-138 50-100 (131)
34 1h89_C C-MYB, MYB proto-oncoge 94.6 0.023 8E-07 49.3 3.9 51 74-137 54-104 (159)
35 1h89_C C-MYB, MYB proto-oncoge 94.1 0.02 7E-07 49.7 2.3 51 74-138 106-156 (159)
36 3zqc_A MYB3; transcription-DNA 94.0 0.015 5E-07 49.4 1.1 46 79-137 3-48 (131)
37 1ug2_A 2610100B20RIK gene prod 93.7 0.43 1.5E-05 39.7 9.3 72 65-147 20-91 (95)
38 1wgx_A KIAA1903 protein; MYB D 92.7 0.2 6.7E-06 39.8 5.6 50 78-137 8-57 (73)
39 1ign_A Protein (RAP1); RAP1,ye 91.5 0.11 3.8E-06 49.7 3.4 53 78-138 8-60 (246)
40 2lr8_A CAsp8-associated protei 89.8 0.052 1.8E-06 43.1 0.0 59 75-145 11-69 (70)
41 3hm5_A DNA methyltransferase 1 89.4 0.63 2.2E-05 38.4 5.8 56 79-144 31-87 (93)
42 2eqr_A N-COR1, N-COR, nuclear 88.4 0.53 1.8E-05 35.2 4.3 45 76-134 10-54 (61)
43 2iw5_B Protein corest, REST co 87.5 0.49 1.7E-05 45.0 4.4 48 76-137 131-178 (235)
44 1fex_A TRF2-interacting telome 79.1 2.1 7E-05 32.2 4.0 52 79-135 3-55 (59)
45 2xag_B REST corepressor 1; ami 69.2 3.8 0.00013 42.5 4.3 45 75-133 377-421 (482)
46 4iej_A DNA methyltransferase 1 63.9 13 0.00045 30.7 5.7 57 79-145 31-88 (93)
47 1ndd_A NEDD8, protein (ubiquit 60.6 25 0.00085 25.2 6.3 66 265-336 3-71 (76)
48 1wx7_A Ubiquilin 3; ubiquitin- 58.9 31 0.0011 27.4 7.1 68 263-336 18-87 (106)
49 3a9j_A Ubiquitin; protein comp 54.4 38 0.0013 24.2 6.4 58 272-335 13-70 (76)
50 1j8c_A Ubiquitin-like protein 52.9 87 0.003 26.0 9.2 69 262-336 32-102 (125)
51 2yqk_A Arginine-glutamic acid 50.6 41 0.0014 25.0 6.1 44 73-130 4-48 (63)
52 3h2b_A SAM-dependent methyltra 40.5 48 0.0017 27.6 5.8 25 348-372 155-179 (203)
53 3n3k_B Ubiquitin; hydrolase, p 39.3 77 0.0026 23.2 6.2 59 272-336 16-74 (85)
54 3e23_A Uncharacterized protein 39.3 1E+02 0.0035 25.8 7.7 23 350-372 156-179 (211)
55 1xtp_A LMAJ004091AAA; SGPP, st 39.0 1.5E+02 0.005 25.4 8.8 27 346-372 209-235 (254)
56 1yx5_B Ubiquitin; proteasome, 38.8 77 0.0026 24.4 6.3 68 265-338 3-73 (98)
57 2c9l_Y EB1, zebra, BZLF1 trans 37.6 24 0.00083 26.9 3.0 21 126-146 13-33 (63)
58 3b08_A Polyubiquitin-C, ubiqui 37.5 89 0.0031 25.3 6.8 47 272-322 13-59 (152)
59 3lcc_A Putative methyl chlorid 35.9 79 0.0027 27.1 6.5 111 262-382 68-214 (235)
60 4eew_A Large proline-rich prot 35.8 70 0.0024 24.0 5.5 66 264-336 19-87 (88)
61 3mtn_B UBA80, ubcep1, ubiquiti 35.7 91 0.0031 22.7 6.0 58 273-336 17-74 (85)
62 3phx_B Ubiquitin-like protein 35.5 97 0.0033 22.6 6.2 55 276-336 21-75 (79)
63 2xzm_J Ribosomal protein S10 c 35.5 14 0.00046 31.5 1.5 39 293-339 80-119 (120)
64 3k9o_B Ubiquitin, UBB+1; E2-25 35.2 1.1E+02 0.0037 23.2 6.6 59 272-336 14-72 (96)
65 3dbh_I NEDD8; cell cycle, acti 34.8 77 0.0026 23.5 5.5 67 263-335 13-82 (88)
66 2bwf_A Ubiquitin-like protein 34.7 1.1E+02 0.0038 21.9 6.3 65 265-335 7-73 (77)
67 2l7r_A Ubiquitin-like protein 33.5 59 0.002 25.2 4.8 68 263-336 20-88 (93)
68 2zkq_j 40S ribosomal protein S 32.7 13 0.00043 31.6 0.8 38 293-338 80-118 (119)
69 2klc_A Ubiquilin-1; ubiquitin- 32.2 1.3E+02 0.0044 23.7 6.7 68 263-336 26-95 (101)
70 4dwf_A HLA-B-associated transc 30.6 96 0.0033 23.3 5.5 67 265-338 8-77 (90)
71 1irz_A ARR10-B; helix-turn-hel 29.8 1.1E+02 0.0038 23.5 5.6 53 73-134 2-54 (64)
72 3m63_B Ubiquitin domain-contai 29.0 83 0.0028 24.9 5.1 66 264-335 30-97 (101)
73 3u30_A Ubiquitin, linear DI-ub 28.0 1.4E+02 0.0049 25.2 6.8 66 264-335 22-90 (172)
74 2dzi_A Ubiquitin-like protein 27.8 1.3E+02 0.0044 21.8 5.6 67 263-335 8-77 (81)
75 4hcn_B Polyubiquitin, ubiquiti 27.7 1.3E+02 0.0043 23.4 5.8 67 264-336 24-93 (98)
76 2dmt_A Homeobox protein BARH-l 27.4 2E+02 0.0068 21.6 9.2 62 72-144 15-76 (80)
77 1jdw_A L-arginine\:glycine ami 27.1 1.3E+02 0.0045 30.1 7.2 78 261-370 261-338 (423)
78 1wy8_A NP95-like ring finger p 27.0 99 0.0034 23.1 5.0 68 263-336 8-80 (89)
79 4fbj_B NEDD8; effector-HOST ta 26.7 1.3E+02 0.0044 22.8 5.7 56 275-336 16-71 (88)
80 3v6c_B Ubiquitin; structural g 26.2 2.1E+02 0.0072 21.6 7.1 67 264-336 19-88 (91)
81 1wlx_A Alpha-actinin 4; three- 26.2 1E+02 0.0036 26.5 5.5 58 82-139 43-113 (129)
82 4eef_G F-HB80.4, designed hema 25.7 4 0.00014 32.6 -3.2 45 78-132 20-64 (74)
83 1yqb_A Ubiquilin 3; structural 24.9 1.1E+02 0.0038 24.1 5.1 68 263-336 23-92 (100)
84 2faz_A Ubiquitin-like containi 24.5 2E+02 0.0068 20.7 6.9 67 264-336 4-75 (78)
85 1uel_A HHR23B, UV excision rep 24.1 1.8E+02 0.0061 22.4 6.1 61 272-338 13-76 (95)
86 3r8n_J 30S ribosomal protein S 24.0 23 0.00078 28.7 0.8 37 292-336 60-98 (98)
87 2cuf_A FLJ21616 protein; homeo 24.0 2.5E+02 0.0085 21.9 7.0 65 75-145 8-82 (95)
88 3b08_A Polyubiquitin-C, ubiqui 24.0 2.1E+02 0.0072 23.0 6.8 69 262-336 76-147 (152)
89 1hkq_A REPA, replication prote 23.1 20 0.00068 30.0 0.3 43 261-307 42-87 (132)
90 1wh3_A 59 kDa 2'-5'-oligoadeny 22.8 2E+02 0.0069 21.2 6.0 69 262-336 7-78 (87)
91 2kan_A Uncharacterized protein 22.6 1.4E+02 0.0046 23.3 5.2 69 262-336 15-86 (94)
92 3u5c_U 40S ribosomal protein S 22.3 26 0.0009 29.8 0.9 38 293-338 82-120 (121)
93 3m62_B UV excision repair prot 22.3 1.5E+02 0.005 23.6 5.4 56 276-337 18-73 (106)
94 1ut1_A DRAA, DR hemagglutinin 20.3 25 0.00087 31.2 0.5 18 315-332 130-147 (148)
95 2wyq_A HHR23A, UV excision rep 20.0 2.6E+02 0.0089 20.4 6.6 67 264-336 7-79 (85)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.91 E-value=7.4e-25 Score=175.80 Aligned_cols=86 Identities=91% Similarity=1.401 Sum_probs=81.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK 154 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YKKiKd~nkgsG~kk 154 (395)
++|..+||++||++||++|++++..|..++++..+|++||+.|.++||+||+.||+.||+||++.||++|++++.+|..+
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~ 80 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK 80 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 36889999999999999999999999988899999999999999999999999999999999999999999988778789
Q ss_pred CcChHH
Q 016093 155 MSYYKE 160 (395)
Q Consensus 155 WpYFDE 160 (395)
|+||+|
T Consensus 81 ~~yf~e 86 (86)
T 2ebi_A 81 MSYYKE 86 (86)
T ss_dssp CCCCCC
T ss_pred CCCCCc
Confidence 999975
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.96 E-value=8.6e-06 Score=62.57 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016093 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (395)
Q Consensus 77 Rg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY-~RSaeQCr~KWKNLKK 138 (395)
+...||.+|-..|+++...+ .. .-|..||+.+ ++ .||+.||++||+||++
T Consensus 10 kk~~WT~eED~~L~~~V~~~----G~-----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKY----GE-----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHH----CT-----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcc----CC-----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 34589999999999988754 11 1399999764 33 4999999999999985
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.79 E-value=3.3e-05 Score=56.51 Aligned_cols=48 Identities=27% Similarity=0.592 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY-~RSaeQCr~KWKNLKK 138 (395)
..||.+|...|+++...+- ..-|..||..| ++ .||+.||+++|.||.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 5899999999999887641 12599999987 45 4999999999999975
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.75 E-value=5.4e-05 Score=58.10 Aligned_cols=53 Identities=25% Similarity=0.560 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY-~RSaeQCr~KWKNLKK 138 (395)
+..+...||.+|..+|+++...+ . ..-|..||..| ++ .||+.||+++|.|+.+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~----G-----~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKY----G-----EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHH----C-----SSCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----C-----CCcHHHHHHHc---CcCCCCHHHHHHHHHHHcC
Confidence 44556799999999999988753 1 12599999987 35 6999999999999875
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.51 E-value=0.00025 Score=56.05 Aligned_cols=55 Identities=16% Similarity=0.478 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
+......||.+|-.+|+.+...+ . +....-|..||..|- .||..||+.+|.+|..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~----g--~~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQY----P--RGSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHS----C--SSSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHc----C--CCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 33445689999999999887642 2 124578999999874 4999999999999974
No 6
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.00052 Score=52.04 Aligned_cols=53 Identities=19% Similarity=0.513 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK 141 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YK 141 (395)
|.-....||.+|-..||++... +. .-|..||. |- | ||+.||+++|.++.+.-.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~----~g------~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL----MP------TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH----CT------TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----cC------CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHh
Confidence 4445568999999999998553 21 15999999 64 4 999999999999986533
No 7
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.46 E-value=0.00013 Score=54.32 Aligned_cols=52 Identities=19% Similarity=0.532 Sum_probs=41.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
.|..+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 4555667999999999999887631 124999999974 499999999999764
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.38 E-value=0.00017 Score=52.16 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
...||.+|-..|+++...+ .. .-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN----GT-----DDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH----CS-----SCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh----CC-----CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 3589999999999998764 11 24999999974 599999999999875
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00056 Score=53.00 Aligned_cols=57 Identities=11% Similarity=0.349 Sum_probs=43.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
.|......||.+|-..|+++... |........-|..||+.|. .||+.||+.+|.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 45556679999999999998764 3222223468999999995 499999999996554
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00029 Score=54.08 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
.+.-+...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHHc
Confidence 3555667999999999999887531 125999999985 699999999998754
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.26 E-value=0.00051 Score=51.46 Aligned_cols=51 Identities=12% Similarity=0.355 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
+.-....||.+|-..||++...+ .. .-|..||..|. .||+.||+.+|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~----G~-----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDC----GF-----GNWQDVANQMC----TKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT----CT-----TCHHHHHHHHT----TSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----Cc-----CcHHHHHHHhC----CCCHHHHHHHHHHHc
Confidence 34445689999999999987653 11 24999999994 499999999998764
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.23 E-value=0.00028 Score=55.82 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=41.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
.|.-....||.+|-..||++...+- + -|..||..| .||..||+++|+.|++
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G--------~--kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG--------N--DWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS--------S--CHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC--------C--CHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 3555567999999999999987631 1 199999998 4999999999998864
No 13
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.17 E-value=0.0016 Score=51.22 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 76 kRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
.....||.+|-++|+.+.. .|.... ..-|+.||+.| | ||+.||+.+|+.|+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3456899999999998876 343222 35699999998 4 9999999999999764
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.10 E-value=0.0009 Score=49.96 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNL 136 (395)
..||.+|-..|+++...+- ..-|..||+.|. -.||+.||+.+|.++
T Consensus 10 ~~WT~eED~~L~~~v~~~G---------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLG---------LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTT---------TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 4799999999999887531 135999999984 259999999999875
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.05 E-value=0.0011 Score=51.22 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
.|.-....||.+|-..||++...+- .-|..||..|. .||..||+++|.++.+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 3555567999999999999887631 15999999874 49999999999988753
No 16
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.05 E-value=0.00062 Score=54.29 Aligned_cols=48 Identities=19% Similarity=0.429 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNL 136 (395)
......||.+|..+||++...+- .-|..||+.|. .||+.||+.+|.+|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G----------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK----------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS----------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 34467999999999999876522 35999999984 59999999999876
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.04 E-value=0.00053 Score=49.65 Aligned_cols=47 Identities=23% Similarity=0.636 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
...||.+|-..|+++...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 35899999999999887531 124999999873 599999999998753
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.04 E-value=0.0013 Score=56.91 Aligned_cols=57 Identities=18% Similarity=0.375 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
..+....||.+|..+|++....+ .. .-|..|+..+...=-.||..||++||+||.+.
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GT-----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SS-----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CC-----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34445699999999999988864 11 25999998654211259999999999999964
No 19
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=96.94 E-value=0.003 Score=54.55 Aligned_cols=57 Identities=14% Similarity=0.333 Sum_probs=43.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
+......||.+|..+|++....+- ..-|..|+..+...=-.||..||++||+||.+.
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G---------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHG---------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 444456999999999999888642 125999998874311259999999999999975
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.72 E-value=0.0024 Score=51.54 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 80 TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 80 ~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
.||.+|..+|++....+ .. .-|..|+..-...=-.||..||++||+||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~-----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS-----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC-----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 69999999999988763 11 25999988521100159999999999999863
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.63 E-value=0.0021 Score=54.28 Aligned_cols=52 Identities=17% Similarity=0.448 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
|.-....||.+|-..|+++..++- .-|..||..|. .||..||+++|.+|.+.
T Consensus 58 p~~~~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 58 PSISHTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 444456899999999999987752 13999998763 59999999999999864
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.62 E-value=0.005 Score=50.69 Aligned_cols=58 Identities=12% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YKKiKd 145 (395)
...||.+|-.+|+.+...+ .. -...-|+.||..|- .||..||+.+|++|...-+.++.
T Consensus 8 ~~~WT~eEd~~L~~al~~~----~~--~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVY----DK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHS----CT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc----CC--CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999887642 21 13467999999984 39999999999999977665543
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.59 E-value=0.0041 Score=51.04 Aligned_cols=52 Identities=23% Similarity=0.502 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKE 139 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~ 139 (395)
|.-....||.+|-..||.+...+- .-|..||..|. .||..||+++|.+|.+.
T Consensus 49 p~i~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 49 PALRTDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 444456999999999999887631 14999999883 59999999999999874
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.46 E-value=0.0022 Score=54.08 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekG-Y~RSaeQCr~KWKNLKK 138 (395)
+..+...||.+|..+|++....+ .. .-|..|+..+.. - -.||..||++||+||.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~----G~-----g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKL----GT-----GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHH----CS-----SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHh
Confidence 44456699999999999988753 11 259999875421 1 25999999999999996
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.38 E-value=0.0034 Score=53.06 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
..+...||.+|...|+++...+- .-|..||..|. .||+.||+.+|.|..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G----------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHG----------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHT----------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 34456899999999999987651 14999998874 599999999999855
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.26 E-value=0.0025 Score=51.75 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|.+|.+
T Consensus 52 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 52 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred CcccccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 444456999999999999987641 24999998653 4999999999999865
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.08 E-value=0.0063 Score=49.95 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHHH
Confidence 3799999999999987642 125999999885 599999999998753
No 28
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.84 E-value=0.011 Score=45.95 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 016093 77 RAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLK 138 (395)
Q Consensus 77 Rg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY-~RSaeQCr~KWKNLKK 138 (395)
....||.+|+..||+....+ . .-|..|+..-.- + .||....++||+||++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~----G------~~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM----G------NHWNSILWSFPF--QKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH----C------SCHHHHHHHSCC--CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH----h------HhHHHHHHhCCC--ccCcccchHHHHHHHHHh
Confidence 35699999999999998865 1 149999865321 3 5999999999999985
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.80 E-value=0.0061 Score=49.47 Aligned_cols=46 Identities=20% Similarity=0.598 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNL 136 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNL 136 (395)
...||.+|...|+++...+-. .-|..||..|. .||+.||+.+|.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 358999999999999875421 24999998874 59999999999875
No 30
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.73 E-value=0.0017 Score=52.53 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=42.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEF 140 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~Y 140 (395)
|.-....||.+|-.+||++...+ +.-|..||..|. .||..||+++|.++.+.+
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~----------G~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEH----------GRNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 44446689999999999988763 123999999985 599999999999887653
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.72 E-value=0.0084 Score=50.48 Aligned_cols=51 Identities=22% Similarity=0.627 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
|.-....||.+|...|+++...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYG----P-----KRWSDIAKHLK----GRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTC----S-----CCHHHHHHHSS----SCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC----C-----CCHHHHHHHhc----CCcHHHHHHHHHHhc
Confidence 444556899999999999887531 1 24999999874 599999999998744
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.44 E-value=0.0062 Score=51.31 Aligned_cols=51 Identities=18% Similarity=0.623 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
|.-....||.+|-..|+++...+- .-|..||..|. .||..||+++|++|.+
T Consensus 75 p~~~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 75 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444566899999999999987642 24999998763 5999999999998864
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.29 E-value=0.0079 Score=51.03 Aligned_cols=51 Identities=14% Similarity=0.424 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
|.-....||.+|-..||+++..+- .-|..||..|. .||..||+++|.++.+
T Consensus 50 p~~~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 50 PAVVKHAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 344455899999999999887532 13999998764 5999999999998764
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.64 E-value=0.023 Score=49.32 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
|.-....||.+|-..|+.+...+- . .-|..||..|. .||+.||+.+|.+..
T Consensus 54 p~~~~~~Wt~eEd~~L~~~v~~~g----~-----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 54 PELIKGPWTKEEDQRVIKLVQKYG----P-----KRWSVIAKHLK----GRIGKQCRERWHNHL 104 (159)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHC----S-----CCHHHHHHTST----TCCHHHHHHHHHHTT
T ss_pred CCcCCCCCChHHHHHHHHHHHHhC----c-----ccHHHHHHHcC----CCCHHHHHHHHHHHh
Confidence 444567999999999999887531 1 23999998874 599999999998753
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.12 E-value=0.02 Score=49.72 Aligned_cols=51 Identities=18% Similarity=0.616 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 74 PKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 74 pskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
|.-....||.+|-..||++...+- .-|..||..|. .||..||+++|+.|.+
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred ccccccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 444567999999999999987642 24999998763 4999999999998764
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.00 E-value=0.015 Score=49.37 Aligned_cols=46 Identities=24% Similarity=0.620 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
..||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 3799999999999887641 124999998873 599999999998765
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.70 E-value=0.43 Score=39.74 Aligned_cols=72 Identities=15% Similarity=0.453 Sum_probs=56.7
Q ss_pred CCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016093 65 GGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (395)
Q Consensus 65 ged~~~~~apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YKKiK 144 (395)
.+-+..++.+.....-||+++-+.+|..+.+ .....+.|..||.+|. +|++.|.+++|..|.+-|.+..
T Consensus 20 ~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~-------~G~s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 20 CANNSKVSSTGEKVVLWTREADRVILTMCQE-------QGAQPHTFSVISQQLG----NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCCCCCCCCCCSSSCHHHHHHHHHHHHH-------TTSCTTTHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHCS
T ss_pred eeccceecCCCCEEEEeccccCHHHHHHHHh-------cCCChhHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHh
Confidence 3444345566777889999999988887665 3355678999999986 5999999999999999999986
Q ss_pred ccC
Q 016093 145 HQD 147 (395)
Q Consensus 145 d~n 147 (395)
...
T Consensus 89 ~~~ 91 (95)
T 1ug2_A 89 ESG 91 (95)
T ss_dssp SSC
T ss_pred ccC
Confidence 554
No 38
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.71 E-value=0.2 Score=39.79 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
...||.+|.++|...... |.. ....-|+.||+.+- .||+++|..+++.|.
T Consensus 8 ~~~WT~eE~k~fe~ALa~----~~~--~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFAS----LPK--HKPGFWSEVAAAVG----SRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHH----SCS--SSSSHHHHHHHHTT----TSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHH----CCC--CCccHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 457999999999887653 322 23468999999875 299999998888774
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.52 E-value=0.11 Score=49.69 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK 138 (395)
...||.+|-..||++...+-.. ....+.|.+||..|. .||..||+++|+++.+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~----r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTR----RTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGG----TTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCcC----ccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 4589999999999988753221 123355999998765 5999999999999653
No 40
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=89.82 E-value=0.052 Score=43.06 Aligned_cols=59 Identities=19% Similarity=0.487 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH 145 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YKKiKd 145 (395)
....-.||.+|-+.+|....+ .....+.|..||.+| +||+.|..++|..|.+-|++-|.
T Consensus 11 ge~vvlWTReeDR~IL~~cq~-------~G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQK-------RGPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 344568999998888876543 334557899999887 59999999999999999998764
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=89.42 E-value=0.63 Score=38.45 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHhc
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGF-DRSPTMCTDKWRNLLKEFKKTK 144 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY-~RSaeQCr~KWKNLKK~YKKiK 144 (395)
..||.+||..|+++..+++-+ |-.|+..+.-.++ .||.++.+.++-.+.+...+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlR----------W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------eeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999875543 6677777765444 5999999999999998877776
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.38 E-value=0.53 Score=35.17 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016093 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (395)
Q Consensus 76 kRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWK 134 (395)
+....||.+|..+|++....+ .+-|..||..|. .||..||...|-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Yy 54 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYYY 54 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHHH
Confidence 456899999999999887753 135999997664 599999987654
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=87.47 E-value=0.49 Score=45.00 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016093 76 KRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLL 137 (395)
Q Consensus 76 kRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLK 137 (395)
+....||.+|...+++....+- + -|..||+.|. .||..||+.-|-+-+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-------K---DW~~IAk~Vg----TKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-------R---DFQAISDVIG----NKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-------S---CHHHHHHHHS----SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-------c---CHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 4567999999999988766531 1 2999999874 599999998775433
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=79.07 E-value=2.1 Score=32.18 Aligned_cols=52 Identities=12% Similarity=0.274 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA-KMREKGFDRSPTMCTDKWRN 135 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISe-kMaekGY~RSaeQCr~KWKN 135 (395)
..+|.+|-..|++.-.++.. .........+|+++++ ++ -..|+.+|+++|.+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 47899999999998876533 1122356799999987 43 35899999999974
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=69.19 E-value=3.8 Score=42.51 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKW 133 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KW 133 (395)
.+....||.+|..++++....+- .-|..||+.+. .||..||+.=+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG----------kdw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT----------TCHHHHHHHHS----SCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHhC----CCCHHHHHHHH
Confidence 35678999999999988776531 23999999875 58999999743
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=63.92 E-value=13 Score=30.73 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHhcc
Q 016093 79 ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKG-FDRSPTMCTDKWRNLLKEFKKTKH 145 (395)
Q Consensus 79 ~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekG-Y~RSaeQCr~KWKNLKK~YKKiKd 145 (395)
..||.+||..|+++..+++-+ |-.|+.+..-.+ ..||.++.+.++-.+.+...+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlR----------w~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLR----------FVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTC----------HHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCC----------eEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 379999999999999986544 344444443222 358999888888888877666653
No 47
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=60.61 E-value=25 Score=25.18 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=44.4
Q ss_pred EEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 265 ISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 265 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
|.||+ |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|..|- +.+|-+|.+..
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 71 (76)
T 1ndd_A 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYK--ILGGSVLHLVL 71 (76)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 44555 32 44456667889999999999999876655444432 3466688898884 45777776643
No 48
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.94 E-value=31 Score=27.36 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=48.1
Q ss_pred eEEEEec--CcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 263 KVISVKC--GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 263 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
--|.||+ |.++-.|--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|.|..
T Consensus 18 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 87 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 87 (106)
T ss_dssp EEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETT----EECCTTSCHHHHT--CCTTEEEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcC--CCCCCEEEEEE
Confidence 4467776 3465666677899999999999999876665554432 3466678888885 45787777654
No 49
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=54.42 E-value=38 Score=24.16 Aligned_cols=58 Identities=14% Similarity=0.239 Sum_probs=39.9
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
++-.+.-+-|-..+|+.|...+++-..+--++-.. +.|+-+.+|..|- +.+|-+|.+.
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g----~~L~d~~tL~~~~--i~~g~~i~l~ 70 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQRESTLHLV 70 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 44455667789999999999999876654444332 2456678888884 4567777654
No 50
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.87 E-value=87 Score=25.97 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=47.0
Q ss_pred ceEEEEecC--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 262 GKVISVKCG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 262 g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
.--|.||.- .++-.|--+-|-..+|+.|...+++-..+--.+-.- +.|+-|..|+.|-+ .+|-+|-|..
T Consensus 32 ~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~dygI--~~gstI~lv~ 102 (125)
T 1j8c_A 32 IIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAG----KILKDQDTLIQHGI--HDGLTVHLVI 102 (125)
T ss_dssp CEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETT----EEESTTSCGGGTTC--SSSEEEEEEE
T ss_pred cEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECC----EEcCCCCCHHHcCC--CCCCEEEEEe
Confidence 345677763 344556667899999999999998866554443321 24666788888854 5788877754
No 51
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.59 E-value=41 Score=25.04 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHH-HHHcCCCCCHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAK-MREKGFDRSPTMCT 130 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISek-MaekGY~RSaeQCr 130 (395)
.|......||.+|..++.+....+-. -|..|+.. |. .+|..||-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK----------df~~I~~~~v~----~Kt~~~~v 48 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK----------NFFRIRKELLP----NKETGELI 48 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS----------CHHHHHHHSCT----TSCHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc----------cHHHHHHHHcC----CCcHHHHH
Confidence 35555689999999888776554221 28888875 32 48999995
No 52
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=40.55 E-value=48 Score=27.64 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=21.1
Q ss_pred ccceecchhhHHHHHHhhcccccee
Q 016093 348 EDKTFYTEEDYREFLARHGWTCLRE 372 (395)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (395)
....+||.++++..|.+.||+.++.
T Consensus 155 ~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 155 ATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp SCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhhccCCHHHHHHHHHHCCCcEEEE
Confidence 4557899999999999999988743
No 53
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.32 E-value=77 Score=23.22 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=41.9
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|.|.+
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 74 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IHNHSALYLLL 74 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETB----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 34455567789999999999999877765544432 3467788898884 56777777653
No 54
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=39.31 E-value=1e+02 Score=25.85 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.8
Q ss_pred ceecchhhHHHHHHhhc-ccccee
Q 016093 350 KTFYTEEDYREFLARHG-WTCLRE 372 (395)
Q Consensus 350 ~~~~~~~~~~~~~~~~~-~~~~~~ 372 (395)
-.+|+.++++..|.+.| |+.++.
T Consensus 156 ~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 156 YNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp ECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred ccCCCHHHHHHHHHhCCCcEEEEE
Confidence 45789999999999999 988754
No 55
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=39.02 E-value=1.5e+02 Score=25.42 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=22.0
Q ss_pred ccccceecchhhHHHHHHhhcccccee
Q 016093 346 HTEDKTFYTEEDYREFLARHGWTCLRE 372 (395)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (395)
+.....++|.+.++..|.+.||..++.
T Consensus 209 ~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 209 KEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp TTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred ccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 334556889999999999999998754
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=38.83 E-value=77 Score=24.44 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=45.3
Q ss_pred EEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 016093 265 ISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 338 (395)
Q Consensus 265 ~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (395)
|.||. |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|-+..-.
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~~~ 73 (98)
T 1yx5_B 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVLRL 73 (98)
T ss_dssp EEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEECC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEEeC
Confidence 45555 32 34445556788999999999998876655444432 2456688899884 4578788776543
No 57
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=37.55 E-value=24 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 016093 126 PTMCTDKWRNLLKEFKKTKHQ 146 (395)
Q Consensus 126 aeQCr~KWKNLKK~YKKiKd~ 146 (395)
+..|+.||+||...|+.+-..
T Consensus 13 srk~rakfkn~lqh~r~vaaa 33 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREVAAA 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999998543
No 58
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=37.50 E-value=89 Score=25.28 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=32.5
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcce
Q 016093 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNY 322 (395)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (395)
++-++.-+-|-..+|+.|...+++-..+--++-.. +.|+-+..|..|
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g----~~L~d~~tL~~~ 59 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDY 59 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGG
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECC----eECcCcccHHHh
Confidence 44556667889999999999999876554443321 235667777777
No 59
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=35.91 E-value=79 Score=27.13 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=59.9
Q ss_pred ceEEEEecCc----------ceeeecccCCHHHHHHHHHHhhc--ccccceeeccccchhhhhcccCCCCcceEEec---
Q 016093 262 GKVISVKCGD----------YTRRIGIDGTPDAIKEAIKSAFG--IRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHL--- 326 (395)
Q Consensus 262 g~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 326 (395)
|+|+-|..|. ..+-+|||-++++|+.|-+.+-. +..+=.|...|-.+ +. |-+.|-+-+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~---~~~~fD~v~~~~ 140 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT----WR---PTELFDLIFDYV 140 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT----CC---CSSCEEEEEEES
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc----CC---CCCCeeEEEECh
Confidence 4566655553 23568999999999988765532 21222233322211 10 222332221
Q ss_pred ---------------------CCCceeEEeecCCCCCcccccccceecchhhHHHHHHhhccccceeccCcccccCc
Q 016093 327 ---------------------DEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNM 382 (395)
Q Consensus 327 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (395)
..|=.+-++.|...++... ...+++.++++..|.+.||..++-..-.+.+...
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 214 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG---PPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTR 214 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC---SSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTT
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC---CCccCCHHHHHHHHHHcCCeEEEEEecCCccccc
Confidence 1132333444554433222 2245899999999999999987655544444443
No 60
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=35.83 E-value=70 Score=23.97 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=46.4
Q ss_pred EEEEecC---cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 264 VISVKCG---DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 264 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.||+- .++=.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+.+|+.|-+ +|-+|.+++
T Consensus 19 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~i---~g~~i~lv~ 87 (88)
T 4eew_A 19 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVE 87 (88)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----EECCCCCcHHHcCC---CCcEEEEEE
Confidence 4677762 234455666788999999999999877766554422 34666889999866 488887754
No 61
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=35.72 E-value=91 Score=22.73 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=41.0
Q ss_pred eeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 273 TRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
+-.+--+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|.|.+
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~~ 74 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKWSTLFLLL 74 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTGGGT--CCTTCEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 3345556789999999999999877665444332 3467788899884 56777777653
No 62
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=35.54 E-value=97 Score=22.61 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=39.3
Q ss_pred ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 276 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.|- +.+|-+|.+.+
T Consensus 21 v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~l~l~~ 75 (79)
T 3phx_B 21 VRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG----KPLEDQLPLGEYG--LKPLSTVFMNL 75 (79)
T ss_dssp ECTTSBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGT--CCTTCEEEEEE
T ss_pred ECCcChHHHHHHHHHhhcCCCHHHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 3445688999999999999877665554432 3466788899884 56777777653
No 63
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=35.47 E-value=14 Score=31.46 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=27.2
Q ss_pred hcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecCC
Q 016093 293 FGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDE 339 (395)
Q Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (395)
|.+|| ||-+-+.+.+++|+.|- .|+|.+|+.|+|.++|.
T Consensus 80 FE~RthKRlIdI~~~~~tv~~l~--------~l~lp~GV~ieI~i~~~ 119 (120)
T 2xzm_J 80 FEMRIYKRIIDLTCNVPDVKTIT--------NFRIDPGVEIELTMTAD 119 (120)
T ss_dssp EEEEEEEEEEEEEECHHHHHHHS--------CSCCCSSEEEEEEEEC-
T ss_pred eEEEEEEEEEEEeCCcHHHHHHH--------cCcCCCCCEEEEEEecc
Confidence 55565 45556666666777772 45788999999998874
No 64
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=35.18 E-value=1.1e+02 Score=23.22 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=42.5
Q ss_pred ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 272 YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|..|- +.+|-+|-|.+
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~i~l~~ 72 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 72 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC----EECCCCCcHHHcC--CCCCCEEEEEE
Confidence 33345556688999999999999987776555432 3467788999985 46777777764
No 65
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=34.79 E-value=77 Score=23.45 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=44.4
Q ss_pred eEEEEec-C--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 263 KVISVKC-G--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 263 ~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
--|.||. . .++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|-|.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G----~~L~d~~tL~~~~--i~~~~~i~l~ 82 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADYK--ILGGSVLHLV 82 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETT----EECCTTSBGGGGT--CCTTCEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 3466664 2 233345556688999999999999876655444332 3466788899884 5677777664
No 66
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=34.68 E-value=1.1e+02 Score=21.88 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=42.5
Q ss_pred EEEecCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 265 ISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 265 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
|.||++. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|.+|+.|- +.+|-+|-|.
T Consensus 7 i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~ 73 (77)
T 2bwf_A 7 IHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESYH--IQDGHSVHLV 73 (77)
T ss_dssp EEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEE
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECC----eEcCCCCCHHHcC--CCCCCEEEEE
Confidence 4566532 33344556788999999999998866554433322 3466778898885 4577777653
No 67
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=33.52 E-value=59 Score=25.19 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=44.3
Q ss_pred eEEEEecCc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 263 KVISVKCGD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 263 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
--|.||+|. ++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|-|.+
T Consensus 20 m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~y~--I~~gstI~lv~ 88 (93)
T 2l7r_A 20 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAG----APLEDEATLGQCG--VEALTTLEVAG 88 (93)
T ss_dssp CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETT----EECCTTSBHHHHT--CCSSCEEEEEC
T ss_pred EEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 457788863 22233345678999999999988765554444332 2466678888884 56777777653
No 68
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=32.67 E-value=13 Score=31.59 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=20.2
Q ss_pred hcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 016093 293 FGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 338 (395)
Q Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (395)
|.+|| ||-+-+.+.+++|+.|- .|+|.+|+.|+|.++|
T Consensus 80 FE~RthKRlIdI~~~~~~v~~l~--------~~~lp~GV~ieI~i~~ 118 (119)
T 2zkq_j 80 FQMRIHKRLIDLHSPSEIVKQIT--------SISIEPGVEVEVTIAD 118 (119)
T ss_dssp EEEEEBCCCCCBCSCTHHHHHHH--------HCCCCSSEEEEEC---
T ss_pred eEeEEEEEEEEEeChHHHHHHHH--------cCcCCCCCEEEEEEec
Confidence 33443 33344444445555543 3567799999998876
No 69
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=32.15 E-value=1.3e+02 Score=23.71 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=46.1
Q ss_pred eEEEEec-C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 263 KVISVKC-G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 263 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
--|.||. | .++-.|.-+-|-..+|+.|....++-..+--++-.- +.|+-+..|+.|- +.+|-+|-|..
T Consensus 26 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~g--I~~g~~I~l~~ 95 (101)
T 2klc_A 26 MKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAG----KILKDQDTLSQHG--IHDGLTVHLVI 95 (101)
T ss_dssp EEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETT----EEECTTCCTGGGT--CCTTCEEEEEE
T ss_pred EEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHcC--CCCCCEEEEEE
Confidence 3456665 2 344456667899999999999998866654444332 3466788999985 46787777643
No 70
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=30.64 E-value=96 Score=23.29 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred EEEecC---cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 016093 265 ISVKCG---DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 338 (395)
Q Consensus 265 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (395)
|.||+- .++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|-+ +|-+|.+++-.
T Consensus 8 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G----k~L~d~~tL~~~~i---~g~~i~l~~~~ 77 (90)
T 4dwf_A 8 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG----RVLQDDKKLQEYNV---GGKVIHLVERA 77 (90)
T ss_dssp EEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBGGGGTC---TTEEEEEEECC
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC----eECCCCCCHHHcCC---CCcEEEEEecC
Confidence 566652 233345556788999999999999877665554432 34667889999976 48888877643
No 71
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=29.82 E-value=1.1e+02 Score=23.46 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016093 73 APKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134 (395)
Q Consensus 73 apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWK 134 (395)
++.+....||.+.-..+++.....- ..+..++.|.+.|...| .|..|++.-.-
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHLQ 54 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHLQ 54 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence 4556678999999999998887532 23467888888887555 67777776544
No 72
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.05 E-value=83 Score=24.95 Aligned_cols=66 Identities=24% Similarity=0.383 Sum_probs=46.1
Q ss_pred EEEEecCccee--eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 264 VISVKCGDYTR--RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 264 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
-|.||++.-+- .+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.| .+.+|-+|-|.
T Consensus 30 ~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~--gI~~g~tI~lv 97 (101)
T 3m63_B 30 NIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSG----KILKDDQTVESY--HIQDGHSVHLV 97 (101)
T ss_dssp CEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETT----EECCTTSBTTTT--TCCTTEEEEEC
T ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECC----EECCCcCcHHHC--CCCCCCEEEEE
Confidence 46788754333 44445678999999999999877765554432 456778889988 45678777664
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.00 E-value=1.4e+02 Score=25.20 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=43.4
Q ss_pred EEEEe-cCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 264 VISVK-CGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 264 ~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
-|.|| ++. ++=+|.-+-|-..+|+.|...+++-..+--++-.- +.|+.+..|..|- +.+|-+|.+.
T Consensus 22 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g----~~L~d~~tL~~~~--i~~~~~l~l~ 90 (172)
T 3u30_A 22 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLV 90 (172)
T ss_dssp EEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTGGGT--CCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECC----ccccccCCHhHcC--Ccccceeeee
Confidence 45666 443 44455566788999999999999987766555432 4477788898884 2344444433
No 74
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.83 E-value=1.3e+02 Score=21.77 Aligned_cols=67 Identities=10% Similarity=0.265 Sum_probs=44.1
Q ss_pred eEEEEec--Cc-ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEe
Q 016093 263 KVISVKC--GD-YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVC 335 (395)
Q Consensus 263 ~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (395)
--|.||. |. ++-.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|+.|- +.+|-+|-+.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~ 77 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKG----KALADGKRLSDYS--IGPNSKLNLV 77 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETT----EECCTTSBGGGGT--CCSSBCCEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----eECCCCCcHHHcC--CCCCCEEEEE
Confidence 3455663 32 45566677899999999999998866554444332 2356678888884 4567666553
No 75
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=27.68 E-value=1.3e+02 Score=23.40 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=45.2
Q ss_pred EEEEec-C--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 264 VISVKC-G--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 264 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.||. . .++=.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..|- +.+|-+|.|++
T Consensus 24 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~--i~~g~~i~l~~ 93 (98)
T 4hcn_B 24 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 93 (98)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTCBSGGGT--CCTTEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC----EECCCCCcHHHCC--CCCCCEEEEEE
Confidence 355663 3 233344455688999999999999877665444332 3467788999885 56787877753
No 76
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.36 E-value=2e+02 Score=21.65 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=41.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhc
Q 016093 72 RAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK 144 (395)
Q Consensus 72 ~apskRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~KWKNLKK~YKKiK 144 (395)
+.+......+|.+....|-..+.. ........=+.||..| ..+..|++..|.|=...+|+.+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~------~~yp~~~~r~~LA~~l-----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEK------QKYLSTPDRIDLAESL-----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHh-----CCCHHHeeeccHHHHHHhhccc
Confidence 333444567899988888777754 1223444456666665 4789999999999887666553
No 77
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=27.13 E-value=1.3e+02 Score=30.07 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=52.9
Q ss_pred cceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecCCC
Q 016093 261 GGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDES 340 (395)
Q Consensus 261 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (395)
.|+++.|..+.-| +.++|.+ ++..|+- ..+-.||+-.| +.+|-|-++.-.+++|..+ + |.+.
T Consensus 261 ~G~~llvg~s~Rt-------n~~~ie~-L~~~L~~-~~~Vi~l~~~d------~~~~HLDtv~~~v~~~~vl-v--~~~~ 322 (423)
T 1jdw_A 261 AGRDIFAQRSQVT-------NYLGIEW-MRRHLAP-DYRVHIISFKD------PNPMHIDATFNIIGPGIVL-S--NPDR 322 (423)
T ss_dssp ETTEEEECCCSSC-------CHHHHHH-HHHHHTT-TCEEEECCBSS------CCSSCSTTTEEEEETTEEE-E--CTTS
T ss_pred eCCEEEEEecccC-------CHHHHHH-HHHHhCC-CCEEEEEecCC------CCCCchhheEEecCCCeEE-E--ecch
Confidence 4777888777444 6788886 8888864 46788987543 4577777777777777532 3 3333
Q ss_pred CCcccccccceecchhhHHHHHHhhccccc
Q 016093 341 DHISVHTEDKTFYTEEDYREFLARHGWTCL 370 (395)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (395)
. +.+.+.|..+||..+
T Consensus 323 ~--------------~~~~~~L~~~~~~iI 338 (423)
T 1jdw_A 323 P--------------CHQIDLFKKAGWTII 338 (423)
T ss_dssp C--------------BTTHHHHHHTTCEEE
T ss_pred h--------------HHHHHHHHhCCCEEE
Confidence 2 267788888888765
No 78
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.96 E-value=99 Score=23.11 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=46.6
Q ss_pred eEEEEec--C--ccee-eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 263 KVISVKC--G--DYTR-RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 263 ~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
--|.||. | .++= .+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|.+.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~g----k~L~d~~tL~~~~--i~~g~~i~l~~ 80 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRG----KQLENGYTLFDYD--VGLNDIIQLLV 80 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTCEEEEEE
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECC----eECCCCCCHHHCC--CCCCCEEEEEE
Confidence 4577776 5 2554 36667889999999999998876665554432 3456677888874 45777777654
No 79
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=26.74 E-value=1.3e+02 Score=22.83 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=40.0
Q ss_pred eecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 275 RIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
.+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|..| .+.+|-+|-+.+
T Consensus 16 ~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G----k~L~D~~tL~~~--~i~~g~~l~l~~ 71 (88)
T 4fbj_B 16 DIEPTDKVERIKERVEEKEGIPPQQQRLIYSG----KQMNDEKTAADY--KILGGSVLHLVL 71 (88)
T ss_dssp ECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTSBTTTT--TCCTTCEEEEEC
T ss_pred EECCCCCHHHHHHHHHHHHCcChhHEEEEECC----eECCCCCcHHHc--CCCCCCEEEEEE
Confidence 34445688999999999999877665444322 346678899998 456787887754
No 80
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=26.25 E-value=2.1e+02 Score=21.56 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=46.0
Q ss_pred EEEEe-cC--cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 264 VISVK-CG--DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 264 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.|| ++ .++=.|.-+-|-..+|+.|...+++-..+--++-.- +.|+-|..|+.|- +.+|-+|-|.+
T Consensus 19 ~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G----k~L~D~~tL~~~g--i~~g~~i~l~~ 88 (91)
T 3v6c_B 19 QIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 88 (91)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT----EECCTTCBTGGGT--CCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC----eECCCcCcHHHCC--CCCCCEEEEEE
Confidence 45565 22 234445566788999999999999877765444432 3477788999985 56787887753
No 81
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=26.20 E-value=1e+02 Score=26.55 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHH----cC--------CC-CCHHHHHHHHHHHHHH
Q 016093 82 VQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRE----KG--------FD-RSPTMCTDKWRNLLKE 139 (395)
Q Consensus 82 T~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMae----kG--------Y~-RSaeQCr~KWKNLKK~ 139 (395)
|-+|+..|+.....+...+.........=..|+..|.+ .+ |. .|......||++|.+-
T Consensus 43 sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~l 113 (129)
T 1wlx_A 43 TIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113 (129)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHH
Confidence 57899999988777666665443333333334444444 34 43 6799999999999864
No 82
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=25.71 E-value=4 Score=32.59 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016093 78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDK 132 (395)
Q Consensus 78 g~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMaekGY~RSaeQCr~K 132 (395)
+..||.+|-++|-.... .|. +-...-|+.||+.+- .||..+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa----~yp--~~tpdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALS----FTN--KDTPDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTS----SSC--SSCCSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHH----HCC--CCCCcHHHHHHHHcC----CCCHHHHHHH
Confidence 56899999988765543 222 223567999998765 3999999754
No 83
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.89 E-value=1.1e+02 Score=24.06 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=45.4
Q ss_pred eEEEEec--CcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 263 KVISVKC--GDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 263 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
--|.||+ |.++-.+--+-|-..+|+.|....++=..+--++-.- +.|+-+..|..|- +.+|-+|-|..
T Consensus 23 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~yg--I~~gstI~l~~ 92 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAG----KILKDPDSLAQCG--VRDGLTVHLVI 92 (100)
T ss_dssp EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT----EECCTTSBHHHHT--CCTTCEEEEEE
T ss_pred EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEE
Confidence 3466666 3355556667889999999999998766554443321 3456677888884 46777777654
No 84
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=24.53 E-value=2e+02 Score=20.72 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=44.8
Q ss_pred EEEEec--Ccc--eee-ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 264 VISVKC--GDY--TRR-IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 264 ~~~~~~--~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.||. |.- +=. +--+-|-..+|+.|....++-..+--++-.- +.|+-+..|+.|- +.+|-+|-+++
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g----~~L~d~~tL~~~~--i~~g~~i~l~~ 75 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRG----KQMEDGHTLFDYE--VRLNDTIQLLV 75 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTCBTTTTT--CCTTCEEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 356665 432 334 5566889999999999998866655444332 3366678888885 45777776653
No 85
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.06 E-value=1.8e+02 Score=22.36 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=40.3
Q ss_pred ceeeecccCCHHHHHHHHHHhh---cccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 016093 272 YTRRIGIDGTPDAIKEAIKSAF---GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 338 (395)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (395)
++-.+.-+-|-..+|+.|...+ ++-..+--++-.- +.|+-|..|+.|- +.+|-+|-|..-.
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~G----k~L~D~~tL~~yg--I~~g~~i~l~~~~ 76 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAG----KILNDDTALKEYK--IDEKNFVVVMVTK 76 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETT----EECCTTSBGGGGT--CCSSSEEEEEESS
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECC----EECCCcCcHHHCC--CCCCCEEEEEEeC
Confidence 3445556788999999999985 4544443333221 3466678899884 5688888876644
No 86
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=23.99 E-value=23 Score=28.74 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=25.8
Q ss_pred hhcccc-cceeeccccc-hhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 292 AFGIRT-KRAFWLEDED-QIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 292 ~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.+|| ||-+-+.+.+ ++|+.| | .++|.+|+.|+|.+
T Consensus 60 qfE~rthkRlIdi~~~~~~~v~~l---~-----~~~lp~GV~vev~~ 98 (98)
T 3r8n_J 60 QYEIRTHLRLVDIVEPTEKTVDAL---M-----RLDLAAGVDVQISL 98 (98)
T ss_dssp EEEEECBCCCCCBSCCCTTTTTTT---T-----TCCCCTTCEEECCC
T ss_pred hEEEEEEEEEEEEeCCCHHHHHHH---H-----cCcCCCCcEEEEEC
Confidence 466666 5666676665 467776 3 57888999998853
No 87
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.99 E-value=2.5e+02 Score=21.86 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHH----HcCCC------CCHHHHHHHHHHHHHHHHHhc
Q 016093 75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMR----EKGFD------RSPTMCTDKWRNLLKEFKKTK 144 (395)
Q Consensus 75 skRg~~WT~eET~lLIeLw~E~e~~F~~skrnk~LWEeISekMa----ekGY~------RSaeQCr~KWKNLKK~YKKiK 144 (395)
......|+..+...|-..|.. ........-++||..|. +.|.. .+..|++..|.|=....|+..
T Consensus 8 rr~R~~ft~~ql~~Le~~F~~------~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 8 RGSRFTWRKECLAVMESYFNE------NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCSCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 334568999998888777765 22355566677887776 22322 899999999999988887764
Q ss_pred c
Q 016093 145 H 145 (395)
Q Consensus 145 d 145 (395)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 3
No 88
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.95 E-value=2.1e+02 Score=23.01 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=47.2
Q ss_pred ceEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 262 GKVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 262 g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
|..|.||. | .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-+..|..|- +.+|-+|.+++
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g----~~L~d~~tL~~~~--i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG----KQLEDGRTLSDYN--IQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT----EECCTTSBTGGGT--CCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECC----EECCCCCCHHHcC--CCCCCEEEEEE
Confidence 35566764 2 456667777889999999999988866555554432 3456677888884 56777777654
No 89
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=23.14 E-value=20 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=34.9
Q ss_pred cceEEEEecCcceeeecccCCH--HHHHHHHHHhhcccccceee-ccccc
Q 016093 261 GGKVISVKCGDYTRRIGIDGTP--DAIKEAIKSAFGIRTKRAFW-LEDED 307 (395)
Q Consensus 261 ~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~ 307 (395)
.+.++.|.--||....||+.+. ..||+|+++.+ +|.|+ +++++
T Consensus 42 ~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~----~r~~~~i~~~~ 87 (132)
T 1hkq_A 42 KDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLF----NRDIRRYVKGK 87 (132)
T ss_dssp GGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHH----TCCEEEEETTE
T ss_pred CCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHh----hCeEEEEecCC
Confidence 4678999999999999998654 67888888777 57888 88875
No 90
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.82 E-value=2e+02 Score=21.17 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=45.4
Q ss_pred ceEEEEec--C-cceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 262 GKVISVKC--G-DYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 262 g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
.--|.||. | .++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-|..|..|- +.+|-+|.|..
T Consensus 7 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~G----k~L~d~~tL~~~~--i~~g~~i~l~~ 78 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG----QVLQDWLGLGIYG--IQDSDTLILSK 78 (87)
T ss_dssp SEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETT----EECCSSSBHHHHT--CCTTEEEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECC----EEccCCCCHHHCC--CCCCCEEEEEE
Confidence 34567776 3 234455667889999999999988766554444332 2356677888774 45777777654
No 91
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.61 E-value=1.4e+02 Score=23.32 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=46.9
Q ss_pred ceEEEEecCc--ceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccC-CCCcceEEecCCCceeEEee
Q 016093 262 GKVISVKCGD--YTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRD-MPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 262 g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (395)
.--|.||+.. ++-.+--+-|-..+|+.|....++-..+--++-.- +.|+-| ..|+.|- +.+|-+|-|.+
T Consensus 15 ~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~~tL~~yg--I~~gstl~lv~ 86 (94)
T 2kan_A 15 KIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSG----IELADDYRNLNEYG--ITEFSEIVVFL 86 (94)
T ss_dssp CEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETT----EEECCTTSBHHHHT--CCTTEEEEEEE
T ss_pred CEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECC----EECCCCcccHHHCC--CCCCCEEEEEE
Confidence 3457888754 55666667888999999999998866554443321 345556 7888885 45777766643
No 92
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=22.30 E-value=26 Score=29.85 Aligned_cols=38 Identities=29% Similarity=0.493 Sum_probs=22.4
Q ss_pred hcccc-cceeeccccchhhhhcccCCCCcceEEecCCCceeEEeecC
Q 016093 293 FGIRT-KRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYD 338 (395)
Q Consensus 293 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (395)
|.+|| ||-+-|.+-+++|+.|-+ |.|.+|+.|+|.+-|
T Consensus 82 FE~RtHKRlIdI~~~~~~v~~l~~--------~~lp~GV~vei~i~~ 120 (121)
T 3u5c_U 82 YEMRIHKRYIDLEAPVQIVKRITQ--------ITIEPGVDVEVVVAS 120 (121)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHH--------SSCCTTCEEEECCSC
T ss_pred eEEEEEEEEEEecCCHHHHHHHHc--------CcCCCCCEEEEEEcC
Confidence 33443 344444445555555532 567888999887765
No 93
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=22.29 E-value=1.5e+02 Score=23.56 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=41.0
Q ss_pred ecccCCHHHHHHHHHHhhcccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEeec
Q 016093 276 IGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLY 337 (395)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (395)
+.-+-|-..+|+.|...+++-..+--++-.- +.|+-+..|+.| .+.+|-+|-+.+-
T Consensus 18 v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G----k~L~D~~tL~~~--~i~~g~~i~lv~~ 73 (106)
T 3m62_B 18 LEPSNTILETKTKLAQSISCEESQIKLIYSG----KVLQDSKTVSEC--GLKDGDQVVFMVS 73 (106)
T ss_dssp CCTTSBHHHHHHHHHHTTTSCGGGCEEEETT----EECCTTSBTTTT--TCCTTCEEEEECC
T ss_pred ECCCCcHHHHHHHHHHHHCCChhhEEEEECC----EECCCcCCHHHc--CCCCCCEEEEEEc
Confidence 3445578999999999999877666555432 246678899998 5678888887654
No 94
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=20.34 E-value=25 Score=31.19 Aligned_cols=18 Identities=44% Similarity=0.687 Sum_probs=15.2
Q ss_pred cCCCCcceEEecCCCcee
Q 016093 315 RDMPVGNYTLHLDEGLTI 332 (395)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (395)
-+-|-|+|||+||-|.=+
T Consensus 130 t~~ptG~YTLnL~GGyW~ 147 (148)
T 1ut1_A 130 TNTPPGNYTLTLTGGYWA 147 (148)
T ss_dssp TTCCSEEEEEEEEEEEEE
T ss_pred ccCCCccEEEEecccEec
Confidence 478999999999988644
No 95
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.01 E-value=2.6e+02 Score=20.36 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=42.2
Q ss_pred EEEEec--Cc-ceeeecccCCHHHHHHHHHHhh---cccccceeeccccchhhhhcccCCCCcceEEecCCCceeEEee
Q 016093 264 VISVKC--GD-YTRRIGIDGTPDAIKEAIKSAF---GIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCL 336 (395)
Q Consensus 264 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (395)
-|.||. |. ++-.+.-+-|-..+|+.|...| ++-..+--++-.- +.|+-+..|..|- +.+|-+|-|..
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~G----k~L~D~~tL~~~~--i~~g~~i~l~~ 79 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAG----KILSDDVPIRDYR--IDEKNFVVVMV 79 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETT----EECCTTSBGGGGC--CCTTSEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECC----EECcCCCCHHHcC--CCCCCEEEEEE
Confidence 356665 32 4445666788999999999974 4444433332221 2466678888884 56787777653
Done!