BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016095
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Query: 27 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAVGEKEWFFYVP 86
PGFRF+PT+EEL+ YL RK G F+++LI +DLY++DPW LP A GEKEW+F+ P
Sbjct: 19 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 78
Query: 87 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 146
RDRKY NG RPNRV SGYWKATG D++I +E R +G+KK LVFY GKAPKG +T+WIM
Sbjct: 79 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIM 137
Query: 147 NEYRL--PQHETERYQKAEISLCRVHKR 172
+EYRL P + + LCR++K+
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVLCRIYKK 165
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
Query: 27 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAVGEKEWFFYVP 86
PGFRF+PT+EEL+ YL RK G F+++LI +DLY++DPW LP A GEKEW+F+ P
Sbjct: 22 PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSP 81
Query: 87 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 146
RDRKY NG RPNRV SGYWKATG D++I +E R +G+KK LVFY GKAPKG +T+WIM
Sbjct: 82 RDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQR-VGIKKALVFYIGKAPKGTKTNWIM 140
Query: 147 NEYRL--PQHETERYQKAEISLCRVHKR 172
+EYRL P + + LCR++K+
Sbjct: 141 HEYRLIEPSRRNGSTKLDDWVLCRIYKK 168
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Query: 27 PGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAVGEKEWFFYVP 86
PGFRFHPT++ELVE YL RK G+R V +I +DLY++DPW+LP A G +EW+F+ P
Sbjct: 17 PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTP 76
Query: 87 RDRKYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIM 146
RDRKY NG RPNR +GYWKATGAD+ + + R++G+KK LVFY+GKAP+G++T WIM
Sbjct: 77 RDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRGVKTDWIM 135
Query: 147 NEYRL 151
+EYRL
Sbjct: 136 HEYRL 140
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 353 HLQELQPQSLNLLATPLPAAFSDRLW 378
HLQ +Q S ATPL AA ++ W
Sbjct: 261 HLQTVQQNSFYTCATPLQAALAEAFW 286
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 353 HLQELQPQSLNLLATPLPAAFSDRLW 378
HLQ +Q S ATPL AA ++ W
Sbjct: 261 HLQTVQQNSFYTCATPLQAALAEAFW 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,424,271
Number of Sequences: 62578
Number of extensions: 442728
Number of successful extensions: 926
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 5
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)