Query 016095
Match_columns 395
No_of_seqs 161 out of 951
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 1.1E-53 3.8E-58 388.8 15.5 164 10-174 2-167 (171)
2 3ulx_A Stress-induced transcri 100.0 1.1E-53 3.7E-58 389.9 15.3 154 20-174 10-170 (174)
3 2c4b_A Barnase mcoeeti fusion; 22.5 55 0.0019 28.7 3.0 33 34-69 4-38 (143)
4 1ldd_A APC2WHB, anaphase promo 16.6 70 0.0024 24.9 2.1 27 25-52 36-63 (74)
5 1cmb_A Met APO-repressor; DNA- 14.7 1.8E+02 0.006 23.8 4.1 39 32-74 50-88 (104)
6 3cpr_A Dihydrodipicolinate syn 8.7 96 0.0033 29.4 0.8 18 25-43 118-135 (304)
7 3nr5_A MAF1, repressor of RNA 8.7 85 0.0029 28.0 0.4 12 57-68 119-130 (164)
8 3fkr_A L-2-keto-3-deoxyarabona 8.2 1.4E+02 0.0048 28.4 1.7 19 24-43 109-130 (309)
9 4dox_A Coat protein; all helix 7.8 1.1E+02 0.0039 28.5 0.9 20 28-47 158-177 (226)
10 2lau_A THAP domain-containing 7.7 1.9E+02 0.0066 21.7 2.0 20 27-46 20-41 (81)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.1e-53 Score=388.79 Aligned_cols=164 Identities=51% Similarity=0.957 Sum_probs=135.5
Q ss_pred cCCCCCCCCCCCCCCCCCCceEcCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCChhhhhccCceeEEEEeeccc
Q 016095 10 SNNNDSKNDDHEHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAVGEKEWFFYVPRDR 89 (395)
Q Consensus 10 ~~~~~~~~~~~~~~~LPPGfRF~PTDEELI~~YLrrKi~G~plp~~~I~evDVY~~ePwdLP~~~~~ge~eWYFFtpr~r 89 (395)
++|+..+.+......|||||||+|||||||.+||++|+.|.+++..+|+++|||.+|||+||+....++++||||+++++
T Consensus 2 ~~m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~ 81 (171)
T 1ut7_A 2 SHMGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDR 81 (171)
T ss_dssp CCCCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC
T ss_pred CccccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccc
Confidence 34444444455667899999999999999999999999999999999999999999999999998888999999999999
Q ss_pred cCCCCCCCccccccceEeecCCCceEEcCCCceEEEEEEEEEeeCCCCCCCCcCcEEEEEecCCCCcc--cccCCCeEEE
Q 016095 90 KYRNGDRPNRVTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETE--RYQKAEISLC 167 (395)
Q Consensus 90 K~~nG~R~~R~tggG~WK~tG~~k~I~~~~G~vIG~KktL~Fy~Gk~pkg~kT~WvMhEY~L~~~~~~--~~~~~d~VLC 167 (395)
|+++|.|++|++++||||++|+++.|... +.+||+||+|+||.|+++++.+|+|+||||+|...... ....++||||
T Consensus 82 k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlC 160 (171)
T 1ut7_A 82 KYPNGSRPNRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLC 160 (171)
T ss_dssp -------CCEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEE
T ss_pred ccCCCCcccccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEE
Confidence 99999999999999999999999999974 68999999999999999999999999999999875421 1245799999
Q ss_pred EEEecCC
Q 016095 168 RVHKRPG 174 (395)
Q Consensus 168 RIykk~g 174 (395)
|||++.+
T Consensus 161 rv~~k~~ 167 (171)
T 1ut7_A 161 RIYKKQS 167 (171)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9999865
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-53 Score=389.86 Aligned_cols=154 Identities=51% Similarity=1.040 Sum_probs=135.4
Q ss_pred CCCCCCCCCceEcCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCChhhhhccCceeEEEEeeccccCCCCCCCcc
Q 016095 20 HEHDVVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAVGEKEWFFYVPRDRKYRNGDRPNR 99 (395)
Q Consensus 20 ~~~~~LPPGfRF~PTDEELI~~YLrrKi~G~plp~~~I~evDVY~~ePwdLP~~~~~ge~eWYFFtpr~rK~~nG~R~~R 99 (395)
.....|||||||+|||||||.+||++|+.|.+++..+|.++|||.+|||+||+....|+++||||+++++|+++|.|++|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 34457999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccccceEeecCCCceEEcCCCceEEEEEEEEEeeCCCCCCCCcCcEEEEEecCCCCccc-------ccCCCeEEEEEEec
Q 016095 100 VTTSGYWKATGADRMIKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETER-------YQKAEISLCRVHKR 172 (395)
Q Consensus 100 ~tggG~WK~tG~~k~I~~~~G~vIG~KktL~Fy~Gk~pkg~kT~WvMhEY~L~~~~~~~-------~~~~d~VLCRIykk 172 (395)
++++||||++|+++.|... |.+||+||+|+||.|+++++.+|+|+||||+|....... ...++|||||||+|
T Consensus 90 ~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred ecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 9999999999999999874 789999999999999999999999999999998754321 24578999999998
Q ss_pred CC
Q 016095 173 PG 174 (395)
Q Consensus 173 ~g 174 (395)
++
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=22.48 E-value=55 Score=28.72 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCcccee--eccCCCCCCCC
Q 016095 34 TEEELVEFYLRRKVEGKRFNVELIT--FLDLYRYDPWE 69 (395)
Q Consensus 34 TDEELI~~YLrrKi~G~plp~~~I~--evDVY~~ePwd 69 (395)
|+.+-|..||+. ...||..+|. +++--+++|.+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 456667788887 3456777765 34556788854
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=16.56 E-value=70 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCCCceEcC-ChHHHHHHHHHHHHcCCCC
Q 016095 25 VMPGFRFHP-TEEELVEFYLRRKVEGKRF 52 (395)
Q Consensus 25 LPPGfRF~P-TDEELI~~YLrrKi~G~pl 52 (395)
.|.|+.|.. |++||-. ||.+++....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 366999998 8888888 59999987654
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.68 E-value=1.8e+02 Score=23.79 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccceeeccCCCCCCCChhhhh
Q 016095 32 HPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALA 74 (395)
Q Consensus 32 ~PTDEELI~~YLrrKi~G~plp~~~I~evDVY~~ePwdLP~~~ 74 (395)
|-|..||++.-...-..|+|||.+ -|+-+..|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568889999888888999999864 588889999998754
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=8.70 E-value=96 Score=29.42 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=14.4
Q ss_pred CCCCceEcCChHHHHHHHH
Q 016095 25 VMPGFRFHPTEEELVEFYL 43 (395)
Q Consensus 25 LPPGfRF~PTDEELI~~YL 43 (395)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 668999999999873
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=8.66 E-value=85 Score=28.01 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=10.5
Q ss_pred eeeccCCCCCCC
Q 016095 57 ITFLDLYRYDPW 68 (395)
Q Consensus 57 I~evDVY~~ePw 68 (395)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 567899999998
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=8.15 E-value=1.4e+02 Score=28.39 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=14.6
Q ss_pred CCCCCce---EcCChHHHHHHHH
Q 016095 24 VVMPGFR---FHPTEEELVEFYL 43 (395)
Q Consensus 24 ~LPPGfR---F~PTDEELI~~YL 43 (395)
++|| |. |.|++++|+.||-
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHH
Confidence 3466 55 8999999999863
No 9
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=7.77 E-value=1.1e+02 Score=28.53 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=15.1
Q ss_pred CceEcCChHHHHHHHHHHHH
Q 016095 28 GFRFHPTEEELVEFYLRRKV 47 (395)
Q Consensus 28 GfRF~PTDEELI~~YLrrKi 47 (395)
|..+.||++|+|.+-..+++
T Consensus 158 GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp CCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 89999999999998554444
No 10
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=7.74 E-value=1.9e+02 Score=21.67 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=15.0
Q ss_pred CCceEc--CChHHHHHHHHHHH
Q 016095 27 PGFRFH--PTEEELVEFYLRRK 46 (395)
Q Consensus 27 PGfRF~--PTDEELI~~YLrrK 46 (395)
+|+.|+ |.|+|+...+|..-
T Consensus 20 ~~v~fh~FPkd~~~~~~Wl~~~ 41 (81)
T 2lau_A 20 KALHFYTFPKDAELRRLWLKNV 41 (81)
T ss_dssp CCSCEECCCSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHh
Confidence 367765 99999988877643
Done!