BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016094
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 290/391 (74%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V+ + R++GP A ILAIGTATP +C YQ+DY D++F+VT SEH LK+KF RI
Sbjct: 588 MASVEEFRNAQRAKGP-ATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRI 646
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I+KRY +LTEE+L+E+PN+ Y APSL+ R ++ EVPKLGKEAALKA+KEWGQ
Sbjct: 647 CDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQ 706
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHL+F GV+MPGAD +L NLLGLEPSV R+M+Y QGCY GG V+R AKD+AE
Sbjct: 707 PKSKITHLVFCTTSGVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAE 766
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC +ITV+ F P+E LD LVGQ +S+ ERPLFQ
Sbjct: 767 NNAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISI-ERPLFQ 825
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++S +Q +PN+ + G+L+E+G + L ++P +I + ++K L A P+GISDWNSL
Sbjct: 826 LVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSL 885
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILD VE L L K+KL A+R+ LSEYGN+ + VLFILD++RKKS + +
Sbjct: 886 FWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGER 945
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
ATTGEGL++GVLFGFGPG+T+ETVVL SIP+
Sbjct: 946 ATTGEGLDWGVLFGFGPGLTIETVVLHSIPM 976
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/391 (57%), Positives = 281/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QGC+ GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 280/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 280/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 280/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/391 (57%), Positives = 280/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/381 (58%), Positives = 277/381 (72%), Gaps = 2/381 (0%)
Query: 11 HRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRY 70
R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+C++S I++RY
Sbjct: 10 QRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRY 68
Query: 71 FYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIF 130
YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQP SKITHLI
Sbjct: 69 MYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 131 GAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVV 190
GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AENN GARVLVV
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 191 CCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVP 250
C ++T + F P++ LD LVGQ + E+P+F+++ +Q P
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWTAQTIAP 247
Query: 251 NTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKV 310
++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+F+I HPGG
Sbjct: 248 DSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPA 307
Query: 311 ILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYG 370
ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+ TTGEGLE+G
Sbjct: 308 ILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWG 367
Query: 371 VLFGFGPGITVETVVLRSIPI 391
VLFGFGPG+T+ETVVLRS+ I
Sbjct: 368 VLFGFGPGLTIETVVLRSVAI 388
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 279/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + HL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/376 (57%), Positives = 273/376 (72%), Gaps = 1/376 (0%)
Query: 18 AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEEI 77
A ++AIGTA PPNC+YQAD+PDF+FRVTNS+H I LK+KF+R+CE S I KRY ++TEEI
Sbjct: 13 ATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEI 72
Query: 78 LKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVD 137
LKENPN++ Y+A SL+ RH M ++ V +LGKEAALKAIKEWGQP SKITHLI + GVD
Sbjct: 73 LKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAGVD 132
Query: 138 MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVL 197
MPGAD +L LL L+PSV R M Y GCY GG V+R AKDIAENN GARVL+VC ++T
Sbjct: 133 MPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTT 192
Query: 198 HFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNVV 257
F P+E LD ++GQ +++ ERP+F+++S +Q VP + +
Sbjct: 193 CFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTV-ERPIFELVSTAQTIVPESHGAIE 251
Query: 258 GHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKVILDQVEQ 317
GHL E G + L K +P +I I L+DA +P+ ISDWNSLF+I HPGG ILDQV
Sbjct: 252 GHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTA 311
Query: 318 NLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGP 377
+GL KEKL +R L +YGN+ + +V FI+D++RKKS E +ATTGEGLE+GVLFGFGP
Sbjct: 312 KVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGP 371
Query: 378 GITVETVVLRSIPIDS 393
GITVETVVLRS+P+ S
Sbjct: 372 GITVETVVLRSVPVIS 387
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/376 (57%), Positives = 273/376 (72%), Gaps = 1/376 (0%)
Query: 18 AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEEI 77
A ++AIGTA PPNC+YQAD+PDF+FRVTNS+H I LK+KF+R+CE S I KRY ++TEEI
Sbjct: 13 ATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEI 72
Query: 78 LKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVD 137
LKENPN++ Y+A SL+ RH M ++ V +LGKEAALKAIKEWGQP SKITHLI + GVD
Sbjct: 73 LKENPNIAAYEATSLNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKITHLIVCCLAGVD 132
Query: 138 MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVL 197
MPGAD +L LL L+PSV R M Y GCY GG V+R AKDIAENN GARVL+VC ++T
Sbjct: 133 MPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTT 192
Query: 198 HFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNVV 257
F P+E LD ++GQ +++ ERP+F+++S +Q VP + +
Sbjct: 193 CFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTV-ERPIFELVSTAQTIVPESHGAIE 251
Query: 258 GHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKVILDQVEQ 317
GHL E G + L K +P +I I L+DA +P+ ISDWNSLF+I HPGG ILDQV
Sbjct: 252 GHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTA 311
Query: 318 NLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGP 377
+GL KEKL +R L +YGN+ + +V FI+D++RKKS E +ATTGEGLE+GVLFGFGP
Sbjct: 312 KVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFGP 371
Query: 378 GITVETVVLRSIPIDS 393
GITVETVVLRS+P+ S
Sbjct: 372 GITVETVVLRSVPVIS 387
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/381 (57%), Positives = 276/381 (72%), Gaps = 2/381 (0%)
Query: 11 HRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRY 70
R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+C++S I++RY
Sbjct: 10 QRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRY 68
Query: 71 FYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIF 130
YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQP SKITHLI
Sbjct: 69 MYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 131 GAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVV 190
GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AENN GARVLVV
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 191 CCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVP 250
C ++T + F P++ LD LVGQ + E+P+F+++ +Q P
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWTAQTIAP 247
Query: 251 NTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKV 310
++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+F+I PGG
Sbjct: 248 DSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAQPGGPA 307
Query: 311 ILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYG 370
ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+ TTGEGLE+G
Sbjct: 308 ILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWG 367
Query: 371 VLFGFGPGITVETVVLRSIPI 391
VLFGFGPG+T+ETVVLRS+ I
Sbjct: 368 VLFGFGPGLTIETVVLRSVAI 388
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/381 (57%), Positives = 276/381 (72%), Gaps = 2/381 (0%)
Query: 11 HRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRY 70
R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+C++S I++RY
Sbjct: 9 QRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRY 67
Query: 71 FYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIF 130
YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQP SKITHLI
Sbjct: 68 MYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 127
Query: 131 GAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVV 190
GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AENN GARVLVV
Sbjct: 128 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 187
Query: 191 CCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVP 250
C ++T + F P++ LD LVGQ + E+P+F+++ +Q P
Sbjct: 188 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFEMVWTAQTIAP 246
Query: 251 NTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKV 310
++E + GHL+E G + L KD+P I+ K I K L +A P+GISD+NS+F+I HPGG
Sbjct: 247 DSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPA 306
Query: 311 ILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYG 370
ILDQVEQ L L EK+ A+R LSEYG + + VLFILD++RKKST+ TTGEGLE+G
Sbjct: 307 ILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKKSTQNGLKTTGEGLEWG 366
Query: 371 VLFGFGPGITVETVVLRSIPI 391
VLFGFGPG+T+ETVVLRS+ I
Sbjct: 367 VLFGFGPGLTIETVVLRSVAI 387
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 279/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + HL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 279/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + HL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/391 (56%), Positives = 279/391 (71%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 1 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR M++ EVP+LGKEAA+KAIKEWGQ
Sbjct: 60 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQ 119
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI GVDMPGAD +L LLGL P V R M+Y QG + GG V+R AKD+AE
Sbjct: 120 PKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAE 179
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 180 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 238
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + HL+E G + L KD+P I+ K I K L +A P+GISD+NS+
Sbjct: 239 MVWTAQTIAPDSEGAIDLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSI 298
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 299 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 358
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 359 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 389
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 277/391 (70%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V R+ GP A ILAIGTA P NC Q+ YPDF+F++TNSEHK ELKEKF+R+
Sbjct: 5 MVSVSEIRKAQRAEGP-ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 63
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
C++S I++RY YLTEEILKENPN+ Y APSLDAR AML EVP+LGKEAA+KAIKEWGQ
Sbjct: 64 CDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQAMLAMEVPRLGKEAAVKAIKEWGQ 123
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P SKITHLI + D+PGAD +L LLGL P V R+ ++ GC+ GG V+R AKD+AE
Sbjct: 124 PKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAE 183
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN GARVLVVC ++T + F P++ LD LVGQ + E+P+F+
Sbjct: 184 NNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEI-EKPIFE 242
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++ +Q P++E + GHL+E G + L +P I+ K I K L +A P+GISD+NS+
Sbjct: 243 MVWTAQTIAPDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGISDYNSI 302
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG ILDQVEQ L L EK+ A+R LSEYGN+ + VLFILD++RKKST+
Sbjct: 303 FWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGL 362
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGLE+GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 363 KTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 393
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/398 (55%), Positives = 288/398 (72%), Gaps = 5/398 (1%)
Query: 1 MGTVKSNG-DVHRSRGPS---AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEK 56
MG+ S+ +V R G + A ILAIGTATPPNC QADY D++FRVT SEH ++LKEK
Sbjct: 1 MGSYSSDDVEVIREAGRAQGLATILAIGTATPPNCVAQADYADYYFRVTKSEHMVDLKEK 60
Query: 57 FRRICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIK 116
F+RICE+++I+KRY LTE+ L+ENP M + APSL+AR +++ VP LGKEAA+KAI
Sbjct: 61 FKRICEKTAIKKRYLALTEDYLQENPTMCEFMAPSLNARQDLVVTGVPMLGKEAAVKAID 120
Query: 117 EWGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAK 176
EWG P SKITHLIF GVDMPGAD +L+ LLGL PSV R M+Y QG GG V+R AK
Sbjct: 121 EWGLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAK 180
Query: 177 DIAENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNER 236
D+AENN G+RVL+VC +IT + FH P E LD LV Q +++ ER
Sbjct: 181 DLAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAV-ER 239
Query: 237 PLFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISD 296
P+F+++S Q +P+TE + HL+E G + L +D+P+++ K I+ A+SP+GI+D
Sbjct: 240 PIFEIVSTDQTILPDTEKAMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGITD 299
Query: 297 WNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKST 356
WNS+F++VHPGG+ ILDQVE+ L L ++KL ASR+ LSEYGNL + VLFI+D+VRK+S
Sbjct: 300 WNSVFWMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFIIDEVRKRSM 359
Query: 357 EERKATTGEGLEYGVLFGFGPGITVETVVLRSIPIDSA 394
E K+TTGEGL+ GVLFGFGPG+TVETVVLRS+ + +A
Sbjct: 360 AEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTAA 397
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/391 (55%), Positives = 276/391 (70%), Gaps = 2/391 (0%)
Query: 1 MGTVKSNGDVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRI 60
M +V V R+ GP A +LAIGTA PPNC Q+ Y D++FRVTNSEH +LK+KF+RI
Sbjct: 2 MVSVSGIRKVQRAEGP-ATVLAIGTANPPNCVDQSTYADYYFRVTNSEHMTDLKKKFQRI 60
Query: 61 CERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQ 120
CER+ I+ R+ YLTEEILKENPNM YKAPSLDAR M+I EVP++GKEAA KAIKEWGQ
Sbjct: 61 CERTQIKNRHMYLTEEILKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQ 120
Query: 121 PVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAE 180
P+SKITHLIF GV +PG D L+ LLGL+PSV R M+Y QGC+ GG V+R AKD+AE
Sbjct: 121 PMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAE 180
Query: 181 NNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQ 240
NN ARVL+VC + T + F P+E +D LVGQ + E PLF+
Sbjct: 181 NNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEV-ENPLFE 239
Query: 241 VLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSL 300
++S Q VPN+ + G L+E+G + L+K +P II + I+ L+ A P+GISD+NS+
Sbjct: 240 IVSTDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSI 299
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
F+I HPGG+ ILDQVE+ + L EK+ A+R LS YGN+ + V FI+D +RKKS E
Sbjct: 300 FWIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKSLEAGL 359
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
TTGEGL++GVLFGFGPG+T+ETVVLRS+ I
Sbjct: 360 KTTGEGLDWGVLFGFGPGLTIETVVLRSMAI 390
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/381 (49%), Positives = 269/381 (70%), Gaps = 2/381 (0%)
Query: 11 HRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRY 70
R++GP A I+AIGTATPPN + Q+ +PDF+FRVTNS+ K ELK+KFRR+CE++ ++KRY
Sbjct: 11 QRAQGP-ATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRY 69
Query: 71 FYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIF 130
+LTEEILKE P + YK S D R +++EE+P+L KEAA KAIKEWG+P S+ITHL+F
Sbjct: 70 LHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVF 129
Query: 131 GAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVV 190
++ G+DMPGAD RL LLGL +VNRLMIYSQ C+MG A++R AKD+AENN GARVLVV
Sbjct: 130 CSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVV 189
Query: 191 CCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVP 250
C+ITVL F P E + L GQ + E+P++++ + Q TV
Sbjct: 190 ACEITVLSFRGPNEGDFEALAGQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQETVA 248
Query: 251 NTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKV 310
++ V GHL+ GW + LP II + + L A++P+G+ +WN +F++ HPG
Sbjct: 249 ESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGNWA 308
Query: 311 ILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYG 370
I+D +E L L +KL +R+ +EYGN+ + +V F++D++RK+S E ++TTG+GL++G
Sbjct: 309 IIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWG 368
Query: 371 VLFGFGPGITVETVVLRSIPI 391
VL GFGPG+++ETVVLRS+P+
Sbjct: 369 VLLGFGPGLSIETVVLRSMPL 389
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 189/381 (49%), Positives = 268/381 (70%), Gaps = 2/381 (0%)
Query: 11 HRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRY 70
R++GP A I+AIGTATPPN + Q+ +PDF+FRVTNS+ K ELK+KFRR+CE++ ++KRY
Sbjct: 11 QRAQGP-ATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRY 69
Query: 71 FYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIF 130
+LTEEILKE P + YK S D R +++EE+P+L KEAA KAIKEWG+P S+ITHL+F
Sbjct: 70 LHLTEEILKERPKLCSYKEASFDDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITHLVF 129
Query: 131 GAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVV 190
++ G+DMPGAD RL LLGL +VNRLMIYSQ C+MG A++R AKD+AENN GARVLVV
Sbjct: 130 CSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVV 189
Query: 191 CCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVP 250
C+ITVL F P E + L Q + E+P++++ + Q TV
Sbjct: 190 ACEITVLSFRGPNEGDFEALAFQAGFGDGAGAVVVGADPLEGI-EKPIYEIAAAMQETVA 248
Query: 251 NTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKV 310
++ V GHL+ GW + LP II + + L A++P+G+ +WN +F++ HPG
Sbjct: 249 ESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVFWVAHPGNWA 308
Query: 311 ILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYG 370
I+D +E L L +KL +R+ +EYGN+ + +V F++D++RK+S E ++TTG+GL++G
Sbjct: 309 IIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTTGDGLQWG 368
Query: 371 VLFGFGPGITVETVVLRSIPI 391
VL GFGPG+++ETVVLRS+P+
Sbjct: 369 VLLGFGPGLSIETVVLRSMPL 389
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/394 (51%), Positives = 264/394 (67%), Gaps = 5/394 (1%)
Query: 1 MGTVKSNG--DVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFR 58
MG V G + R+ G A ILAIGTA PPN Q+ YPDF+FR+T +EH ELK+KF+
Sbjct: 5 MGGVDFEGFRKLQRADG-FASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFK 63
Query: 59 RICERSSIRKRYFYLTEEILKENPNMSCY-KAPSLDARHAMLIEEVPKLGKEAALKAIKE 117
RICERS+I++RY YLTEEILK+NP++ + + PSLDAR AML EVP+L KEAA KAI+E
Sbjct: 64 RICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQE 123
Query: 118 WGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKD 177
WGQ S ITHLIF + D+PGAD + LLGL PSV R+ ++ GC+ GG V+R AKD
Sbjct: 124 WGQSKSGITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKD 183
Query: 178 IAENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERP 237
+AENN GARVLV+C + T + F P+E LD LVGQ + E+
Sbjct: 184 LAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKA 242
Query: 238 LFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDW 297
F+++ +Q VPN+E + G ++E+G + L +P +I I+ + +A S ISDW
Sbjct: 243 CFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDW 302
Query: 298 NSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTE 357
N LF++VHPGG+ ILD+VE L L KL +R+ +SEYGN+ + V FILD RK S +
Sbjct: 303 NKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQ 362
Query: 358 ERKATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
+TTGEGLE GVLFGFGPG+T+ETVVL+S+PI
Sbjct: 363 NGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVPI 396
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/394 (51%), Positives = 264/394 (67%), Gaps = 5/394 (1%)
Query: 1 MGTVKSNG--DVHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFR 58
MG V G + R+ G A ILAIGTA PPN Q+ YPDF+FR+T +EH ELK+KF+
Sbjct: 21 MGGVDFEGFRKLQRADG-FASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFK 79
Query: 59 RICERSSIRKRYFYLTEEILKENPNMSCY-KAPSLDARHAMLIEEVPKLGKEAALKAIKE 117
RICERS+I++RY YLTEEILK+NP++ + + PSLDAR AML EVP+L KEAA KAI+E
Sbjct: 80 RICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQE 139
Query: 118 WGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKD 177
WGQ S ITHLIF + D+PGAD + LLGL PSV R+ ++ GC+ GG V+R AKD
Sbjct: 140 WGQSKSGITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKD 199
Query: 178 IAENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERP 237
+AENN GARVLV+C + T + F P+E LD LVGQ + E+
Sbjct: 200 LAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQV-EKA 258
Query: 238 LFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDW 297
F+++ +Q VPN+E + G ++E+G + L +P +I I+ + +A S ISDW
Sbjct: 259 CFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDW 318
Query: 298 NSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTE 357
N LF++VHPGG+ ILD+VE L L KL +R+ +SEYGN+ + V FILD RK S +
Sbjct: 319 NKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQ 378
Query: 358 ERKATTGEGLEYGVLFGFGPGITVETVVLRSIPI 391
+TTGEGLE GVLFGFGPG+T+ETVVL+S+PI
Sbjct: 379 NGCSTTGEGLEMGVLFGFGPGLTIETVVLKSVPI 412
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 259/382 (67%), Gaps = 2/382 (0%)
Query: 10 VHRSRGPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKR 69
V + GP A ILAIGT+ P N F Q+ YPDFFF VTN K ELK+KF+RIC++S I+KR
Sbjct: 23 VIKPDGP-ATILAIGTSNPTNIFEQSTYPDFFFDVTNCNDKTELKKKFQRICDKSGIKKR 81
Query: 70 YFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLI 129
+F+LT+EIL++NP++ +K SLD R + + EVPKL KEAA+ AIK+WGQP SKITHL+
Sbjct: 82 HFHLTDEILRKNPSICKFKEASLDPRQDIAVLEVPKLAKEAAISAIKQWGQPKSKITHLV 141
Query: 130 FGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLV 189
F GVDMPGAD +L LLGL P+V R+M+Y QG Y G V+R AKD+AENN GARVLV
Sbjct: 142 FATTSGVDMPGADFQLAKLLGLRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLV 201
Query: 190 VCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTV 249
C ++T + F P+E LD LVG V E+PLF++ + +
Sbjct: 202 ACSEVTAVTFRAPSETHLDGLVGS-ALFGDGAAALIVGSDPVPQEEKPLFEIHWAGEAVL 260
Query: 250 PNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGK 309
P+++ + GHL+E G + L KD+P +I K IDK+LA+ + + +N +F+ VHPGG
Sbjct: 261 PDSDGAINGHLREAGLIFHLLKDVPGLISKNIDKVLAEPLEYVHFPSYNDMFWAVHPGGP 320
Query: 310 VILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEY 369
ILDQ+E LGL +K+ ASR L+ YGN+ + SVLF+LD +RK S E TTGEG E+
Sbjct: 321 AILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEW 380
Query: 370 GVLFGFGPGITVETVVLRSIPI 391
G + GFGPG+TVET++LRSI I
Sbjct: 381 GFVIGFGPGLTVETLLLRSINI 402
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/395 (47%), Positives = 255/395 (64%), Gaps = 8/395 (2%)
Query: 6 SNGDVHRSR------GPSAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRR 59
S+G RSR GP A +LA+G A P N F QA YPDFFF +TNS K LK KF+R
Sbjct: 18 SHGGSSRSRLIAQAVGP-ATVLAMGKAVPANVFEQATYPDFFFNITNSNDKPALKAKFQR 76
Query: 60 ICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWG 119
IC++S I+KR+FYL ++IL+ NP M Y SL+ R + + +VPKL KEA++ AIKEWG
Sbjct: 77 ICDKSGIKKRHFYLDQKILESNPAMCTYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWG 136
Query: 120 QPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIA 179
+P S+ITH++ GV+MPGA++ LLGL P+V R+M+Y QG + G V+R AKD+A
Sbjct: 137 RPKSEITHIVMATTSGVNMPGAELATAKLLGLRPNVRRVMMYQQGXFAGATVLRVAKDLA 196
Query: 180 ENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLF 239
ENN GARVL +C ++T + F P+E +D LVG + ERP++
Sbjct: 197 ENNAGARVLAICSEVTAVTFRAPSETHIDGLVGSALFGDGAAAVIVGSDPRPGI-ERPIY 255
Query: 240 QVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNS 299
++ +M +P ++ + GHL E G + L KD+P +I K I L D + +G S WN
Sbjct: 256 EMHWAGEMVLPESDGAIDGHLTEAGLVFHLLKDVPGLITKNIGGFLKDTKNLVGASSWNE 315
Query: 300 LFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEER 359
LF+ VHPGG ILDQVE L L K K ASR LS+YGN+ + SVLF+LD VR++S E
Sbjct: 316 LFWAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESN 375
Query: 360 KATTGEGLEYGVLFGFGPGITVETVVLRSIPIDSA 394
K+T GEG E+G L GFGPG+TVET++LR++P+ A
Sbjct: 376 KSTFGEGSEWGFLIGFGPGLTVETLLLRALPLQQA 410
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 249/378 (65%), Gaps = 4/378 (1%)
Query: 17 SAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEE 76
+A ++AIGTA PP+ F Q Y D +FR TNSEHK+ELK+KF IC+++ I KRYF EE
Sbjct: 29 TATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHICKKTMIGKRYFNYDEE 88
Query: 77 ILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGV 136
LK+ PN++ Y PSL+ R + + VP LG EAA+KAI+EWG+P S+ITHL+F GV
Sbjct: 89 FLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGV 148
Query: 137 DMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITV 196
DMP AD + LLGL +VN+ IY QG Y GG V+R+AKD+AENN GARVLVVC ++T+
Sbjct: 149 DMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGARVLVVCAELTI 208
Query: 197 LHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNV 256
+ P E LD +G + + E+P+F+++ Q +PNTE+ +
Sbjct: 209 MMLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEIVCTKQTVIPNTEDVI 267
Query: 257 VGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGIS---DWNSLFYIVHPGGKVILD 313
HL+E G + LSK P+ I ++ L D +GI+ DWNSLF+I HPGG+ ILD
Sbjct: 268 HLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWNSLFWIPHPGGRAILD 327
Query: 314 QVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLF 373
QVE L L EK A+R L +YGN+ + SV +ILD++R+KS + T GEGLE+GVL
Sbjct: 328 QVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEGLEWGVLL 387
Query: 374 GFGPGITVETVVLRSIPI 391
GFGPGITVET++L S+P+
Sbjct: 388 GFGPGITVETILLHSLPL 405
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/378 (48%), Positives = 249/378 (65%), Gaps = 4/378 (1%)
Query: 17 SAKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEE 76
+A ++AIGTA PP+ F Q Y D +FR TNSEHK+ELK+KF IC+++ I KRYF EE
Sbjct: 29 TATVMAIGTAHPPHIFPQDTYADVYFRATNSEHKVELKKKFDHICKKTMIGKRYFNYDEE 88
Query: 77 ILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGV 136
LK+ PN++ Y PSL+ R + + VP LG EAA+KAI+EWG+P S+ITHL+F GV
Sbjct: 89 FLKKYPNITSYDEPSLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGV 148
Query: 137 DMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITV 196
DMP AD + LLGL +VN+ IY QG Y GG V+R+AKD+AENN GARVLVVC ++T+
Sbjct: 149 DMPSADFQCAKLLGLHANVNKYCIYMQGXYAGGTVMRYAKDLAENNRGARVLVVCAELTI 208
Query: 197 LHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNV 256
+ P E LD +G + + E+P+F+++ Q +PNTE+ +
Sbjct: 209 MGLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGV-EKPMFEIVCTKQTVIPNTEDVI 267
Query: 257 VGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGIS---DWNSLFYIVHPGGKVILD 313
HL+E G + LSK P+ I ++ L D +GI+ DWNSLF+I HPGG+ ILD
Sbjct: 268 HLHLRETGMMFYLSKGSPMTISNNVEACLIDVFKSVGITPPEDWNSLFWIPHPGGRAILD 327
Query: 314 QVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLF 373
QVE L L EK A+R L +YGN+ + SV +ILD++R+KS + T GEGLE+GVL
Sbjct: 328 QVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYGEGLEWGVLL 387
Query: 374 GFGPGITVETVVLRSIPI 391
GFGPGITVET++L S+P+
Sbjct: 388 GFGPGITVETILLHSLPL 405
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/387 (42%), Positives = 231/387 (59%), Gaps = 10/387 (2%)
Query: 8 GDVHRSRGPS--AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSS 65
G++ RS+ A +LAIGTA PPNC Q + PDF+FRVTNS+H LK+KF+RIC+
Sbjct: 29 GEMRRSQRADGLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMG 88
Query: 66 IRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKI 125
+++RY + TEE+L +P APSLDAR + + VP+L EAA KAI EWG+P + I
Sbjct: 89 VQRRYLHHTEEMLSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADI 148
Query: 126 THLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGA 185
THL+ G +PG D RL+ LLGL PSV R M++ GC+ G A +R AKD+AEN+ GA
Sbjct: 149 THLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGA 208
Query: 186 RVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCS 245
RVLVV ++T+++F P E L+ Q ERPLF+++S +
Sbjct: 209 RVLVVAAELTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAA 266
Query: 246 QMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAM----SPIGISDWNSLF 301
Q +P +++ + E D L + +P +IG +++ L D G WN LF
Sbjct: 267 QTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLF 326
Query: 302 YIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKA 361
+ VHPG I+DQV+ LGL KL ASR LS+YGN+ +V+F LD++R++ E A
Sbjct: 327 WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AA 384
Query: 362 TTGEGLEYGVLFGFGPGITVETVVLRS 388
GE E GV+ FGPG+TV+ ++L +
Sbjct: 385 AAGEWPELGVMMAFGPGMTVDAMLLHA 411
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/375 (42%), Positives = 225/375 (60%), Gaps = 8/375 (2%)
Query: 18 AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEEI 77
A +LAIGTA PPNC Q + PDF+FRVTNS+H LK+KF+RIC+ +++RY + TEE+
Sbjct: 11 AAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEM 70
Query: 78 LKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVD 137
L +P APSLDAR + + VP+L EAA KAI EWG+P + ITHL+ G
Sbjct: 71 LSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAH 130
Query: 138 MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVL 197
+PG D RL+ LLGL PSV R M++ GC+ G A +R AKD+AEN+ GARVLVV ++T++
Sbjct: 131 VPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLM 190
Query: 198 HFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNVV 257
+F P E L+ Q ERPLF+++S +Q +P +++ +
Sbjct: 191 YFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDV--ERPLFEIVSAAQTIIPESDHALN 248
Query: 258 GHLKEMGWDYTLSKDLPVIIGKYIDKLLADAM----SPIGISDWNSLFYIVHPGGKVILD 313
E D L + +P +IG +++ L D G WN LF+ VHPG I+D
Sbjct: 249 MRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDLFWAVHPGSSTIMD 308
Query: 314 QVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLF 373
QV+ LGL KL ASR LS+YGN+ +V+F LD++R++ E A GE E GV+
Sbjct: 309 QVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKE--AAAAGEWPELGVMM 366
Query: 374 GFGPGITVETVVLRS 388
FGPG+TV+ ++L +
Sbjct: 367 AFGPGMTVDAMLLHA 381
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 180/377 (47%), Gaps = 26/377 (6%)
Query: 20 ILAIGTATPPNCFYQADYPDFFFRVTNS-EHKIELKEKFRRICERSSIRKRYFYLTEEIL 78
+L IG + P Q D ++N K E EK +RI E+S I+ R+ L +
Sbjct: 16 VLGIGISVPGEPISQQSLKD---SISNDFSDKAETNEKVKRIFEQSQIKTRH--LVRDYT 70
Query: 79 KENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVDM 138
K ++ ++ + + VP L ++A L+A+K+WG ITH++ G+ +
Sbjct: 71 KPENSIKFRHLETITDVNNQFKKVVPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIII 130
Query: 139 PGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLH 198
P + +L++LLGL V R+ + GC G + +R A +A+ +P R+LVVC ++ LH
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 199 FHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENNVVG 258
F D +V + E PL++V+ + PNTEN +V
Sbjct: 191 FSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE--ETPLYEVMCSINRSFPNTENAMVW 246
Query: 259 HLKEMGWDYTLSKDLPVIIGK----YIDKLL--ADAMSPIGISDWNSLFYIVHPGGKVIL 312
L++ GW+ L +P++IG ++D LL A + IS + F ++H GGK IL
Sbjct: 247 DLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEF-LIHTGGKSIL 305
Query: 313 DQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVL 372
+E +LG+ ++ + YGN+ + SV+F++D RK + Y +
Sbjct: 306 MNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKSLP---------TYSIS 356
Query: 373 FGFGPGITVETVVLRSI 389
FGPG+ E L+++
Sbjct: 357 LAFGPGLAFEGCFLKNV 373
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 19/368 (5%)
Query: 18 AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEEI 77
A I + T TP Q+D D RV +E+ R+ ++S I R + +
Sbjct: 33 AVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--DP 87
Query: 78 LKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVD 137
L ++ + ++ R + E L + + +A+ ++I L+ G
Sbjct: 88 LDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFI 147
Query: 138 MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVC---CDI 194
PG DV ++ LGL PS++R+++ GC + A + +P + LVVC C +
Sbjct: 148 APGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSV 207
Query: 195 TVLHFHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTEN 254
+ + + + L G L + S SQ+ + NTE+
Sbjct: 208 NAVFADDINDVVIHSLFGDGCAALVIGASQVQE----KLEPGKVVVRSSFSQL-LDNTED 262
Query: 255 NVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKVILDQ 314
+V + G LS++LP I + ++ + + G+ + + +HPGG I++Q
Sbjct: 263 GIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQ 322
Query: 315 VEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFG 374
++LG+ E S L+ +GN+ + S++F+L+ T ++A + + + GV F
Sbjct: 323 SVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLE------TMVQQAESAKAISTGVAFA 376
Query: 375 FGPGITVE 382
FGPG+TVE
Sbjct: 377 FGPGVTVE 384
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 163/367 (44%), Gaps = 17/367 (4%)
Query: 18 AKILAIGTATPPNCFYQADYPDFFFRVTNSEHKIELKEKFRRICERSSIRKRYFYLTEEI 77
A I + T TP Q+D D RV +E+ R+ ++S I R + +
Sbjct: 33 AVIEGLATGTPRRVVNQSDAAD---RVAELFLDPGQRERIPRVYQKSRITTRRMAV--DP 87
Query: 78 LKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVD 137
L ++ + ++ R + E L + + +A+ ++I L+ G
Sbjct: 88 LDAKFDVFRREPATIRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFI 147
Query: 138 MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVL 197
PG DV ++ LGL PS++R+++ GC + A + +P + LVVC ++ +
Sbjct: 148 APGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELFSV 207
Query: 198 H--FHEPTEARLDMLVGQXXXXXXXXXXXXXXXXXVSLNERPLFQVLSCSQMTVPNTENN 255
+ F + D+++ L + S SQ+ + NTE+
Sbjct: 208 NAVFADDIN---DVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQL-LDNTEDG 263
Query: 256 VVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPIGISDWNSLFYIVHPGGKVILDQV 315
+V + G LS++LP I + ++ + + G+ + + +HPGG I++Q
Sbjct: 264 IVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQS 323
Query: 316 EQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGF 375
++LG+ E S L+ +GN+ + S++F+L+ T ++A + + + GV F F
Sbjct: 324 VRSLGISAELAAQSWDVLARFGNMLSVSLIFVLE------TMVQQAESAKAISTGVAFAF 377
Query: 376 GPGITVE 382
GPG+TVE
Sbjct: 378 GPGVTVE 384
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 28/353 (7%)
Query: 50 KIELKEKFRRICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKE 109
K+ ++ I +RSSI L + K NP P++ H + + + L E
Sbjct: 67 KVLAINRYTGIDQRSSIGNPDHPL---VNKPNP-------PTVKELHEVFMSDGVPLAVE 116
Query: 110 AALKAIKEWGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGG 169
A+ KA+ E ++ITH++ PG D + LGL + +++++ GC G
Sbjct: 117 ASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGL 176
Query: 170 AVIRHAKDI-----AENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXX 224
A +R A ++ A P AR+LV+ +++ E+ +D L
Sbjct: 177 AALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSELES-IDALQETRIGIALFSDCA 234
Query: 225 XXXXXXVSLNERP----LFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKY 280
+ E P ++ +L +P++E+++ + MGW LS +PV+
Sbjct: 235 SAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKAS 294
Query: 281 IDKLLADAMS------PIGISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALS 334
+ AD +S P + +HPGG IL E +GL E + AS
Sbjct: 295 LQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYI 354
Query: 335 EYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGPGITVETVVLR 387
+GN + ++ +L+ +R+K + A G+ EY V FGPGI VE +L+
Sbjct: 355 NHGNSSSATIFSVLNRLREKDMDAL-APGGKVKEYVVGCAFGPGINVEMCMLK 406
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 151/353 (42%), Gaps = 28/353 (7%)
Query: 50 KIELKEKFRRICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKE 109
K+ ++ I +RSSI L K NP P++ H + + + L E
Sbjct: 38 KVLAINRYTGIDQRSSIGNPDHPLVN---KPNP-------PTVKELHEVFMSDGVPLAVE 87
Query: 110 AALKAIKEWGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGG 169
A+ KA+ E ++ITH++ PG D + LGL + +++++ G G
Sbjct: 88 ASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGXSGGL 147
Query: 170 AVIRHAKDI-----AENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXX 224
A +R A ++ A P AR+LV+ +++ E+ +D L
Sbjct: 148 AALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSELES-IDALQETRIGIALFSDCA 205
Query: 225 XXXXXXVSLNERP----LFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKY 280
+ E P ++ +L +P++E+++ G + MGW LS +PV+
Sbjct: 206 SAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGGDVDPMGWKVVLSPRVPVLAKAS 265
Query: 281 IDKLLADAMS------PIGISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALS 334
+ AD +S P + +HPGG IL E +GL E + AS
Sbjct: 266 LQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYI 325
Query: 335 EYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGPGITVETVVLR 387
+GN + ++ +L+ +R+K + A G+ EY V FGPGI VE +L+
Sbjct: 326 NHGNSSSATIFSVLNRLREKDMDAL-APGGKVKEYVVGCAFGPGINVEMCMLK 377
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 28/353 (7%)
Query: 50 KIELKEKFRRICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKE 109
K+ ++ I +RSSI L K NP P++ H + + + L E
Sbjct: 38 KVLAINRYTGIDQRSSIGNPDHPLVN---KPNP-------PTVKELHEVFMSDGVPLAVE 87
Query: 110 AALKAIKEWGQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGG 169
A+ KA+ E ++ITH++ PG D + LGL + +++++ G G
Sbjct: 88 ASRKAMAEARLVPAQITHMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGXSGGL 147
Query: 170 AVIRHAKDI-----AENNPGARVLVVCCDITVLHFHEPTEARLDMLVGQXXXXXXXXXXX 224
A +R A ++ A P AR+LV+ +++ E+ +D L
Sbjct: 148 AALRTAANLCLGHTARGKP-ARILVLALEVSTTMVRSELES-IDALQETRIGIALFSDCA 205
Query: 225 XXXXXXVSLNERP----LFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKY 280
+ E P ++ +L +P++E+++ + MGW LS +PV+
Sbjct: 206 SAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKAS 265
Query: 281 IDKLLADAMS------PIGISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALS 334
+ AD +S P + +HPGG IL E +GL E + AS
Sbjct: 266 LQPTYADLLSSLQDQLPSSYQKPADFDWAMHPGGATILSGAESAMGLTPEHMRASYDRYI 325
Query: 335 EYGNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGPGITVETVVLR 387
+GN + ++ +L+ +R+K + A G+ EY V FGPGI VE +L+
Sbjct: 326 NHGNSSSATIFSVLNRLREKDMDAL-APGGKVKEYVVGCAFGPGINVEMCMLK 377
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 135/330 (40%), Gaps = 35/330 (10%)
Query: 59 RICERSSIRKRYFYLTEEILKENPNMSCYKAPSLDARHAMLIEEVPKLGKEAALKAIKEW 118
R+ E + +R R+ P + P + R+ + E +A+ +
Sbjct: 48 RLIENTGVRTRHIV--------QPIEDTLEHPGFEDRNKVYEREAKSRVPAVIQRALDDA 99
Query: 119 GQPVSKITHLIFGAVYGVDMPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDI 178
+ I +I+ + G MP L+N +G + + ++ I GC GGA I A D
Sbjct: 100 ELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDF 159
Query: 179 AENNPGARVLVVCCDITVLHFHEPTEARLDMLV--GQXXXXXXXXXXXXXXXXXVSLNER 236
P A L+V C+ L + +PT+ + L+ G V L
Sbjct: 160 CTAYPEANALIVACEFCSLCY-QPTDLGVGSLLCNGLFGDGIAAAVVRGRGGTGVRLERN 218
Query: 237 PLFQVLSCSQMTVPNTENNVVGHLKEMGWDYTLSKDLPVIIGKYIDKLLADAMSPI-GIS 295
+P TE+ ++ +K G+ + L K +P + + LA A+ + G
Sbjct: 219 --------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATM-----EPLAPALKELAGEH 265
Query: 296 DWNSL---FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVR 352
W++ FYIVH GG ILD + L + SR L+EYGN+ + VL D
Sbjct: 266 GWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVL----DAL 321
Query: 353 KKSTEERKATTGEGLEYGVLFGFGPGITVE 382
++ +E G G+L GFGPGIT E
Sbjct: 322 RRLFDEGGVEEG---ARGLLAGFGPGITAE 348
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 124 KITHLIFGAVYGVDMPGAD-VRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENN 182
KI +I VD A V + +LLG++P + CY A + +AK E +
Sbjct: 70 KIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEAXCYSATAALNYAKLHVEKH 129
Query: 183 PGARVLVVCCDITVLHFHEPTEA 205
P RVLV+ DI P E+
Sbjct: 130 PDTRVLVLASDIAKYGIGTPGES 152
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 124 KITHLIFGAVYGVDMPGAD-VRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENN 182
KI +I VD A V + +LLG++P R + CY A + +AK E +
Sbjct: 104 KIDMVILATESSVDQSKAGAVYVHSLLGIQP-FARSFEMKEACYSATAALNYAKLHVEKH 162
Query: 183 PGARVLVVCCDITVLHFHEPTEA 205
P RVLV+ DI P E+
Sbjct: 163 PDTRVLVLASDIAKYGIGTPGES 185
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 113/297 (38%), Gaps = 22/297 (7%)
Query: 91 SLDARHAMLIEEVPKLGKEAALKAIKEWGQPVSKITHLIFGAVYGVDMPGADVRLMNLLG 150
++ R A E V G+ AA A++ G V+ + LI +PG DV L N L
Sbjct: 125 TVQERTAPAWEAVQAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALANRLP 184
Query: 151 LEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLHFHEPTEARLDML 210
L L C G + A D+ +P VLVV + + +P + L+ L
Sbjct: 185 LRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY-QPADDTLESL 243
Query: 211 VGQXXXXXXXXXXXXXXXXXVSLNERP--LFQVLSCSQMTVPNTENNVVGHLKEMGWDYT 268
+ V+ RP + ++ + T+P T + + G +
Sbjct: 244 I------VRLLFADTAVAAVVTGRPRPESVLRLDAAWHHTLPGTRDLHRLETRADGTHFV 297
Query: 269 LSKDLPVIIGKYIDKLLA--DAMSPIGISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKL 326
+ + P + + + + S W+ + HPGG +L+ +EQ + +
Sbjct: 298 MDRRGPRAVQETVTAMWEWLRVRYEDDPSSWHPDVLLAHPGGTRVLEYMEQTMP-DEWPS 356
Query: 327 GASRYALSEY--GNLGAPSVLFILDDVRKKSTEERKATTGEGLEYGVLFGFGPGITV 381
G Y+ Y GN G +V IL R+ +K TG VL+ PG+T
Sbjct: 357 GLLSYSRDSYTSGNRGGAAVFDIL---RRAHDAGQK--TG---SRAVLYAAAPGLTA 405
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 144 RLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLHFH--- 200
++ NLLG++P + CY I+ AKD P +VLV+ D +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 201 EPTE 204
EPT+
Sbjct: 150 EPTQ 153
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 144 RLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLHFH--- 200
++ NLLG++P + CY I+ AKD P +VLV+ D +
Sbjct: 90 QIHNLLGIQPFARCFEMKEAXCYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 201 EPTE 204
EPT+
Sbjct: 150 EPTQ 153
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 31 CFYQADYP-DFFFRVTNSEHKIELKEKFRRICERSSI 66
CF Q DY D+F R TN +HK +KE + ++ ++ I
Sbjct: 87 CFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 144 RLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLHFH--- 200
++ NLLG++P R + CY I+ AKD P +VLV+ D +
Sbjct: 91 QIHNLLGIQPFA-RCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 201 EPTE 204
EPT+
Sbjct: 150 EPTQ 153
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 31 CFYQADYP-DFFFRVTNSEHKIELKEKFRRICERSSI 66
CF Q DY D+F R TN +HK +KE + ++ ++ I
Sbjct: 87 CFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 125 ITHLIFGAVYGVD-MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNP 183
I +I G +D A V L L+G++P I +GCY A ++ AK+ +P
Sbjct: 71 IDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEI-KEGCYGATAGLQLAKNHVALHP 129
Query: 184 GARVLVVCCDITVLHFH---EPTE 204
+VLVV DI + EPT+
Sbjct: 130 DKKVLVVAADIAKYGLNSGGEPTQ 153
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 301 FYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRKKSTEERK 360
+I H I++ + LG+ K+K+ S +++YGN A S+ +D K +
Sbjct: 234 LFIPHQANIRIMESARERLGISKDKMSVS---VNKYGNTSAASIPLSIDQELKNGKLKDD 290
Query: 361 ATTGEGLEYGVLFGFGPGITVETVVLR 387
T VL GFG G+T + ++
Sbjct: 291 DTI-------VLVGFGGGLTWGAMTIK 310
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 125 ITHLIFGAVYGVD-MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNP 183
I +I G +D A V L L+G++P I + CY A ++ AK+ +P
Sbjct: 76 IDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEI-KEACYGATAGLQLAKNHVALHP 134
Query: 184 GARVLVVCCDITVLHFH---EPTE 204
+VLVV DI + EPT+
Sbjct: 135 DKKVLVVAADIAKYGLNSGGEPTQ 158
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 125 ITHLIFGAVYGVD-MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNP 183
I +I G +D A V L L+G++P I + CY A ++ AK+ +P
Sbjct: 71 IDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEI-KEACYGATAGLQLAKNHVALHP 129
Query: 184 GARVLVVCCDITVLHFH---EPTE 204
+VLVV DI + EPT+
Sbjct: 130 DKKVLVVAADIAKYGLNSGGEPTQ 153
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 32 FYQADYP-DFFFRVTNSEHKIELKEKFRRICERSSI 66
F Q DY D+F R TN +HK +KE + ++ ++ I
Sbjct: 88 FEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDI 123
>pdb|3IL6|A Chain A, Structure Of E. Faecalis Fabh In Complex With 2-({4-[(3r,
5s)-3,5-Dimethylpiperidin-1-Yl]-3-Phenoxybenzoyl}amino)
Benzoic Acid
Length = 321
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 294 ISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRK 353
++D + ++H I+D++ + + +EK + + +YGN A S+ +LD+ +
Sbjct: 235 VTDETVDYLLLHQANVRIIDKIARKTKISREKFLTN---MDKYGNTSAASIPILLDEAVE 291
Query: 354 KST-----EERKATTGEGLEYGVLFGFGPGITVETVVL 386
T ++R VL GFG G+T +++L
Sbjct: 292 NGTLILGSQQRV----------VLTGFGGGLTWGSLLL 319
>pdb|3IL5|A Chain A, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|B Chain B, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|C Chain C, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
pdb|3IL5|D Chain D, Structure Of E. Faecalis Fabh In Complex With
2-({4-Bromo-3-
[(Diethylamino)sulfonyl]benzoyl}amino)benzoic Acid
Length = 343
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 294 ISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRK 353
++D + ++H I+D++ + + +EK + + +YGN A S+ +LD+ +
Sbjct: 255 VTDETVDYLLLHQANVRIIDKIARKTKISREKFLTN---MDKYGNTSAASIPILLDEAVE 311
Query: 354 KST-----EERKATTGEGLEYGVLFGFGPGITVETVVL 386
T ++R VL GFG G+T +++L
Sbjct: 312 NGTLILGSQQRV----------VLTGFGGGLTWGSLLL 339
>pdb|3IL4|A Chain A, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|B Chain B, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|C Chain C, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
pdb|3IL4|D Chain D, Structure Of E. Faecalis Fabh In Complex With Acetyl Coa
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 294 ISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLFILDDVRK 353
++D + ++H I+D++ + + +EK + + +YGN A S+ +LD+ +
Sbjct: 234 VTDETVDYLLLHQASVRIIDKIARKTKISREKFLTN---MDKYGNTSAASIPILLDEAVE 290
Query: 354 KST-----EERKATTGEGLEYGVLFGFGPGITVETVVL 386
T ++R VL GFG G+T +++L
Sbjct: 291 NGTLILGSQQRV----------VLTGFGGGLTWGSLLL 318
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 144 RLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCDITVLHFH--- 200
++ NLLG++P R + Y I+ AKD P +VLV+ D +
Sbjct: 91 QIHNLLGIQPFA-RCFEMKEAXYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGG 149
Query: 201 EPTE 204
EPT+
Sbjct: 150 EPTQ 153
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 144 RLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNPGARVLVVCCD 193
++ NLLG++P R + Y I+ AKD P +VLV+ D
Sbjct: 91 QIHNLLGIQPFA-RCFEMKEAXYAATPAIQLAKDYLATRPNEKVLVIATD 139
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 125 ITHLIFGAVYGVD-MPGADVRLMNLLGLEPSVNRLMIYSQGCYMGGAVIRHAKDIAENNP 183
I +I G +D A V L L+G++P I Y A ++ AK+ +P
Sbjct: 71 IDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACXYGATAGLQLAKNHVALHP 130
Query: 184 GARVLVVCCDITVLHFH---EPTE 204
+VLVV DI + EPT+
Sbjct: 131 DKKVLVVAADIAKYGLNSGGEPTQ 154
>pdb|3RNQ|A Chain A, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 117
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 164 GCYMGGAVIRHAKDIAENNPGARVLV 189
G Y+ GA+ RH K E +PGA ++V
Sbjct: 86 GIYLCGAISRHPKAKIEESPGAELVV 111
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 287 DAMSPIGISDWNSLFYIVHPGGKVILDQVEQNLGLGKEKLGASRYALSEYGNLGAPSVLF 346
+A+ G++ + ++ H I+D + LGL E++ + + YGN S+
Sbjct: 228 EAIEKAGLTPEDIRLFVPHQANLRIIDAARERLGLPWERVAVN---VDRYGNTSTASIPL 284
Query: 347 ILDDVRKKSTEERKATTGEGLEYGVLFGFGPGITVETVVL 386
L K++ + + G+ + +L FG G+T VL
Sbjct: 285 AL----KEAVDAGRIREGDHV---LLVSFGAGLTWAAAVL 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,742,178
Number of Sequences: 62578
Number of extensions: 486533
Number of successful extensions: 1105
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 58
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)