Query 016097
Match_columns 395
No_of_seqs 234 out of 1663
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 7E-80 1.5E-84 620.3 40.3 391 1-395 1-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 1.6E-70 3.4E-75 540.2 36.6 318 56-395 5-322 (322)
3 PLN02857 octaprenyl-diphosphat 100.0 1.7E-70 3.6E-75 552.7 35.9 322 55-395 95-416 (416)
4 TIGR02748 GerC3_HepT heptapren 100.0 5E-70 1.1E-74 536.5 35.8 313 56-395 4-319 (319)
5 CHL00151 preA prenyl transfera 100.0 1.5E-69 3.2E-74 534.0 35.3 318 55-394 5-322 (323)
6 PRK10888 octaprenyl diphosphat 100.0 4.3E-69 9.3E-74 530.0 36.2 315 56-395 5-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 2.2E-68 4.7E-73 525.1 36.0 317 57-395 3-322 (322)
8 KOG0776 Geranylgeranyl pyropho 100.0 5.4E-64 1.2E-68 490.3 31.8 312 54-393 64-384 (384)
9 PRK10581 geranyltranstransfera 100.0 6.2E-62 1.3E-66 474.3 31.6 279 59-395 5-299 (299)
10 cd00685 Trans_IPPS_HT Trans-Is 100.0 4.5E-57 9.7E-62 432.8 29.0 254 80-393 3-259 (259)
11 PF00348 polyprenyl_synt: Poly 100.0 6.4E-56 1.4E-60 425.1 16.1 249 85-354 3-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 4.8E-43 1E-47 330.1 26.6 235 100-393 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 1.9E-37 4.1E-42 281.4 21.5 269 81-372 21-293 (322)
14 KOG0711 Polyprenyl synthetase 100.0 1.8E-35 3.8E-40 280.3 26.8 298 80-395 37-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 4.5E-23 9.7E-28 190.3 26.8 226 137-390 13-241 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.9 0.00048 1E-08 64.1 14.4 104 135-246 34-138 (212)
17 PF00494 SQS_PSY: Squalene/phy 96.7 0.06 1.3E-06 51.5 14.8 140 205-372 89-229 (267)
18 TIGR01559 squal_synth farnesyl 96.1 0.1 2.2E-06 52.2 12.9 151 199-372 100-250 (336)
19 TIGR03465 HpnD squalene syntha 95.9 0.3 6.6E-06 46.9 15.0 135 207-372 85-219 (266)
20 PLN02632 phytoene synthase 95.9 0.24 5.3E-06 49.4 14.6 139 207-372 140-280 (334)
21 cd00683 Trans_IPPS_HH Trans-Is 95.6 0.35 7.5E-06 46.4 14.0 136 207-372 93-228 (265)
22 TIGR03464 HpnC squalene syntha 95.4 0.42 9.1E-06 46.0 13.9 135 207-372 86-220 (266)
23 cd00687 Terpene_cyclase_nonpla 91.6 5.6 0.00012 38.5 14.3 90 198-289 127-221 (303)
24 COG1562 ERG9 Phytoene/squalene 89.6 20 0.00043 35.1 15.9 137 206-372 102-238 (288)
25 PRK12884 ubiA prenyltransferas 88.3 19 0.00042 34.6 14.9 158 136-316 39-199 (279)
26 PRK12882 ubiA prenyltransferas 83.7 31 0.00068 33.2 13.7 57 138-194 42-101 (276)
27 cd00868 Terpene_cyclase_C1 Ter 77.5 65 0.0014 30.4 16.6 88 200-289 122-215 (284)
28 PRK09573 (S)-2,3-di-O-geranylg 75.2 81 0.0018 30.4 13.7 56 137-192 40-98 (279)
29 PF01040 UbiA: UbiA prenyltran 64.3 1.2E+02 0.0026 28.0 15.3 147 145-314 34-188 (257)
30 PRK12883 ubiA prenyltransferas 62.3 1.2E+02 0.0026 29.1 11.7 51 140-190 43-96 (277)
31 TIGR01474 ubiA_proteo 4-hydrox 57.8 1.8E+02 0.004 28.0 13.9 58 137-194 43-105 (281)
32 PRK07566 bacteriochlorophyll/c 57.6 2E+02 0.0043 28.3 13.5 51 141-191 72-125 (314)
33 PF06783 UPF0239: Uncharacteri 55.9 13 0.00029 29.5 3.0 25 259-283 14-38 (85)
34 PRK12872 ubiA prenyltransferas 54.1 1.8E+02 0.0039 27.8 11.4 33 273-316 173-205 (285)
35 TIGR02748 GerC3_HepT heptapren 50.9 1.7E+02 0.0038 28.8 10.9 47 254-312 56-102 (319)
36 PLN00012 chlorophyll synthetas 49.7 2.1E+02 0.0045 29.1 11.4 154 136-312 125-292 (375)
37 PF03936 Terpene_synth_C: Terp 47.9 1.6E+02 0.0034 27.5 9.8 86 201-287 138-228 (270)
38 COG0382 UbiA 4-hydroxybenzoate 45.9 2.8E+02 0.0062 26.7 16.3 157 136-316 49-211 (289)
39 PRK10888 octaprenyl diphosphat 45.3 3.2E+02 0.0069 27.1 13.1 47 254-312 57-103 (323)
40 PRK10581 geranyltranstransfera 40.0 1.1E+02 0.0024 30.0 7.5 60 137-196 206-277 (299)
41 TIGR01475 ubiA_other putative 37.3 3.8E+02 0.0083 25.7 11.6 50 137-186 39-93 (282)
42 PRK12848 ubiA 4-hydroxybenzoat 36.3 4E+02 0.0087 25.6 12.5 52 141-192 49-105 (282)
43 PRK12870 ubiA 4-hydroxybenzoat 36.1 4.1E+02 0.009 25.8 14.7 57 138-194 50-111 (290)
44 PRK12871 ubiA prenyltransferas 36.1 4.2E+02 0.0092 25.9 13.1 46 146-192 54-113 (297)
45 PRK06080 1,4-dihydroxy-2-napht 35.5 2.8E+02 0.006 26.8 9.5 81 229-311 2-89 (293)
46 TIGR02056 ChlG chlorophyll syn 34.3 4.5E+02 0.0098 25.7 13.8 51 140-190 60-113 (306)
47 PRK12878 ubiA 4-hydroxybenzoat 33.9 4.7E+02 0.01 25.8 12.9 58 137-194 75-137 (314)
48 PRK13591 ubiA prenyltransferas 33.7 4.8E+02 0.01 25.8 14.0 31 275-316 193-223 (307)
49 PRK13105 ubiA prenyltransferas 28.5 1.1E+02 0.0023 30.0 5.2 60 242-312 140-200 (282)
50 PF00348 polyprenyl_synt: Poly 28.0 5.2E+02 0.011 24.4 10.6 51 250-312 22-72 (260)
51 cd00685 Trans_IPPS_HT Trans-Is 27.9 5.2E+02 0.011 24.3 10.7 44 257-312 34-78 (259)
52 cd00684 Terpene_cyclase_plant_ 27.3 7.8E+02 0.017 26.2 16.1 104 198-315 354-465 (542)
53 PRK13387 1,4-dihydroxy-2-napht 21.9 2.2E+02 0.0048 28.1 6.2 61 229-289 2-67 (317)
54 PRK07566 bacteriochlorophyll/c 21.3 1.4E+02 0.0031 29.4 4.6 54 137-190 192-246 (314)
55 PRK06080 1,4-dihydroxy-2-napht 20.3 4.1E+02 0.0088 25.6 7.6 55 136-190 170-225 (293)
56 PRK12878 ubiA 4-hydroxybenzoat 20.1 3.1E+02 0.0067 27.1 6.7 78 228-309 28-119 (314)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=7e-80 Score=620.34 Aligned_cols=391 Identities=78% Similarity=1.093 Sum_probs=345.3
Q ss_pred ChhhhhhhhhcccCCCCCCCcccCCCCCCCCC-----CCchhhhhhcCCCCC--------------------------CC
Q 016097 1 MLIYRGLSRISRISKKTSFGRRWLPSHPLLSG-----ASHSAAAAAADSSVK--------------------------DT 49 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------------------------~~ 49 (395)
|+|+|+++||+ +.+.++++|++|+..... .+....+ ..+++++ .+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (422)
T PLN02890 1 MLLSRRVARIS---ATSGGGRGAYGCSQSLASSRAALLGRHGHP-LSQSTSKVVGCRGTYSVSSRWLHGFQYQVRHQSSS 76 (422)
T ss_pred CCcchHHHHHh---ccccccccchhhhhhhcccccccCCCCccc-ccCCCccccccccceeechhhhhhhhhhchhcccc
Confidence 89999999999 788889999998442211 1222222 2333333 35
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 016097 50 DSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 129 (395)
Q Consensus 50 ~~~~~~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~ 129 (395)
.+++..++|+.+.++|+.|+++|++.+.+..|.+.+++.|++..|.+|||+||+|++++++++|.+.++..++...+...
T Consensus 77 ~~~~~~~~~~~i~~~L~~v~~~L~~~v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~ 156 (422)
T PLN02890 77 LVEEQLDPFSLVADELSLLANKLRSMVVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVA 156 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhc
Confidence 57788899999999999999999999999999999999999987777999999999999999986432211001111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 016097 130 TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 209 (395)
Q Consensus 130 ~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~ 209 (395)
.++.++++.+|+++||||+||||||||||++++|||+||+|.+||++.||++||||+++|+..++..++++++..+++++
T Consensus 157 ~~~~~~~~~~AaavEliH~ASLVHDDIiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~ 236 (422)
T PLN02890 157 SELRTRQQNIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAV 236 (422)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHcccccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 23456789999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 016097 210 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 210 ~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
..+++||++|+.+..+...++++|++++++|||+||+++|++||+++|++++..+.+++||+++|+||||+||++||+++
T Consensus 237 ~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~ 316 (422)
T PLN02890 237 EHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999988777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 016097 290 SASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 369 (395)
Q Consensus 290 ~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 369 (395)
++.+|||.++||++||+|+|++++++..+++..++.+...++++++.++++|.++|++++|++++++|.++|.+.|+.||
T Consensus 317 ~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp 396 (422)
T PLN02890 317 SASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLP 396 (422)
T ss_pred hhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998888888888888778899999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 370 ENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 370 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+++.+++.++|+.|..|++++++|+|
T Consensus 397 ~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 397 ETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred CCccccchHHHHHHHHHHHHHHhccC
Confidence 99866666789999999999999987
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=1.6e-70 Score=540.24 Aligned_cols=318 Identities=45% Similarity=0.699 Sum_probs=299.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
+.+..+.+++.+|++++.+.+.+.+|.+.++..|++..| |||+||.|++++++++|+.... .+.
T Consensus 5 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~~--------------~~~ 68 (322)
T TIGR02749 5 SLFAPVEDDLYLLTDNLKSLVGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQEL--------------TPR 68 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCccc--------------cHH
Confidence 356789999999999999999999999999999999988 9999999999999998753211 136
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 215 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~G 215 (395)
.+.+|+++||||+||||||||||+++.|||+||+|.+||++.||++||||+++|+..++..+++++++.+++++..+++|
T Consensus 69 ~~~~A~avEliH~asLiHDDiiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 148 (322)
T TIGR02749 69 HRRLAEITEMIHTASLVHDDVIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEG 148 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
|++|+.+..+...++++|++++.+|||+||+++|++||+++|++++.++.+++||.++|+||||+||++||+++++.+||
T Consensus 149 q~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK 228 (322)
T TIGR02749 149 EIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGK 228 (322)
T ss_pred HHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCC
Confidence 99999877666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 016097 296 GSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDED 375 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~ 375 (395)
|.++||++||+|+|++++++..+.+.+++.+...+++++++++++|.++|+++++++++++|.++|++.|+.||+++
T Consensus 229 ~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~--- 305 (322)
T TIGR02749 229 PAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP--- 305 (322)
T ss_pred ChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH---
Confidence 99999999999999999999888888888887788899999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhccC
Q 016097 376 VTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 376 ~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++.|..|++++++|++
T Consensus 306 ---~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 306 ---PREALKELVHFVLSRLY 322 (322)
T ss_pred ---HHHHHHHHHHHHHhcCC
Confidence 89999999999999974
No 3
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.7e-70 Score=552.66 Aligned_cols=322 Identities=42% Similarity=0.667 Sum_probs=300.9
Q ss_pred cCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 55 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 55 ~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
.+.+..+.++++.++++|++.+....|.+.+++.|++..| |||+||+|++++++++|..... ....+
T Consensus 95 ~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~~ 161 (416)
T PLN02857 95 SELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELTT 161 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------CcchH
Confidence 3467789999999999999999999999999999999988 9999999999999998631110 01123
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 214 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~ 214 (395)
+.+.+|+++||||+||||||||||++++|||+||+|.+||++.|||+||||+++|+..++..+++++++.+++++..+++
T Consensus 162 ~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~ 241 (416)
T PLN02857 162 EHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFAS 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccC
Q 016097 215 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 294 (395)
Q Consensus 215 Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~G 294 (395)
||+.|+.+..+...++++|++++++|||+||+.+|++||+++|++++..+.+++||++||+||||+||++||+++++.+|
T Consensus 242 Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~G 321 (416)
T PLN02857 242 GEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLG 321 (416)
T ss_pred hHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhC
Confidence 99999888777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 016097 295 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 374 (395)
Q Consensus 295 K~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 374 (395)
||.++||++||+|+|+++|++..+.+..++.+.+.+++++++++++|+++|++++|++++++|.++|++.|+.||.++
T Consensus 322 K~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~-- 399 (416)
T PLN02857 322 KPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGA-- 399 (416)
T ss_pred CCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH--
Confidence 999999999999999999999888889999888888899999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHHhccC
Q 016097 375 DVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 375 ~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++.|..|++++++|.+
T Consensus 400 ----~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 400 ----FRSSLEDMVDYNLERIY 416 (416)
T ss_pred ----HHHHHHHHHHHHHhccC
Confidence 88999999999999975
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=5e-70 Score=536.46 Aligned_cols=313 Identities=29% Similarity=0.503 Sum_probs=290.1
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
+.+..+.++++.|++.|++.+.+..|.+.+++.|++..| |||+||.|++++++++|.+. ++
T Consensus 4 ~~~~~~~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~-----------------~~ 64 (319)
T TIGR02748 4 DIYSFLQKDIDSIEKELEKAVQAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL-----------------DA 64 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------HH
Confidence 457889999999999999999888899999999999988 99999999999999876432 26
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 215 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~G 215 (395)
++.+|+++||||+||||||||+|++++|||+||+|.+||++.||++||||+++||+.++..++++++..+++++..+++|
T Consensus 65 ~~~~A~aiEliH~asLiHDDI~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 144 (319)
T TIGR02748 65 IKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRG 144 (319)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
|++|+.+..+...++++|++++++|||+||++||.+|++++|++++.++.+++||+++|+||||+||++||+++++.+||
T Consensus 145 q~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK 224 (319)
T TIGR02748 145 EIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGK 224 (319)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCC
Confidence 99999887777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhCc---hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 296 GSLSDIRHGIITAPILFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 372 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 372 (395)
|.++||++||+|+|++++++..+ .+..++.. .++++++.++++|.++|++++|+.++++|.++|.+.|+.||.++
T Consensus 225 ~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~--~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~ 302 (319)
T TIGR02748 225 PAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEE--TTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGR 302 (319)
T ss_pred ChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcC--CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999998543 22333322 25688999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHHhccC
Q 016097 373 DEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 373 ~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++.|..+++++++|++
T Consensus 303 ------~~~~L~~l~~~~~~R~~ 319 (319)
T TIGR02748 303 ------AKKPLQEIAKYIGKRKY 319 (319)
T ss_pred ------HHHHHHHHHHHHHhccC
Confidence 89999999999999975
No 5
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.5e-69 Score=534.01 Aligned_cols=318 Identities=40% Similarity=0.646 Sum_probs=298.2
Q ss_pred cCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 55 LDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 55 ~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
.+.+..+.+++..++++|++.+....|.+.++++|++..| |||+||.||+++++++|++... ..
T Consensus 5 ~~~~~~~~~~l~~i~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~~ 68 (323)
T CHL00151 5 SNLLTPIEEELLILEDNLKKLIGSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------KT 68 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------cH
Confidence 3567789999999999999999988899999999999988 9999999999999999864321 12
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 214 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~ 214 (395)
.++.+|+++||+|+||||||||||++++|||+||+|.+||++.||++||||+++||..++...++++++.+++++..+++
T Consensus 69 ~~~~~A~aiEllH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (323)
T CHL00151 69 SQQRLAEITEIIHTASLVHDDVIDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAE 148 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccC
Q 016097 215 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 294 (395)
Q Consensus 215 Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~G 294 (395)
||+.|..+..+...++++|++++.+|||+||++||.+||+++|++++..+.+++||.++|+||||+||++||+++++.+|
T Consensus 149 G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~G 228 (323)
T CHL00151 149 GEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLG 228 (323)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhC
Confidence 99999877666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 016097 295 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 374 (395)
Q Consensus 295 K~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 374 (395)
||.|+||++||+|+|++++++..+.+.+++.....++++++++++++.++|++++|++++++|.++|.+.|+.||.++
T Consensus 229 K~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~-- 306 (323)
T CHL00151 229 KPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS-- 306 (323)
T ss_pred CCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH--
Confidence 999999999999999999999888888888777778889999999999999999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHHhcc
Q 016097 375 DVTKSRRALLDLTHRVITRN 394 (395)
Q Consensus 375 ~~~~~~~~L~~l~~~~~~R~ 394 (395)
.++.|..+++++++|+
T Consensus 307 ----~~~~L~~l~~~~~~R~ 322 (323)
T CHL00151 307 ----AKDSLIEIANFIINRL 322 (323)
T ss_pred ----HHHHHHHHHHHHHhcc
Confidence 8999999999999996
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=4.3e-69 Score=530.04 Aligned_cols=315 Identities=32% Similarity=0.509 Sum_probs=290.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
+.+..+..+++.|++.|.+.+.+..|.+.++..|++..| |||+||.|++++++++|++. +.
T Consensus 5 ~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~ 65 (323)
T PRK10888 5 KINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NA 65 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HH
Confidence 356788999999999999999998899999999999988 99999999999999987642 25
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 215 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~G 215 (395)
.+.+|+++||||+||||||||+|++++|||+||+|.+||++.||++||||+++|++.++..++.+++..+++++..+++|
T Consensus 66 ~~~~A~avEllH~asLiHDDI~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 145 (323)
T PRK10888 66 HVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEG 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcccccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
|++|+.+..+...++++|++++.+|||+||++||.+||+++|++++..+.+++||+++|+||||+||++||+++++.+||
T Consensus 146 q~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK 225 (323)
T PRK10888 146 EVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGK 225 (323)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCC
Confidence 99999876666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhC-chHHHHHHccc---CCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 016097 296 GSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGF---EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 371 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~-~~~~~~l~~~~---~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 371 (395)
|+|+||++||+|+|++++++.. +..+..+.... ..+++++.+++++.++|+++++++++++|.++|.+.|+.||++
T Consensus 226 ~~g~Dl~~gk~Tlp~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~ 305 (323)
T PRK10888 226 NVGDDLNEGKPTLPLLHAMHHGTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDT 305 (323)
T ss_pred CchhhhhcCCchHHHHHHHHhCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999864 33344333222 2346789999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 016097 372 NDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 372 ~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+ .++.|..+++++++|++
T Consensus 306 ~------~~~~L~~l~~~~~~R~~ 323 (323)
T PRK10888 306 P------WREALIGLAHIAVQRDR 323 (323)
T ss_pred H------HHHHHHHHHHHHHhCcC
Confidence 8 89999999999999974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-68 Score=525.07 Aligned_cols=317 Identities=33% Similarity=0.516 Sum_probs=290.1
Q ss_pred chhHHHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 57 PFSLVADELSILAKRLRSMVV-AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 57 ~~~~i~~el~~v~~~l~~~i~-~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
++..+.++++.|++.|.+.+. +.++.+.+++.|++.+| |||+||++++++++++|.+... . .++
T Consensus 3 ~~~~~~~~~~~i~~~l~~~l~~~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~------------~-~~~ 67 (322)
T COG0142 3 LLALLLKRLARIEELLSELLSGSDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET------------G-GND 67 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc------------c-hhh
Confidence 456788999999999999998 78889999999999999 9999999999999999832211 0 236
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHLV 213 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~--~~v~~~~s~~~~~l~ 213 (395)
++.+|++|||||++|||||||||+|++|||+||+|.+||+..||++||+|+++||+++++.++ +.+...+++++..+|
T Consensus 68 ~~~~aaavEliH~~SLiHDDvmD~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (322)
T COG0142 68 ALDLAAAIELIHTASLIHDDLMDDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLC 147 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred HHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcccc
Q 016097 214 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 293 (395)
Q Consensus 214 ~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~ 293 (395)
.||++|+.+..+. +++++|++|+++|||+||+++|.+||+++|++++..+.+++||+++|+||||+||+|||+++++.+
T Consensus 148 ~GQ~lDl~~~~~~-~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~l 226 (322)
T COG0142 148 GGQALDLAFENKP-VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEEL 226 (322)
T ss_pred HhHHHHHHccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHh
Confidence 9999999998765 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 294 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 373 (395)
Q Consensus 294 GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 373 (395)
|||+|+||++||+|+|++++++..++....+........+++++++++.++|+++++...+..|.++|++.|+.+|+++
T Consensus 227 GK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~- 305 (322)
T COG0142 227 GKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE- 305 (322)
T ss_pred CCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch-
Confidence 9999999999999999999999864322133333332239999999999999999999999999999999999999777
Q ss_pred cchHHHHHHHHHHHHHHHhccC
Q 016097 374 EDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 374 ~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++.|..+++++++|++
T Consensus 306 -----~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 306 -----AKEALLELADFIIKRKY 322 (322)
T ss_pred -----HHHHHHHHHHHHHhccC
Confidence 99999999999999974
No 8
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.4e-64 Score=490.35 Aligned_cols=312 Identities=42% Similarity=0.597 Sum_probs=293.0
Q ss_pred hcCchhHHHHHHHHHHHHHHHhhccC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcC-CCCCCCCCCCchhhHhH
Q 016097 54 QLDPFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALN-VRVPEPLHDGVEDALAT 130 (395)
Q Consensus 54 ~~~~~~~i~~el~~v~~~l~~~i~~~--~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g-~~~~~~~~~~~~~~~~~ 130 (395)
..|....+..+++.+...+...++.. ++.+...++|.+..+ ||++||.+|+++|+++| +..
T Consensus 64 ~~d~~~~~~~~~~~ln~~l~~~~~~~~~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~~-------------- 127 (384)
T KOG0776|consen 64 LFDELSYMARKARSLNGALHYAVPLANEPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGDE-------------- 127 (384)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHhc--ccccCchhhhhHHHhcccccc--------------
Confidence 34777788899999999999888866 447888888999988 99999999999999998 432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 016097 131 ELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATV 208 (395)
Q Consensus 131 ~~~~~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~ 208 (395)
..++.+|+++||||+|||||||| ||++++|||+||.|+.||+++|||+||||+++|+..++.+.|+.++++++++
T Consensus 128 ---~~q~~~A~i~EMIHtaSLIHDDv~~mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~a 204 (384)
T KOG0776|consen 128 ---SSQRSLAEIVEMIHTASLIHDDVPCMDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASA 204 (384)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCcccccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 26899999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccC---CC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 209 VEHLVTGETMQMTTSS---DQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 209 ~~~l~~Gq~~dl~~~~---~~-~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
+.++++|++++..... +. +..+++|..++.+|||+|++.+|++|++++|+++++++.+++||+++|++||+.||++
T Consensus 205 I~dLv~ge~~~~~~~~~~~d~~~~~~e~~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDil 284 (384)
T KOG0776|consen 205 IADLVRGEFTQGLVAGEGLDLDDVGLEYLEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDIL 284 (384)
T ss_pred HHHHHHhhhhcccccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999988763 33 3488999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 016097 285 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 364 (395)
Q Consensus 285 D~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 364 (395)
||+...+.+||++|.|+..|+.|+|+++++++.|++.+.+.+.+.++.+.++..+++. ++..|..++++|.++|++.
T Consensus 285 dftkss~elGK~ag~Dl~~g~lT~P~Lf~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~ 361 (384)
T KOG0776|consen 285 DFTKSSEELGKTAGKDLKAGKLTAPVLFALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEA 361 (384)
T ss_pred CcccchhhcCcchhhhhhhccccccchhhhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887 8999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 016097 365 IDSLPENNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 365 L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
|+.||+++ +|++|.+|+..+++|
T Consensus 362 l~~~p~s~------ar~aL~~l~~~~~~r 384 (384)
T KOG0776|consen 362 LQSLPRSE------ARSALENLVLAVLTR 384 (384)
T ss_pred HhCCCCch------HHHHHHHHHHHHhcC
Confidence 99999999 999999999999987
No 9
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=6.2e-62 Score=474.27 Aligned_cols=279 Identities=27% Similarity=0.402 Sum_probs=248.2
Q ss_pred hHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 59 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 59 ~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
..+...++.+++.|.+.+... ++.+.+++.|++..| |||+||.|++++++++|.+. +.
T Consensus 5 ~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~ 65 (299)
T PRK10581 5 QQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST-----------------NT 65 (299)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH-----------------HH
Confidence 456778888889998887642 567999999999988 99999999999999997632 25
Q ss_pred HHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--------TEVVTLL 205 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~--------~~v~~~~ 205 (395)
...+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||++.||..++.... .+++..+
T Consensus 66 ~~~~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (299)
T PRK10581 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISEL 145 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHH
Confidence 778999999999999999999 999999999999999999999999999999999999987542 1345555
Q ss_pred HHH--HHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhhhhhh
Q 016097 206 ATV--VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLGLAYQLIDD 282 (395)
Q Consensus 206 s~~--~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~-~~~~~l~~~G~~lG~afQI~DD 282 (395)
+.+ +..++.||++|+.+... ..+.++|++|+++|||+||++||.+|++++|.++ +..+.+++||.++|+||||+||
T Consensus 146 ~~~~~~~~l~~GQ~ld~~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DD 224 (299)
T PRK10581 146 ASASGIAGMCGGQALDLEAEGK-QVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDD 224 (299)
T ss_pred HHhcccchhhHhhHHHHhccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 56899999999988654 6789999999999999999999999999999864 5789999999999999999999
Q ss_pred hhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 016097 283 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 362 (395)
Q Consensus 283 ~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~ 362 (395)
++|++++++.+|||.|+|+++||+|+|+++++ +++++.+++|.++|.
T Consensus 225 ilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~---------------------------------e~a~~~a~~~~~~A~ 271 (299)
T PRK10581 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDAR 271 (299)
T ss_pred HccccCChHHHCCCcchhhhcCCCCHHHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999954 578889999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 363 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 363 ~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+.|+.+|.++. .++.|..|++++++|+|
T Consensus 272 ~~l~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 272 QSLDQLAAQSL-----DTSALEALANYIIQRDK 299 (299)
T ss_pred HHHHhCcCCch-----hHHHHHHHHHHHHhccC
Confidence 99999998771 37889999999999986
No 10
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=4.5e-57 Score=432.81 Aligned_cols=254 Identities=39% Similarity=0.575 Sum_probs=239.0
Q ss_pred chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 80 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 159 (395)
Q Consensus 80 ~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~ 159 (395)
.+.+.+++.|.+..+ ||++||.+++++++++|++.. +.+..+|+++|++|+|+||||||+|+
T Consensus 3 ~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~~----------------~~~~~la~aiEllh~asLIhDDI~D~ 64 (259)
T cd00685 3 VELLREALRYLLLAG--GKRLRPLLVLLAARALGGPEL----------------EAALRLAAAIELLHTASLVHDDVMDN 64 (259)
T ss_pred chHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 467889999998878 999999999999999987431 26889999999999999999999999
Q ss_pred CCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHH
Q 016097 160 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 236 (395)
Q Consensus 160 s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~---~~v~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~ 236 (395)
|..|||+||+|.+||+..|||+||+|++.+++.++...+ .++++.+++++..++.||++|+.+..+...++++|+++
T Consensus 65 s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~ 144 (259)
T cd00685 65 SDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLRI 144 (259)
T ss_pred CcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999998877 78999999999999999999999877667899999999
Q ss_pred HHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhh
Q 016097 237 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 316 (395)
Q Consensus 237 ~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~ 316 (395)
+.+|||+||+++|.+|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 145 ~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l-- 222 (259)
T cd00685 145 IRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL-- 222 (259)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 016097 317 FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
++.++.|.++|+..|+.+|.+. .++.|..+++++++|
T Consensus 223 ----------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 ----------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6889999999999999999887 788999999999887
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=6.4e-56 Score=425.08 Aligned_cols=249 Identities=33% Similarity=0.545 Sum_probs=215.0
Q ss_pred HHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 016097 85 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 164 (395)
Q Consensus 85 ~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RR 164 (395)
+++.|++..| |||+||.|++++++++|++ .+.+..+|+++||||+||||||||+|++++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 4566777778 9999999999999999852 23789999999999999999999999999999
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHHHHHHcCC----CHHH---HHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHH
Q 016097 165 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NTEV---VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 237 (395)
Q Consensus 165 G~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~----~~~v---~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~ 237 (395)
|+||+|.+||++.||++||||++.|+..++... +..+ ...+...+.....||..|+.+... ..++++|++++
T Consensus 64 G~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i~ 142 (260)
T PF00348_consen 64 GKPTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEII 142 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHHH
T ss_pred CCccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHHH
Confidence 999999999999999999999999999999876 2333 344444555555667777766544 78999999999
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhC
Q 016097 238 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 317 (395)
Q Consensus 238 ~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~ 317 (395)
++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+||+.++||++||+|||+++++++.
T Consensus 143 ~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~ 222 (260)
T PF00348_consen 143 RLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERA 222 (260)
T ss_dssp HHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c-hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHH
Q 016097 318 P-QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 354 (395)
Q Consensus 318 ~-~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a 354 (395)
+ ..++++... ....+.+.+.+.+..++.++++++.+
T Consensus 223 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 223 REELRELLQEA-YGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHhhc
Confidence 5 455555543 34446778888888888898887765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=4.8e-43 Score=330.08 Aligned_cols=235 Identities=40% Similarity=0.603 Sum_probs=213.6
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc-cChhHH
Q 016097 100 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKLA 178 (395)
Q Consensus 100 ~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~-~G~~~A 178 (395)
+||.+++++++++|++. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||+..|
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a 63 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA 63 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH
Confidence 59999999999998642 268899999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCC
Q 016097 179 VLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 258 (395)
Q Consensus 179 Il~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~ 258 (395)
+++||++++.++..++.....++.+.+++.+..+++||.+|+.+..+...++++|++++++|||++|+.+|.+++++++.
T Consensus 64 i~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~ 143 (236)
T cd00867 64 ILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA 143 (236)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc
Confidence 99999999999999998878889999999999999999999988765568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHH
Q 016097 259 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIAL 338 (395)
Q Consensus 259 ~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~ 338 (395)
+++..+.+.+||.++|+||||.||++|++++.+.+|| .++||++||+|+|++++
T Consensus 144 ~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------- 197 (236)
T cd00867 144 DDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------- 197 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999 99999999999999996
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 016097 339 EYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 339 ~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
.+.+.++.+++.+.+..+++..+ ..+..+..++.++.+|
T Consensus 198 ------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 ------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 56667777778888877766542 1567788888888765
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=281.42 Aligned_cols=269 Identities=21% Similarity=0.290 Sum_probs=238.9
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 81 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 160 (395)
Q Consensus 81 ~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s 160 (395)
..+.++-.|++..+ ||.+|.-|.+...+.+.-+. ++...+..++||+|++||+.|||.|++
T Consensus 21 ~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P~-----------------dkLaii~~ivemLHNsSLLIDDIEDNs 81 (322)
T KOG0777|consen 21 SILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLPK-----------------DKLAIISQIVEMLHNSSLLIDDIEDNS 81 (322)
T ss_pred HHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHhccceeeccccccc
Confidence 35677889999877 99999999999999987542 266788999999999999999999999
Q ss_pred CCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCHHHHHHHHHh
Q 016097 161 DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYY 239 (395)
Q Consensus 161 ~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~-~~s~~~Y~~~~~~ 239 (395)
..|||.|++|..||+.-.|++++|++.+|.+.+..+..|+.+.+|.+-+-+++.||.+|+.|.... .++.++|..|+-.
T Consensus 82 ~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~~ 161 (322)
T KOG0777|consen 82 PLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVMN 161 (322)
T ss_pred hhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998665 4689999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCc-
Q 016097 240 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP- 318 (395)
Q Consensus 240 KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~- 318 (395)
|||.||.++.++.-.++...++ +..+-.-+|+.|||+|||+++..-+....|..+.||.|||.+.|+++|+...+
T Consensus 162 KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~q 237 (322)
T KOG0777|consen 162 KTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKGQ 237 (322)
T ss_pred hcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCCc
Confidence 9999999999999888865554 44566789999999999999987777778999999999999999999997654
Q ss_pred --hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 319 --QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 372 (395)
Q Consensus 319 --~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 372 (395)
+...++.....+-+-...++.++++.|.++|++....+...+|...++....++
T Consensus 238 ~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 238 TEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred hHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345555555444455568999999999999999999999999999999998888
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=280.30 Aligned_cols=298 Identities=19% Similarity=0.147 Sum_probs=248.5
Q ss_pred chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 80 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 159 (395)
Q Consensus 80 ~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~ 159 (395)
.+.+.....|+.. | ||..|...++.+.+++.++.. .+++....+..++|++|+++++.||-|||||+
T Consensus 37 ~~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~----------l~~~~~~~a~~lGw~vElLQaffLiaDDIMDn 103 (347)
T KOG0711|consen 37 TEWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRK----------LDEEELQLALILGWCVELLQAFFLVADDIMDN 103 (347)
T ss_pred HHHHHHHHhccCc-c--cccccchhHHHHHHHhcCccC----------CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3567788888864 7 999999999999999976433 12355667889999999999999999999999
Q ss_pred CCCCCCCCCcccccChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCHH
Q 016097 160 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMD 231 (395)
Q Consensus 160 s~~RRG~pt~~~~~G~~-~AIl~GD~Lla~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Gq~~dl~~~~--~~~~s~~ 231 (395)
|.+|||+|||+.+-|+. .||+-+-+|-+.-..+|... ...++++.|.++....+.|++++..... -...|++
T Consensus 104 S~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~ 183 (347)
T KOG0711|consen 104 SKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLE 183 (347)
T ss_pred ccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHH
Confidence 99999999999999994 58887766665544555532 1357889999999999999665543321 1246899
Q ss_pred HHHHHHHhhHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHH
Q 016097 232 YYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 309 (395)
Q Consensus 232 ~Y~~~~~~KTa~L-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlP 309 (395)
.|..|+.+|||.+ |.+|.++|.+++| ...+.......+-..+|..||++||+||++||++.+|| .|+||.++|+||.
T Consensus 184 ~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWl 262 (347)
T KOG0711|consen 184 KYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWL 262 (347)
T ss_pred HHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeee
Confidence 9999999999999 9999999999998 45567778899999999999999999999999999999 5999999999999
Q ss_pred HHHHhhhC-chHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 016097 310 ILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 386 (395)
Q Consensus 310 vl~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l 386 (395)
+.+|++.. +++.+++...+. +++.+..+..+..+.+.-+.-.+.-........+.|..++++.. +.+..+..+
T Consensus 263 v~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~----~~~~v~t~f 338 (347)
T KOG0711|consen 263 VVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTG----VKVKVGTSF 338 (347)
T ss_pred hHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCc----chhhhHHHH
Confidence 99999985 678888877766 56788999999999988888888888888888899988877663 266777789
Q ss_pred HHHHHhccC
Q 016097 387 THRVITRNK 395 (395)
Q Consensus 387 ~~~~~~R~~ 395 (395)
++.+.+|+|
T Consensus 339 l~kiykr~k 347 (347)
T KOG0711|consen 339 LNKIYKRSK 347 (347)
T ss_pred HHHHHhhcC
Confidence 999999975
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.92 E-value=4.5e-23 Score=190.27 Aligned_cols=226 Identities=31% Similarity=0.437 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc---cChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 213 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~---~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~ 213 (395)
..++.++|.+|+++++||||+|++..|++.|+++.. +|...+++.|+.++..++..+.....+.+...+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999998 99999999999999999999988777888999999999999
Q ss_pred HHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcccc
Q 016097 214 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 293 (395)
Q Consensus 214 ~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~ 293 (395)
.||..|+.+..+...+.++|+.+++.|||.++...|..++...+.+....+.+..+|.++|++||+.||+.||..+.+..
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999999876556899999999999999999999999998888777788899999999999999999999998876431
Q ss_pred CCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 294 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 373 (395)
Q Consensus 294 GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 373 (395)
+|+.|+|.+++.+........ ..++.++.++.+...+..+.+++.+.+..+.....
T Consensus 173 ---------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 173 ---------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred ---------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 589999999988754221111 16778899999999999999999999988876541
Q ss_pred cchHHHHHHHHHHHHHH
Q 016097 374 EDVTKSRRALLDLTHRV 390 (395)
Q Consensus 374 ~~~~~~~~~L~~l~~~~ 390 (395)
.....+...+..+
T Consensus 229 ----~~~~~~~~~~~~~ 241 (243)
T cd00385 229 ----DVPRALLALALNL 241 (243)
T ss_pred ----HHHHHHHHHHHHH
Confidence 1344455544443
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.86 E-value=0.00048 Score=64.06 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 214 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~ 214 (395)
+....+.++-++|+|..+||.|-. +..+.+...-. -...||+|||.-++.+.+|+..++..+++.+++++..+.+
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~----RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiNE 108 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSKE----RQLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEINE 108 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHh----hhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999976 33322222211 2569999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHH-HhhHHHHHH
Q 016097 215 GETMQMTTSSDQRCSMDYYMQKT-YYKTASLIS 246 (395)
Q Consensus 215 Gq~~dl~~~~~~~~s~~~Y~~~~-~~KTa~L~~ 246 (395)
....=-... ..+.++|++.+ .-+|+-+..
T Consensus 109 ~K~~ly~~~---~~~~e~~~~~~~~ies~l~~~ 138 (212)
T PF07307_consen 109 LKMSLYQKK---KETAEEYLESVVTIESALFQS 138 (212)
T ss_pred HHHHHHHhh---hCCHHHHHHHHHHHHHHHHHH
Confidence 987643332 24778877644 344444333
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.66 E-value=0.06 Score=51.53 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 205 LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 205 ~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
-.+.+..+++|..+|+.... ..|.+++..-+++-+|++..+.+.+... ..+. .....++.++|.|+|+.|=+.
T Consensus 89 ~~~~l~~li~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~--~~~~---~~~~~~a~~lG~alql~nilR 161 (267)
T PF00494_consen 89 PREPLLELIDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGA--HDPD---EAARDAARALGRALQLTNILR 161 (267)
T ss_dssp HHHHHHHHHHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHS--STSH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhcc--ccch---hhHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999988643 4589999998999999877766555432 1222 456778899999999999888
Q ss_pred cccCCccccCCCccch-hhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 016097 285 DFTGTSASLGKGSLSD-IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 363 (395)
Q Consensus 285 D~~g~~~~~GK~~g~D-l~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~ 363 (395)
|+ +.| ++.|++-+|.=..-+..=...+++... ..+..+..+ +......++.+.++|..
T Consensus 162 d~-----------~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~-~~~~~~~~~---------~~~~~~~A~~~l~~a~~ 220 (267)
T PF00494_consen 162 DI-----------PEDALRRGRIYLPLDDLRRFGVTPEDLLAGR-PRSERLRAL---------IRELAARARAHLDEARA 220 (267)
T ss_dssp TH-----------HHH-HHTT---S-HHHHHHTTSSHHHHHHHG--GGHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred Hh-----------HHHHHhcccccCCchhHHHcCCCHHHHHhcc-cCCHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 86 568 788999998766433221122222222 111113322 24556889999999999
Q ss_pred HhccCCCCC
Q 016097 364 AIDSLPENN 372 (395)
Q Consensus 364 ~L~~lp~~~ 372 (395)
.+..+|+..
T Consensus 221 ~~~~l~~~~ 229 (267)
T PF00494_consen 221 GLSALPPPR 229 (267)
T ss_dssp GGGGS--TT
T ss_pred HHHHcCCHh
Confidence 999996655
No 18
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.08 E-value=0.1 Score=52.21 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 016097 199 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 278 (395)
Q Consensus 199 ~~v~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQ 278 (395)
+.....+.+.+..|..|..+++........|.++|..-+++=-|.-=.+.+.+-+. +|...+......+++..+|+|+|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHH
Confidence 34667777888899999998876542112688888887776655543343343322 23222212234678999999999
Q ss_pred hhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHH
Q 016097 279 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 358 (395)
Q Consensus 279 I~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 358 (395)
+.|=+.|+ +.|+.+|++=||-=..-+......++. .++.-++.... ++.-...|..|.
T Consensus 179 lTNIlRDv-----------~ED~~~GR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~~------l~~lv~~A~~~~ 236 (336)
T TIGR01559 179 KTNIIRDY-----------LEDINEGRMFWPREIWSKYAKKLGDFK-----KPENSDKALQC------LNELVTNALHHA 236 (336)
T ss_pred HHHHHHHH-----------HhHHhCCCCCCCHHHHHHcCCCHHHhc-----CccccHHHHHH------HHHHHHHHHHHH
Confidence 99998887 457788999888543222111122211 22222333322 344557888999
Q ss_pred HHHHHHhccCCCCC
Q 016097 359 NLAAAAIDSLPENN 372 (395)
Q Consensus 359 ~~A~~~L~~lp~~~ 372 (395)
+.|.+.+..+++..
T Consensus 237 ~~al~yl~~l~~~~ 250 (336)
T TIGR01559 237 TDCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999997655
No 19
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.91 E-value=0.3 Score=46.95 Aligned_cols=135 Identities=18% Similarity=0.113 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 016097 207 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286 (395)
Q Consensus 207 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~ 286 (395)
..+..+++|..+|+... .-.|++++..-+++-.|++..+.+.+ ++..++ .....+.++|.|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 45688889999998754 34688998888888877777666554 333332 2467789999999999988887
Q ss_pred cCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 016097 287 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 366 (395)
Q Consensus 287 ~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 366 (395)
+.|+..|++.+|.=..-+..-...++.. ... .+.+..+ +..-...++.|.++|...+.
T Consensus 156 -----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~-~~~-~~~~~~~---------~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 -----------GEDARRGRIYLPAEELQRFGVPAADILE-GRY-SPALAAL---------CRFQAERARAHYAEADALLP 213 (266)
T ss_pred -----------HHHHhCCCeecCHHHHHHcCCCHHHhcC-CCC-CHHHHHH---------HHHHHHHHHHHHHHHHHhhh
Confidence 4678889999987543322211122221 111 1222222 23444678889999999888
Q ss_pred cCCCCC
Q 016097 367 SLPENN 372 (395)
Q Consensus 367 ~lp~~~ 372 (395)
.+|...
T Consensus 214 ~~p~~~ 219 (266)
T TIGR03465 214 ACDRRA 219 (266)
T ss_pred hCCHhh
Confidence 888543
No 20
>PLN02632 phytoene synthase
Probab=95.87 E-value=0.24 Score=49.43 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 207 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 207 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~--~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
..+.++++|..+|+... .-.|++++..-+++--|.+..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.
T Consensus 140 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILR 214 (334)
T PLN02632 140 QPFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILR 214 (334)
T ss_pred HHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999998753 23578888888888777776665554 33222 2223456778999999999999888
Q ss_pred cccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 016097 285 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 364 (395)
Q Consensus 285 D~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 364 (395)
|+ +.|+..|++-+|.=..-+..=...+++... .+ +.+.. + +..-...++.|.++|...
T Consensus 215 Dv-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~~-~~-~~~~~---l------~~~~~~~Ar~~~~~a~~~ 272 (334)
T PLN02632 215 DV-----------GEDARRGRVYLPQDELAQFGLTDEDIFAGK-VT-DKWRA---F------MKFQIKRARMYFAEAEEG 272 (334)
T ss_pred HH-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcCC-CC-HHHHH---H------HHHHHHHHHHHHHHHHHh
Confidence 87 568888999988644322211112222211 11 12222 2 233336789999999999
Q ss_pred hccCCCCC
Q 016097 365 IDSLPENN 372 (395)
Q Consensus 365 L~~lp~~~ 372 (395)
+..+|...
T Consensus 273 l~~lp~~~ 280 (334)
T PLN02632 273 VSELDPAS 280 (334)
T ss_pred HhhCCHHh
Confidence 99998654
No 21
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=95.58 E-value=0.35 Score=46.42 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 016097 207 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286 (395)
Q Consensus 207 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~ 286 (395)
+.+..+++|..+|+... .-.+++++..-+++-.|+...+.+.+ ++.... +....++.++|.|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999998853 34578888888888777765555443 332122 23557899999999999988887
Q ss_pred cCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 016097 287 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 366 (395)
Q Consensus 287 ~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 366 (395)
+.|+..|++.+|.=..-+..-...+++. .. ..+.+..+ +......++.|...|...+.
T Consensus 165 -----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~-~~-~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 -----------GEDARRGRIYLPREELARFGVTLEDLLA-PE-NSPAFRAL---------LRRLIARARAHYREALAGLA 222 (265)
T ss_pred -----------HHHHccCCCcCCHHHHHHcCCCHHHHcC-CC-CCHHHHHH---------HHHHHHHHHHHHHHHHHhHH
Confidence 4677889999887553332211222221 11 12222222 34445779999999999999
Q ss_pred cCCCCC
Q 016097 367 SLPENN 372 (395)
Q Consensus 367 ~lp~~~ 372 (395)
.+|...
T Consensus 223 ~lp~~~ 228 (265)
T cd00683 223 ALPRRS 228 (265)
T ss_pred hCCHhh
Confidence 999543
No 22
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.39 E-value=0.42 Score=46.02 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 016097 207 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286 (395)
Q Consensus 207 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~ 286 (395)
+.+..+++|..+|+... .-.|.+++..-+++-.|++..+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 86 ~~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl 156 (266)
T TIGR03464 86 EPFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV 156 (266)
T ss_pred HHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh
Confidence 35677888999888754 24588888888888777776665543 3333333 236788999999999988776
Q ss_pred cCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 016097 287 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 366 (395)
Q Consensus 287 ~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 366 (395)
+.|+..|++.+|.=..-+..=...+++. .. ....+..+ +......++.|.++|...+.
T Consensus 157 -----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~-~~-~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~ 214 (266)
T TIGR03464 157 -----------GVDYRKGRVYLPRDDLARFGVSEEDLAA-GR-ATPALREL---------MAFEVSRTRALLDRGAPLAA 214 (266)
T ss_pred -----------HHHHhcCCccCCHHHHHHcCCCHHHHhc-CC-CCHHHHHH---------HHHHHHHHHHHHHHHHHhHH
Confidence 4677889999886443222111122222 11 11222222 34445778999999999999
Q ss_pred cCCCCC
Q 016097 367 SLPENN 372 (395)
Q Consensus 367 ~lp~~~ 372 (395)
.+|...
T Consensus 215 ~lp~~~ 220 (266)
T TIGR03464 215 RVDGRL 220 (266)
T ss_pred hCCHhh
Confidence 998543
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=91.58 E-value=5.6 Score=38.54 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCHHHHH--HHHHHHHH
Q 016097 198 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKN 272 (395)
Q Consensus 198 ~~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag--~~~~~~~--~l~~~G~~ 272 (395)
.+.....|.+.+...+.|...+..+.. ...++.++|+++=..-.|..+..+ ++-...| .++.... .+..+-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~--l~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLG--LSEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHH--HHHHhcCCCCCHHHHhChHHHHHHHH
Confidence 467778888899999999998876543 234799999976444445443222 1212223 3444333 36777888
Q ss_pred HHHHhhhhhhhhcccCC
Q 016097 273 LGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 273 lG~afQI~DD~lD~~g~ 289 (395)
.+...-+.||+..|-.+
T Consensus 205 ~~~~~~l~NDl~S~~KE 221 (303)
T cd00687 205 ASDAIALVNDIYSYEKE 221 (303)
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 88889999999998544
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=89.57 E-value=20 Score=35.09 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 016097 206 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 285 (395)
Q Consensus 206 s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD 285 (395)
...+.++..|..+|+....- .+++++..-+++--|..- +.+..+++-.. ..........+|.|+|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y--~~~~eL~~Yc~~vAg~vG---~l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY--LDFEELEEYCYGVAGAVG---LLLARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCHHHHHHHHHHhHHHHH---HHHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999876532 345555554444433322 22334444322 22334445559999999998888
Q ss_pred ccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 016097 286 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 365 (395)
Q Consensus 286 ~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 365 (395)
+ +.|.+.|++=+|.=-..+-.....++.+... .+.+..+ +++-...+++|...|...+
T Consensus 174 v-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~--~~~~~~~---------~~~~~~~ar~~~~~a~~~~ 231 (288)
T COG1562 174 V-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRV--DDAFREL---------MRFEADRARDHLAEARRGL 231 (288)
T ss_pred h-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccc--hhHHHHH---------HHHHHHHHHHHHHHHHHhh
Confidence 6 5788889988884332222222222222111 1122222 3444578899999999999
Q ss_pred ccCCCCC
Q 016097 366 DSLPENN 372 (395)
Q Consensus 366 ~~lp~~~ 372 (395)
..||...
T Consensus 232 ~~lp~~~ 238 (288)
T COG1562 232 PALPGRA 238 (288)
T ss_pred hhCCccc
Confidence 9999876
No 25
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=88.29 E-value=19 Score=34.58 Aligned_cols=158 Identities=16% Similarity=0.067 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC---CCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 212 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~---~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l 212 (395)
..-...++=++|.+..+..|+.|.+. .|..+|-...+...+.+...+=.+..-++-...-. ++...-. .+..+
T Consensus 39 ~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~---~~~~~ 114 (279)
T PRK12884 39 ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLV---VILVS 114 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH---HHHHH
Confidence 33445566799999999999977543 36667777667777778777666555554322222 2221111 01111
Q ss_pred HHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccc
Q 016097 213 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 292 (395)
Q Consensus 213 ~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~ 292 (395)
..+=..-...+. ..-..+.. .|..++.+...|+...+......=.+.-+..-..+.+++..|+.|..+
T Consensus 115 ~~~~~Ys~~lK~--~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~---- 182 (279)
T PRK12884 115 VLGILYNWKLKE--YGLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG---- 182 (279)
T ss_pred HHHHHHHHhhcc--ccchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh----
Confidence 111111111111 11111111 222334444445443333222222233344445567788888888754
Q ss_pred cCCCccchhhcCcccHHHHHHhhh
Q 016097 293 LGKGSLSDIRHGIITAPILFAMEE 316 (395)
Q Consensus 293 ~GK~~g~Dl~egk~TlPvl~Al~~ 316 (395)
|-+.|+.|+|+.+--+.
T Consensus 183 -------D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 183 -------DRLRGARTLAILYGEKI 199 (279)
T ss_pred -------HHHcCCeeechHhcHHH
Confidence 56789999999885543
No 26
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=83.67 E-value=31 Score=33.16 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCC---CCCCCCCCcccccChhHHHHHHHHHHHHHHHHHH
Q 016097 138 CIAEITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 194 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDIiD~s---~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~ 194 (395)
-+..+.=++|.++.+..|+.|.+ ..|+.+|-.......+.|...+=.+...++-...
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~ 101 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAF 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34445568899999999997744 3467888888888899998888777776664433
No 27
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=77.55 E-value=65 Score=30.41 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc-CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCH---HHHHHHHHHHHHH
Q 016097 200 EVVTLLATVVEHLVTGETMQMTTS-SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTA---EVAILAFDYGKNL 273 (395)
Q Consensus 200 ~v~~~~s~~~~~l~~Gq~~dl~~~-~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag--~~~---~~~~~l~~~G~~l 273 (395)
.....|.+.+...+.|...+..+. ....++.++|+.+-..-.|..+.+++.. ...| .++ .....+..+....
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~--~~~g~~l~~~~~~~~~~~~~l~~~~ 199 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSF--LGMGDILPEEAFEWLPSYPKLVRAS 199 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHH--HHcCCCCCHHHHHHhhhhHHHHHHH
Confidence 667778888889999988887664 2346799999987666555543322211 1122 343 3456677777888
Q ss_pred HHHhhhhhhhhcccCC
Q 016097 274 GLAYQLIDDVLDFTGT 289 (395)
Q Consensus 274 G~afQI~DD~lD~~g~ 289 (395)
+..-=+.||+..|-.+
T Consensus 200 ~~~~~l~NDl~S~~kE 215 (284)
T cd00868 200 STIGRLLNDIASYEKE 215 (284)
T ss_pred HHHHHHhccchHHHHH
Confidence 8888889999888543
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=75.18 E-value=81 Score=30.36 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCC---CCCCCcccccChhHHHHHHHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRACVA 192 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~s~~R---RG~pt~~~~~G~~~AIl~GD~Lla~a~~~ 192 (395)
.-...++=++|.+..+..|+.|.+..| +.+|-...+...+.|...+=.++..++-.
T Consensus 40 ~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l 98 (279)
T PRK09573 40 ILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLIL 98 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHH
Confidence 334455669999999999998865433 67888888889999999888777777643
No 29
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=64.25 E-value=1.2e+02 Score=28.02 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=74.1
Q ss_pred HHHHHHHhccCCCCCCCCCC--CC---CCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHH
Q 016097 145 MIHVASLLHDDVLDDADTRR--GI---GSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV--VTLLATVVEHLVTGET 217 (395)
Q Consensus 145 liH~AsLiHDDIiD~s~~RR--G~---pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v--~~~~s~~~~~l~~Gq~ 217 (395)
++|.+.-+.||+.|-+.-|. ++ |-.......+.+...+-.++..+.-..... ++.. +-.+.-.+. +..-.-
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~-~~~~~~~~~~~~~~~-~~Ys~~ 111 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLL-GPWFLLILLLGFLLG-LLYSPP 111 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHH-HHHhhh
Confidence 99999999999988776665 43 444556666666666665555554322222 2221 111112221 111100
Q ss_pred hhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCC
Q 016097 218 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 296 (395)
Q Consensus 218 ~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~-~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~ 296 (395)
..+... .-..+.. .|..+.....+|+...+.+ +...-.+.-+.--++.+....+|+.|+.+|
T Consensus 112 ~~lk~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D------- 174 (257)
T PF01040_consen 112 LRLKRR----PLWGELV------VALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGD------- 174 (257)
T ss_pred hhhcce----eccchhh------HHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------
Confidence 011110 0001110 1111223333344334433 223333344445667788888899998654
Q ss_pred ccchhhcCcccHHHHHHh
Q 016097 297 SLSDIRHGIITAPILFAM 314 (395)
Q Consensus 297 ~g~Dl~egk~TlPvl~Al 314 (395)
.+.|+.|+|+.+-.
T Consensus 175 ----~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 175 ----RKAGRRTLPVLLGE 188 (257)
T ss_pred ----HHcCCcchHHHHHH
Confidence 56789999998843
No 30
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=62.31 E-value=1.2e+02 Score=29.12 Aligned_cols=51 Identities=14% Similarity=-0.033 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCC---CCCCCCCcccccChhHHHHHHHHHHHHHH
Q 016097 140 AEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRAC 190 (395)
Q Consensus 140 A~avEliH~AsLiHDDIiD~s~---~RRG~pt~~~~~G~~~AIl~GD~Lla~a~ 190 (395)
..++=+.|.+..+..|+.|-+. .|+.+|-...+...+.|...+=.+..-++
T Consensus 43 ~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 43 FLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 3445566788999999977433 45667777777788888887766665554
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=57.82 E-value=1.8e+02 Score=28.01 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC----CCC-CCCCCcccccChhHHHHHHHHHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLDDA----DTR-RGIGSLNFVMGNKLAVLAGDFLLSRACVALA 194 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~s----~~R-RG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~ 194 (395)
.-+..++=++|.+..+..|+.|.+ ..| +.+|-..-+...+.|...+=.+...++-...
T Consensus 43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~ 105 (281)
T TIGR01474 43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 334455568899999999997743 233 4688888888889998888777766654433
No 32
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=57.64 E-value=2e+02 Score=28.33 Aligned_cols=51 Identities=8% Similarity=-0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCC---CCCCCcccccChhHHHHHHHHHHHHHHH
Q 016097 141 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRACV 191 (395)
Q Consensus 141 ~avEliH~AsLiHDDIiD~s~~R---RG~pt~~~~~G~~~AIl~GD~Lla~a~~ 191 (395)
.+.=++|.++.+..|+.|.+.-| +.+|...-+...+.+...+=.++..++-
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 125 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLA 125 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHH
Confidence 34557999999999999965544 5577777778888888887777666653
No 33
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=55.87 E-value=13 Score=29.47 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhh
Q 016097 259 TAEVAILAFDYGKNLGLAYQLIDDV 283 (395)
Q Consensus 259 ~~~~~~~l~~~G~~lG~afQI~DD~ 283 (395)
.+...+.+=+||..+|-.||++==+
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCil 38 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICIL 38 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999997433
No 34
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=54.10 E-value=1.8e+02 Score=27.83 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.0
Q ss_pred HHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhh
Q 016097 273 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 316 (395)
Q Consensus 273 lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~ 316 (395)
+-.+.++..|+.|..+| -+.|+.|+|+.+-.+.
T Consensus 173 ~~~~~~~~~d~~D~e~D-----------~~~G~~Tlpv~lG~~~ 205 (285)
T PRK12872 173 KSFIREIVFDIKDIEGD-----------RKSGLKTLPIVLGKER 205 (285)
T ss_pred HHHHHHHHHhcccchhH-----------HHcCCcccchhcchHH
Confidence 35678899999998655 4679999999997654
No 35
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=50.88 E-value=1.7e+02 Score=28.80 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 254 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 254 ~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.+.|.+.+....+...-+-+=.|.-|.||+.|= +++|.|++|.-..|
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 344555554444555556667788999999773 35677777765554
No 36
>PLN00012 chlorophyll synthetase; Provisional
Probab=49.69 E-value=2.1e+02 Score=29.13 Aligned_cols=154 Identities=14% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC---CCCCCCCCCCcccccChhHHHH--HHHHHHHHHHHHHH------cCCCHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD---DADTRRGIGSLNFVMGNKLAVL--AGDFLLSRACVALA------SLKNTEVVTL 204 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD---~s~~RRG~pt~~~~~G~~~AIl--~GD~Lla~a~~~l~------~~~~~~v~~~ 204 (395)
...+..+.=+++.++-+..|+.| |....+.+|........+.++. .+-++.+.++..+. .....-++..
T Consensus 125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l 204 (375)
T PLN00012 125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL 204 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Q ss_pred HHHHHHHHHHH---HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhh
Q 016097 205 LATVVEHLVTG---ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLID 281 (395)
Q Consensus 205 ~s~~~~~l~~G---q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~D 281 (395)
++-.+.-+..+ -.....+-++... -+.+...+...|..+.|.-....-.+.-+---+++++-+.+
T Consensus 205 ~gi~l~~~YS~pPl~lKr~~~~G~v~l------------G~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivn 272 (375)
T PLN00012 205 GGSLLSYIYSAPPLKLKQNGWIGNYAL------------GASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVN 272 (375)
T ss_pred HHHHHhhhhcCCchhhhHhccHhHHHH------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 282 DVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 282 D~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
|+.|+.+|. +.|+.|+|+.+
T Consensus 273 d~~Die~Dr-----------~aG~~TLpV~~ 292 (375)
T PLN00012 273 DFKSIEGDR-----------ALGLQSLPVAF 292 (375)
T ss_pred hhcchhhHH-----------HcCCcccceee
No 37
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=47.94 E-value=1.6e+02 Score=27.50 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc---C-CCHHHHHHHHHHHHHHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLA---G-QTAEVAILAFDYGKNLGL 275 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~~-~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~la---g-~~~~~~~~l~~~G~~lG~ 275 (395)
+...|.+.+...+.|...+..+... ..+++++|+.+=..-+|..+...+..-++ . | .+++....-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 4455888888888888888776533 36789999987665555544443332111 2 1 112222221124555556
Q ss_pred Hhhhhhhhhccc
Q 016097 276 AYQLIDDVLDFT 287 (395)
Q Consensus 276 afQI~DD~lD~~ 287 (395)
.--+.||+..|-
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 666679999884
No 38
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=45.94 E-value=2.8e+02 Score=26.70 Aligned_cols=157 Identities=18% Similarity=0.093 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCC-----CCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRR-----GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 210 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RR-----G~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~ 210 (395)
..-+..++=+.-.+..+.+|+.|.+--|. .+|-..-+-..+.|....-.++..++-....++.....-.+.-.+-
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l 128 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVL 128 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455556678889999999988665554 5555556677777777766666655544333322111111222222
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 016097 211 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 211 ~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
.... - . .+...-..++. -|..+..+.-.|+...+. .....-.+.-+..-..++|.+..|+.|..+|
T Consensus 129 ~~~Y---~--~--~Kr~~~~~~~~------lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D 195 (289)
T COG0382 129 ALAY---P--F--LKRFTFLPQLV------LGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGD 195 (289)
T ss_pred HHHH---H--H--hhcCCchHHHH------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccch
Confidence 2222 1 1 11112223322 245566666666655543 2333445666677778899999999998765
Q ss_pred ccccCCCccchhhcCcccHHHHHHhhh
Q 016097 290 SASLGKGSLSDIRHGIITAPILFAMEE 316 (395)
Q Consensus 290 ~~~~GK~~g~Dl~egk~TlPvl~Al~~ 316 (395)
. +.|..|.|+.+-.+.
T Consensus 196 ~-----------~~G~~s~~~~~G~~~ 211 (289)
T COG0382 196 R-----------KAGLKSLPVLFGIKK 211 (289)
T ss_pred H-----------hcCCcchHHHhCchh
Confidence 4 668888888886554
No 39
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=45.32 E-value=3.2e+02 Score=27.07 Aligned_cols=47 Identities=30% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 254 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 254 ~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.+.|.+.+....+...-+-+=.|..|.||+.|= +++|.|++|+-..|
T Consensus 57 ~~~g~~~~~~~~~A~avEllH~asLiHDDI~D~------------s~~RRG~pt~~~~~ 103 (323)
T PRK10888 57 RAVGYQGNAHVTIAALIEFIHTATLLHDDVVDE------------SDMRRGKATANAAF 103 (323)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHcccccC------------CcccCCCCCHHHHh
Confidence 334544444444555556667789999999762 46788888876555
No 40
>PRK10581 geranyltranstransferase; Provisional
Probab=40.04 E-value=1.1e+02 Score=29.99 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC------------CCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcC
Q 016097 137 QCIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 196 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~------------s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~ 196 (395)
..+...-+.+=.|.=|.|||+|- .+.+.|++|+=..+|...|--.-+-++..|...|..+
T Consensus 206 ~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l 277 (299)
T PRK10581 206 PVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQL 277 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555667888899999999983 2345566666555555555544455555555555554
No 41
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=37.26 E-value=3.8e+02 Score=25.69 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCC----C-CCCCCCcccccChhHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLDDAD----T-RRGIGSLNFVMGNKLAVLAGDFLL 186 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~s~----~-RRG~pt~~~~~G~~~AIl~GD~Ll 186 (395)
.-+..+.=+++.+..+..|+.|.+. . ++.+|-.......+.|...+=.+.
T Consensus 39 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 93 (282)
T TIGR01475 39 ILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSL 93 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 3344555688999999999977433 2 356787777788888887775444
No 42
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=36.27 E-value=4e+02 Score=25.63 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhccCCCCCCC----CC-CCCCCcccccChhHHHHHHHHHHHHHHHH
Q 016097 141 EITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVA 192 (395)
Q Consensus 141 ~avEliH~AsLiHDDIiD~s~----~R-RG~pt~~~~~G~~~AIl~GD~Lla~a~~~ 192 (395)
.++=++|.+..+..|+.|.+- .| +.+|..--+-..+.|...|=.++..++-.
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l 105 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLL 105 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 344489999999999977443 33 57898888889999999888887777543
No 43
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=36.13 E-value=4.1e+02 Score=25.76 Aligned_cols=57 Identities=16% Similarity=-0.033 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC----CC-CCCCCcccccChhHHHHHHHHHHHHHHHHHH
Q 016097 138 CIAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVALA 194 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDIiD~s~----~R-RG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~ 194 (395)
-...++=++|.+..+..|+.|.+- .| +.+|-+..+-..+.|++.+=.++..++-...
T Consensus 50 l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~ 111 (290)
T PRK12870 50 IIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAF 111 (290)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344455688999999999977543 33 4788888888999998888777776654333
No 44
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=36.10 E-value=4.2e+02 Score=25.87 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=30.2
Q ss_pred HHHHHHhccCCCCCC----C-CC---------CCCCCcccccChhHHHHHHHHHHHHHHHH
Q 016097 146 IHVASLLHDDVLDDA----D-TR---------RGIGSLNFVMGNKLAVLAGDFLLSRACVA 192 (395)
Q Consensus 146 iH~AsLiHDDIiD~s----~-~R---------RG~pt~~~~~G~~~AIl~GD~Lla~a~~~ 192 (395)
.|.+ .+..|+.|.+ + .| +.+|....+...+.|...+=.+...++-.
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3555 4888875532 1 11 46787777888888888877776666544
No 45
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=35.51 E-value=2.8e+02 Score=26.76 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHcCC--CHHHH-HHHHHHHHHH-HHHhhhhhhhhcccC--Ccc-ccCCCccchh
Q 016097 229 SMDYYMQKTYYKTASLISNSCKAIALLAGQ--TAEVA-ILAFDYGKNL-GLAYQLIDDVLDFTG--TSA-SLGKGSLSDI 301 (395)
Q Consensus 229 s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~--~~~~~-~~l~~~G~~l-G~afQI~DD~lD~~g--~~~-~~GK~~g~Dl 301 (395)
+...|++..+-+|-..-..++.+|+.++.. ..... -.+.-++--+ =.+-.+.||+-|+.. |.+ ..|+ ..=+
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~--~r~l 79 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP--LRAI 79 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC--cccc
Confidence 466799999999988878888888877621 11111 1111222211 224578999999953 321 1121 2336
Q ss_pred hcCcccHHHH
Q 016097 302 RHGIITAPIL 311 (395)
Q Consensus 302 ~egk~TlPvl 311 (395)
..|+.|..-+
T Consensus 80 ~~G~is~~~~ 89 (293)
T PRK06080 80 GRGGISPKQV 89 (293)
T ss_pred cCCCCCHHHH
Confidence 6788776654
No 46
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=34.33 E-value=4.5e+02 Score=25.68 Aligned_cols=51 Identities=6% Similarity=-0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC---CCCCCCcccccChhHHHHHHHHHHHHHH
Q 016097 140 AEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRAC 190 (395)
Q Consensus 140 A~avEliH~AsLiHDDIiD~s~~---RRG~pt~~~~~G~~~AIl~GD~Lla~a~ 190 (395)
..+.=++|.++-++.|+.|.+.. .|.+|........+.+...+=.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 34557899999999999886532 3556777777788888877766655544
No 47
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=33.91 E-value=4.7e+02 Score=25.75 Aligned_cols=58 Identities=12% Similarity=-0.086 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC---CCC--CCCCCcccccChhHHHHHHHHHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLDDA---DTR--RGIGSLNFVMGNKLAVLAGDFLLSRACVALA 194 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD~s---~~R--RG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~ 194 (395)
.-...+.=++|.++.+..|+.|.+ ..+ +.+|....+...+.|+..+=.+...++-.+.
T Consensus 75 ~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~ 137 (314)
T PRK12878 75 FLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL 137 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 334455668999999999997743 234 3589888888999888777666655554443
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=33.73 E-value=4.8e+02 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhh
Q 016097 275 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 316 (395)
Q Consensus 275 ~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~ 316 (395)
.+..+.+|+.|..| |.++|+.|+|+.+-.+.
T Consensus 193 ~~~~iindirDiEG-----------Dr~~G~kTLPV~lG~~~ 223 (307)
T PRK13591 193 FINSCVYDFKDVKG-----------DTLAGIKTLPVSLGEQK 223 (307)
T ss_pred HHHHHHHHhhhhHh-----------HHHcCCeeEEEEECHHH
Confidence 34457899999865 45789999999886554
No 49
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=28.53 E-value=1.1e+02 Score=29.97 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 242 ASLISNSCKAIALLAGQTAEVAILAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 242 a~L~~~a~~~ga~lag~~~~~~~~l~~~G~~l-G~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
+.+|..+..+|....+..-...-.+--.+--+ ..++.+.+|+.|+.+|. ++|+.|+|+.+
T Consensus 140 ~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr-----------~~G~~Tlpv~l 200 (282)
T PRK13105 140 STHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADR-----------EAGIASIATVL 200 (282)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHH-----------HcCCccchHHh
No 50
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=27.99 E-value=5.2e+02 Score=24.39 Aligned_cols=51 Identities=29% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 250 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 250 ~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.+.+.+.|.+++....+...-.-+=.++-|.||+.|= +++|.|++|.-..|
T Consensus 22 ~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 22 LLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCccccccc
Confidence 3344445566666667777777888899999999772 35678888765555
No 51
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=27.85 E-value=5.2e+02 Score=24.34 Aligned_cols=44 Identities=34% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 257 GQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 257 g~~~-~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
|.++ +....+...-+-+=.|+-|.||+.|= +++|.|++|+-..|
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~ 78 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVF 78 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHh
Confidence 3343 44445555666677899999999662 23566777765544
No 52
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=27.26 E-value=7.8e+02 Score=26.20 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHH-HHHHHHHHcC--CCHHHHHHHH---HHH
Q 016097 198 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISN-SCKAIALLAG--QTAEVAILAF---DYG 270 (395)
Q Consensus 198 ~~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~-a~~~ga~lag--~~~~~~~~l~---~~G 270 (395)
....+..+.+.+..++.+-..+..|.. ...++.++|++.-..-+|..... .+..| .| .+++..+.+. ++-
T Consensus 354 ~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~---~g~~l~~e~~e~~~~~~~l~ 430 (542)
T cd00684 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG---MGDILTEEAFEWLESRPKLV 430 (542)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh---cCCCCCHHHHHHHhccHHHH
Confidence 456677788999999999999988864 34679999999866655554322 22222 22 4566555443 577
Q ss_pred HHHHHHhhhhhhhhcccCCccccCCCccchhhcCc-ccHHHHHHhh
Q 016097 271 KNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI-ITAPILFAME 315 (395)
Q Consensus 271 ~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk-~TlPvl~Al~ 315 (395)
...+....+.||+..+-.+. ..|. .+...+|..+
T Consensus 431 ~~~~~i~rL~NDi~S~~kE~-----------~rGdv~n~V~~ymke 465 (542)
T cd00684 431 RASSTIGRLMNDIATYEDEM-----------KRGDVASSIECYMKE 465 (542)
T ss_pred HHHHHHHHHhcChhhhHHHH-----------hcCCcccHHHHHHHh
Confidence 77788899999999885432 2344 4676666543
No 53
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=21.93 E-value=2.2e+02 Score=28.10 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHhh----hhhhhhcccCC
Q 016097 229 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG-LAYQ----LIDDVLDFTGT 289 (395)
Q Consensus 229 s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG-~afQ----I~DD~lD~~g~ 289 (395)
++..|++.++-||-..-..++-+|+.++.......+...-+..-+| +++| +.||+-||..+
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g 67 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKA 67 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4577999999999888778888888776211000111111222333 3345 58999999654
No 54
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=21.33 E-value=1.4e+02 Score=29.39 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCC-CCCCCCCCCCcccccChhHHHHHHHHHHHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 190 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD-~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~ 190 (395)
.-++...-+...+.++..|+.| ++|.+.|++|.-..+|.+.+....-+++..++
T Consensus 192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 3444445555666677888887 44567899999999999988877666655554
No 55
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=20.26 E-value=4.1e+02 Score=25.56 Aligned_cols=55 Identities=25% Similarity=0.223 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC-CCCCCCCCCCcccccChhHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 190 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD-~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~ 190 (395)
..-++..+-++-.+.++..|+.| +.|.+.|+.|.-.++|.+.+...--.++..++
T Consensus 170 ~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 170 VFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 45566667777777888899988 44567899999999999987766555555554
No 56
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=20.10 E-value=3.1e+02 Score=27.07 Aligned_cols=78 Identities=14% Similarity=-0.004 Sum_probs=48.8
Q ss_pred CCHHHHHHHH---HhhHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHH-----hhhhhhhhcccCCcccc
Q 016097 228 CSMDYYMQKT---YYKTASLISNSCKAIALLAGQT------AEVAILAFDYGKNLGLA-----YQLIDDVLDFTGTSASL 293 (395)
Q Consensus 228 ~s~~~Y~~~~---~~KTa~L~~~a~~~ga~lag~~------~~~~~~l~~~G~~lG~a-----fQI~DD~lD~~g~~~~~ 293 (395)
.+...|.+.+ +-||-.+.-.++..|..++... ..... -+-.-+|.. =.+.||+.|.--|.. .
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~-~ 103 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWH---LFLFFVGAIAMRGAGCTYNDIVDRDIDAK-V 103 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence 3678899999 8889999999999999887542 11111 111223333 378999999655532 2
Q ss_pred CCCccchhhcCcccHH
Q 016097 294 GKGSLSDIRHGIITAP 309 (395)
Q Consensus 294 GK~~g~Dl~egk~TlP 309 (395)
-++...=|-.|++|..
T Consensus 104 ~Rt~~RPl~sG~is~~ 119 (314)
T PRK12878 104 ARTRSRPLPSGQVSRK 119 (314)
T ss_pred CCCCCCCCCCCCcCHH
Confidence 2222334567887743
Done!