BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016097
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
Pyrophosphate Synthase
Length = 348
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/344 (73%), Positives = 290/344 (84%)
Query: 52 QEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATA 111
+E+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATA
Sbjct: 5 EEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATA 64
Query: 112 LNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 171
L+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNV 124
Query: 172 VMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 231
VMGNK++VLAGDFLLSRAC ALA+LKN GETM++T+S++QR SMD
Sbjct: 125 VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMD 184
Query: 232 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 291
YYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSA
Sbjct: 185 YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244
Query: 292 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 351
SLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+ R
Sbjct: 245 SLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRAR 304
Query: 352 ELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395
EL I SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 305 ELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
Prenyl Pyrophosphate Synthase (Surface Polar Residue
Mutant)
Length = 348
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/344 (72%), Positives = 287/344 (83%)
Query: 52 QEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATA 111
+E+LDPFSLVADELS+L+ +LR MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATA
Sbjct: 5 EEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATA 64
Query: 112 LNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 171
L+VRVPE L D + +ELR RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN
Sbjct: 65 LDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNV 124
Query: 172 VMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 231
VMGNK++VLAGDFLLSRAC ALA+LKN GETM++T+S+ R SMD
Sbjct: 125 VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMD 184
Query: 232 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 291
YYMQKTYYKTASLISNSCKA+A+L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSA
Sbjct: 185 YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSA 244
Query: 292 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTR 351
SLGKGSLSDIRHG+ITAPILFAMEEFPQLR VV+Q D NVDIALEYLGKS+GIQ+ R
Sbjct: 245 SLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVAADPRNVDIALEYLGKSKGIQRAR 304
Query: 352 ELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395
EL I SLPE ++EDV +SRRAL+DLTHRVITRNK
Sbjct: 305 ELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348
>pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
pdb|3MZV|B Chain B, Crystal Structure Of A Decaprenyl Diphosphate Synthase
From Rhodobacter Capsulatus
Length = 341
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 159/339 (46%), Gaps = 31/339 (9%)
Query: 61 VADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEP 119
+A++++ + +R + +E P++ + + G GKR RP +L +A A V P
Sbjct: 18 LAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRP--MLTLAAARLVGYGGP 73
Query: 120 LHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAV 179
H +A E IH A+LLHDDV+D++ RRG + N + NK +V
Sbjct: 74 FH---------------VHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSV 118
Query: 180 LAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYY 239
L GD+L +R+ + N GE +Q+T + + + D Y++
Sbjct: 119 LVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRG 178
Query: 240 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 299
KTA+L S + + ++ G + FDYG LG+A+Q++DD+LD+ G SA +GK +
Sbjct: 179 KTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGD 238
Query: 300 DIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELX 354
D R +T P++ A+ E + V+E+G + +++ A+ + K ++ TR
Sbjct: 239 DFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAA 298
Query: 355 XXXXXXXXXXIDSLPENNDEDVTKSRRALLDLTHRVITR 393
+ LP++ R+ L DL V+ R
Sbjct: 299 IGWTDTARKALAKLPDH------PLRQMLDDLADYVVER 331
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 123/247 (49%), Gaps = 19/247 (7%)
Query: 68 LAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 127
+ KRL + ++ + AA + G GKR RP +LL L+D +D
Sbjct: 17 VEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDD 65
Query: 128 LATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 187
L +RT A E++H+ASL+HDD +D++D RRG S++ A+ G FLL+
Sbjct: 66 L---IRT-----AVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLA 117
Query: 188 RACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 247
RA +A++ N GE QM + S Y+++ KTA LI
Sbjct: 118 RALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEA 177
Query: 248 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 307
SC AL + + +G +G++YQ+IDD+LD+T A+LGK SDIR+G IT
Sbjct: 178 SCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHIT 237
Query: 308 APILFAM 314
P++ A+
Sbjct: 238 YPLMAAI 244
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 113/238 (47%), Gaps = 22/238 (9%)
Query: 77 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 136
VA +P LA E+ G GKR RP L+ +A A LA
Sbjct: 50 VAIIPALA---EHLIAAG--GKRLRP--LMTVAAA---------------RLAGADNDHF 87
Query: 137 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 196
Q +A E IH A+LLHDDV+D + RRG + + + G +VL GDFL +RA +
Sbjct: 88 QKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVET 147
Query: 197 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA 256
+ GE +Q+ S D S Y++ KTA L + + +A A+ A
Sbjct: 148 NSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSA 207
Query: 257 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 314
G + DYG NLGLA+QL DD LD+ G + +LGK + D R G T P+L A+
Sbjct: 208 GVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAI 265
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 33/299 (11%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GKRFRP + L+A+ + PL + V A A + E+ H+A+L HDDV
Sbjct: 74 GKRFRP-MFALLASEFGEK---PLSENVIKA------------AVVVEITHLATLYHDDV 117
Query: 157 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGE 216
+D+A RRG+ S N N +A+LAGD LL+ A ++ L GE
Sbjct: 118 MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLGT------DTVAHFAETFGE 171
Query: 217 --TMQMTTSSDQRCS--MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 272
T QM + R + +++Y KT LI+++ A+ AG E ++G
Sbjct: 172 LVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAA 231
Query: 273 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-EEFP---QLRTVVEQGF 328
+G+ +Q++DD++D + GK +D+R G+ T P+L+A+ E+ P +LR ++
Sbjct: 232 VGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPL 291
Query: 329 EDSSNVDIALEYLGKSRGIQKTRELXXXXXXXXXXXIDSLPENNDEDVTKSRRALLDLT 387
ED V+ LE L +S G Q + +D LP D V ++ R L T
Sbjct: 292 EDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLP---DSTVKEALRNLATFT 347
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 95/210 (45%), Gaps = 17/210 (8%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 55 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 98
Query: 157 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXXG 215
+DD+ TRRG+ ++ G + A+ AGDF+ + L S + G
Sbjct: 99 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQG 158
Query: 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 275
E QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 159 ELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGC 218
Query: 276 AYQLIDDVLDFTGTSASLGKGSLSDIRHGI 305
AYQ++DD+LD+ G K L D+R G+
Sbjct: 219 AYQMLDDILDYAGDPKRTQKPVLEDLRSGV 248
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 95/210 (45%), Gaps = 17/210 (8%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GK RP L +T N P L G A E++HV +L+HDDV
Sbjct: 48 GKLLRPGYFYLFSTFGNAATPAQLQAG----------------AAAIEILHVGTLIHDDV 91
Query: 157 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC-VALASLKNXXXXXXXXXXXXXXXXG 215
+DD+ TRRG+ ++ G + A+ AGDF+ + L S + G
Sbjct: 92 IDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQG 151
Query: 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 275
E QM + + ++D Y+ + KTA L + SC A LAG V D G +G
Sbjct: 152 ELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGC 211
Query: 276 AYQLIDDVLDFTGTSASLGKGSLSDIRHGI 305
AYQ++DD+LD+ G K L D+R G+
Sbjct: 212 AYQMLDDILDYAGDPKRTQKPVLEDLRSGV 241
>pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
pdb|1VG4|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132aL128A
MUTANT
Length = 299
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKARR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F132a Mutant
Length = 299
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
pdb|1V4E|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
Length = 299
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
pdb|1WKZ|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima K41a Mutant
Length = 299
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima F52a Mutant
Length = 299
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R44a Mutant
Length = 299
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga
Maritima Octaprenyl Pyrophosphate Synthase
Length = 299
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAEHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123A MUTANT
Length = 299
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima
F132aL128AI123AD62A MUTANT
Length = 299
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEAGNNKARR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AALNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
pdb|1V4J|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima V73y Mutant
Length = 299
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E+ H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELYHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76y Mutant
Length = 299
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ SLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYSLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
pdb|3TC1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Helicobacter Pylori
Length = 315
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Query: 142 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXX 201
I EMI ASLLHDDV+D A RR + S+N + GN AV+ GD S+A L+ +
Sbjct: 65 IVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM-GELI 123
Query: 202 XXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 261
GE + Y + KTA I S K++A+L + A+
Sbjct: 124 AQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAK 183
Query: 262 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 319
+ D+G N G+A+Q+IDD+LD T + +LGK + SD + G T P L E+ Q
Sbjct: 184 IYA---DFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQ 238
>pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima S77f Mutant
Length = 299
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+A LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLAFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R90a Mutant
Length = 299
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A RG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFARGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
pdb|1WL3|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima R91a Mutant
Length = 299
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ASLLHDDV+D A R G ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLASLLHDDVIDGARFRAGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima A76yS77F
MUTANT
Length = 299
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 5/183 (2%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX 203
E++H+ LLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 71 ELVHLYFLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRR 130
Query: 204 XXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA 263
E ++ S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 131 AFLNVIGKMSEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED- 188
Query: 264 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTV 323
++ G +G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R +
Sbjct: 189 --LYNLGVTIGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQM 245
Query: 324 VEQ 326
E
Sbjct: 246 FEN 248
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 25/253 (9%)
Query: 58 FSLVADELSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV 116
F+ + ++ ++ +++ ++ + P+ L AA ++ G GKR RP V+L A+
Sbjct: 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVG--- 62
Query: 117 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 176
+PL + A+A EL IH SL+HDD++D +TRRG +++ + G
Sbjct: 63 GDPLR-AIYPAVAIEL-------------IHNYSLVHDDIMDMDETRRGKPTVHRIWGVN 108
Query: 177 LAVLAGDFLLSRACVALASL-----KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMD 231
+A+LAGD L S+A A+A K G+ + +++
Sbjct: 109 MAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIE 168
Query: 232 YYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 291
YM+ KT +L S K ++ E +G+N+G+A+Q+ DDVLD
Sbjct: 169 EYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEK 228
Query: 292 SLGKGSLSDIRHG 304
LGK SDIR G
Sbjct: 229 KLGKPVGSDIRKG 241
>pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
pdb|3RMG|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Bacteroides Thetaiotaomicron
Length = 334
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GK RP ++LL+A P LH V E++H ASL+HDDV
Sbjct: 47 GKMMRPILVLLVARLYGAVTPATLHAAVS-----------------LELLHTASLVHDDV 89
Query: 157 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGE 216
+D++ RRG S+N + NK++VLAGD+LL+ + V N GE
Sbjct: 90 VDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGE 149
Query: 217 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 276
+Q++ S+ S + Y KTA+L + +A AL E A G+ +G+
Sbjct: 150 LLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGIC 209
Query: 277 YQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 314
+Q+ DD+ D+ S +GK + +D+ G +T P L+A+
Sbjct: 210 FQIKDDIFDYFD-SKKIGKPTGNDMLEGKLTLPALYAL 246
>pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
pdb|1WL1|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
From Hyperthermophilic Thermotoga Maritima H74a Mutant
Length = 299
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 153 HDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXX 212
HDDV+D A RRG ++NF+ G+K AV AGD +L A + + N
Sbjct: 80 HDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKM 139
Query: 213 XXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 272
E ++ S + + + Y++ K+ +L + + ALL G+ E ++ G
Sbjct: 140 SEAELIE-QLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED---LYNLGVT 195
Query: 273 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQ 326
+G YQ+ DD++DF G +GK D+++G+ + P++ AME+FP+ R + E
Sbjct: 196 IGTIYQMFDDIMDFAGME-KIGKDGFLDLKNGVASFPLVTAMEKFPEARQMFEN 248
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 73 RSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132
S+ + E P L E+ G GKR RP +LLL++ + +
Sbjct: 20 ESITLIEDPGLKKXVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGS 60
Query: 133 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 192
+R A E H ASL+HDD+LD RR + S G A+L GD+L++++ +A
Sbjct: 61 YSRSLNAALAVEXXHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IA 119
Query: 193 LASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 252
S GE + + + DY+ + Y KTASL + S
Sbjct: 120 FISPYGEKVIQDFGKAGXDXAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIG 178
Query: 253 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286
A G E+A +G LG AYQ++DD+L+F
Sbjct: 179 AYTGGAEEELAERFSHFGNALGTAYQIVDDILEF 212
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 108/252 (42%), Gaps = 29/252 (11%)
Query: 72 LRSMVVAEVPKLASAAEYFFKM---------GVEGKRFRPTVLLLMATALNVRVPEPLHD 122
LR+ V P + + A Y F G GK RP + +L A PE
Sbjct: 20 LRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGA-APEV--- 75
Query: 123 GVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAG 182
GV A+A EL +H SLLHDD++D + RR ++ V G A+L G
Sbjct: 76 GVPGAVAVEL-------------VHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVG 122
Query: 183 DFLLSRA---CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYY 239
D L + A + L +++ G+ ++ R S++ ++
Sbjct: 123 DALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGN 182
Query: 240 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 299
KT +L++ + A+L G A YG +LGLA+Q +DD+L G + GK + S
Sbjct: 183 KTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWS 242
Query: 300 DIRHGIITAPIL 311
D+R + P++
Sbjct: 243 DLRQRKKSLPVV 254
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 143 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS----- 195
EMIH SL+HDD+ +D+ D RRG + + G +AVLAGD LLS A +A+
Sbjct: 72 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHMAFGESVAVLAGDALLSFAFEHVAAATKGA 131
Query: 196 ----LKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKA 251
+ G+ + + + +D+ ++KTA+L+ S
Sbjct: 132 PPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLDHLEFIHHHKTAALLQGSVVL 191
Query: 252 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPIL 311
A+L G E + +GL +Q++DD+LD T +S LGK + D+ T P L
Sbjct: 192 GAILGGGKEEEVAKLRKFANCIGLLFQVVDDILDVTKSSKELGKTAGKDLVADKTTYPKL 251
Query: 312 FAMEE 316
+E+
Sbjct: 252 IGVEK 256
>pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis
pdb|4GP1|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp
pdb|4GP2|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
pdb|4GP2|B Chain B, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target
Efi-501992) From Pyrobaculum Calidifontis Complexed With
Dmapp And Magnesium
Length = 358
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 90 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 149
+++ GKR RP LL +A A +A++ + R A I E+IH
Sbjct: 38 LYQVKTGGKRLRP--LLTLAAA--------------EAVSGQWRPALPAAA-IVELIHNY 80
Query: 150 SLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL---KNXXXXXXXX 206
SL++DD++D D RRG+ ++ G+ A+L G + R + A L K
Sbjct: 81 SLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVG--IWYREAIEEAVLDTPKPTLFAKEVA 138
Query: 207 XXXXXXXXGETMQMTTSSDQR------------CSMDYYMQKTYYKTASLISNSCKAIAL 254
GE + + + R ++D Y++ KT +LI+ + K L
Sbjct: 139 EVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVL 198
Query: 255 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 303
+A A+++G G+A+Q+IDDVLD G GK DI+
Sbjct: 199 SVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKE 247
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 102/240 (42%), Gaps = 35/240 (14%)
Query: 91 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 150
+ + V GKR RP ++LL + L A EMIH S
Sbjct: 68 YSINVGGKRIRPILMLLSYYIYKSDYKKIL-----------------TPAMAIEMIHTYS 110
Query: 151 LLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA--SLKNXXXXXXXX 206
L+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A L SL+
Sbjct: 111 LIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKAT 170
Query: 207 XXXXXXX------XGETMQMTTSSDQRCS---MDYYMQKTYYKTASLISNSCKAIALLAG 257
G+ + + + S +DY K KT LI S + A+LA
Sbjct: 171 KIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLK---KTGELIKASIMSGAVLA- 226
Query: 258 QTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 316
+ +E I + +G LGLA+Q+ DD+LD G + LGK D +F +EE
Sbjct: 227 EASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEE 286
>pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
pdb|4F62|B Chain B, Crystal Structure Of A Putative Farnesyl-Diphosphate
Synthase From Marinomonas Sp. Med121 (Target Efi-501980)
Length = 317
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 102/248 (41%), Gaps = 29/248 (11%)
Query: 78 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 137
A +L +A Y G GKR RP +L A+A V L D AL
Sbjct: 28 APANQLHNAMRYSLFNG--GKRIRP--MLTYASAQLVGDISSLTDASAAAL--------- 74
Query: 138 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 195
E IH SL+HDD+ +D+ + RRG + + A+LAGD L + A L++
Sbjct: 75 ------ESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSN 128
Query: 196 LKNXXXXXXXXXXXXXXXXGETMQMTT-------SSDQRCSMDYYMQKTYYKTASLISNS 248
+ M T S ++ S+ Q +KT +LI S
Sbjct: 129 PTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKAS 188
Query: 249 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 307
+ AL GQ + D Y +GLA+Q+ DD++D T + +LGK SD T
Sbjct: 189 VRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKAT 248
Query: 308 APILFAME 315
P L ++
Sbjct: 249 YPKLLGLD 256
>pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10)
(Tm0161) From Thermotoga Maritima At 1.90 A Resolution
Length = 284
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 95 VEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 154
V G R RP ++L + L V E L D +A E+ H ASL+HD
Sbjct: 44 VGGXRIRPLLVLTLGEDLGVE-EEXLLD----------------VAVAVELFHTASLIHD 86
Query: 155 DV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXX 212
D+ +D+AD RRG S + G +A+LAGD L A ++ + N
Sbjct: 87 DLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXL 146
Query: 213 XXGETMQMTTSSDQRCSMDYYMQKTY-YKTASLISNSCKAIALLAGQTAEVAILAFDYGK 271
GE M + +++ Y + T +L + A +L G L G+
Sbjct: 147 LLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXL---LGE 203
Query: 272 NLGLAYQLIDDVLDFTGTSASLGK 295
G+A+Q+ DD+ D G+ +GK
Sbjct: 204 XFGVAFQIYDDLXDILGSFEKVGK 227
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 29/236 (12%)
Query: 80 VPKLASAAEYF-----FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134
+PK+ S +F + GK FR +LL + + PE L+ ++ ALA E
Sbjct: 17 LPKVESFHPFFNEALALXLKAGGKHFRAQLLL---SVVQSNKPELLNQALDVALALE--- 70
Query: 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 192
IH SL+HDD+ D+AD RRGI +L+ A+L GD L + A +
Sbjct: 71 ----------FIHTYSLIHDDLPAXDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLV 120
Query: 193 L--ASLKNXXXXXXXXXXXXXX-XXGETMQMTTS---SDQRCSMDYYMQKTYYKTASLIS 246
L A LK+ G + D+R S++ +KTA LI+
Sbjct: 121 LSHAHLKDEIKIKLIKTLAFNAGLNGXVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIA 180
Query: 247 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 302
+ K + E + + G LGL +Q+ DD++D T + GK + +DI
Sbjct: 181 AALKXGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIH 236
>pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
pdb|3P8L|B Chain B, Crystal Structure Of Polyprenyl Synthase From Enterococcus
Faecalis V583
Length = 302
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 79 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 138
E +L A Y G GKR RP ++L A E+ T+
Sbjct: 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQ----------------KEMETQDYQ 75
Query: 139 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 196
+A EMIH SL+HDD+ D RRG + + V G A+LAGD LL+ A L+
Sbjct: 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLS 135
Query: 197 KNXXXXXXXXXXXXXXXXGE----TMQMTTSSDQRCSMDYYMQKTYY--KTASLISNSCK 250
+ G + QM ++ S+ + KT +LI +
Sbjct: 136 QLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALI 195
Query: 251 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295
A +LA QT EV L + + GLA+Q+ DD+LD T T A LGK
Sbjct: 196 AGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGK 240
>pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
pdb|3LOM|B Chain B, Crystal Structure Of Geranyltransferase From Legionella
Pneumophila
Length = 313
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 34/264 (12%)
Query: 70 KRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 129
++L + ++ P++ SA Y G GKR RP ++ L ++V GV D +A
Sbjct: 25 EQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVD------QGVLDIIA 76
Query: 130 TELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLS 187
L E+ H SL+HDD+ +D+ D RRG S + A+L GD + +
Sbjct: 77 AAL-----------ELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQA 125
Query: 188 RACVAL----------ASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT 237
A L A + G+++ ++ + + + +
Sbjct: 126 LAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIH 185
Query: 238 YYKTASLISNSCKAIALLAGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 295
KT LI +C + L A I + YGK++GL +Q+ DD LD + LGK
Sbjct: 186 LLKTGKLIL-ACFEMVLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGK 244
Query: 296 GSLSDIRHGIITAPILFAMEEFPQ 319
G SD + T LF ++ +
Sbjct: 245 GRSSDQANQKTTFATLFNKQQLEE 268
>pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 34/250 (13%)
Query: 56 DPFSLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNV 114
DP S + + + K L S V P K+ A Y G GKR RP VL + A L
Sbjct: 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAG--GKRVRP-VLCIAACELV- 67
Query: 115 RVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFV 172
G E++LA A E IH SL+HDD+ D+ D RRG + + V
Sbjct: 68 --------GGEESLAXP-------AACAVEXIHTXSLIHDDLPCXDNDDLRRGKPTNHKV 112
Query: 173 MGNKLAVLAGDFLLSRACVALASLKNXXXX----------XXXXXXXXXXXXGETMQMTT 222
G +AVLAGD LLS A LAS + G+ + +++
Sbjct: 113 YGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISS 172
Query: 223 SS--DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 280
+++ +KTA+L+ S ++ G + E + + +GL +Q++
Sbjct: 173 EGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 232
Query: 281 DDVLDFTGTS 290
DD+LD T +S
Sbjct: 233 DDILDVTKSS 242
>pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3M9U|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3PDE|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|C Chain C, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
pdb|3PDE|D Chain D, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Isoprenyl Diphosphate And Magnesium
Length = 309
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 82 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVR-VPEPLHDGVEDALATELRTRQQCIA 140
+LA+A Y G GKR RP + + +L V VPE R + +A
Sbjct: 35 QLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFVPE--------------RHWRPVMA 78
Query: 141 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 198
E++H SL+HDD+ +D+ RRG + + G +A LAGD LL+ A L +
Sbjct: 79 --LELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL 136
Query: 199 XXXXXXXXXXXXXXXXGETMQMTTSS----DQRCSMDYYMQKTYY--KTASLISNSCKAI 252
G + + + + ++ + + KT +L+ + +A
Sbjct: 137 PATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQA- 195
Query: 253 ALLAGQTAEVAILAF-DYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 309
L+ GQ E A+ + GLA+Q+ DD+LD + A +GK + D T P
Sbjct: 196 GLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYP 253
>pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
pdb|1RQJ|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Risedronate
Length = 299
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 140 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197
A E IH SL+HDD+ D RRG+ + + G A+LAGD L + A L+
Sbjct: 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 129
Query: 198 ----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 247
+ G+ + + + +D + +KT +LI
Sbjct: 130 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 188
Query: 248 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 306
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 189 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248
Query: 307 TAPILFAMEE 316
T P L +E+
Sbjct: 249 TYPALLGLEQ 258
>pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
pdb|1RQI|B Chain B, Active Conformation Of Farnesyl Pyrophosphate Synthase
Bound To Isopentyl Pyrophosphate And Dimethylallyl S-
Thiolodiphosphate
Length = 300
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 140 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197
A E IH SL+HDD+ D RRG+ + + G A+LAGD L + A L+
Sbjct: 71 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAD 130
Query: 198 ----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 247
+ G+ + + + +D + +KT +LI
Sbjct: 131 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 189
Query: 248 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 306
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 190 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 249
Query: 307 TAPILFAMEE 316
T P L +E+
Sbjct: 250 TYPALLGLEQ 259
>pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
pdb|2FOR|B Chain B, Crystal Structure Of The Shigella Flexneri Farnesyl
Pyrophosphate Synthase Complex With An Isopentenyl
Pyrophosphate
Length = 323
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 140 AEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197
A E IH SL+HDD+ D RRG+ + + G A+LAGD L + A L+
Sbjct: 94 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAN 153
Query: 198 ----------NXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 247
+ G+ + + + +D + +KT +LI
Sbjct: 154 MPEVSDRDRISMISELASASGIAGMCGGQALDLDAEG-KHVPLDALERIHRHKTGALIRA 212
Query: 248 SCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 306
+ + AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G
Sbjct: 213 AVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 272
Query: 307 TAPILFAMEE 316
T P L +E+
Sbjct: 273 TYPALLGLEQ 282
>pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
pdb|1RTR|B Chain B, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate
Synthase
Length = 301
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 30/225 (13%)
Query: 90 FFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVA 149
+ + GKR RP +LLL +LN G++ A+A E MIH
Sbjct: 35 LYSLNAGGKRIRPVLLLLTLDSLNTEYEL----GMKSAIALE-------------MIHTY 77
Query: 150 SLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS-------LKNXX 200
SL+HDD+ +D+ D RRG + + V G A+LAGD LL++A ++S +K
Sbjct: 78 SLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKV 137
Query: 201 XXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--Q 258
G M S Q ++ KT +L++ + + A +A
Sbjct: 138 LQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDD 197
Query: 259 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 303
T + + ++ Y +LG+ +Q+ DD+LD G A LGK SD+ +
Sbjct: 198 TTKEHLESYSY--HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLEN 240
>pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate
Synthase From Corynebacterium Glutamicum
pdb|3QQV|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Isoprenyl
Diphosphate And Magnesium
Length = 380
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 144 EMIHVASLLHDDVLDDADTRRGIGSL-----------NFV-----MGNKLAVLAGDFLLS 187
E I +L+HDD++D +DTRRG ++ NF G +++LAGD L
Sbjct: 98 EFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDXALV 157
Query: 188 RA----------CVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKT 237
A ALA ++ G+ + + S S++
Sbjct: 158 WAEDXLQDSGLSAEALARTRDAWRGXRTEVIG-----GQLLDIYLESHANESVELADSVN 212
Query: 238 YYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 296
+KTA+ I+ A +AG + ++ YG ++G+A+QL DD+L G A GK
Sbjct: 213 RFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKP 272
Query: 297 SLSDIRHGIITAPILFAME----EFPQLRTVVEQG 327
+ DIR G T + A++ + P+ T + G
Sbjct: 273 AGDDIREGKRTVLLALALQRADKQSPEAATAIRAG 307
>pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio
Cholerae
Length = 302
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 99/245 (40%), Gaps = 31/245 (12%)
Query: 83 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 142
L A Y +G GKR RP ++ + L + ++L T A
Sbjct: 38 LIEAMRYGLLLG--GKRARPYLVYITGQMLGCEL-------------SDLDTP----ASA 78
Query: 143 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA----SL 196
E IH SL+HDD+ +DD + RRG + + A+L GD L + A LA S
Sbjct: 79 VECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSA 138
Query: 197 KNXXXXXXXXXXXXXXXXGETMQMTTSSD-----QRCSMDYYMQKTYYKTASLISNSCKA 251
+ M + + D + S++ KT +L+ + +
Sbjct: 139 AGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRL 198
Query: 252 IALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 310
AL AG+ + D Y + +GLA+Q+ DD+LD + +LGK SD T P
Sbjct: 199 GALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPA 258
Query: 311 LFAME 315
L +E
Sbjct: 259 LLGLE 263
>pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
pdb|3LVS|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase From
Rhodobacter Capsulatus Sb1003
Length = 298
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 144 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA---CV--ALASL 196
E +H SL+HDD+ +D+ D RRG+ +++ + AVLAGD L + A C L S
Sbjct: 72 EALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 131
Query: 197 KNXXXXXXXXXXXXXXXX---GETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAI 252
+N G+ + + + ++D ++ KT +LIS + +A
Sbjct: 132 ENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAG 191
Query: 253 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295
A+LAG A+ L Y LGLA+Q+ DD+LD G + GK
Sbjct: 192 AILAG--ADRGPLTA-YATALGLAFQIADDILDVEGNEEAAGK 231
>pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
pdb|4FP4|B Chain B, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target
Efi-501993) From Pyrobaculum Calidifontis
Length = 285
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 140 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNX 199
A I E++HV SLL DDV+D D RRGI + + G+ A++A D+L++ + + +A
Sbjct: 74 AAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAES-IKMAVNLGA 132
Query: 200 XXXXXXXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 259
G+ + + D+ +KTA LI + ++ G+
Sbjct: 133 DVVTYLADVAQRLSVGQALDLEGERDKAAE---------FKTAPLIEAALVMPLVILGRR 183
Query: 260 AEVAILAFDYGKNLGLAYQLIDDVLD 285
E+ A G LG+ YQ DD D
Sbjct: 184 -ELIETAKKLGTKLGILYQYSDDYSD 208
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 25/191 (13%)
Query: 96 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 155
+GKRFR T+ + AL + D ALA E+ +H ASL DD
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALDD 90
Query: 156 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 215
++D TRRG + V GN+ + ++L+ A + + G
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELEKDTSVG 150
Query: 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 275
M +SD Y++ KT SL S ++ A + D GK LG+
Sbjct: 151 ALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLGI 202
Query: 276 AYQLIDDVLDF 286
YQ+IDD +D+
Sbjct: 203 IYQVIDDFVDY 213
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 87/219 (39%), Gaps = 8/219 (3%)
Query: 137 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 196
Q I E+TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L
Sbjct: 48 QIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTL 107
Query: 197 KNXXXXXXXXXXXXXXXXGETMQMTTSSDQRC-SMDYYMQKTYYKTASLISNSCKAIALL 255
+ G+ + + + C + + Y KT L + + L
Sbjct: 108 DHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLF 167
Query: 256 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 315
+ ++ L LGL +Q+ DD + S K D+ G + P + A+
Sbjct: 168 SDYKEDLKPLL----NTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIW 223
Query: 316 EFPQLRTVVEQGFEDSSNVDI---ALEYLGKSRGIQKTR 351
P+ V + + N+DI + YL + TR
Sbjct: 224 SRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTR 262
>pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 98/252 (38%), Gaps = 49/252 (19%)
Query: 46 VKDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTV 104
++ + DP S + + + K L S V P K+ A Y G GKR RP V
Sbjct: 2 MRGSHHHHHTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRP-V 58
Query: 105 LLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 164
L + A L G E++LA A EMIH SL+HDD
Sbjct: 59 LCIAACELV---------GGEESLAMP-------AACAVEMIHTMSLIHDD--------- 93
Query: 165 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXGETMQMTTSS 224
V G +AVLAGD LLS A LAS + GE + +
Sbjct: 94 -------VYGEDVAVLAGDALLSFAFEHLASATS----SEVSPARVVRAVGELAKAIGTE 142
Query: 225 D---------QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 275
+++ +KTA+L+ S ++ G + E + + +GL
Sbjct: 143 GLVAGQVVDISNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGL 202
Query: 276 AYQLIDDVLDFT 287
+Q++DD+LD T
Sbjct: 203 LFQVVDDILDVT 214
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 96 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 155
+GKRFR T+ + AL + D ALA E+ +H ASL D
Sbjct: 48 DGKRFRGTLNMFFTVALG----GDIKDSYGGALAIEI-------------LHSASLALCD 90
Query: 156 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXXG 215
++D TRRG + V GN+ + ++L+ A + + G
Sbjct: 91 IVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYGDDALNTSIELWKDTSVG 150
Query: 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGL 275
M +SD Y++ KT SL S ++ A + D GK LG+
Sbjct: 151 ALRDMYDNSD-------YIRTIELKTGSLFKLST-VLSAYASKHYNTKQQMLDVGKYLGI 202
Query: 276 AYQLIDDVLDF 286
YQ+IDD +D+
Sbjct: 203 IYQVIDDFVDY 213
>pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From
Agrobacterium Tumefaciens
Length = 335
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GKR RP +++ L LH G E +H SL+HDD+
Sbjct: 85 GKRLRPFLVIESVALLGGDAEAGLHVGA-----------------ALECLHCYSLVHDDL 127
Query: 157 LDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXXXXXXXXXX 214
D RRG +++ A+LAGD LL+ A +AS N
Sbjct: 128 PAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLAR 187
Query: 215 GETMQMT--------TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAIL 265
+ + + D + KT +L+ +C+A A++AG AE L
Sbjct: 188 AAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRL 247
Query: 266 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 304
+G+ +GL++QL DD+LD T +A++GK + D G
Sbjct: 248 RL-FGEKIGLSFQLADDLLDLTADAATMGKATGKDAARG 285
>pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|B Chain B, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|C Chain C, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
pdb|1WMW|D Chain D, Crystal Structure Of Geranulgeranyl Diphosphate Synthase
From Thermus Thermophilus
Length = 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 30/211 (14%)
Query: 119 PLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLA 178
PL G+E A A EL Q + L+HDD+ D ++ RRG +L+ + LA
Sbjct: 57 PLEAGLEAATALELF--QNWV-----------LVHDDIEDGSEERRGRPALHRLHPMPLA 103
Query: 179 VLAGDFLLSRACVALA-----SLKNXXXXXXXXXXXXXXXXGETMQMTTSSDQRCSM--- 230
+ AGD + + LA L G+ + + + +
Sbjct: 104 LNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPE 163
Query: 231 DYY---MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 287
DY+ K Y TA + ALLAG+T A + G LG A+Q++DDVL+
Sbjct: 164 DYFRMVAHKAAYYTAV---APLRLGALLAGKTPPAAY--EEGGLRLGTAFQIVDDVLNLE 218
Query: 288 GTSASLGKGSLSDIRHGIITAPILFAMEEFP 318
G A GK D+ G T +L +EE P
Sbjct: 219 GGEAY-GKERAGDLYEGKRTLILLRFLEEAP 248
>pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
pdb|3LLW|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori 26695
Length = 311
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 90 FFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 148
FF+M + G KRFRP + L + AL G +D + +T IA E +H
Sbjct: 40 FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKIALSIECLHT 88
Query: 149 ASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXX 206
SL+HDD+ +D+A RR +L+ AVL GD L+ L S
Sbjct: 89 YSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGD-ALNTYSFELLSNALLESHIIVE 147
Query: 207 XXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLISNSCKAIALL 255
G M ++D Y + T +KTA LIS S + L+
Sbjct: 148 LIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLISASL-IMGLV 202
Query: 256 AGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 295
A + + + +G +GL +Q++DD++D T GK
Sbjct: 203 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 244
>pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|B Chain B, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|C Chain C, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
pdb|3Q1O|D Chain D, Crystal Structure Of Geranyltransferase From Helicobacter
Pylori Complexed With Magnesium And Isoprenyl
Diphosphate
Length = 310
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 33/222 (14%)
Query: 90 FFKMGVEG-KRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHV 148
FF+M + G KRFRP + L + AL G +D + +T IA E +H
Sbjct: 47 FFEMVLNGGKRFRPKLFLAVLCAL---------VGQKDY--SNQQTEYFKIALSIECLHT 95
Query: 149 ASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXXXXX 206
SL+HDD+ +D+A RR +L+ AVL GD L+ L S
Sbjct: 96 YSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGD-ALNTYSFELLSNALLESHIIVE 154
Query: 207 XXXXXXXXGETMQMTTSSDQRCSMDYYMQKT-----------YYKTASLISNSCKAIALL 255
G M ++D Y + T +KTA LIS S + L+
Sbjct: 155 LIKILSANGGIKGMILGQ----ALDCYFENTPLNLEQLTFLHEHKTAKLISASL-IMGLV 209
Query: 256 AGQTAEVAILAF--DYGKNLGLAYQLIDDVLDFTGTSASLGK 295
A + + + +G +GL +Q++DD++D T GK
Sbjct: 210 ASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGK 251
>pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5
pdb|3LSN|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
Length = 304
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 102/252 (40%), Gaps = 39/252 (15%)
Query: 79 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 138
E+ +L A Y G GKR RP + AL + PE +
Sbjct: 28 ELARLYEAXRYSVXNG--GKRVRPLLAYAACEALGGK-PE----------------QANG 68
Query: 139 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVAL--A 194
A E+IH SL+HDD+ D RRG + + A+LAGD L S A AL
Sbjct: 69 AACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDP 128
Query: 195 SLKNXXXXXXXXXXXXXXXXGETMQMTTSS-----------DQRCSMDYYMQKTYYKTAS 243
+L + DQ+ +++Y + +KT +
Sbjct: 129 ALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQ-ALEYXHR---HKTGA 184
Query: 244 LISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 302
LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 185 LIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIA 244
Query: 303 HGIITAPILFAM 314
T P L +
Sbjct: 245 RDKPTYPALLGL 256
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 27/241 (11%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GK FR +++ + +N+ +D LA +++I E++H +SLL DD+
Sbjct: 40 GKNFRLNLIVQINRVMNLP---------KDQLA--------IVSQIVELLHNSSLLIDDI 82
Query: 157 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----XXXXXXXXXXXXX 211
D+A RRG + + + G + +++ RA ++ L
Sbjct: 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELIN 142
Query: 212 XXXGETMQMTTS---SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFD 268
G+ + + + + + Y+ KT L + + + L+ + L
Sbjct: 143 LHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLV-P 201
Query: 269 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGF 328
+ LG+ YQ+ DD L+ S KG DI G ++ PI+ A+ F + + EQ
Sbjct: 202 FINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHAL-NFTKTKGQTEQHN 260
Query: 329 E 329
E
Sbjct: 261 E 261
>pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Pseudomonas Fluorescens Pf-5 Complexed With Magnesium
And Isoprenyl Pyrophosphate
Length = 303
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 102/252 (40%), Gaps = 39/252 (15%)
Query: 79 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 138
E+ +L A Y G GKR RP + AL + PE +
Sbjct: 35 ELARLYEAXRYSVXNG--GKRVRPLLAYAACEALGGK-PE----------------QANG 75
Query: 139 IAEITEMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVAL--A 194
A E+IH SL+HDD+ D RRG + + A+LAGD L S A AL
Sbjct: 76 AACAVELIHAYSLVHDDLPAXDDDDLRRGQPTTHKAFDEAXAILAGDGLQSLAFSALLDP 135
Query: 195 SLKNXXXXXXXXXXXXXXXXGETMQMTTSS-----------DQRCSMDYYMQKTYYKTAS 243
+L + DQ+ +++Y + +KT +
Sbjct: 136 ALSDASAEIRLRXVTTLAQAAGPAGXVGGQAIDLGSVGLKLDQQ-ALEYXHR---HKTGA 191
Query: 244 LISNSCKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 302
LI S AL +G+ + + A Y + +GLA+Q+ DD+LD +A+LGK +DI
Sbjct: 192 LIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIA 251
Query: 303 HGIITAPILFAM 314
T P L +
Sbjct: 252 RDKPTYPALLGL 263
>pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
pdb|3TS7|B Chain B, Crystal Structure Of Farnesyl Diphosphate Synthase (Target
Efi-501951) From Methylococcus Capsulatus
Length = 324
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 91/232 (39%), Gaps = 33/232 (14%)
Query: 97 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 156
GKR RP LL AT + V L DG A+ E IHV SL+HDD+
Sbjct: 50 GKRMRP--LLTYATGQTIGVAADLLDGPACAV---------------EFIHVYSLIHDDL 92
Query: 157 LDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNXXXXX----------X 204
D RRG + + A+LAGD L + A LA +
Sbjct: 93 PAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLA 152
Query: 205 XXXXXXXXXXGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLA--GQTAEV 262
G+ + + S ++ + KT +LI S + +A LA G AE
Sbjct: 153 KASGPAGMVGGQAIDL-ASVGKKLDLPGLENMHIRKTGALIRASVR-LACLARPGLPAEQ 210
Query: 263 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 314
Y K +GLA+Q+ DD+LD + +LGK D H P L +
Sbjct: 211 FDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGL 262
>pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
pdb|3M0G|B Chain B, Crystal Structure Of Putative Farnesyl Diphosphate
Synthase From Rhodobacter Capsulatus
Length = 297
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 144 EMIHVASLLHDDVLDDADT--RRGIGSLNFVMGNKLAVLAGDFLLSRA---CV--ALASL 196
E +H SL+HDD + RRG+ +++ + AVLAGD L + A C L S
Sbjct: 71 EALHAYSLVHDDXPCXDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSA 130
Query: 197 KNXXXXXXXXXXXXXXXX---GETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAI 252
+N G+ + + + ++D ++ KT +LIS + +A
Sbjct: 131 ENRVALVAALAQASGAEGXVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAG 190
Query: 253 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295
A+LAG A+ L Y LGLA+Q+ DD+LD G + GK
Sbjct: 191 AILAG--ADRGPLTA-YATALGLAFQIADDILDVEGNEEAAGK 230
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 240 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 299
KT S I+++ K I+ AG V I G +++ + + F +LG +
Sbjct: 181 KTGSNITHTAKIISSTAGYRVPVTIERLKDG-TFHVSFPAVPGKIPFVILMRALGILTDR 239
Query: 300 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 352
DI + + P + E FP L EQ +NVD AL+++G I + RE
Sbjct: 240 DIVYAVSLDPEI-QNELFPSL----EQA-SSIANVDDALDFIGSRVAIGQKRE 286
>pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 1124
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 240 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 299
KT S I+++ K I+ AG V I G +++ + + F +LG +
Sbjct: 178 KTGSNITHTAKIISSTAGYRVPVTIERLKDG-TFHVSFPAVPGKIPFVILMRALGILTDR 236
Query: 300 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRE 352
DI + + P + E FP L EQ +NVD AL+++G I + RE
Sbjct: 237 DIVYAVSLDPEV-QNELFPSL----EQA-SSIANVDDALDFIGSRVAIGQKRE 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,154,399
Number of Sequences: 62578
Number of extensions: 317475
Number of successful extensions: 880
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 84
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)