Query 016097
Match_columns 395
No_of_seqs 234 out of 1663
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 4.9E-73 1.7E-77 560.6 33.9 317 53-394 23-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 3.7E-72 1.3E-76 554.2 34.7 317 54-395 11-333 (341)
3 3apz_A Geranyl diphosphate syn 100.0 8.2E-73 2.8E-77 561.5 29.1 346 50-395 3-348 (348)
4 3rmg_A Octaprenyl-diphosphate 100.0 5.1E-72 1.8E-76 552.0 28.9 316 54-395 6-326 (334)
5 3pko_A Geranylgeranyl pyrophos 100.0 9.5E-72 3.3E-76 550.1 27.6 319 53-395 13-334 (334)
6 3lmd_A Geranylgeranyl pyrophos 100.0 3.4E-71 1.2E-75 549.6 28.3 314 56-395 35-352 (360)
7 3nf2_A Putative polyprenyl syn 100.0 1.2E-70 4.2E-75 545.1 29.7 313 58-395 6-344 (352)
8 1wy0_A Geranylgeranyl pyrophos 100.0 7E-71 2.4E-75 546.4 27.6 316 55-395 5-342 (342)
9 3aqb_B Component B of hexapren 100.0 4.5E-70 1.5E-74 537.0 28.3 314 56-395 5-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 1.5E-68 5.1E-73 531.6 30.7 309 59-395 8-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 1.8E-68 6.1E-73 526.7 25.8 307 61-395 5-330 (330)
12 1v4e_A Octoprenyl-diphosphate 100.0 4.7E-67 1.6E-71 509.3 24.2 282 60-372 8-289 (299)
13 3lk5_A Geranylgeranyl pyrophos 100.0 4.5E-66 1.6E-70 516.9 30.6 321 56-394 20-372 (380)
14 3tc1_A Octaprenyl pyrophosphat 100.0 5.6E-66 1.9E-70 504.6 27.2 298 65-391 6-307 (315)
15 2e8v_A Geranylgeranyl pyrophos 100.0 1.7E-66 5.8E-71 514.2 21.3 304 68-392 10-339 (340)
16 2q80_A Geranylgeranyl pyrophos 100.0 3.2E-66 1.1E-70 504.1 20.9 292 72-395 2-297 (301)
17 3uca_A Geranyltranstransferase 100.0 1.2E-64 4E-69 495.9 26.1 281 55-395 31-324 (324)
18 3ts7_A Geranyltranstransferase 100.0 5E-64 1.7E-68 491.4 26.7 279 56-395 8-302 (324)
19 1yhl_A Farnesyl pyrophosphate 100.0 5.6E-64 1.9E-68 500.5 26.8 299 81-395 34-362 (362)
20 4f62_A Geranyltranstransferase 100.0 1.5E-63 5E-68 486.8 29.0 278 57-395 5-295 (317)
21 2qis_A Farnesyl pyrophosphate 100.0 8.4E-64 2.9E-68 500.3 27.8 296 80-395 63-374 (374)
22 2h8o_A Geranyltranstransferase 100.0 5.1E-64 1.7E-68 494.1 25.2 277 58-395 40-335 (335)
23 1rtr_A Geranyltranstransferase 100.0 4.1E-64 1.4E-68 489.1 23.2 273 64-395 9-293 (301)
24 1rqj_A Geranyltranstransferase 100.0 4E-64 1.4E-68 489.1 22.6 280 58-395 4-299 (299)
25 3lsn_A Geranyltranstransferase 100.0 1.7E-63 5.7E-68 484.7 26.8 277 58-395 4-296 (304)
26 3p8r_A Geranyltranstransferase 100.0 1.7E-63 5.9E-68 484.5 25.7 276 59-395 11-302 (302)
27 3p8l_A Geranyltranstransferase 100.0 1.6E-63 5.6E-68 484.1 25.1 275 61-393 14-302 (302)
28 3dyh_A Farnesyl pyrophosphate 100.0 6.8E-64 2.3E-68 503.0 21.7 330 51-395 26-390 (390)
29 1uby_A FPS, farnesyl diphospha 100.0 9E-63 3.1E-67 491.8 27.9 295 81-395 57-367 (367)
30 2ihi_A Pyrophosphate synthase; 100.0 9.2E-63 3.2E-67 494.9 27.4 321 50-394 32-395 (395)
31 3mav_A Farnesyl pyrophosphate 100.0 3.2E-62 1.1E-66 492.8 29.7 291 82-393 67-394 (395)
32 2her_A Fragment, farnesyl pyro 100.0 6.6E-64 2.2E-68 498.0 16.5 314 48-393 22-354 (368)
33 3m0g_A Farnesyl diphosphate sy 100.0 8.1E-63 2.8E-67 478.4 22.8 273 59-395 5-289 (297)
34 3pde_A Farnesyl-diphosphate sy 100.0 1.3E-62 4.6E-67 478.5 23.5 279 58-395 9-300 (309)
35 3lom_A Geranyltranstransferase 100.0 1.5E-62 5.1E-67 479.5 23.8 276 58-394 10-302 (313)
36 3ipi_A Geranyltranstransferase 100.0 6.2E-62 2.1E-66 471.8 24.2 271 66-394 12-283 (295)
37 2ftz_A Geranyltranstransferase 100.0 9.6E-62 3.3E-66 468.1 25.3 265 65-393 15-284 (284)
38 3llw_A Geranyltranstransferase 100.0 3.3E-59 1.1E-63 455.5 26.2 273 68-394 18-304 (311)
39 2q58_A Fragment, farnesyl pyro 100.0 2.4E-59 8.1E-64 467.4 18.5 284 82-394 59-359 (368)
40 3npk_A Geranyltranstransferase 100.0 1.2E-58 4.2E-63 447.7 22.3 266 66-392 7-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 3.8E-58 1.3E-62 444.3 22.4 263 61-394 15-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 1.2E-57 4.2E-62 442.1 25.7 267 56-395 12-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 9.8E-54 3.3E-58 410.9 15.0 221 56-304 5-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 5.7E-49 1.9E-53 377.6 24.9 199 65-283 9-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 6.4E-48 2.2E-52 370.3 24.4 195 67-284 16-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.0 0.49 1.7E-05 44.9 18.4 132 209-371 106-237 (294)
47 3acx_A Dehydrosqualene synthas 94.6 0.76 2.6E-05 43.4 14.8 136 207-372 108-243 (293)
48 3vj8_A Squalene synthase; farn 94.3 0.43 1.5E-05 46.4 12.6 145 201-371 112-256 (343)
49 3aqb_A Component A of hexapren 82.1 2.6 8.8E-05 35.3 5.9 44 178-221 72-115 (147)
50 3kb9_A EPI-isozizaene synthase 80.1 45 0.0015 32.3 17.2 95 193-289 170-269 (382)
51 3v1v_A 2-MIB synthase, 2-methy 78.6 26 0.00089 34.8 13.2 96 191-289 246-346 (433)
52 3g4d_A (+)-delta-cadinene synt 69.3 60 0.002 33.4 13.4 88 199-289 365-459 (554)
53 3m00_A Aristolochene synthase; 64.1 71 0.0024 32.8 12.7 88 199-289 361-454 (550)
54 3n0f_A Isoprene synthase; terp 63.5 55 0.0019 33.6 11.8 88 201-289 365-457 (555)
55 1ps1_A Pentalenene synthase; a 51.3 1.5E+02 0.0052 27.4 19.0 99 191-289 125-227 (337)
56 2q80_A Geranylgeranyl pyrophos 47.7 1.7E+02 0.006 27.2 11.6 45 256-312 40-84 (301)
57 1di1_A Aristolochene synthase; 47.1 1.7E+02 0.0056 26.6 16.6 66 225-290 149-214 (300)
58 2ong_A 4S-limonene synthase; m 46.8 2.5E+02 0.0085 28.5 13.9 88 201-289 356-448 (543)
59 3rmg_A Octaprenyl-diphosphate 45.1 1.1E+02 0.0038 29.0 10.0 45 257-313 63-107 (334)
60 3mzv_A Decaprenyl diphosphate 43.1 1.6E+02 0.0056 28.0 10.8 52 249-312 61-112 (341)
61 3uca_A Geranyltranstransferase 41.4 37 0.0013 32.4 5.9 62 136-197 233-306 (324)
62 1n1b_A (+)-bornyl diphosphate 40.5 1.5E+02 0.0053 30.2 10.7 102 201-316 362-472 (549)
63 4f62_A Geranyltranstransferase 40.2 29 0.00098 33.1 4.8 62 136-197 204-277 (317)
64 3lsn_A Geranyltranstransferase 39.8 29 0.00098 32.8 4.7 79 137-215 206-298 (304)
65 4fp4_A Polyprenyl synthetase; 39.6 1.6E+02 0.0054 27.4 9.8 42 259-312 66-107 (285)
66 3bny_A Aristolochene synthase; 37.7 2.4E+02 0.0082 25.8 13.5 64 226-289 164-227 (320)
67 3m0g_A Farnesyl diphosphate sy 37.5 93 0.0032 29.1 7.9 60 138-197 200-271 (297)
68 3nf2_A Putative polyprenyl syn 36.6 1.1E+02 0.0037 29.4 8.4 50 251-312 64-113 (352)
69 1yyq_A Trichodiene synthase; t 36.5 3E+02 0.01 26.5 16.6 151 145-317 91-252 (374)
70 3sdr_A Alpha-bisabolene syntha 36.2 1.2E+02 0.0041 32.6 9.4 87 201-289 626-721 (817)
71 3p5p_A Taxadiene synthase; cla 34.5 1.5E+02 0.0051 31.6 9.7 87 201-289 567-659 (764)
72 3lmd_A Geranylgeranyl pyrophos 33.7 1.3E+02 0.0046 28.9 8.5 49 252-312 85-134 (360)
73 2ftz_A Geranyltranstransferase 32.4 2.9E+02 0.0099 25.5 10.4 46 255-312 60-107 (284)
74 3p8l_A Geranyltranstransferase 32.2 45 0.0015 31.4 4.7 61 136-196 208-280 (302)
75 3lom_A Geranyltranstransferase 30.9 77 0.0026 30.0 6.1 71 137-207 213-296 (313)
76 3p8r_A Geranyltranstransferase 30.7 42 0.0014 31.6 4.2 60 138-197 213-284 (302)
77 1rtr_A Geranyltranstransferase 30.1 38 0.0013 31.9 3.8 62 136-197 200-273 (301)
78 2h8o_A Geranyltranstransferase 29.9 51 0.0017 31.5 4.7 62 136-197 244-317 (335)
79 3ts7_A Geranyltranstransferase 29.8 65 0.0022 30.7 5.4 62 137-198 212-285 (324)
80 3aqb_B Component B of hexapren 28.5 1.6E+02 0.0054 27.7 8.0 49 252-312 55-103 (325)
81 1v4e_A Octoprenyl-diphosphate 28.1 2E+02 0.0069 26.7 8.5 40 261-312 61-100 (299)
82 2e8v_A Geranylgeranyl pyrophos 25.0 3.9E+02 0.013 25.2 10.1 46 255-312 54-99 (340)
83 4dhd_A Polyprenyl synthetase; 24.7 2.4E+02 0.0082 26.9 8.6 42 259-312 63-104 (358)
84 3pko_A Geranylgeranyl pyrophos 24.3 2.4E+02 0.008 26.7 8.3 43 258-312 73-115 (334)
85 3pde_A Farnesyl-diphosphate sy 20.2 1.1E+02 0.0037 28.9 4.9 59 137-195 208-278 (309)
86 3oyr_A Trans-isoprenyl diphosp 20.0 2.3E+02 0.0079 27.0 7.3 37 249-285 73-109 (345)
87 1wy0_A Geranylgeranyl pyrophos 20.0 2.7E+02 0.0093 26.2 7.8 45 256-312 61-105 (342)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=4.9e-73 Score=560.64 Aligned_cols=317 Identities=31% Similarity=0.433 Sum_probs=267.1
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 016097 53 EQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132 (395)
Q Consensus 53 ~~~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (395)
...+++..+.++++.|++.|++.+.+.+|.+.++++|++..| |||+||+|++++++++|++.+
T Consensus 23 ~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~--------------- 85 (345)
T 3oyr_A 23 SVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND--------------- 85 (345)
T ss_dssp CSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS---------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 345668899999999999999999999999999999999988 999999999999999987533
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 016097 133 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 212 (395)
Q Consensus 133 ~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l 212 (395)
.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++..++++++.+++++..+
T Consensus 86 --~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 163 (345)
T 3oyr_A 86 --HFQKLAAAVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVI 163 (345)
T ss_dssp --THHHHHHHHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccc
Q 016097 213 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 292 (395)
Q Consensus 213 ~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~ 292 (395)
+.||++|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++||+++++.
T Consensus 164 ~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~ 243 (345)
T 3oyr_A 164 AEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATET 243 (345)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999998777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhhcCcccHHHHHHhhhC-chHHHHHH----cccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 016097 293 LGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVE----QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 367 (395)
Q Consensus 293 ~GK~~g~Dl~egk~TlPvl~Al~~~-~~~~~~l~----~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 367 (395)
+|||+|+||++||+|||++++++.. +..++.+. +...+++++++++++++++|++++|++++++|.++|++.|+.
T Consensus 244 ~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~ 323 (345)
T 3oyr_A 244 LGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAM 323 (345)
T ss_dssp -------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 44444443 333467889999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhcc
Q 016097 368 LPENNDEDVTKSRRALLDLTHRVITRN 394 (395)
Q Consensus 368 lp~~~~~~~~~~~~~L~~l~~~~~~R~ 394 (395)
||+++ +++.|.+|++++++|+
T Consensus 324 lp~~~------~~~~L~~la~~~~~R~ 344 (345)
T 3oyr_A 324 FPAND------WREALEELADFAVSRR 344 (345)
T ss_dssp SCSSH------HHHHHHHHHHHHHHC-
T ss_pred CCCcH------HHHHHHHHHHHHHhcc
Confidence 99988 9999999999999996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=3.7e-72 Score=554.15 Aligned_cols=317 Identities=29% Similarity=0.495 Sum_probs=281.4
Q ss_pred hcCchhHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 016097 54 QLDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132 (395)
Q Consensus 54 ~~~~~~~i~~el~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (395)
..+++..+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++.+
T Consensus 11 ~~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~--------------- 73 (341)
T 3mzv_A 11 HDRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP--------------- 73 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 45567899999999999999999988 899999999999988 999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 016097 133 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 212 (395)
Q Consensus 133 ~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l 212 (395)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++.+++++++.+++++..+
T Consensus 74 --~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 151 (341)
T 3mzv_A 74 --FHVHLAATVEFIHTATLLHDDVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVI 151 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccc
Q 016097 213 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 292 (395)
Q Consensus 213 ~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~ 292 (395)
+.||++|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.
T Consensus 152 ~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~ 231 (341)
T 3mzv_A 152 AEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAE 231 (341)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 99999999998777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccchhhcCcccHHHHHHhhhCc-h----HHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 016097 293 LGKGSLSDIRHGIITAPILFAMEEFP-Q----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 367 (395)
Q Consensus 293 ~GK~~g~Dl~egk~TlPvl~Al~~~~-~----~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~ 367 (395)
+|||+|+||++||+|||++++++..+ . +..++.+...+++++++++++++++|++++|++++++|.++|++.|+.
T Consensus 232 ~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~ 311 (341)
T 3mzv_A 232 IGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAK 311 (341)
T ss_dssp ----CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999864 2 334444444567899999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 368 LPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 368 lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
||+++ +++.|..|++++++|+.
T Consensus 312 lp~~~------~~~~L~~la~~~~~r~~ 333 (341)
T 3mzv_A 312 LPDHP------LRQMLDDLADYVVERVR 333 (341)
T ss_dssp SCCCH------HHHHHHHHHHHHTGGGC
T ss_pred CCCCH------HHHHHHHHHHHHHhccc
Confidence 99988 99999999999999974
No 3
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=8.2e-73 Score=561.49 Aligned_cols=346 Identities=79% Similarity=1.145 Sum_probs=276.8
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 016097 50 DSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 129 (395)
Q Consensus 50 ~~~~~~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~ 129 (395)
.+....+++..+.+|++.|+++|++.+.+.+|.+.+++.|++..|.+|||+||.|++++++++|++.+++.+.+..+...
T Consensus 3 ~~~~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (348)
T 3apz_A 3 LVEEELDPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVT 82 (348)
T ss_dssp -----CCTTTTTHHHHHHHHHGGGGCCCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------C
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccc
Confidence 34556678889999999999999999999999999999999985545999999999999999986432110000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 016097 130 TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVV 209 (395)
Q Consensus 130 ~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~ 209 (395)
.++.++++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..++...++++++.+++++
T Consensus 83 ~~~~~~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~ 162 (348)
T 3apz_A 83 SELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAV 162 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23345688999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 016097 210 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 210 ~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
..++.||++|+.+..+...++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++||+++
T Consensus 163 ~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd 242 (348)
T 3apz_A 163 EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGT 242 (348)
T ss_dssp HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999887655689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 016097 290 SASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 369 (395)
Q Consensus 290 ~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 369 (395)
++.+|||+|+||++||+|||+++|++..+++++++.+.+.++++++++++++.++|+++++++++++|.++|.+.|+.||
T Consensus 243 ~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~ 322 (348)
T 3apz_A 243 SASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLP 322 (348)
T ss_dssp TTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999988899999888888889999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 370 ENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 370 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++.....+.++.|..|++++++|++
T Consensus 323 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 323 ETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHhCcC
Confidence 87521112268999999999999975
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-72 Score=551.97 Aligned_cols=316 Identities=28% Similarity=0.379 Sum_probs=273.0
Q ss_pred hcCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 016097 54 QLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 133 (395)
Q Consensus 54 ~~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~ 133 (395)
..+.+..|.++|+.|++.|++.+.+.+|.+.++++|++..| |||+||.|++++++++|++.
T Consensus 6 ~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~----------------- 66 (334)
T 3rmg_A 6 ISLIKTPIEAELEDFKALFDTPLSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT----------------- 66 (334)
T ss_dssp HHHHHGGGHHHHHHHHHHTC----CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------
Confidence 45567889999999999999999999999999999999888 99999999999999998642
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 016097 134 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 213 (395)
Q Consensus 134 ~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~ 213 (395)
+.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..++...++++++.+++++..++
T Consensus 67 ~~~~~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 146 (334)
T 3rmg_A 67 PATLHAAVSLELLHTASLVHDDVVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLA 146 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 26889999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcccc
Q 016097 214 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 293 (395)
Q Consensus 214 ~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~ 293 (395)
.||++|+.+..+...++++|++|+++|||+||+++|++||+++|++++..+.+++||.++|+||||+||++|++ +++.+
T Consensus 147 ~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~ 225 (334)
T 3rmg_A 147 EGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKI 225 (334)
T ss_dssp HHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-Chhhc
Confidence 99999999987777899999999999999999999999999999999999999999999999999999999999 57899
Q ss_pred CCCccchhhcCcccHHHHHHhhhC-c----hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 016097 294 GKGSLSDIRHGIITAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 368 (395)
Q Consensus 294 GK~~g~Dl~egk~TlPvl~Al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 368 (395)
|||+|+||++||+|||+++|++.. + .+.+++.+...++++++++++++.++|++++|++++++|.++|.+.|+.|
T Consensus 226 GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~l 305 (334)
T 3rmg_A 226 GKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAAL 305 (334)
T ss_dssp ---CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999874 2 45666666667889999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 369 PENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 369 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
|+++ +++.|..|++++++|++
T Consensus 306 p~~~------~~~~L~~l~~~~~~R~~ 326 (334)
T 3rmg_A 306 PDSN------ICLALRTYLDYVVAREK 326 (334)
T ss_dssp CCCH------HHHHHHHHHHHHHHCC-
T ss_pred CCcH------HHHHHHHHHHHHHhccc
Confidence 9888 99999999999999974
No 5
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=9.5e-72 Score=550.05 Aligned_cols=319 Identities=26% Similarity=0.431 Sum_probs=297.2
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 016097 53 EQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132 (395)
Q Consensus 53 ~~~~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (395)
..+++|+.|.+|++.|++.|++.+.+.+|.+.+++.|++..| |||+||.|++++++ +|++.+
T Consensus 13 ~~~~~~~~i~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~--------------- 74 (334)
T 3pko_A 13 QLWRQFPQVEPQLTALQDYLLRTVQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT--------------- 74 (334)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------
Confidence 356788999999999999999999999999999999999988 99999999999999 664111
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 016097 133 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEH 211 (395)
Q Consensus 133 ~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-~~v~~~~s~~~~~ 211 (395)
.+.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++...+ +++++.+++++..
T Consensus 75 ~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 154 (334)
T 3pko_A 75 PAQLQAGAAAIEILHVGTLIHDDVIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHR 154 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 136889999999999999999999999999999999999999999999999999999999998765 8999999999999
Q ss_pred HHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcc
Q 016097 212 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 291 (395)
Q Consensus 212 l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~ 291 (395)
++.||++|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 155 ~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~ 234 (334)
T 3pko_A 155 ILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPK 234 (334)
T ss_dssp HHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh
Confidence 99999999998877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhhcCcccHHHHHHhhhCc-hHHHHHH-cccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 016097 292 SLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 369 (395)
Q Consensus 292 ~~GK~~g~Dl~egk~TlPvl~Al~~~~-~~~~~l~-~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 369 (395)
.+|||+|+||++||+|||++++++..+ ++++++. +...++++++++++++.++|+++++++++++|.++|.+.|+.||
T Consensus 235 ~~GK~~g~Dl~egK~Tlp~i~al~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp 314 (334)
T 3pko_A 235 RTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLP 314 (334)
T ss_dssp SCCHHHHHHHHTTCCCHHHHHHGGGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCCCCCccccCchhHHHHHHHHhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999875 6777774 34457889999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 370 ENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 370 ~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.++ +++.|..|++++++|++
T Consensus 315 ~~~------~~~~L~~l~~~~~~R~~ 334 (334)
T 3pko_A 315 VGS------AQQSLEQLTRLLLRRDH 334 (334)
T ss_dssp SSH------HHHHHHHHHHHHTTCC-
T ss_pred CcH------HHHHHHHHHHHHHhccC
Confidence 987 99999999999999975
No 6
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=3.4e-71 Score=549.63 Aligned_cols=314 Identities=29% Similarity=0.431 Sum_probs=274.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
++...+.++++.|++.|++.+.+.+|.+.+++.|++..| |||+||.|++++++++|.... +.
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~ 96 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------EN 96 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HH
Confidence 456789999999999999999999999999999999988 999999999999999872222 26
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 215 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~G 215 (395)
++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++..+ +++++.+++++..++.|
T Consensus 97 ~~~~A~avEliH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~G 175 (360)
T 3lmd_A 97 VIKAAVVVEITHLATLYHDDVMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTG 175 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999875 58999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
|++|+.+..+. .++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 176 Q~ldl~~~~~~-~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK 254 (360)
T 3lmd_A 176 QMRETVGPRDT-DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGK 254 (360)
T ss_dssp HHHHHHCCTTS-CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHhccCCC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCC
Confidence 99999998766 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhCc----hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 016097 296 GSLSDIRHGIITAPILFAMEEFP----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 371 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~~----~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 371 (395)
|+|+||++||+|||++++++..+ .+..++.+...+++++++++++++++|++++|++++++|.++|++.|+.||++
T Consensus 255 ~~g~Dl~egK~Tlp~l~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 255 TPGTDLREGVFTLPVLYALREDTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDS 334 (360)
T ss_dssp -CCHHHHHTCCCHHHHHHHHCCSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CchhHHhcCCchHHHHHHHHcCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998753 45566665556778999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 016097 372 NDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 372 ~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+ +++.|..|++++++|+.
T Consensus 335 ~------~~~~L~~La~~~~~R~~ 352 (360)
T 3lmd_A 335 T------VKEALRNLATFTVKRVG 352 (360)
T ss_dssp H------HHHHHHHHHHHHHHTTS
T ss_pred H------HHHHHHHHHHHHHHhcc
Confidence 8 99999999999999963
No 7
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.2e-70 Score=545.12 Aligned_cols=313 Identities=25% Similarity=0.344 Sum_probs=287.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHH-----------hCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchh
Q 016097 58 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVED 126 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~-----------~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~ 126 (395)
...+..-...|+..|++.+.+.+|.+.+++.|.+ ..| |||+||+|++++++++|++.+
T Consensus 6 ~~~l~~~~~~v~~~l~~~v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~~--------- 74 (352)
T 3nf2_A 6 TALLERGRTLATPVLRAAVDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAPE--------- 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCGG---------
T ss_pred HHHHHHHHHHHHHHHHHHHcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCHH---------
Confidence 3566777788999999999999999999999998 566 999999999999999986432
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCH---HHHH
Q 016097 127 ALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVT 203 (395)
Q Consensus 127 ~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~---~v~~ 203 (395)
.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++.+++ ++++
T Consensus 75 --------~~~~~A~avEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~ 146 (352)
T 3nf2_A 75 --------VGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATR 146 (352)
T ss_dssp --------GGHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 016097 204 LLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 283 (395)
Q Consensus 204 ~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~ 283 (395)
.+++++..++.||++|+.+..+..+++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||+
T Consensus 147 ~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 147 RLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777889999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCccccCCCccchhhcCcccHHHHHHhhhC-c---hHHHHHHcc-------cCCchhHHHHHHHHHhcchHHHHHH
Q 016097 284 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRE 352 (395)
Q Consensus 284 lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~-~---~~~~~l~~~-------~~~~~~~~~i~~li~~sg~i~~a~~ 352 (395)
+||+++++.+|||+|+||++||+|||+++|++.. + ++..++.+. ..+++++++++++|+++|++++|++
T Consensus 227 ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~ 306 (352)
T 3nf2_A 227 LGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTAD 306 (352)
T ss_dssp HHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999974 3 355556543 2467889999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhccC
Q 016097 353 LAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 353 ~a~~~~~~A~~~L~~lp~-~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++++|.++|++.|+.||+ ++ +|+.|..|++++++|+.
T Consensus 307 ~a~~~~~~A~~~L~~lp~~~~------~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 307 EARRQHTIAIEALDAVDMPDR------VRDRFTALADFVVVRKR 344 (352)
T ss_dssp HHHHHHHHHHHHHTTSCCCHH------HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhccc
Confidence 999999999999999998 45 99999999999999963
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=7e-71 Score=546.40 Aligned_cols=316 Identities=28% Similarity=0.386 Sum_probs=291.9
Q ss_pred cCchhHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHH
Q 016097 55 LDPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELR 133 (395)
Q Consensus 55 ~~~~~~i~~el~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~ 133 (395)
.+.+..+.++++.|++.|++.+.+. +|.+.+++.|++..| |||+||.|++++++++|++.+
T Consensus 5 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~---------------- 66 (342)
T 1wy0_A 5 EELFARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDPL---------------- 66 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCGG----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHH----------------
Confidence 3567789999999999999999887 889999999999988 999999999999999976421
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHH
Q 016097 134 TRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATV 208 (395)
Q Consensus 134 ~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~-----~~~~v~~~~s~~ 208 (395)
.++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||..+++. .+.++++.++++
T Consensus 67 -~~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 145 (342)
T 1wy0_A 67 -RAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKA 145 (342)
T ss_dssp -GGHHHHHHHHHHHHHHHHHHHHHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHCCcccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999987 457899999999
Q ss_pred HHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 016097 209 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 288 (395)
Q Consensus 209 ~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g 288 (395)
+..++.||++|+.+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|+++
T Consensus 146 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 146 SNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999877778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccchhhcCcccHHHHHHhhhCc-hHHHHHHcccCC---------------chhHHHHHHHHHhcchHHHHHH
Q 016097 289 TSASLGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFED---------------SSNVDIALEYLGKSRGIQKTRE 352 (395)
Q Consensus 289 ~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~-~~~~~l~~~~~~---------------~~~~~~i~~li~~sg~i~~a~~ 352 (395)
+++.+|||+|+||++||+|||++++++..+ ..+..+.+.+.. +++++++++++.++|+++++++
T Consensus 226 d~~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~ 305 (342)
T 1wy0_A 226 DEKKLGKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAE 305 (342)
T ss_dssp CHHHHTSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhhCCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 999999999999999999999999998754 455555554432 5688999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 353 LAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 353 ~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.+++|.++|++.|+.||+++ .++.|..|++++++|++
T Consensus 306 ~~~~~~~~A~~~L~~l~~~~------~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 306 IAKDMIKKANEALRILPKSK------ARMDLELLAKFIVEREY 342 (342)
T ss_dssp HHHHHHHHHHTTGGGSCCCH------HHHHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhccC
Confidence 99999999999999999877 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=4.5e-70 Score=537.00 Aligned_cols=314 Identities=27% Similarity=0.412 Sum_probs=290.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
..+..+.++++.|++.|.+.+.+.+|.+.++++|++..| |||+||.+++++++++|++. +.
T Consensus 5 ~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~ 65 (325)
T 3aqb_B 5 SYKAFLNPYIIEVEKRLYECIQSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DD 65 (325)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HH
Confidence 456789999999999999999888899999999999988 99999999999999997642 25
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTG 215 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~G 215 (395)
++.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++...++++++.+++++..++.|
T Consensus 66 ~~~~A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~G 145 (325)
T 3aqb_B 66 LIRTAVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFG 145 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
|++|+.+..+...++++|++++++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 146 Q~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK 225 (325)
T 3aqb_B 146 EFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGK 225 (325)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred HHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCC
Confidence 99999988777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhCch-HHHHHH---cccC---CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 016097 296 GSLSDIRHGIITAPILFAMEEFPQ-LRTVVE---QGFE---DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 368 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~~~-~~~~l~---~~~~---~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 368 (395)
|+|+||++||+|||++++++..+. .++.+. +.+. ++++++++++++.++ +++++++.+++|.++|.+.|+.|
T Consensus 226 ~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~l 304 (325)
T 3aqb_B 226 PVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQL 304 (325)
T ss_dssp CTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987532 222332 2222 267899999999999 99999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 369 PENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 369 p~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
|+++ .++.|..|++++++|++
T Consensus 305 p~~~------~~~~L~~l~~~~~~R~~ 325 (325)
T 3aqb_B 305 QDSN------IKDYLEEIHEKMLKRVY 325 (325)
T ss_dssp CCCH------HHHHHHHHHHHHTTTTC
T ss_pred CCcH------HHHHHHHHHHHHHhCcC
Confidence 9988 89999999999999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.5e-68 Score=531.59 Aligned_cols=309 Identities=25% Similarity=0.354 Sum_probs=276.9
Q ss_pred hHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHH
Q 016097 59 SLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 137 (395)
Q Consensus 59 ~~i~~el~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 137 (395)
..++..++.|++.|.+.+... +|.+.+++.|++..| |||+||.|++++++++|++.. .++
T Consensus 8 ~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~ 68 (358)
T 4dhd_A 8 RLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR-----------------PAL 68 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------GGH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHH
Confidence 355667788999999999887 789999999999988 999999999999999987432 578
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHH
Q 016097 138 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGE 216 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-~~v~~~~s~~~~~l~~Gq 216 (395)
.+|+++||||+||||||||||+|++|||+||+|++||++.|||+||||+++||+.++.... .++++.+++++..++.||
T Consensus 69 ~~A~aiEliH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ 148 (358)
T 4dhd_A 69 PAAAIVELIHNYSLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGE 148 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCccccCCCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999976554 689999999999999999
Q ss_pred Hhhhccc-----------CCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 217 TMQMTTS-----------SDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 217 ~~dl~~~-----------~~~-~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
++|+.+. .+. ..++++|++|+.+|||+||+++|++||+++|++++..+.+++||.++|+||||+||++
T Consensus 149 ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 149 RLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp HHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 444 6799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhhcCcc-cHHHHHHhhhC-c----hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHH
Q 016097 285 DFTGTSASLGKGSLSDIRHGII-TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 358 (395)
Q Consensus 285 D~~g~~~~~GK~~g~Dl~egk~-TlPvl~Al~~~-~----~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 358 (395)
|++|+++.+|||+|+||++||+ |||++++++.. + .+..++.+...+++++++++++++++|++++|++++++|.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~ 308 (358)
T 4dhd_A 229 DIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYR 308 (358)
T ss_dssp HHHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HhcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999974 3 3556666666678899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 359 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 359 ~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++|++.|+.||+++ .|.+|++++++|++
T Consensus 309 ~~A~~~L~~lp~~~---------~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 309 EEAERHLAKIPNNG---------TLKELLDFIVAREY 336 (358)
T ss_dssp HHHHHHHTTSSSCH---------HHHHHHHHHTTTTT
T ss_pred HHHHHHHHcCCCCH---------HHHHHHHHHHhccc
Confidence 99999999999443 89999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-68 Score=526.66 Aligned_cols=307 Identities=25% Similarity=0.258 Sum_probs=277.7
Q ss_pred HHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHH
Q 016097 61 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 140 (395)
Q Consensus 61 i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA 140 (395)
.......|++.|.+.+...+|.+.+++.|++..| |||+||.|++++++++|++. +.++.+|
T Consensus 5 ~~~~~~~v~~~l~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A 65 (330)
T 1wmw_A 5 PEAIRQALQERLLARLDHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAA 65 (330)
T ss_dssp HHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHH
Confidence 3455667888899888888899999999999888 99999999999999997631 2578999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHH
Q 016097 141 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTG 215 (395)
Q Consensus 141 ~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-----~~v~~~~s~~~~~l~~G 215 (395)
+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++...+ +++++.+++++..++.|
T Consensus 66 ~avEliH~asLihDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G 145 (330)
T 1wmw_A 66 TALELFQNWVLVHDDIEDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYG 145 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987543 78999999999999999
Q ss_pred HHhhhcc-cCC-CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccc
Q 016097 216 ETMQMTT-SSD-QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 292 (395)
Q Consensus 216 q~~dl~~-~~~-~~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~ 292 (395)
|++|+.+ ..+ ...++++|++|+++|||+| |+++|++|++++|++++.. +++||.++|+||||+||++|++++++
T Consensus 146 Q~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~- 222 (330)
T 1wmw_A 146 QHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA- 222 (330)
T ss_dssp HHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-
Confidence 9999998 766 6789999999999999999 9999999999999988766 99999999999999999999999999
Q ss_pred cCCCccchhhcCcccHHHHHHhhhCc-hHHHHHHcccC----C--chhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 016097 293 LGKGSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE----D--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 365 (395)
Q Consensus 293 ~GK~~g~Dl~egk~TlPvl~Al~~~~-~~~~~l~~~~~----~--~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L 365 (395)
+|||+|+||++||+|||++++++..+ ..++.+.+.+. + +++++++++++.++|+++++++++++|.++|.+.|
T Consensus 223 ~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L 302 (330)
T 1wmw_A 223 YGKERAGDLYEGKRTLILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALL 302 (330)
T ss_dssp CSSSTTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864 34444443332 2 67899999999999999999999999999999999
Q ss_pred c----cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 366 D----SLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 366 ~----~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+ .||.++ .++.|..|++++++|++
T Consensus 303 ~~~i~~lp~~~------~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 303 EAAFQDLPGKE------ALDHLRGLLAALVERRA 330 (330)
T ss_dssp HTGGGGCSCHH------HHHHHHHHHHHHHHC--
T ss_pred HHHhhcCCCcH------HHHHHHHHHHHHHhccC
Confidence 9 999876 89999999999999975
No 12
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=4.7e-67 Score=509.31 Aligned_cols=282 Identities=24% Similarity=0.381 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHH
Q 016097 60 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 139 (395)
Q Consensus 60 ~i~~el~~v~~~l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (395)
.+.+|++.|++.|++.+.+.+| ++++|++..| |||+||.|++++++++|++.. +.++.+
T Consensus 8 ~~~~~l~~v~~~l~~~~~~~~~---~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~ 66 (299)
T 1v4e_A 8 QNSYELEKVKERIEQILSQFFP---EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISS 66 (299)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSC---HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCH---HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHH
Confidence 3678899999999998877666 8999999888 999999999999999986211 257899
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh
Q 016097 140 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQ 219 (395)
Q Consensus 140 A~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~d 219 (395)
|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++..++++++.+++++..++.||++|
T Consensus 67 A~avEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~d 146 (299)
T 1v4e_A 67 LAALELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIE 146 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccc
Q 016097 220 MTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 299 (395)
Q Consensus 220 l~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~ 299 (395)
+.+..+. .++++|++++++|||+||++||++|++++|+++ +.+++||.++|+||||+||++|++++ +.+|||+|+
T Consensus 147 l~~~~~~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~ 221 (299)
T 1v4e_A 147 QLSRYKP-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFL 221 (299)
T ss_dssp HHHTTSC-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSC
T ss_pred HHccCCC-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcch
Confidence 9988766 899999999999999999999999999999887 88999999999999999999999999 999999999
Q ss_pred hhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 300 DIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 372 (395)
Q Consensus 300 Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 372 (395)
||++||+|||++++++..+.+++++.+ ++++++++++.++|+++++++.+++|.++|.+.|+.||+..
T Consensus 222 Dl~egK~T~p~l~al~~~~~l~~~l~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 222 DLKNGVASFPLVTAMEKFPEARQMFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp CCTTTTCCHHHHHHHHHCHHHHHHHHT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HhhCCCchHHHHHHHHhChHHHHHHhH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999987666666654 57899999999999999999999999999999999999876
No 13
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=4.5e-66 Score=516.87 Aligned_cols=321 Identities=23% Similarity=0.294 Sum_probs=263.8
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCchh---HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEVPK---LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~~~---l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (395)
+....|.++|+.+-......+....|. +.+++.|++..| |||+||+|++++++++|+..+.. ..
T Consensus 20 ~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~~ 86 (380)
T 3lk5_A 20 KFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------EK 86 (380)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------SC
T ss_pred HHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------CC
Confidence 345567888887666655555444454 666777877788 99999999999999998641100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccc----------------cChhHHHHHHHHHHHHHHHHHHcC
Q 016097 133 RTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALASL 196 (395)
Q Consensus 133 ~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~----------------~G~~~AIl~GD~Lla~a~~~l~~~ 196 (395)
.+.++.+|+++||||+||||||||||+|++|||+||+|++ ||++.|||+||||+++||+++++.
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD~s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~ 166 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIIDSSDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDS 166 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2478999999999999999999999999999999999997 699999999999999999999986
Q ss_pred CC-----HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 016097 197 KN-----TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYG 270 (395)
Q Consensus 197 ~~-----~~v~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag~~~~~~~~l~~~G 270 (395)
.. .+++..++.+...++.||++|+.+..+...++++|++|+++|||+| |++||++||+++|++++..+.+++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G 246 (380)
T 3lk5_A 167 GLSAEALARTRDAWRGMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYG 246 (380)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 53 3567788888899999999999988777789999999999999999 89999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhC----chHHHHHHccc---CCchhHHHHHHHHHh
Q 016097 271 KNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF----PQLRTVVEQGF---EDSSNVDIALEYLGK 343 (395)
Q Consensus 271 ~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~----~~~~~~l~~~~---~~~~~~~~i~~li~~ 343 (395)
.++|+||||+||++|++|+++.+|||+|+||++||+|+|++++++.. |..++.+...+ .+++++++++++|++
T Consensus 247 ~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~ 326 (380)
T 3lk5_A 247 HDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRA 326 (380)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874 34444444332 356789999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 016097 344 SRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 394 (395)
Q Consensus 344 sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 394 (395)
+|+++++++++++|.++|++.|+.+|.++. +|+.|..|++++..|.
T Consensus 327 ~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~~-----~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 327 TGAEEEVEQRISQLTESGLAHLDDVDIPDE-----VRAQLRALAIRSTERR 372 (380)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGSCCCHH-----HHHHHHHHHHHHHC--
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHHHHhh
Confidence 999999999999999999999999996531 9999999999999885
No 14
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=5.6e-66 Score=504.64 Aligned_cols=298 Identities=27% Similarity=0.347 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhhcc-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 016097 65 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 143 (395)
Q Consensus 65 l~~v~~~l~~~i~~-~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 143 (395)
++.|++.|.+.+.. ..|.+.+ .|.+..| |||+||.|++++++.. . . ....+++..+|+++
T Consensus 6 ~~~i~~~l~~~~~~~~~~~~~~--~y~~~~g--GKrlRp~l~l~~~~~~-~--~------------~~~~~~~~~~A~ai 66 (315)
T 3tc1_A 6 LKAIQNKIASWIKEIESGFIDE--LFSKIGP--SKMLRSKLMLALLNEK-T--D------------AILLDKALNLCTIV 66 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH--HHTTCCC--CCCHHHHHHHTTCCTT-C--C------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHH--HHHhcCC--cccHHHHHHHHHhccC-c--c------------ccchhhHHHHHHHH
Confidence 45566677766653 3344433 5666677 9999999999988731 1 1 01124678999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhccc
Q 016097 144 EMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTS 223 (395)
Q Consensus 144 EliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~ 223 (395)
||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++..+ +++++.+++++..++.||++|+.+.
T Consensus 67 EliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~ 145 (315)
T 3tc1_A 67 EMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVG 145 (315)
T ss_dssp HHHHHHHHHHHHTC----------------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999887 8999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhc
Q 016097 224 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 303 (395)
Q Consensus 224 ~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~e 303 (395)
.+...++++|++|+++|||+||++||++|++++|++ .+.+++||.++|+||||+||++|++++++.+|||+|+||++
T Consensus 146 ~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~e 222 (315)
T 3tc1_A 146 ECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKE 222 (315)
T ss_dssp TSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGG
T ss_pred CCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHc
Confidence 777889999999999999999999999999999998 67899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHhhhC-chHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH
Q 016097 304 GIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 380 (395)
Q Consensus 304 gk~TlPvl~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~ 380 (395)
||+|||+++|++.. +..++.+...+. ++++++++++++.++|++++|++++++|.++|.+.|+.||+++ +|
T Consensus 223 gK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r 296 (315)
T 3tc1_A 223 GKTTLPYLLLYEKLNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LE 296 (315)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HH
T ss_pred CChhHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HH
Confidence 99999999999984 455555544333 6788999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHH
Q 016097 381 RALLDLTHRVI 391 (395)
Q Consensus 381 ~~L~~l~~~~~ 391 (395)
+.|..|++++.
T Consensus 297 ~~L~~l~~~~~ 307 (315)
T 3tc1_A 297 KLAQDVISRTF 307 (315)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.7e-66 Score=514.19 Aligned_cols=304 Identities=18% Similarity=0.280 Sum_probs=238.8
Q ss_pred HHHHHHHhh---ccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 016097 68 LAKRLRSMV---VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 144 (395)
Q Consensus 68 v~~~l~~~i---~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 144 (395)
|++.+.+.+ ...++.+.+++.|++..| |||+||.|++++++++|.+. +.+..+|+++|
T Consensus 10 v~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avE 70 (340)
T 2e8v_A 10 IDELINNDPVWSSQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVE 70 (340)
T ss_dssp HHHHHTSCCCCCHHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHH
Confidence 556666655 356678999999999988 99999999999999997531 25789999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHHHhh
Q 016097 145 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQ 219 (395)
Q Consensus 145 liH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~-----v~~~~s~~~~~l~~Gq~~d 219 (395)
|||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.++...+++ +++.+++++..++.||++|
T Consensus 71 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ld 150 (340)
T 2e8v_A 71 LLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLD 150 (340)
T ss_dssp HHHHHHHHHHHHHTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987766 9999999999999999999
Q ss_pred hcccCCC---CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCC
Q 016097 220 MTTSSDQ---RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 296 (395)
Q Consensus 220 l~~~~~~---~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~ 296 (395)
+.+..+. ..++++|++|+++|||+||+++|++|++++|+++ ..+.+++||.++|+||||+||++||+++++.+|||
T Consensus 151 l~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~ 229 (340)
T 2e8v_A 151 IYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKG 229 (340)
T ss_dssp HHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCC
T ss_pred HHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCC
Confidence 9876543 5699999999999999999999999999999987 58899999999999999999999999999999999
Q ss_pred ccchhhcCcccHHHHHHhhhCch---------HHHHHHcccCCchhHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH--
Q 016097 297 SLSDIRHGIITAPILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-- 364 (395)
Q Consensus 297 ~g~Dl~egk~TlPvl~Al~~~~~---------~~~~l~~~~~~~~~~~~i~~li~-~sg~i~~a~~~a~~~~~~A~~~-- 364 (395)
+|+||++||+|||++++++..+. +..++.....+.+..++++++|. ++|++++|++++++|.++|++.
T Consensus 230 ~g~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~ 309 (340)
T 2e8v_A 230 FAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNE 309 (340)
T ss_dssp TTHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--
T ss_pred chhhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999987532 44555544434444458999999 9999999999999999999999
Q ss_pred ---hccCCCCCCcchHHHHHHHHHHHHHHHh
Q 016097 365 ---IDSLPENNDEDVTKSRRALLDLTHRVIT 392 (395)
Q Consensus 365 ---L~~lp~~~~~~~~~~~~~L~~l~~~~~~ 392 (395)
|+.||+++.. ...+|+.|..|++++.+
T Consensus 310 ~~~L~~lp~~~~~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 310 NKYLPDLASHSDT-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------------------
T ss_pred cccHhhCCCCccc-cHHHHHHHHHHHHHHHh
Confidence 9999987510 11178999999999865
No 16
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=3.2e-66 Score=504.11 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=253.8
Q ss_pred HHHhhccCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 016097 72 LRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASL 151 (395)
Q Consensus 72 l~~~i~~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsL 151 (395)
+++.+.+.+|.+.++++|++..| |||+||.|++++++++|.+. +.+..+|+++||||+|||
T Consensus 2 ~~k~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asL 62 (301)
T 2q80_A 2 MEKTQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASL 62 (301)
T ss_dssp -----CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999988 99999999999999997531 257899999999999999
Q ss_pred hccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCH
Q 016097 152 LHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM 230 (395)
Q Consensus 152 iHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~-~~s~ 230 (395)
|||||||+|++|||+||+|.+||++.|||+||||+++||+.++...++++++.+++++..++.||++|+.+..+. ..++
T Consensus 63 iHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 142 (301)
T 2q80_A 63 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTE 142 (301)
T ss_dssp HHHHHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHccccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence 999999999999999999999999999999999999999999998888899999999999999999999885443 5799
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHH
Q 016097 231 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 310 (395)
Q Consensus 231 ~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPv 310 (395)
++|++|+++|||+||+++|++|++++|.++ .+++||.++|+||||+||++|++++++.+|||+|+||++||+|||+
T Consensus 143 ~~y~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~ 218 (301)
T 2q80_A 143 EEYKAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPT 218 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHH
Confidence 999999999999999999999999999873 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCc---hHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 016097 311 LFAMEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 387 (395)
Q Consensus 311 l~Al~~~~---~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~ 387 (395)
+++++..| .+...+.....+.+..+.++++|+++|+++++++++++|.++|.+.|+.||.++ .|..++
T Consensus 219 i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~ 289 (301)
T 2q80_A 219 IHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALV 289 (301)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHH
T ss_pred HHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHH
Confidence 99998754 355666554433333445999999999999999999999999999999999776 389999
Q ss_pred HHHHhccC
Q 016097 388 HRVITRNK 395 (395)
Q Consensus 388 ~~~~~R~~ 395 (395)
+++..|.+
T Consensus 290 ~~l~~~~~ 297 (301)
T 2q80_A 290 KHLSKMFK 297 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 99988754
No 17
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1.2e-64 Score=495.93 Aligned_cols=281 Identities=26% Similarity=0.357 Sum_probs=241.2
Q ss_pred cCchhHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHH
Q 016097 55 LDPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATE 131 (395)
Q Consensus 55 ~~~~~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~ 131 (395)
.+++..++++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.+
T Consensus 31 ~~~~~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-------------- 94 (324)
T 3uca_A 31 EDTAMNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK-------------- 94 (324)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH--------------
Confidence 3567789999999999999999875 789999999999888 999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC-----C-HHHHH
Q 016097 132 LRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----N-TEVVT 203 (395)
Q Consensus 132 ~~~~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~-----~-~~v~~ 203 (395)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++.. . .++++
T Consensus 95 ---~~~~~A~aiEliH~aSLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~ 171 (324)
T 3uca_A 95 ---KILTPAMAIEMIHTYSLIHDDLPCMDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATK 171 (324)
T ss_dssp ---GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 5788999999999999999999 99999999999999999999999999999999999998743 1 46788
Q ss_pred HHHHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhh
Q 016097 204 LLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLID 281 (395)
Q Consensus 204 ~~s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~D 281 (395)
.++++. ..++.||++|+.+..+...++++|++|+++|||+||+++|++||+++|++++..+.+++||.++|+||||+|
T Consensus 172 ~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~D 251 (324)
T 3uca_A 172 IIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKD 251 (324)
T ss_dssp HHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888886 689999999999987767899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 016097 282 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 361 (395)
Q Consensus 282 D~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 361 (395)
|++|++++++.+|||+|+|+++||+|||++++ ++++++.+++|.++|
T Consensus 252 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A 298 (324)
T 3uca_A 252 DILDVVGNAKDLGKNVHKDQESNKNNYITIFG---------------------------------LEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHCCC-----------------CHHHHHC---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCCcchHhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999994 578899999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 362 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 362 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++.|+.||.+. +.|.+|++++++|++
T Consensus 299 ~~~L~~l~~~~--------~~L~~la~~i~~R~~ 324 (324)
T 3uca_A 299 IEILSSIKGNT--------EPLKVLTMKLLERKF 324 (324)
T ss_dssp HHHHHTSSSCC--------HHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCcH--------HHHHHHHHHHHhccC
Confidence 99999999754 689999999999975
No 18
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=5e-64 Score=491.42 Aligned_cols=279 Identities=27% Similarity=0.328 Sum_probs=241.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATEL 132 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~ 132 (395)
++...+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 8 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~--------------- 70 (324)
T 3ts7_A 8 SLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD--------------- 70 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH---------------
Confidence 445678888899999999988764 678999999999988 999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC--C------HHHH
Q 016097 133 RTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVV 202 (395)
Q Consensus 133 ~~~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~--~------~~v~ 202 (395)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++.. + .+++
T Consensus 71 --~~~~~A~avEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i 148 (324)
T 3ts7_A 71 --LLDGPACAVEFIHVYSLIHDDLPAMDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMI 148 (324)
T ss_dssp --GTHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhcCcccccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999864 2 3578
Q ss_pred HHHHHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhh
Q 016097 203 TLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQL 279 (395)
Q Consensus 203 ~~~s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI 279 (395)
+.+++++ ..++.||++|+.+..+ ..++++|++|+++|||+||+++|++||+++| ++++..+.+++||.++|+||||
T Consensus 149 ~~la~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI 227 (324)
T 3ts7_A 149 ETLAKASGPAGMVGGQAIDLASVGK-KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQI 227 (324)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHhHHHHHHccCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888885 7899999999998766 7899999999999999999999999999999 9999999999999999999999
Q ss_pred hhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHH
Q 016097 280 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 359 (395)
Q Consensus 280 ~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~ 359 (395)
+||++|++++++.+|||+|+|+++||+|||+++ +++++++.++++.+
T Consensus 228 ~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~ 274 (324)
T 3ts7_A 228 QDDILDEESDTQTLGKTRGKDRDHNKPNYPALL---------------------------------GLSGAKEKAEEMHE 274 (324)
T ss_dssp HHHHHHHTCC---------------CCCHHHHH---------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHhCCCccchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 46889999999999
Q ss_pred HHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 360 LAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 360 ~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+|++.|+.||++. +.|..|++++++|++
T Consensus 275 ~A~~~L~~l~~~~--------~~L~~la~~~~~R~~ 302 (324)
T 3ts7_A 275 AALESLAGFGPEA--------DLLRELARFIIQRQS 302 (324)
T ss_dssp HHHHTTTTCCGGG--------HHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999998753 689999999999974
No 19
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=5.6e-64 Score=500.49 Aligned_cols=299 Identities=16% Similarity=0.144 Sum_probs=263.0
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 81 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 160 (395)
Q Consensus 81 ~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s 160 (395)
+.+.++++|.+ .| |||+||.|++++++++|++...+ ........+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 57888889987 48 99999999999999997642100 00000122334458899999999999999999999
Q ss_pred CCCCCCCCcccccCh--hHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhhhccc----------
Q 016097 161 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 223 (395)
Q Consensus 161 ~~RRG~pt~~~~~G~--~~AIl~GD~Lla~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Gq~~dl~~~---------- 223 (395)
++|||+||+|.+||+ ++||++||||+++||..++.. .+.++++.+++++..++.||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999875 357899999999999999999999887
Q ss_pred -C--CC---CCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCC
Q 016097 224 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 295 (395)
Q Consensus 224 -~--~~---~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK 295 (395)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 2 22 479999999999999999 9999999999999 88888999999999999999999999999999999999
Q ss_pred CccchhhcCcccHHHHHHhhhCc-hHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 296 GSLSDIRHGIITAPILFAMEEFP-QLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 372 (395)
Q Consensus 296 ~~g~Dl~egk~TlPvl~Al~~~~-~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~ 372 (395)
+|+||++||+|||++++++..+ ..++.+.+.+. ++++++++++++.++|+++++++.+++|.++|.+.|+.||+++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999854 45565655443 3678999999999999999999999999999999999999998
Q ss_pred CcchHHHH--HHHHHHHHHHHhccC
Q 016097 373 DEDVTKSR--RALLDLTHRVITRNK 395 (395)
Q Consensus 373 ~~~~~~~~--~~L~~l~~~~~~R~~ 395 (395)
.+ +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 88 999999999999986
No 20
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.5e-63 Score=486.78 Aligned_cols=278 Identities=27% Similarity=0.376 Sum_probs=228.6
Q ss_pred chhHHHHHHHHHHHHHHHhhccC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 57 PFSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 57 ~~~~i~~el~~v~~~l~~~i~~~--~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
+...+.+....|++.|.+.+... ++.|.++++|.+..| |||+||.|++++++++|++. +
T Consensus 5 ~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------------~ 65 (317)
T 4f62_A 5 LKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS-----------------S 65 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------H
Confidence 34567778888999999998765 678999999999888 99999999999999998742 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLA 206 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~------~~v~~~~s 206 (395)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++..+ .+++..++
T Consensus 66 ~~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la 145 (317)
T 4f62_A 66 LTDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELV 145 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 6889999999999999999999 999999999999999999999999999999999999998632 35778888
Q ss_pred HHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhh
Q 016097 207 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDV 283 (395)
Q Consensus 207 ~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~ 283 (395)
+++ ..++.||++|+.+..+ ..++++|++|+.+|||+||+++|++|++++| ++++..+.+++||.++|+||||+||+
T Consensus 146 ~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 146 VASGRNGMITGQMIDLSSENK-NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp HHHSTTTHHHHHHHHHHTSSS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHhHHHHHhccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 4799999999998754 5899999999999999999999999999999 89999999999999999999999999
Q ss_pred hcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 016097 284 LDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 363 (395)
Q Consensus 284 lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~ 363 (395)
+|++++++.+|||+|+|+++||+|||+++ +++++++.+++|.++|++
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~ 271 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANKATYPKLL---------------------------------GLDGAKALVVRLHEQAIA 271 (317)
T ss_dssp HHTC----------------CCCCHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHhhCCCcchHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 468899999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 364 AIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 364 ~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.|+.||+ .++.|.+|++++++|++
T Consensus 272 ~L~~l~~--------~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 272 QISEFGD--------KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp HHGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHhCch--------hHHHHHHHHHHHHHhcc
Confidence 9999985 34799999999999974
No 21
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=8.4e-64 Score=500.33 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=262.4
Q ss_pred chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 016097 80 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 159 (395)
Q Consensus 80 ~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~ 159 (395)
.+.+.++++|.. .| |||+||+||+++++++|++... ..+..+.+..+|+++||||+||||||||||+
T Consensus 63 ~~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~ 129 (374)
T 2qis_A 63 IARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDS 129 (374)
T ss_dssp HHHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 357889999877 58 9999999999999999863210 0122335788999999999999999999999
Q ss_pred CCCCCCCCCcccccChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhhhcccCCC-----CC
Q 016097 160 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RC 228 (395)
Q Consensus 160 s~~RRG~pt~~~~~G~~-~AIl~GD~Lla~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~-----~~ 228 (395)
|++|||+||+|++||++ +||++||++++.+|..++.. .+.++++.+++++..++.||++|+.+..+. ..
T Consensus 130 s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~ 209 (374)
T 2qis_A 130 SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 209 (374)
T ss_dssp CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGC
T ss_pred CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 99999999999999999 99999999999999988864 347899999999999999999999886531 37
Q ss_pred CHHHHHHHHHhhHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcc
Q 016097 229 SMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 306 (395)
Q Consensus 229 s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~ 306 (395)
++++|++|+.+|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++++++.+|| +|+||++||+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~ 288 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKC 288 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCC
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCc
Confidence 9999999999999999 9999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred cHHHHHHhhhC-chHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 016097 307 TAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 383 (395)
Q Consensus 307 TlPvl~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L 383 (395)
|||++++++.. +..++.+.+.+. ++++++++++++.++|+.++++..+++|.++|.+.|+.||.++ .++.|
T Consensus 289 T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L 362 (374)
T 2qis_A 289 SWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVF 362 (374)
T ss_dssp CHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 99999999985 456666665554 3678999999999999999999999999999999999999988 89999
Q ss_pred HHHHHHHHhccC
Q 016097 384 LDLTHRVITRNK 395 (395)
Q Consensus 384 ~~l~~~~~~R~~ 395 (395)
..|++++++|+|
T Consensus 363 ~~l~~~i~~R~k 374 (374)
T 2qis_A 363 LGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHcCcC
Confidence 999999999986
No 22
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.1e-64 Score=494.07 Aligned_cols=277 Identities=25% Similarity=0.314 Sum_probs=236.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcc--------CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHh
Q 016097 58 FSLVADELSILAKRLRSMVVA--------EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA 129 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~--------~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~ 129 (395)
...+.++++.|++.|.+.+.. .++.+.++++|++..| |||+||.|++++++++|++.
T Consensus 40 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~------------- 104 (335)
T 2h8o_A 40 ETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA------------- 104 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-------------
Confidence 446778888999999998866 4678999999999888 99999999999999997631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcC--C-----CHH
Q 016097 130 TELRTRQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K-----NTE 200 (395)
Q Consensus 130 ~~~~~~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~--~-----~~~ 200 (395)
+.++.+|+++||||+|||||||| ||+|++|||+||+|.+||+++|||+||||+++||+.+++. . ..+
T Consensus 105 ----~~~~~~A~aiEliH~asLIHDDiPamD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~ 180 (335)
T 2h8o_A 105 ----EAGLHVGAALECLHCYSLVHDDLPAMDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAA 180 (335)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHCCchhccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 25789999999999999999999 9999999999999999999999999999999999999986 1 246
Q ss_pred HHHHHHHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Q 016097 201 VVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 278 (395)
Q Consensus 201 v~~~~s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQ 278 (395)
+++.+++++ ..++.||++|+.+..+ ..++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+|||
T Consensus 181 ~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQ 259 (335)
T 2h8o_A 181 LVISLARAAGIGGMAGGQALDLAAEKK-APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQ 259 (335)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 888899998 8899999999998765 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHH
Q 016097 279 LIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHA 358 (395)
Q Consensus 279 I~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~ 358 (395)
|+||++|++++++.+|||+|+||++||+|||++++ ++++++.+++|.
T Consensus 260 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------le~a~~~a~~~~ 306 (335)
T 2h8o_A 260 LADDLLDLTADAATMGKATGKDAARGKGTLVALRG---------------------------------EAWAREKLQEQV 306 (335)
T ss_dssp HHHHHHHHC-----------------CCCHHHHHC---------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHH---------------------------------HHHHHHHHHHHH
Confidence 99999999999999999999999999999999994 478899999999
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 359 NLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 359 ~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++|++.|+.||. .++.|.+|++++++|++
T Consensus 307 ~~A~~~L~~l~~--------~~~~L~~l~~~i~~R~~ 335 (335)
T 2h8o_A 307 AEASELLAPYGE--------KAAILIAAARFIAERKS 335 (335)
T ss_dssp HHHHHHTGGGGG--------GGHHHHHHHHHHHC---
T ss_pred HHHHHHHHhCch--------hHHHHHHHHHHHHhccC
Confidence 999999999984 35789999999999974
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=4.1e-64 Score=489.05 Aligned_cols=273 Identities=27% Similarity=0.346 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHhhcc--CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHH
Q 016097 64 ELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 141 (395)
Q Consensus 64 el~~v~~~l~~~i~~--~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~ 141 (395)
..+.|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. .++.+|+
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~ 69 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEYE-----------------LGMKSAI 69 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCGG-----------------GGHHHHH
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHH
Confidence 445677888887766 5678999999999888 999999999999999986421 4678999
Q ss_pred HHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--HH
Q 016097 142 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EH 211 (395)
Q Consensus 142 avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~------~~~~v~~~~s~~~--~~ 211 (395)
++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++. ...++++.+++++ ..
T Consensus 70 avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~ 149 (301)
T 1rtr_A 70 ALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVG 149 (301)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhH
Confidence 999999999999999 9999999999999999999999999999999999999987 2456888899998 88
Q ss_pred HHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcc
Q 016097 212 LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSA 291 (395)
Q Consensus 212 l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~ 291 (395)
++.||++|+.+..+ ..++++|++++++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 150 ~~~GQ~~Dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~ 228 (301)
T 1rtr_A 150 MVGGQMLDMQSEGQ-PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEA 228 (301)
T ss_dssp HHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 99999999998765 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 016097 292 SLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 371 (395)
Q Consensus 292 ~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~ 371 (395)
.+|||+|+|+++||+|||++++ ++++++.+++|.++|++.|+.||++
T Consensus 229 ~~GK~~g~Dl~~gK~T~p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~ 275 (301)
T 1rtr_A 229 KLGKKVGSDLENNKSTYVSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDEQ 275 (301)
T ss_dssp C-------------CCHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HhCCCcchHHHcCCCcHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999996 3577899999999999999999977
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 016097 372 NDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 372 ~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+ .++.|..|++++++|++
T Consensus 276 ~------~~~~L~~l~~~i~~R~~ 293 (301)
T 1rtr_A 276 F------NTKHLLEIVDLFYSRDH 293 (301)
T ss_dssp S------CCHHHHHHHHHHHCC--
T ss_pred h------HHHHHHHHHHHHHHhhc
Confidence 7 67899999999999974
No 24
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=4e-64 Score=489.06 Aligned_cols=280 Identities=26% Similarity=0.381 Sum_probs=255.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 58 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
...+.++++.|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 4 ~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~ 64 (299)
T 1rqj_A 4 PQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------N 64 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3467788889999999988764 678999999999888 99999999999999998631 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC--------CHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVTL 204 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~--------~~~v~~~ 204 (395)
.++.+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++.. ..+++..
T Consensus 65 ~~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (299)
T 1rqj_A 65 TLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISE 144 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999851 2357888
Q ss_pred HHHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhhhh
Q 016097 205 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLID 281 (395)
Q Consensus 205 ~s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~l-ag~~~~~~~~l~~~G~~lG~afQI~D 281 (395)
+++++ ..++.||++|+.+..+ ..++++|++|+++|||+||+++|++|+++ +|++++..+.+++||.++|+||||+|
T Consensus 145 l~~~~g~~~~~~GQ~~dl~~~~~-~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~D 223 (299)
T 1rqj_A 145 LASASGIAGMCGGQALDLDAEGK-HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQD 223 (299)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTT-CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHhHHHHHhccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 7999999999998766 78999999999999999999999999999 99999999999999999999999999
Q ss_pred hhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 016097 282 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 361 (395)
Q Consensus 282 D~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 361 (395)
|++|++++++.+|||+|+|+++||+|||+++++ ++++..+++|.++|
T Consensus 224 D~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~A 270 (299)
T 1rqj_A 224 DILDVVGDTATLGKRQGADQQLGKSTYPALLGL---------------------------------EQARKKARDLIDDA 270 (299)
T ss_dssp HHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCH---------------------------------HHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHhCCChhhHHHcCCCcHHHHHHH---------------------------------HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999964 46789999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 362 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 362 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++.|+.||.++. .++.|.+|++++++|++
T Consensus 271 ~~~L~~l~~~~~-----~~~~L~~l~~~~~~R~~ 299 (299)
T 1rqj_A 271 RQSLKQLAEQSL-----DTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHHHHTTTC-----CCHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCCCcH-----HHHHHHHHHHHHHhccC
Confidence 999999997331 57899999999999975
No 25
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.7e-63 Score=484.67 Aligned_cols=277 Identities=28% Similarity=0.365 Sum_probs=239.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 58 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
...+......|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++..
T Consensus 4 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------- 64 (304)
T 3lsn_A 4 TAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE----------------- 64 (304)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------
Confidence 3467777888999999998865 578999999999888 999999999999999986432
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC----C----HHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----N----TEVVTL 204 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~----~----~~v~~~ 204 (395)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .++++.
T Consensus 65 ~~~~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 144 (304)
T 3lsn_A 65 QANGAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTT 144 (304)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 5789999999999999999999 99999999999999999999999999999999999999874 2 357888
Q ss_pred HHHHHH--HHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhhhh
Q 016097 205 LATVVE--HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLID 281 (395)
Q Consensus 205 ~s~~~~--~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~-~~~~~~~l~~~G~~lG~afQI~D 281 (395)
+++++. .++.||++|+.+..+ ..++++|++|+++|||+||++||++|++++|+ +++..+.+++||.++|+||||+|
T Consensus 145 l~~a~~~~~~~~GQ~lDl~~~~~-~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~D 223 (304)
T 3lsn_A 145 LAQAAGPAGMVGGQAIDLGSVGL-KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQD 223 (304)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHchhhHhHhHHHHHHccCC-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888884 599999999998765 48999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q 016097 282 DVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLA 361 (395)
Q Consensus 282 D~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A 361 (395)
|++|++++++.+|||+|+|+++||+|||+++ +++++++.++++.++|
T Consensus 224 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 224 DILDVESDTATLGKRQGADIARDKPTYPALL---------------------------------GLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHC------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHhCCCcccHHhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 4688899999999999
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 362 AAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 362 ~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
++.|+.||+. ++.|..|++++++|++
T Consensus 271 ~~~L~~l~~~--------~~~L~~l~~~~~~R~~ 296 (304)
T 3lsn_A 271 LHALRPFDAA--------AEPLRELARYIVERRS 296 (304)
T ss_dssp HHHTTTSCGG--------GHHHHHHHHHHHC---
T ss_pred HHHHHhCchh--------HHHHHHHHHHHHHhcc
Confidence 9999999853 4789999999999964
No 26
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.7e-63 Score=484.45 Aligned_cols=276 Identities=25% Similarity=0.343 Sum_probs=225.0
Q ss_pred hHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 59 SLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 59 ~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
..+...++.|++.|.+.+... ++.+.+++.|.+..| |||+||.|++++++++|++.. .
T Consensus 11 ~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 71 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS-----------------D 71 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------G
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------H
Confidence 467888999999999988764 578999999999988 999999999999999987432 5
Q ss_pred HHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC--C------HHHHHHH
Q 016097 136 QQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLL 205 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~--~------~~v~~~~ 205 (395)
+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. + .+++..+
T Consensus 72 ~~~~A~aiEliH~asLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l 151 (302)
T 3p8r_A 72 LDTPASAVECIHAYSLIHDDLPAMDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQAL 151 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHH
Confidence 789999999999999999999 99999999999999999999999999999999999999864 1 3577888
Q ss_pred HHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhh
Q 016097 206 ATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDD 282 (395)
Q Consensus 206 s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD 282 (395)
++++ ..++.||++|+.+.. ...++++|++|+++|||+||+++|++|++++| ++++..+.+++||.++|+||||+||
T Consensus 152 ~~a~g~~~~~~GQ~lDl~~~~-~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 152 AEASGAQGMCLGQALDLAAEN-RLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp HHHHSTTTHHHHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHhHHHHHHccC-CCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 689999999999874 46899999999999999999999999999999 8888889999999999999999999
Q ss_pred hhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 016097 283 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 362 (395)
Q Consensus 283 ~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~ 362 (395)
++|++++++.+|||+|+|+++||+|||++++ ++++++.+++|.++|+
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~ 277 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKSTYPALLG---------------------------------LEGAQQKAHTLLQEAL 277 (302)
T ss_dssp HHHHTTC---------------CCCHHHHHH---------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCCcchHHhcCCchHHHHHH---------------------------------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999994 5789999999999999
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 363 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 363 ~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+.|+.||.+. +.|..|++++++|++
T Consensus 278 ~~L~~l~~~~--------~~L~~l~~~~~~R~~ 302 (302)
T 3p8r_A 278 LALEAIPYNT--------EHLEEFARYVVERKN 302 (302)
T ss_dssp HHHTTCSSCT--------HHHHHHHHHHHHCCC
T ss_pred HHHHhCCccH--------HHHHHHHHHHHhccC
Confidence 9999999764 689999999999975
No 27
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.6e-63 Score=484.07 Aligned_cols=275 Identities=31% Similarity=0.395 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHhhcc--CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHH
Q 016097 61 VADELSILAKRLRSMVVA--EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 138 (395)
Q Consensus 61 i~~el~~v~~~l~~~i~~--~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (395)
-+..+..|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++.. +.++.
T Consensus 14 ~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~~ 75 (302)
T 3p8l_A 14 SQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDYQ 75 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHHH
T ss_pred hHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHHH
Confidence 366677788888888775 3679999999999988 999999999999999987532 15789
Q ss_pred HHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--
Q 016097 139 IAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV-- 209 (395)
Q Consensus 139 lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-----~~v~~~~s~~~-- 209 (395)
+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++... .++++.+++++
T Consensus 76 ~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~ 155 (302)
T 3p8l_A 76 VAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGN 155 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhh
Confidence 999999999999999999 999999999999999999999999999999999999998532 36778888887
Q ss_pred HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 016097 210 EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 210 ~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
..++.||++|+.+... ..++++|++|+++|||+||+++|++|++++|++++..+.+++||.++|+||||+||++|++++
T Consensus 156 ~~~~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d 234 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKV-SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATST 234 (302)
T ss_dssp TTHHHHHHHHHHTTTS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHccCC-CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7899999999998754 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCC
Q 016097 290 SASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 369 (395)
Q Consensus 290 ~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp 369 (395)
++.+|||+|+|+++||+|||+++ +++.+++.++++.++|++.|+.||
T Consensus 235 ~~~~GK~~g~Dl~egK~T~p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 235 EADLGKKVGRDEALNKSTYPALL---------------------------------GIAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp ----------------CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHhcCCCcHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999 467888999999999999999998
Q ss_pred C---CCCcchHHHHHHHHHHHHHHHhc
Q 016097 370 E---NNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 370 ~---~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
+ ++ .++.|..|++++++|
T Consensus 282 ~~~~~~------~~~~L~~l~~~~~~R 302 (302)
T 3p8l_A 282 ANVPNF------SEEHLANLLTQLQLR 302 (302)
T ss_dssp HHCSSC------CHHHHHHHHHHTSCC
T ss_pred cccCCh------hHHHHHHHHHHHhhC
Confidence 6 66 678999999999987
No 28
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=6.8e-64 Score=503.00 Aligned_cols=330 Identities=18% Similarity=0.151 Sum_probs=268.8
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHHhhc---cCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhh
Q 016097 51 SQEQLDPFSLVADELSILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDA 127 (395)
Q Consensus 51 ~~~~~~~~~~i~~el~~v~~~l~~~i~---~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~ 127 (395)
.+++.+.|+.|.++|. +.+...+. ...+.+.++++|.+ .| |||+||+||+++++++|+..+.. ++...+.
T Consensus 26 ~~~f~~~~~~v~~~l~---~~l~~~~~~~~~~~~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~~~~~~ 98 (390)
T 3dyh_A 26 MQMFMQVYDEIQMFLL---EELELKFDMDPNRVRYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NGEEDDG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHSCCCHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------CC
T ss_pred HHHHHHHHHHHHHHHH---HHHhhccccchhHHHHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-ccccccc
Confidence 3444455555555544 33333222 12347899999998 78 99999999999999987510000 0000000
Q ss_pred HhHHHHHHHHHHHH----HHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHH--HHHHHcC-C-C-
Q 016097 128 LATELRTRQQCIAE----ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-K-N- 198 (395)
Q Consensus 128 ~~~~~~~~~~~lA~----avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a--~~~l~~~-~-~- 198 (395)
...+.++++|+ ++||||+||||||||||+|++|||+||+|++||+..||++||+++..+ |.+++.. . .
T Consensus 99 ---~~~~~~~~~A~~~g~avEliH~asLIHDDImD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~ 175 (390)
T 3dyh_A 99 ---ARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRP 175 (390)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCT
T ss_pred ---CCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 01124555555 899999999999999999999999999999999999999999999755 6777653 2 2
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhccc----------CC------CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCC
Q 016097 199 --TEVVTLLATVVEHLVTGETMQMTTS----------SD------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT 259 (395)
Q Consensus 199 --~~v~~~~s~~~~~l~~Gq~~dl~~~----------~~------~~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag~~ 259 (395)
.++++.+++++..++.||++|+.+. .. ...++++|++|+++|||+| |++||++|++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~ 255 (390)
T 3dyh_A 176 FLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEAL 255 (390)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999872 11 2579999999999999999 999999999999998
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhC-chHHHHHHcccC--CchhHH
Q 016097 260 AEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVD 335 (395)
Q Consensus 260 ~~~-~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~-~~~~~~l~~~~~--~~~~~~ 335 (395)
++. .+.+++||.++|+||||+||++|++|+++.+|| +|+||++||+|||+++|++.. |+.++.|.+.+. ++++++
T Consensus 256 ~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~ 334 (390)
T 3dyh_A 256 PTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVA 334 (390)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHH
Confidence 875 789999999999999999999999999999999 999999999999999999984 666677766553 577899
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 336 IALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 336 ~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
+++++++++|+++++++.++++.++|.+.|+.||+++. ..++.|..|++++++|+|
T Consensus 335 ~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~~~----~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 335 TVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLCSP----GFAASVETLWGKTYKRQK 390 (390)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999881 038899999999999987
No 29
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=9e-63 Score=491.76 Aligned_cols=295 Identities=20% Similarity=0.199 Sum_probs=264.9
Q ss_pred hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 81 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 160 (395)
Q Consensus 81 ~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s 160 (395)
+.+.++++|.+ .| |||+||++|+++++++|++.+. ..+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 47899999988 48 9999999999999999763110 01222357899999999999999999999999
Q ss_pred CCCCCCCCcccccChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhhhcccCCC-----CCC
Q 016097 161 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 229 (395)
Q Consensus 161 ~~RRG~pt~~~~~G~~-~AIl~GD~Lla~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~-----~~s 229 (395)
++|||+||+|++||++ ++|+.||++++.+|.+++.. .+.++++.+++++..++.||++|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999998874 347899999999999999999999886532 579
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCccc
Q 016097 230 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 307 (395)
Q Consensus 230 ~~~Y~~~~~~KTa~L-~~~a~~~ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~T 307 (395)
+++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|+||||+||++|++|+++.+|| +|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhC-chHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 016097 308 APILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 384 (395)
Q Consensus 308 lPvl~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 384 (395)
||++++++.. ++.++.+.+.+. ++++++++++++.++|+.++++..+++|.++|.+.|+.||+++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 9999999984 566666766554 3678999999999999888898999999999999999999887 789999
Q ss_pred HHHHHHHhccC
Q 016097 385 DLTHRVITRNK 395 (395)
Q Consensus 385 ~l~~~~~~R~~ 395 (395)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 30
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=9.2e-63 Score=494.92 Aligned_cols=321 Identities=18% Similarity=0.177 Sum_probs=257.4
Q ss_pred chhhhcCchhHHHHHHHHHHHHHHHhh-ccCc-----hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCC
Q 016097 50 DSQEQLDPFSLVADELSILAKRLRSMV-VAEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDG 123 (395)
Q Consensus 50 ~~~~~~~~~~~i~~el~~v~~~l~~~i-~~~~-----~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~ 123 (395)
..+.+.+.|+.+.+++.+ ++.+.. +... +.+.+++.|.. .| |||+||+||+++++++|++...
T Consensus 32 ~~~~f~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~~----- 100 (395)
T 2ihi_A 32 GLAFFRNMYDKYRDAFLS---HLNEYSLEEEIKEHISKYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDIN----- 100 (395)
T ss_dssp ---CTTTTHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---CC-----
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhCCCChhhhhhHHHHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCCC-----
Confidence 346667778877777774 333321 1111 56778899988 68 9999999999999999863211
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhH--HHHHHHHHHHHHHHHHHcC-C---
Q 016097 124 VEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-K--- 197 (395)
Q Consensus 124 ~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~--AIl~GD~Lla~a~~~l~~~-~--- 197 (395)
.+..+.+..+|+++||||+||||||||||+|++|||+||+|++||+.. ||++||+|++.+|.+++.. .
T Consensus 101 ------~~~~~~a~~lA~aiEliH~asLIHDDImD~s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~ 174 (395)
T 2ihi_A 101 ------SSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNES 174 (395)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 123457889999999999999999999999999999999999999998 9999999999999998763 1
Q ss_pred -CHHHHHHHHHHHHHHHHHHHhhhc-c-----------------c---CC---CCCCHHHHHHHHHhhHHHH-HHHHHHH
Q 016097 198 -NTEVVTLLATVVEHLVTGETMQMT-T-----------------S---SD---QRCSMDYYMQKTYYKTASL-ISNSCKA 251 (395)
Q Consensus 198 -~~~v~~~~s~~~~~l~~Gq~~dl~-~-----------------~---~~---~~~s~~~Y~~~~~~KTa~L-~~~a~~~ 251 (395)
..++++.|++++..++.||.+|+. | . .. ...++++|++|+.+|||+| |.++|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ 254 (395)
T 2ihi_A 175 CYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVC 254 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHH
Confidence 268999999999999999999992 1 1 11 1578999999999999999 9999999
Q ss_pred HHHHcCCCHHH--HHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhhC-chHHHHHHccc
Q 016097 252 IALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGF 328 (395)
Q Consensus 252 ga~lag~~~~~--~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~-~~~~~~l~~~~ 328 (395)
|++++|++++. .+.++.||.++|+||||+||++|++|+++.+|| +|+||++||+|||++++++.. ++.++.+...+
T Consensus 255 ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~ 333 (395)
T 2ihi_A 255 GMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNY 333 (395)
T ss_dssp HHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999887 899999999999999999999999999999999 999999999999999999984 56666665544
Q ss_pred C--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 016097 329 E--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 394 (395)
Q Consensus 329 ~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 394 (395)
. ++++++++++++.++|+++++++.++++.++|.+.|+.+|+++ .|+.|..|++++++|.
T Consensus 334 ~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 334 GKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp C-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCHH------HHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhccC
Confidence 3 5678999999999999999999999999999999999999987 9999999999999984
No 31
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=3.2e-62 Score=492.75 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=239.4
Q ss_pred hHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 016097 82 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 161 (395)
Q Consensus 82 ~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~ 161 (395)
.+..+.+|.+. | |||+||+||+++++++|+.... ....++++.+|++|||||+||||||||||+|+
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 45556677774 8 9999999999999999764321 23345789999999999999999999999999
Q ss_pred CCCCCCCcccccChhHHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHhhhcccCC---------
Q 016097 162 TRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD--------- 225 (395)
Q Consensus 162 ~RRG~pt~~~~~G~~~AIl~GD~Lla--~a~~~l~~~-----~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~--------- 225 (395)
+|||+||+|++||++.||++||+|+. .++.++... ...++++.++++...++.||.+|+.+..+
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999998774 456665532 23678999999999999999999865321
Q ss_pred ---------------CCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 016097 226 ---------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFT 287 (395)
Q Consensus 226 ---------------~~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag~~--~~~~~~l~~~G~~lG~afQI~DD~lD~~ 287 (395)
...++++|++|+++|||+| |.+||.+|++++|++ +...+.+++||.++|+||||+||++|++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2468999999999999999 899999999999875 4567899999999999999999999999
Q ss_pred CCccccCCCccchhhcCcccHHHHHHhhhC-chHHHHHHcccC--CchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 016097 288 GTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 364 (395)
Q Consensus 288 g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~-~~~~~~l~~~~~--~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 364 (395)
|+++.+|| +|+||++||+|||+++|++.. +..+..+.+.+. ++++++.+.+++.++|+.+++++.++++.++|.+.
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~ 371 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSA 371 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999 699999999999999999974 455555554443 56778899999999999999999999999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 016097 365 IDSLPENNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 365 L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
|+.+|... .+..|..+++++.++
T Consensus 372 l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 372 INELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHhCCcHH------HHHHHHHHHHHHhcC
Confidence 99999766 777888888877665
No 32
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=6.6e-64 Score=497.95 Aligned_cols=314 Identities=16% Similarity=0.178 Sum_probs=271.0
Q ss_pred CCchhhhcCchhHHHHHHHHHHHHHHHh-hccCc-----hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCC
Q 016097 48 DTDSQEQLDPFSLVADELSILAKRLRSM-VVAEV-----PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLH 121 (395)
Q Consensus 48 ~~~~~~~~~~~~~i~~el~~v~~~l~~~-i~~~~-----~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~ 121 (395)
..-.+++...|+.+.+++.+. +.+. ++... +.+.++..|.. .| |||+||++|+++++++|+..++
T Consensus 22 ~~~~~~f~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~--- 92 (368)
T 2her_A 22 EYDYTDFINYYDKFKVIVYNV---LKKLPLNDEIRKPVIEYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI--- 92 (368)
T ss_dssp -CCCTTGGGTHHHHHHHHHTT---CCCCTTSCCTTTTHHHHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS---
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHhCCCCcchhhhHHHHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc---
Confidence 444567777788888777743 2221 12222 56778888887 68 9999999999999999753221
Q ss_pred CCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHH---HHHHHHHHcC-C
Q 016097 122 DGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K 197 (395)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Ll---a~a~~~l~~~-~ 197 (395)
..+.+..+|+++||||+||||||||||+|++|||+||+|++||+..|||+||||+ +++|.+++.. .
T Consensus 93 ----------~~~~~~~~A~avEllH~asLIHDDImD~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~ 162 (368)
T 2her_A 93 ----------KRDSIYLLGWVVEAIQALILIADDIMDSGKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG 162 (368)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC
T ss_pred ----------cHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1246889999999999999999999999999999999999999999999999999 8888877753 2
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCH-HHHHHHHHhhHHHH-HHHHHHHHHHHcCCCHHH--HHHHHHH
Q 016097 198 ---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-DYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDY 269 (395)
Q Consensus 198 ---~~~v~~~~s~~~~~l~~Gq~~dl~~~~~~-~~s~-~~Y~~~~~~KTa~L-~~~a~~~ga~lag~~~~~--~~~l~~~ 269 (395)
..++++.+++++..++.||++|+.+.... ..+. ++|++|+++|||+| |++||++|++++|++++. .+.+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~ 242 (368)
T 2her_A 163 NDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 24789999999999999999999987643 4455 99999999999999 999999999999999887 8999999
Q ss_pred HHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHHhhh-CchHHHHHHcccCCchhHHHHHHHHHhcchHH
Q 016097 270 GKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQ 348 (395)
Q Consensus 270 G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~-~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~ 348 (395)
|.++|+||||+||++|++ .+|| +|+||++||+|||+++|++. .|+.++.+.+.+..++ +++++++.++|+++
T Consensus 243 g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~ 315 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINE 315 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHH
Confidence 999999999999999999 7899 99999999999999999997 4677777877776555 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 016097 349 KTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 393 (395)
Q Consensus 349 ~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R 393 (395)
++++.+++|.++|.+.|+.+|.++ .|+.|..|+++++++
T Consensus 316 ~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~~~i~~~ 354 (368)
T 2her_A 316 HYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIHQISEL 354 (368)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHH
Confidence 999999999999999999999987 999999999999875
No 33
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=8.1e-63 Score=478.41 Aligned_cols=273 Identities=27% Similarity=0.327 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHH
Q 016097 59 SLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 137 (395)
Q Consensus 59 ~~i~~el~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 137 (395)
..+......|++.|.+.+... ++.+.++++|. ..| |||+||.|++++++++|++. +.+.
T Consensus 5 ~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~ 64 (297)
T 3m0g_A 5 ERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------AQAM 64 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHH
Confidence 456777778889999888765 66899999999 878 99999999999999998642 2688
Q ss_pred HHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHH
Q 016097 138 CIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLATVV 209 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~------~~v~~~~s~~~ 209 (395)
.+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++... .++++.+++++
T Consensus 65 ~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~ 144 (297)
T 3m0g_A 65 PAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQAS 144 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999988641 36888999998
Q ss_pred --HHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 016097 210 --EHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286 (395)
Q Consensus 210 --~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~ 286 (395)
..++.||++|+.+.. ....++++|++|+++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|+
T Consensus 145 g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~ 221 (297)
T 3m0g_A 145 GAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDV 221 (297)
T ss_dssp STTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC--
T ss_pred hHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999872 3468999999999999999999999999999998877 8999999999999999999999
Q ss_pred cCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 016097 287 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 366 (395)
Q Consensus 287 ~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 366 (395)
+++++.+|||+|+|+++||+|||++++ ++++++.++++.++|++.|+
T Consensus 222 ~~~~~~~GK~~g~Dl~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 222 EGNEEAAGKRLGKDAEAHKATFVSLLG---------------------------------LAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp -------------------CCHHHHHC---------------------------------SSHHHHHHHHHHHHHHHHTG
T ss_pred cCCHHHhCCCccchhhcCCccHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 56788999999999999999
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 367 SLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 367 ~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
.||++. +.|.+|++++++|++
T Consensus 269 ~~~~~~--------~~L~~l~~~~~~R~~ 289 (297)
T 3m0g_A 269 PYGEAA--------STLRACARYVIERDK 289 (297)
T ss_dssp GGGGGG--------HHHHHHHHHHTC---
T ss_pred hCCCCH--------HHHHHHHHHHHHhcc
Confidence 998754 689999999999974
No 34
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.3e-62 Score=478.46 Aligned_cols=279 Identities=24% Similarity=0.324 Sum_probs=241.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccC--chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHH
Q 016097 58 FSLVADELSILAKRLRSMVVAE--VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 135 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~~--~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 135 (395)
...+++.+..|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++.. +
T Consensus 9 ~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~ 69 (309)
T 3pde_A 9 IAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------P 69 (309)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------H
Confidence 3467788888999998888765 679999999999988 999999999999999987532 4
Q ss_pred H--HHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHH
Q 016097 136 Q--QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLA 206 (395)
Q Consensus 136 ~--~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-----~~v~~~~s 206 (395)
. ..+|+++||||+|||||||| ||+|++|||+||+|++||+++|||+||||+++||+.+++... .++++.++
T Consensus 70 ~~~~~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~ 149 (309)
T 3pde_A 70 ERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALA 149 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5 89999999999999999999 999999999999999999999999999999999999998652 36788888
Q ss_pred HHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 207 TVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 207 ~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
+++ ..++.||++|+.+... ..++++|+.|+++|||+||++||++||+++|++++..+.+++||.++|+||||+||++
T Consensus 150 ~a~g~~~m~~GQ~lDl~~~~~-~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 150 TAAGPSGMVAGQAKDIQSEHV-NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp HHHSTTTHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhHHHHhHHHHHHccCC-CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 7899999999998754 6799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 016097 285 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 364 (395)
Q Consensus 285 D~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~ 364 (395)
|++++++.+|||+|+|+++||+|||+++++ +.+...++++.++|.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~T~p~l~al---------------------------------~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKNTYPGKLGL---------------------------------IGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHCC-----------CTTTSSSHHHHHCH---------------------------------HHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHHHH---------------------------------HHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999954 66778899999999999
Q ss_pred hccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 365 IDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 365 L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
|+.+|.+-. .+. |.+|++++++|+.
T Consensus 276 l~~~~~~~~-----~~~-L~~l~~~~~~r~~ 300 (309)
T 3pde_A 276 LQGLPTSTQ-----RDD-LAAFFSYFDTERV 300 (309)
T ss_dssp HHTSCCCHH-----HHH-HHGGGGGSCTTTT
T ss_pred HHHhhhccC-----HHH-HHHHHHHHHHhhc
Confidence 999876531 223 9999999999963
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=1.5e-62 Score=479.51 Aligned_cols=276 Identities=26% Similarity=0.362 Sum_probs=236.5
Q ss_pred hhHHHHHHHHHHHHHHHhhccC---chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 58 FSLVADELSILAKRLRSMVVAE---VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 58 ~~~i~~el~~v~~~l~~~i~~~---~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
...+.+....|++.|.+.+... ++.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 10 ~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 70 (313)
T 3lom_A 10 KQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------G 70 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3456666777889999888764 678999999999888 99999999999999998642 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC--------CHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--------NTEVVTL 204 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~--------~~~v~~~ 204 (395)
.+..+|+++||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. ..+++..
T Consensus 71 ~~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~ 150 (313)
T 3lom_A 71 VLDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQV 150 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 6889999999999999999999 99999999999999999999999999999999999998751 1247777
Q ss_pred HHHHH--HHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhhh
Q 016097 205 LATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLI 280 (395)
Q Consensus 205 ~s~~~--~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~afQI~ 280 (395)
+++++ ..++.||++|+.+..+...++++|++|+++|||+||+++|++ |+++| ++++..+.+++||.++|+||||+
T Consensus 151 la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~ 229 (313)
T 3lom_A 151 LVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQ 229 (313)
T ss_dssp HHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88886 689999999999987667899999999999999999999999 99999 89999999999999999999999
Q ss_pred hhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 016097 281 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 360 (395)
Q Consensus 281 DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 360 (395)
||++|++++++.+|||+|+|+++||+|||+++ +++++++.++++.++
T Consensus 230 DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~---------------------------------~l~~a~~~a~~~~~~ 276 (313)
T 3lom_A 230 DDYLDLYAPTQILGKGRSSDQANQKTTFATLF---------------------------------NKQQLEEEIAVHYQI 276 (313)
T ss_dssp HHHHHHHCC---------------CCCHHHHS---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHhhCCCCcchhhcCCccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 468889999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 016097 361 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 394 (395)
Q Consensus 361 A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~ 394 (395)
|++.|+.||++. +.|.+|++++++|+
T Consensus 277 A~~~L~~l~~~~--------~~L~~la~~~~~R~ 302 (313)
T 3lom_A 277 AMDSLRLFGSKA--------AALIELTKQLQNRS 302 (313)
T ss_dssp HHHTTTTTGGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccH--------HHHHHHHHHHHhcc
Confidence 999999998643 68999999999996
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=6.2e-62 Score=471.80 Aligned_cols=271 Identities=26% Similarity=0.394 Sum_probs=235.7
Q ss_pred HHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 016097 66 SILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 144 (395)
Q Consensus 66 ~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 144 (395)
..|++.|.+.+... .|.+.+++.|.+..| |||+||.|++++++++|++.+ .+..+|+++|
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~avE 72 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAVE 72 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHH
Confidence 56667777766653 378999999999988 999999999999999986532 4778999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccC
Q 016097 145 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS 224 (395)
Q Consensus 145 liH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~ 224 (395)
|||+||||||||||+|++|||+||+|++||++.|||+||||+++||+.++.. ++++++.+++++..++.||++|+.+..
T Consensus 73 liH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~~ 151 (295)
T 3ipi_A 73 MMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLED 151 (295)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHCcCcCCCCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHccC
Confidence 9999999999999999999999999999999999999999999999999876 478999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcC
Q 016097 225 DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 304 (395)
Q Consensus 225 ~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~eg 304 (395)
+ .+++++|++++++|||+||++||++||+++|++++..+.+++||.++|+||||+||++||+++++ || |+.+|
T Consensus 152 ~-~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~g 224 (295)
T 3ipi_A 152 E-SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFT 224 (295)
T ss_dssp -----CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C----------
T ss_pred C-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccC
Confidence 5 37889999999999999999999999999999999999999999999999999999999999863 65 57899
Q ss_pred cccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 016097 305 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 384 (395)
Q Consensus 305 k~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L~ 384 (395)
|+|||++|+++..+ .+++++|++.+++|.++|++.|+.||+++ .++.|.
T Consensus 225 k~Tlp~l~al~~~~-------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~ 273 (295)
T 3ipi_A 225 SETLPHIYMKSTSK-------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLF 273 (295)
T ss_dssp -CCHHHHHTTTSCH-------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHH
T ss_pred cccHHHHHHHhcCc-------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHH
Confidence 99999999986532 24699999999999999999999999988 899999
Q ss_pred HHHHHHHhcc
Q 016097 385 DLTHRVITRN 394 (395)
Q Consensus 385 ~l~~~~~~R~ 394 (395)
+|+++++.|.
T Consensus 274 ~l~~~~~~~~ 283 (295)
T 3ipi_A 274 QITDYITVDM 283 (295)
T ss_dssp HHHHHTTGGG
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 37
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=9.6e-62 Score=468.13 Aligned_cols=265 Identities=26% Similarity=0.334 Sum_probs=232.7
Q ss_pred HHHHHHHHHHhhcc-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 016097 65 LSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 143 (395)
Q Consensus 65 l~~v~~~l~~~i~~-~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 143 (395)
.++|++.|.+.+.. .++.+.++++|.+..| |||+||.|++++++++|++. +.++.+|+++
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~av 75 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAV 75 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHH
Confidence 34566666666643 3568999999999888 99999999999999998631 2578999999
Q ss_pred HHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 016097 144 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMT 221 (395)
Q Consensus 144 EliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~ 221 (395)
||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++..+.++++.+++++..++.||++|+.
T Consensus 76 EliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~ 155 (284)
T 2ftz_A 76 ELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVE 155 (284)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999987778999999999999999999999
Q ss_pred ccCCC-CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccch
Q 016097 222 TSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSD 300 (395)
Q Consensus 222 ~~~~~-~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~D 300 (395)
+..+. ..++++|++++++|||+||+++|++|++++|++++ .+++||.++|+||||+||++|++++++.+|||+|+|
T Consensus 156 ~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 232 (284)
T 2ftz_A 156 FERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232 (284)
T ss_dssp HHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_pred hccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchh
Confidence 87665 78999999999999999999999999999998877 899999999999999999999999999999999999
Q ss_pred hhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH
Q 016097 301 IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 380 (395)
Q Consensus 301 l~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~ 380 (395)
|+ |+|||++++ ++++++.+++|.++|++.|+.||+ + .+
T Consensus 233 l~--K~T~p~l~~---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~-~------~~ 270 (284)
T 2ftz_A 233 TE--XVTLVXXVG---------------------------------IQXAREMADXYYEEVLXGIESEGL-F------RT 270 (284)
T ss_dssp ------CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHTTC-H------HH
T ss_pred cc--ccchHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCc-h------hH
Confidence 99 999999995 467889999999999999999997 5 78
Q ss_pred HH-HHHHHHHHHhc
Q 016097 381 RA-LLDLTHRVITR 393 (395)
Q Consensus 381 ~~-L~~l~~~~~~R 393 (395)
+. |.+|++++++|
T Consensus 271 ~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 271 LFLLXELXQMVEER 284 (284)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC
Confidence 88 99999999987
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=3.3e-59 Score=455.51 Aligned_cols=273 Identities=24% Similarity=0.292 Sum_probs=227.7
Q ss_pred HHHHHHHhhcc---CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHH
Q 016097 68 LAKRLRSMVVA---EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 144 (395)
Q Consensus 68 v~~~l~~~i~~---~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avE 144 (395)
|++.|.+.+.. .+|.+.++++|.+..| |||+||.|++++++++|++.. ..+..+.+..+|+++|
T Consensus 18 ve~~l~~~~~~~~~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiE 84 (311)
T 3llw_A 18 FESFLKNHHLHLESFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIE 84 (311)
T ss_dssp HHHHHHTCCCCCCSSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHH
Confidence 78888887753 5678999999999888 999999999999999986320 0122347899999999
Q ss_pred HHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHHH
Q 016097 145 MIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTG 215 (395)
Q Consensus 145 liH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~--~~~---~~v~~~~s~~--~~~l~~G 215 (395)
|||+|||||||| ||+|++|||+||+|++||+..|||+||+|+++||+.+++ ... .++++.++++ +..++.|
T Consensus 85 liH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~G 164 (311)
T 3llw_A 85 CLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILG 164 (311)
T ss_dssp HHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999987 332 2577888888 5799999
Q ss_pred HHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHhhhhhhhhcccCCccccC
Q 016097 216 ETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 294 (395)
Q Consensus 216 q~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~-~~l~~~G~~lG~afQI~DD~lD~~g~~~~~G 294 (395)
|.+|+.+. +...++++|++|+.+|||+||+++|++||+++|++++.. +.+++||.++|+||||+||++|++++++.+|
T Consensus 165 Q~lDl~~~-~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 243 (311)
T 3llw_A 165 QALDCYFE-NTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESG 243 (311)
T ss_dssp HHHHHHTT-TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHC
Confidence 99999887 356899999999999999999999999999999999888 9999999999999999999999999999999
Q ss_pred CCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 016097 295 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 374 (395)
Q Consensus 295 K~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~ 374 (395)
|+.++ ++||+|||++++ ++.+...++++.++|.+.|+.|+.-..
T Consensus 244 K~~g~--~~gK~T~p~l~~---------------------------------l~~a~~~~~~~~~~a~~~l~~~~~~~~- 287 (311)
T 3llw_A 244 KTTHL--DSAKNSFVNLLG---------------------------------LERANNYAQTLKTEVLNDLDALKPAYP- 287 (311)
T ss_dssp ---------CCSCHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHTTSTTTCH-
T ss_pred ccccc--ccCcchHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHhhhccccCc-
Confidence 99877 999999999995 466778999999999999999664221
Q ss_pred chHHH-HHHHHHHHHHHHhcc
Q 016097 375 DVTKS-RRALLDLTHRVITRN 394 (395)
Q Consensus 375 ~~~~~-~~~L~~l~~~~~~R~ 394 (395)
. .+.|.+|++++++|.
T Consensus 288 ----~~~~~l~~l~~~~~~r~ 304 (311)
T 3llw_A 288 ----LLQENLNALLNTLFKGE 304 (311)
T ss_dssp ----HHHHHHHHHHHHHHC--
T ss_pred ----cHHHHHHHHHHHHHhcc
Confidence 2 578999999999995
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=2.4e-59 Score=467.43 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=237.3
Q ss_pred hHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 016097 82 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 161 (395)
Q Consensus 82 ~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEliH~AsLiHDDIiD~s~ 161 (395)
++.++++|.+. | |||+||++++++++++++.... ..+.++.+|+||||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 47789999884 8 9999999999999999864321 123678899999999999999999999999
Q ss_pred CCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCHHH
Q 016097 162 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 232 (395)
Q Consensus 162 ~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-------~~v~~~~s~~~~~l~~Gq~~dl~~~~--~~~~s~~~ 232 (395)
+|||+||+|++||++.|||+||+|++.||.++....+ .++++.+++++..++.||.+|+.+.. +...+.++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999999987643 36889999999999999999997653 34567899
Q ss_pred HHHHHHhhHHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHH
Q 016097 233 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 309 (395)
Q Consensus 233 Y~~~~~~KTa~L-~~~a~~~ga~lag--~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlP 309 (395)
|++++.+|||.| |.+||.+|++++| ++++..+.+++||.++|+||||+||++||++ |||+|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7899999999998 5677788999999999999999999999985 8999999999999999
Q ss_pred HHHHhhhC-chHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH----H
Q 016097 310 ILFAMEEF-PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL----L 384 (395)
Q Consensus 310 vl~Al~~~-~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~~~~~~~L----~ 384 (395)
+++|++.. ++.++.+.+.+.... ..+.+++...+..+.+.+.++++.+++.+.++.+|++. .++.| .
T Consensus 278 ~i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~ 349 (368)
T 2q58_A 278 LQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIH 349 (368)
T ss_dssp HHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHH
Confidence 99999985 566777766655332 23444455556667778888899999999999999876 55554 4
Q ss_pred HHHHHHHhcc
Q 016097 385 DLTHRVITRN 394 (395)
Q Consensus 385 ~l~~~~~~R~ 394 (395)
.|++++++|+
T Consensus 350 kI~~~~~~rk 359 (368)
T 2q58_A 350 QISELITNSR 359 (368)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhh
Confidence 5556666664
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.2e-58 Score=447.69 Aligned_cols=266 Identities=24% Similarity=0.329 Sum_probs=220.7
Q ss_pred HHHHHHHHHhhc---cCchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHH
Q 016097 66 SILAKRLRSMVV---AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 142 (395)
Q Consensus 66 ~~v~~~l~~~i~---~~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~a 142 (395)
+.+++.|.+.+. +.+|.+.++++|.+..| |||+||.|++++++++|++. .+.+..+|++
T Consensus 7 ~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~a 68 (291)
T 3npk_A 7 ELFIHHLEKNLPKVESFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALA 68 (291)
T ss_dssp HHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHH
Confidence 345667766654 35678999999999888 99999999999999997531 1368899999
Q ss_pred HHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHHH
Q 016097 143 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLV 213 (395)
Q Consensus 143 vEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~-~----~~v~~~~s~~--~~~l~ 213 (395)
+||||+|||||||| ||+|++|||+||+|++||++.|||+||||+++||+.+++.. . .++++.++++ +..++
T Consensus 69 iEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~ 148 (291)
T 3npk_A 69 LEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMV 148 (291)
T ss_dssp HHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHH
T ss_pred HHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998754 2 3578888998 89999
Q ss_pred HHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCcccc
Q 016097 214 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 293 (395)
Q Consensus 214 ~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~ 293 (395)
.||.+|+.+.. ...++++|..|+++|||+||+++|++||+++|++++..+.+++||.++|+||||+||++|++++++.+
T Consensus 149 ~GQ~lDl~~~~-~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~ 227 (291)
T 3npk_A 149 IGQAIDCFFED-KRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQS 227 (291)
T ss_dssp HHHHHHHHTTT-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Confidence 99999998865 36799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 016097 294 GKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENND 373 (395)
Q Consensus 294 GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~~~~ 373 (395)
||+.+.| +||+|||+++++ +.+...++++.++|.+.|+.|+..
T Consensus 228 GK~~~~d--~gK~T~p~l~~l---------------------------------~~a~~~~~~~~~~a~~~l~~~~~~-- 270 (291)
T 3npk_A 228 GKPTNND--IHKNSFVNLLGL---------------------------------EQAIKTKENLLNECEQDLEKLNEK-- 270 (291)
T ss_dssp ------------CCHHHHHCH---------------------------------HHHHHHHHHHHHHHHHHHHTSCHH--
T ss_pred CCccchh--cCcchHHHHHHH---------------------------------HHhHHHHHHHHHHHHHHHHHhchh--
Confidence 9999876 999999999955 556678899999999999999642
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 016097 374 EDVTKSRRALLDLTHRVIT 392 (395)
Q Consensus 374 ~~~~~~~~~L~~l~~~~~~ 392 (395)
..+.|.+|+++.++
T Consensus 271 -----~~~~l~~la~~~~~ 284 (291)
T 3npk_A 271 -----LAQMIQNLIIQYLE 284 (291)
T ss_dssp -----HHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHHHh
Confidence 35789999988764
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=3.8e-58 Score=444.32 Aligned_cols=263 Identities=21% Similarity=0.257 Sum_probs=231.6
Q ss_pred HHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHH
Q 016097 61 VADELSILAKRLRSMVVA-EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 139 (395)
Q Consensus 61 i~~el~~v~~~l~~~i~~-~~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (395)
+.+-.+.|++.|.+.+.. .++.+.++++|++. | |||+||.|++++++++|++.. .+..+
T Consensus 15 ~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~ 74 (289)
T 2azj_A 15 WLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDIK-----------------DSYGG 74 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHH
T ss_pred HHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHH
Confidence 344445577777777764 46789999999998 9 999999999999999986421 46789
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHh
Q 016097 140 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGETM 218 (395)
Q Consensus 140 A~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l-~~~~~~~v~~~~s~~~~~l~~Gq~~ 218 (395)
|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+ +..+ +++++.+++++..++.||++
T Consensus 75 A~avEliH~asLIHDDi~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~ 153 (289)
T 2azj_A 75 ALAIEILHSASLALCDIVDLDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALR 153 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8765 58999999999999999999
Q ss_pred hhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCcc
Q 016097 219 QMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSL 298 (395)
Q Consensus 219 dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g 298 (395)
|+.+ +++|++++++|||+||++||++|++++ ++++..+.+++||.++|+||||+||++|++++ ||+
T Consensus 154 dl~~-------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~-- 219 (289)
T 2azj_A 154 DMYD-------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE-- 219 (289)
T ss_dssp TTTT-------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT--
T ss_pred HHhh-------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh--
Confidence 9975 578999999999999999999999999 99999999999999999999999999999996 565
Q ss_pred chhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC-CCCcchH
Q 016097 299 SDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE-NNDEDVT 377 (395)
Q Consensus 299 ~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~lp~-~~~~~~~ 377 (395)
|+++||.|+|+++ +... . +.+ .+..+++|.++|++.|+.||. ++
T Consensus 220 -dl~~gk~Tlp~l~--~~~g-~--------------~~a------------~~~~a~~~~~~A~~~L~~lp~~~~----- 264 (289)
T 2azj_A 220 -EIDGSAKQLFKYY--REGK-L--------------EEY------------VRSVYLEYKQKYDELISNIPFQSK----- 264 (289)
T ss_dssp -TCCTTGGGGHHHH--TTTC-H--------------HHH------------HHHHHHHHHHHHHHHHHTSCCCGG-----
T ss_pred -hhhcCcccHHHHH--HcCC-H--------------HHH------------HHHHHHHHHHHHHHHHHhCCCCcH-----
Confidence 8999999999999 2211 0 000 135899999999999999998 55
Q ss_pred HHHHHHHHHHHHHHhcc
Q 016097 378 KSRRALLDLTHRVITRN 394 (395)
Q Consensus 378 ~~~~~L~~l~~~~~~R~ 394 (395)
.++.|.+|++++++|.
T Consensus 265 -~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 265 -YLSEIRSLPEFLANGL 280 (289)
T ss_dssp -GHHHHHTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcc
Confidence 7899999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=1.2e-57 Score=442.09 Aligned_cols=267 Identities=31% Similarity=0.423 Sum_probs=232.7
Q ss_pred CchhHHHHHHHHHHHHHHHhhccCc-hhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAEV-PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~~-~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
|+-..+.++++.|++.|.+.+.... +.+.++++|.+..| |||+||.|++++++++|++. +
T Consensus 12 ~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~ 72 (293)
T 2j1p_A 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE-----------------S 72 (293)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH-----------------H
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------H
Confidence 3445777889999999999887654 57999999999888 99999999999999987531 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC-----CHHHH---HH
Q 016097 135 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVV---TL 204 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDI--iD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~-----~~~v~---~~ 204 (395)
.++.+|+++||||+|||||||| ||+|++|||+||+|.+||++.|||+||||+++||+.+++.. +..++ ..
T Consensus 73 ~~~~~A~avEliH~asLiHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~ 152 (293)
T 2j1p_A 73 LAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGE 152 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCchhccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHH
Confidence 5789999999999999999998 99999999999999999999999999999999999998753 23344 45
Q ss_pred HHHHH--HHHHHHHHhhhcccCC--CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhh
Q 016097 205 LATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 280 (395)
Q Consensus 205 ~s~~~--~~l~~Gq~~dl~~~~~--~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~ 280 (395)
+++++ ..++.||++|+.+..+ ...++++|+.|+++|||+||++||++|++++|++++..+.+++||.++|+||||+
T Consensus 153 l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~ 232 (293)
T 2j1p_A 153 LAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVV 232 (293)
T ss_dssp HHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 5799999999988654 3568899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 016097 281 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 360 (395)
Q Consensus 281 DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 360 (395)
||++|+++++ |.|+|+++ +++++++.+++|.++
T Consensus 233 DDiLD~~~~~--------------K~T~p~l~---------------------------------gle~a~~~a~~~~~~ 265 (293)
T 2j1p_A 233 DDILDVTKSS--------------KLTYPKLM---------------------------------GLEKSREFAEKLNTE 265 (293)
T ss_dssp HHHHHHHC----------------CCCHHHHH---------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHccCCc--------------cccHHHHH---------------------------------HHHHHHHHHHHHHHH
Confidence 9999999875 89999998 568999999999999
Q ss_pred HHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 016097 361 AAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 395 (395)
Q Consensus 361 A~~~L~~lp~~~~~~~~~~~~~L~~l~~~~~~R~~ 395 (395)
|++.|+.|| ++ .++.|..|++++++|++
T Consensus 266 A~~~L~~l~-~~------~~~~L~~l~~~~~~R~~ 293 (293)
T 2j1p_A 266 ARDQLLGFD-SD------KVAPLLALANYIANRQN 293 (293)
T ss_dssp HHHHTTTSC-TT------TTHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCC-cH------HHHHHHHHHHHHHhhcC
Confidence 999999998 34 56889999999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=9.8e-54 Score=410.87 Aligned_cols=221 Identities=29% Similarity=0.385 Sum_probs=194.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhccC-chhHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHH
Q 016097 56 DPFSLVADELSILAKRLRSMVVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 134 (395)
Q Consensus 56 ~~~~~i~~el~~v~~~l~~~i~~~-~~~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (395)
.....+.++++.|++.|++.+.+. +|.+.++++|++..| |||+||.|++++++++|+... ..+
T Consensus 5 ~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~~~ 68 (285)
T 4fp4_A 5 SLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------MDP 68 (285)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------GCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------ChH
Confidence 345789999999999999999987 889999999999988 999999999999999976210 013
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 016097 135 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 214 (395)
Q Consensus 135 ~~~~lA~avEliH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~ 214 (395)
.+..+|+++||||+||||||||||+|++|||+||+|.+||++.|||+||||+++||+.+++.++ ++++.+++++..++.
T Consensus 69 ~~~~~A~aiEliH~aSLIHDDImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~ 147 (285)
T 4fp4_A 69 RILEAAAIVELLHVVSLLQDDVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSV 147 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999998764 999999999999999
Q ss_pred HHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccC
Q 016097 215 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 294 (395)
Q Consensus 215 Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~G 294 (395)
||++|+.+..+. ++++|||+||++||++|++++|++ +..+.+++||.++|+||||+||++||+++++ +|
T Consensus 148 GQ~lDl~~~~~~---------~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~ 216 (285)
T 4fp4_A 148 GQALDLEGERDK---------AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ET 216 (285)
T ss_dssp HHHHHHTTCHHH---------HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HH
T ss_pred hHHHHHhccccc---------hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-cc
Confidence 999999876431 999999999999999999999999 8889999999999999999999999999876 68
Q ss_pred CCccchhhcC
Q 016097 295 KGSLSDIRHG 304 (395)
Q Consensus 295 K~~g~Dl~eg 304 (395)
|+.|+||+++
T Consensus 217 k~~g~DI~e~ 226 (285)
T 4fp4_A 217 KSIANEIGRY 226 (285)
T ss_dssp HHHHHHHHHH
T ss_pred CccHHHHHHH
Confidence 8899999999
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=5.7e-49 Score=377.63 Aligned_cols=199 Identities=13% Similarity=0.169 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhhccCchh-HHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHH
Q 016097 65 LSILAKRLRSMVVAEVPK-LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEIT 143 (395)
Q Consensus 65 l~~v~~~l~~~i~~~~~~-l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~av 143 (395)
-..|++.|.+.+....|. |.++++|++..| |||+||.|++++++++|++.. ++..+|+++
T Consensus 9 ~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~ai 69 (274)
T 3kra_B 9 EADIERYLKKSITIRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAAAAAI 69 (274)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHHHHHH
T ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHH
Confidence 334668888888887775 999999999888 999999999999999987432 578999999
Q ss_pred HHHHHHHHhccCCC-CCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCCH-------HHHHH---HHHHH--H
Q 016097 144 EMIHVASLLHDDVL-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LATVV--E 210 (395)
Q Consensus 144 EliH~AsLiHDDIi-D~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~~-------~v~~~---~s~~~--~ 210 (395)
||||+||||||||+ |+++.|||+||+|++||+++|||+||||+++||+.+++..++ .+++. +++++ .
T Consensus 70 EliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~ 149 (274)
T 3kra_B 70 HLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPE 149 (274)
T ss_dssp HHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHH
Confidence 99999999999998 666789999999999999999999999999999999987542 34444 45555 6
Q ss_pred HHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 016097 211 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 283 (395)
Q Consensus 211 ~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~ 283 (395)
.++.||++|+.+..+ ..++++|++|+++|||+||+++|++||+++|++++.++.+++||.++|+||||+||.
T Consensus 150 ~~~~GQ~lDl~~~~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 150 GMISGLHREEEIVDG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp THHHHHHHHTTCCTT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999998765 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=6.4e-48 Score=370.27 Aligned_cols=195 Identities=12% Similarity=0.152 Sum_probs=170.0
Q ss_pred HHHHHHHHhhccCch-hHHHHHHHHHhCCCCCCccHHHHHHHHHHHcCCCCCCCCCCCchhhHhHHHHHHHHHHHHHHHH
Q 016097 67 ILAKRLRSMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEM 145 (395)
Q Consensus 67 ~v~~~l~~~i~~~~~-~l~~~~~~~~~~g~~GKr~Rp~l~ll~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~lA~avEl 145 (395)
.+++.|.+.+....| .+.++++|++..| |||+||.||+++++++|++.. +++.+|+++||
T Consensus 16 ~i~~~L~~~~~~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~aiEl 76 (273)
T 3qkc_B 16 DIESYLKKAIPIRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMAAAAAVHL 76 (273)
T ss_dssp HHHHHHHHHSCCCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHHHHHHHHH
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHH
Confidence 356888888887767 4999999999888 999999999999999987432 57899999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH---HHHH--HHHHH
Q 016097 146 IHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV--EHLVT 214 (395)
Q Consensus 146 iH~AsLiHDDIiD~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~------~~v~~~~---s~~~--~~l~~ 214 (395)
||+||||||||+|+|+ |||+||+|++||+++|||+||||+++||+.+++..+ .++++.+ ++++ ..++.
T Consensus 77 iH~aSLIHDDI~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~ 155 (273)
T 3qkc_B 77 MHVAAYTHENLPLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVE 155 (273)
T ss_dssp HHHHHHHHHSCCBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCcccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHH
Confidence 9999999999999998 999999999999999999999999999999987543 3444444 4454 67899
Q ss_pred HHHhhhcccCCCCCCHHHHHH-HHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016097 215 GETMQMTTSSDQRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 284 (395)
Q Consensus 215 Gq~~dl~~~~~~~~s~~~Y~~-~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~l 284 (395)
||++|+.+.. ..+. +|++ ++++|||+||++||++||+++|++++..+.+++||.++|+||||+||++
T Consensus 156 GQ~lDl~~~~--~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 156 GQYHELGLNQ--LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp HHHHHTTCCS--SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCC--CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998842 3454 5655 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=95.97 E-value=0.49 Score=44.90 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 016097 209 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 288 (395)
Q Consensus 209 ~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g 288 (395)
+..+..|..+|+... ...|++++..-+++-.|+...+.+. +++..+++. ..++.++|+|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~~----~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDER----ARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHHH----HHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHHH----HHHHHHHHHHHHHHHHHHhc--
Confidence 567889999998754 2357888777666655554444333 334445443 45688999999999988886
Q ss_pred CccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 016097 289 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 368 (395)
Q Consensus 289 ~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~~l 368 (395)
+.|++.|++-+|.=..-+..-...++. ....+ ..+..++ ..-...++.|.++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~-~~~~~-~~~~~~~---------~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIR-ARRAT-DGVRRCI---------ALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHH-TTCCC-HHHHHHH---------HHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHh-cCCCC-HHHHHHH---------HHHHHHHHHHHHHHHHHHHhC
Confidence 467888999888755333221122222 22112 2222222 333466778888888888888
Q ss_pred CCC
Q 016097 369 PEN 371 (395)
Q Consensus 369 p~~ 371 (395)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 743
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=94.60 E-value=0.76 Score=43.44 Aligned_cols=136 Identities=12% Similarity=-0.009 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 016097 207 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 286 (395)
Q Consensus 207 ~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~ 286 (395)
+.+..++.|..+|+... .-.|++++..-+++--|+...+.+.+ ++..+. +.....+.++|.|+|+.|=+.|+
T Consensus 108 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~---~~~~~~A~~lG~AlQltNilRDv 179 (293)
T 3acx_A 108 QSFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPI---LSDHET---HQTYDVARRLGESLQLINILRDV 179 (293)
T ss_dssp HHHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCC---HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888643 23478888887777766665555543 233331 23557899999999999977776
Q ss_pred cCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 016097 287 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 366 (395)
Q Consensus 287 ~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~A~~~L~ 366 (395)
+.|++.|++-+|.=..-+..-...++.. ...+ ..+..+ +..-...++.|..+|...+.
T Consensus 180 -----------~eD~~~gR~YLP~d~l~~~gv~~e~l~~-~~~~-~~~~~~---------~~~l~~~A~~~~~~a~~~~~ 237 (293)
T 3acx_A 180 -----------GEDFENERIYFSKQRLKQYEVDIAEVYQ-NGVN-NHYIDL---------WEYYAAIAEKDFRDVMDQIK 237 (293)
T ss_dssp -----------HHHHHTTCCCSCHHHHHHHTCCHHHHHH-HCCC-HHHHHH---------HHHHHHHHHHHHHHHHHTGG
T ss_pred -----------HHHHhCCcEEeCHHHHHHcCCCHHHhcc-cCCC-HHHHHH---------HHHHHHHHHHHHHHHHHhHH
Confidence 4678889999987543322211222222 1112 122222 33445778899999999999
Q ss_pred cCCCCC
Q 016097 367 SLPENN 372 (395)
Q Consensus 367 ~lp~~~ 372 (395)
.+|...
T Consensus 238 ~lp~~~ 243 (293)
T 3acx_A 238 VFSIEA 243 (293)
T ss_dssp GSCTTH
T ss_pred hCCHHH
Confidence 998743
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=94.32 E-value=0.43 Score=46.41 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhh
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 280 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~ 280 (395)
....+.+.+..+..|-.+++.. ...+++++..-+++--|+...+.+.+-+.-...++. .......+.++|.|||+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 3445566777788888888752 345888888888887777766666665433222332 334567899999999999
Q ss_pred hhhhcccCCccccCCCccchhhcCcccHHHHHHhhhCchHHHHHHcccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 016097 281 DDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANL 360 (395)
Q Consensus 281 DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~Al~~~~~~~~~l~~~~~~~~~~~~i~~li~~sg~i~~a~~~a~~~~~~ 360 (395)
|=+.|+ +.|+..|++-+|.=..-+..-...++. .+..-..+..+ +..-...++.|..+
T Consensus 188 NilRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~~------l~~l~~~A~~~~~~ 245 (343)
T 3vj8_A 188 NIIRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQC------LNELITNALHHIPD 245 (343)
T ss_dssp HHHHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHHH------HHHHHHHHHTTHHH
T ss_pred HHHHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHHH------HHHHHHHHHHHHHH
Confidence 988776 567888999888754222110000111 11112222222 34445777888888
Q ss_pred HHHHhccCCCC
Q 016097 361 AAAAIDSLPEN 371 (395)
Q Consensus 361 A~~~L~~lp~~ 371 (395)
|...+..+|..
T Consensus 246 a~~~~~~L~~~ 256 (343)
T 3vj8_A 246 VITYLSRLRNQ 256 (343)
T ss_dssp HHHHHHTCCCH
T ss_pred HHHHHHhCCcc
Confidence 88888888764
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=82.13 E-value=2.6 Score=35.34 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 016097 178 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMT 221 (395)
Q Consensus 178 AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~ 221 (395)
-||+|||+-+..+.+|+..+....+..+++++..+.+....-+.
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~~ 115 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRAT 115 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55999999999999999988999999999999999888776554
No 50
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=80.08 E-value=45 Score=32.26 Aligned_cols=95 Identities=7% Similarity=-0.046 Sum_probs=63.5
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHc-CCCHHHHH--HHH
Q 016097 193 LASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLA-GQTAEVAI--LAF 267 (395)
Q Consensus 193 l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a-~~~ga~la-g~~~~~~~--~l~ 267 (395)
+.....+.....+.+.+..++.+-..+..+.. ...+++++|+++-..-+|..+..+ +..+ ++ ..+++..+ .+.
T Consensus 170 ~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~--~g~~l~~~~~~~p~~~ 247 (382)
T 3kb9_A 170 LYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS--SGCELPDAVRKHPAYR 247 (382)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH--HTCCCCHHHHTSHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH--cCCCCCHHHHhChHHH
Confidence 33333567788889999999999998877643 346799999998665555533322 1122 12 23444332 456
Q ss_pred HHHHHHHHHhhhhhhhhcccCC
Q 016097 268 DYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 268 ~~G~~lG~afQI~DD~lD~~g~ 289 (395)
++-...+...-+.||+..|..+
T Consensus 248 ~l~~~~~~i~rL~NDi~S~~kE 269 (382)
T 3kb9_A 248 RAALLSQEFAAWYNDLCSLPKE 269 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999998644
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=78.61 E-value=26 Score=34.84 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=62.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCHHHHH--H
Q 016097 191 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--L 265 (395)
Q Consensus 191 ~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag--~~~~~~~--~ 265 (395)
..+.....+.....+.+.+..++.+-+.+..|.. ....++++|+++ +..||.....++ .....| .++++.+ .
T Consensus 246 ~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~ 322 (433)
T 3v1v_A 246 GYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPD 322 (433)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCch
Confidence 3343344566778888888999999888877743 346799999996 445554322211 112223 3444433 4
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCC
Q 016097 266 AFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 266 l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
+.++-...+...-+.||+..|..+
T Consensus 323 ~~~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 323 MQRVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH
Confidence 566778888888999999999654
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=69.34 E-value=60 Score=33.37 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc-C--CCHHHHHHH---HHHHH
Q 016097 199 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEVAILA---FDYGK 271 (395)
Q Consensus 199 ~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~la-g--~~~~~~~~l---~~~G~ 271 (395)
..++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|..+... .+.++ | .+.+..+.+ .++-+
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~---~~~~~mg~~lt~e~~e~~~~~p~i~~ 441 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI---TSFVGMGDIVTPETFKWAASDPKIIQ 441 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH---HHHHTSCTTSCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH---HHHHhcCCCCCHHHHHhccccHHHHH
Confidence 35778888899999999999988853 446899999998766665543221 22222 3 456665554 36778
Q ss_pred HHHHHhhhhhhhhcccCC
Q 016097 272 NLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 272 ~lG~afQI~DD~lD~~g~ 289 (395)
..+...-+.||+..+-.+
T Consensus 442 ~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 442 ASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcccchhhhh
Confidence 889999999999998654
No 53
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=64.11 E-value=71 Score=32.77 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHH
Q 016097 199 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDYGKN 272 (395)
Q Consensus 199 ~~v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~la-g-~~~~~~~~l---~~~G~~ 272 (395)
..++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|.....+.. .++ . .+.+..+.+ -++-+.
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 34677788889999999999888853 44689999999876666654322211 233 2 455555543 356778
Q ss_pred HHHHhhhhhhhhcccCC
Q 016097 273 LGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 273 lG~afQI~DD~lD~~g~ 289 (395)
.+...-+.||+..+..+
T Consensus 438 ~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 438 SVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHSHHHH
T ss_pred HhhhheeeccchhHHHH
Confidence 88899999999998543
No 54
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=63.46 E-value=55 Score=33.61 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 275 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG~ 275 (395)
++..+.+++..++.+-+.+..|.. ...+|+++|++...--+|..+......- .++. .+.+..+.+ -++-+..++
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~-~mg~~lt~e~~e~~~~~p~i~~~~~~ 443 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYF-AVVQNIKKEEIENLQKYHDIISRPSH 443 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHH-HHCSSCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHH-hcCCCCCHHHHHhcccchHHHHHHHH
Confidence 456677788889999888888753 4568999999987666655332221111 1122 456655543 356777888
Q ss_pred HhhhhhhhhcccCC
Q 016097 276 AYQLIDDVLDFTGT 289 (395)
Q Consensus 276 afQI~DD~lD~~g~ 289 (395)
..-+.||+..+-.+
T Consensus 444 i~RL~NDi~S~~~E 457 (555)
T 3n0f_A 444 IFRLCNDLASASAE 457 (555)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhh
Confidence 89999999998543
No 55
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=51.29 E-value=1.5e+02 Score=27.42 Aligned_cols=99 Identities=9% Similarity=-0.097 Sum_probs=61.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcccCC-CCC-CHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH--HH
Q 016097 191 VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LA 266 (395)
Q Consensus 191 ~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl~~~~~-~~~-s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~--~l 266 (395)
..+.....+.....+.+.+..++.+-..+..+... ..+ ++++|+++-..-.|..+..++..-++=-..+++..+ .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~ 204 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVM 204 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHH
Confidence 34444445677788889999999999988777543 356 899999876555554433222111111123444332 45
Q ss_pred HHHHHHHHHHhhhhhhhhcccCC
Q 016097 267 FDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 267 ~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
.++-...+...-+.||+..|-.+
T Consensus 205 ~~l~~~~~~i~rL~NDl~S~~kE 227 (337)
T 1ps1_A 205 SAMLQIAVDVNLLLNDIASLEKE 227 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 56777888889999999999644
No 56
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=47.68 E-value=1.7e+02 Score=27.16 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=30.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 256 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 256 ag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.|.+++....+...-.-+=.++-|.||+.|= +|+|.|++|+=..|
T Consensus 40 ~~~~~~~~~~~A~avEliH~asLiHDDi~D~------------s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 40 LKVPEDKLQIIIEVTEMLHNASLLIDDIEDN------------SKLRRGFPVAHSIY 84 (301)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT------------CSEETTEECHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHccccCC------------CCCCCCCcchhhcc
Confidence 3555554555566666677788999999762 45788888876555
No 57
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=47.05 E-value=1.7e+02 Score=26.58 Aligned_cols=66 Identities=6% Similarity=0.036 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCc
Q 016097 225 DQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTS 290 (395)
Q Consensus 225 ~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~ 290 (395)
...+++++|+++-..-+|..+...+..-++=-..+++..+.+.++-...+...-+.||+..|-.+.
T Consensus 149 ~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE~ 214 (300)
T 1di1_A 149 LSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKEE 214 (300)
T ss_dssp CCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 346799999997666666543332222211123567777788889999999999999999996553
No 58
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=46.80 E-value=2.5e+02 Score=28.54 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 275 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~~-~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG~ 275 (395)
++..+.+++..++.+-..+..|... ..+|+++|++....-+|.........- .++. .+.+..+.+ -++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~-~~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFF-RVTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHH-HHSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHH-HcCCCCCHHHHHHhcccHHHHHHHHH
Confidence 5566777888888888888777543 357999999876555554322221111 1222 455544432 356667788
Q ss_pred HhhhhhhhhcccCC
Q 016097 276 AYQLIDDVLDFTGT 289 (395)
Q Consensus 276 afQI~DD~lD~~g~ 289 (395)
..-+.||+..+-.+
T Consensus 435 i~RL~NDi~S~~~E 448 (543)
T 2ong_A 435 VLRLADDLGTSVEE 448 (543)
T ss_dssp HHHHHHHHHSSHHH
T ss_pred HHHHhcccchhhhc
Confidence 88899999888543
No 59
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=45.10 E-value=1.1e+02 Score=29.00 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHHH
Q 016097 257 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 313 (395)
Q Consensus 257 g~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~A 313 (395)
|.+.+....+...-.-+=.++-|.||+.|= +|+|.|++|+-..|-
T Consensus 63 g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 63 GAVTPATLHAAVSLELLHTASLVHDDVVDE------------STERRGQLSVNAIFN 107 (334)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhcC
Confidence 444444445556667778899999999762 567888888877664
No 60
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=43.07 E-value=1.6e+02 Score=27.96 Aligned_cols=52 Identities=31% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 249 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 249 ~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
|.+++.+.|.+.+....+...-.-+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 61 ~l~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 61 TLAAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE------------SRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC------------CCCcCCCccHHHhc
Confidence 33344444554444445566667777899999999662 46778888876554
No 61
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=41.42 E-value=37 Score=32.37 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
...+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++
T Consensus 233 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 233 IKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33455666777888899999966 346778888888888888888888888888888888775
No 62
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=40.45 E-value=1.5e+02 Score=30.17 Aligned_cols=102 Identities=16% Similarity=0.029 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHc-C--CCHHH-HHH---HHHHHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEV-AIL---AFDYGKN 272 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~la-g--~~~~~-~~~---l~~~G~~ 272 (395)
++..+.+++..++.+-..+..|.. ...+|+++|++....-+|..... +.+.++ | .+.+. .+. ..++-+.
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~---~~~~~~~g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII---SPTYFTFANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH---HHHHTTSTTCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH---HHHHHHcCCCCcHHHHHhhhcccHHHHHH
Confidence 456667778888888887777643 34579999999765554442221 122221 2 34444 333 3456777
Q ss_pred HHHHhhhhhhhhcccCCccccCCCccchhhcCcc-cHHHHHHhhh
Q 016097 273 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAMEE 316 (395)
Q Consensus 273 lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~-TlPvl~Al~~ 316 (395)
.++..-+.||+..+-.+. ..|.. +...+|..+.
T Consensus 439 ~~~i~RL~NDi~S~~~E~-----------~rG~v~n~V~cyMke~ 472 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFEL-----------ARGDVPKTIQCYMKET 472 (549)
T ss_dssp HHHHHHHHHHHC--------------------CCCCHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhh-----------ccCCccHHHHHHHHHc
Confidence 888899999998886543 23443 6666665443
No 63
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=40.18 E-value=29 Score=33.06 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
...+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 204 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 204 LAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33456666777888999999976 356788888988888888888888888888888887764
No 64
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=39.81 E-value=29 Score=32.83 Aligned_cols=79 Identities=27% Similarity=0.275 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVT 203 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-~~v~~ 203 (395)
..+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...|--...-++..|...|..++. .+.+.
T Consensus 206 ~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 285 (304)
T 3lsn_A 206 KALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPLR 285 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455666778888999999987 5688999999999999999988888899999988888763 23333
Q ss_pred HHHH-HHHHHHHH
Q 016097 204 LLAT-VVEHLVTG 215 (395)
Q Consensus 204 ~~s~-~~~~l~~G 215 (395)
.+++ .+.+..+|
T Consensus 286 ~l~~~~~~R~~~~ 298 (304)
T 3lsn_A 286 ELARYIVERRSEG 298 (304)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHhcccc
Confidence 3333 23444444
No 65
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=39.64 E-value=1.6e+02 Score=27.44 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 259 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 259 ~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
+.+....+...-+-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD~------------s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMDQ------------HDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCCC------------CCCCCCCCcHHHhc
Confidence 3344445555667777899999999662 46788888876665
No 66
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=37.73 E-value=2.4e+02 Score=25.79 Aligned_cols=64 Identities=5% Similarity=0.054 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 016097 226 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 226 ~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~ 289 (395)
..+++++|+.+-..-+|..+..+...-++=-..+++..+...++-...+...-+.||+..|-.+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4679999998877766654433222211111356777777888889999999999999999654
No 67
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=37.54 E-value=93 Score=29.13 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 138 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
.+...-+.+=.|.=|.||+.| .++.+.|++|+=..+|...|--...-++..|...|..++
T Consensus 200 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 200 PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556677788889999988 346788888988889988888888888888888887765
No 68
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=36.64 E-value=1.1e+02 Score=29.37 Aligned_cols=50 Identities=20% Similarity=0.040 Sum_probs=33.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 251 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 251 ~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
+++.+.|.+++....+...-.-+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 64 l~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 64 LSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 344444555554445555666777889999999772 45678888876655
No 69
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=36.54 E-value=3e+02 Score=26.51 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=82.8
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCccccc--Ch--hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 016097 145 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GN--KLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 220 (395)
Q Consensus 145 liH~AsLiHDDIiD~s~~RRG~pt~~~~~--G~--~~AIl~GD~Lla~a~~~l~~~~~~~v~~~~s~~~~~l~~Gq~~dl 220 (395)
...++..+.||+.|++... ....+..+ |. +..++. .+...+..+.+...+.....|.+.+.+...|...+.
T Consensus 91 d~~~~~F~lDD~~d~~~~~--l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYPT--MVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHHH--HTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHHH--HHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788899999875311 11111111 00 001111 122233444555567777888888888888988875
Q ss_pred cccCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCcccc
Q 016097 221 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 293 (395)
Q Consensus 221 ~~~~~~~~s~~~Y~~~~~~KTa~L~~~a~~~ga~lag-~~------~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~ 293 (395)
.+ ....++.++|...-+.+||..-.. .+.++.. .- ++....+..+...+ =..||++-|..+....
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~E~~---~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~~ 237 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLGHCV---GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDDE 237 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCHHHH---HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCS
T ss_pred hc-cCCCCCHHHHHHHHHhhccHHHHH---HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhcc
Confidence 54 444557889999889999973111 1111111 11 22444444444433 3468999886543211
Q ss_pred CCCccchhhcCcccHHHHHHhhhC
Q 016097 294 GKGSLSDIRHGIITAPILFAMEEF 317 (395)
Q Consensus 294 GK~~g~Dl~egk~TlPvl~Al~~~ 317 (395)
| | ..+++.+++....
T Consensus 238 G-----d----~~NlV~vl~~~~g 252 (374)
T 1yyq_A 238 R-----D----QISLVKNYVVSDE 252 (374)
T ss_dssp S-----C----CCCHHHHHHHHHT
T ss_pred C-----C----ccchhhhehhcCC
Confidence 1 1 3467777766543
No 70
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=36.20 E-value=1.2e+02 Score=32.65 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHHH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 271 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L~--~~a~~~ga~lag-~~~~~~~~l~-----~~G~ 271 (395)
++..+-++...++.+-..+..|.. ...+|+++|++...--+|.-. ...+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 455667778888888888877643 346899999998665555422 2222222 121 4566665554 6677
Q ss_pred HHHHHhhhhhhhhcccCC
Q 016097 272 NLGLAYQLIDDVLDFTGT 289 (395)
Q Consensus 272 ~lG~afQI~DD~lD~~g~ 289 (395)
..+...-+.||+..|..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888888999999998654
No 71
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=34.52 E-value=1.5e+02 Score=31.64 Aligned_cols=87 Identities=7% Similarity=0.017 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC-CCCCCHHHHHHHHHhhHHHH-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 016097 201 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 274 (395)
Q Consensus 201 v~~~~s~~~~~l~~Gq~~dl~~~~-~~~~s~~~Y~~~~~~KTa~L-~~~a~~~ga~lag-~~~~~~~~l---~~~G~~lG 274 (395)
++..+.++...++.+-..+..|.. ...+|+++|++...--+|.- +...+..+ ++. .+.+..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 456677788888888888877643 34689999999866655553 22222222 121 345555444 45677788
Q ss_pred HHhhhhhhhhcccCC
Q 016097 275 LAYQLIDDVLDFTGT 289 (395)
Q Consensus 275 ~afQI~DD~lD~~g~ 289 (395)
...-+.||+..|..+
T Consensus 645 ~I~RL~NDi~S~k~E 659 (764)
T 3p5p_A 645 LSWRLTNDTKTYQAE 659 (764)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHHH
Confidence 888999999998543
No 72
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=33.74 E-value=1.3e+02 Score=28.86 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=24.0
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 252 IALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 252 ga~lag-~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
++.+.| .+.+....+...-.-+=.+.-|.||+.|= +|+|.|++|+-..|
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD~------------s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMDE------------ASMRRGVPSANARW 134 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcCC------------CCCCCCCCcHHhhc
Confidence 334444 44444444555566677789999999772 45677887776555
No 73
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=32.40 E-value=2.9e+02 Score=25.45 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=31.2
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhhhh--hcccCCccccCCCccchhhcCcccHHHHH
Q 016097 255 LAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 255 lag~~~~~~~~l~~~G~~lG~afQI~DD~--lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
..|.+++..-.+...-+-+=.+.-|.||+ .|= +|+|.|++|+=..|
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~------------s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 60 DLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN------------ADFRRGXPSCHRTY 107 (284)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC------------CSEETTEECHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC------------CCCCCCCccHHhhc
Confidence 33555554444555556667788899999 872 46788888877666
No 74
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=32.24 E-value=45 Score=31.44 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcC
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 196 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~ 196 (395)
...+...-+.+=.|.=|.||+.| .++.+.|++|+=..+|...|--.-.-+...|...|..+
T Consensus 208 ~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 208 IGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666777788889999976 24567777787777777777766666677776666554
No 75
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=30.87 E-value=77 Score=29.96 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC-HHHHH
Q 016097 137 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVT 203 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~-~~v~~ 203 (395)
..+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...|--...-+...|...|..++. ...+.
T Consensus 213 ~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~ 292 (313)
T 3lom_A 213 SALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAALI 292 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHH
Confidence 3455666777788899999966 3467889999999999999988888888888888877653 33333
Q ss_pred HHHH
Q 016097 204 LLAT 207 (395)
Q Consensus 204 ~~s~ 207 (395)
.+++
T Consensus 293 ~la~ 296 (313)
T 3lom_A 293 ELTK 296 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
No 76
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=30.74 E-value=42 Score=31.61 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 138 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 138 ~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
.+...-+.+=.|.=|.||+.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 213 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 213 HLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455556677788889999866 346678888888888888888888888888888888765
No 77
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=30.06 E-value=38 Score=31.87 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
...+...-+.+=.|.=|.||+.| .++.+.|++|+=..+|...|--..+-+..+|...|..+.
T Consensus 200 ~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 200 KEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33455556677788889999987 467788888887777777777777777777777777653
No 78
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=29.88 E-value=51 Score=31.54 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCC
Q 016097 136 QQCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 197 (395)
Q Consensus 136 ~~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~ 197 (395)
...+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...+.-.-+-+..+|...|..++
T Consensus 244 ~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 244 RQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33455666777888889999976 245677888887778877776667777777776666553
No 79
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=29.82 E-value=65 Score=30.67 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHcCCC
Q 016097 137 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 198 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~~~~ 198 (395)
..+...-+.+=.|.=|.|||.| .++.+.|++|+=..+|...|--...-++..|...|..++.
T Consensus 212 ~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 212 DRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3455666777788889999966 3467888999988999998888888888888888887753
No 80
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=28.54 E-value=1.6e+02 Score=27.71 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 252 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 252 ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
++.+.|.+.+..-.+...-.-+=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAF 103 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHT
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCccccc
Confidence 3333344434334455555666778899999977 245677877765544
No 81
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.06 E-value=2e+02 Score=26.69 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 261 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 261 ~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
+....+...-.-+=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhc
Confidence 3333445555566678889999977 246788888876655
No 82
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=25.04 E-value=3.9e+02 Score=25.17 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=29.7
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 255 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 255 lag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
..|.+++....+...-.-+=.|+=|.||+.|= +|+|.|++|+-..|
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN------------APLRRGQTTSHLIF 99 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCccccC------------CCCCCCCcchhhcc
Confidence 33555554445555556666788899999762 45777888765544
No 83
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=24.67 E-value=2.4e+02 Score=26.94 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 259 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 259 ~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
+.+....+...-.-+=.++-|.||+.|= +|+|.|++|+=..|
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIIDR------------GDVRRGLPTVRKAF 104 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHTT------------CCEETTEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCccccC------------CCCcCCCccHHHhc
Confidence 3333334555556677889999999762 46788888876665
No 84
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=24.34 E-value=2.4e+02 Score=26.70 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 258 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 258 ~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.+.+....+...-.-+=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTY 115 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHc
Confidence 4666555666666777889999999976 246788888876655
No 85
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.18 E-value=1.1e+02 Score=28.88 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCC------------CCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHc
Q 016097 137 QCIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 195 (395)
Q Consensus 137 ~~lA~avEliH~AsLiHDDIiD------------~s~~RRG~pt~~~~~G~~~AIl~GD~Lla~a~~~l~~ 195 (395)
..+...-+.+=.|.=|.||+.| .++.+.|++|+=..+|...|--.-.-++..|...|..
T Consensus 208 ~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 208 PAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455556677788889999976 3567888888888888777766666677777666665
No 86
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=20.04 E-value=2.3e+02 Score=26.97 Aligned_cols=37 Identities=30% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 016097 249 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 285 (395)
Q Consensus 249 ~~~ga~lag~~~~~~~~l~~~G~~lG~afQI~DD~lD 285 (395)
|.+++.+.|.+.+....+...-.-+=.++-|.||+.|
T Consensus 73 ~ll~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 73 TVAAARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 3334444455544444555666777789999999977
No 87
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=20.00 E-value=2.7e+02 Score=26.21 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhhhhhcccCCccccCCCccchhhcCcccHHHHH
Q 016097 256 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 312 (395)
Q Consensus 256 ag~~~~~~~~l~~~G~~lG~afQI~DD~lD~~g~~~~~GK~~g~Dl~egk~TlPvl~ 312 (395)
.|.+++....+...-.-+=.++-|.||+.| .+|+|.|++|+=..|
T Consensus 61 ~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 61 VGGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIW 105 (342)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCcccccc
Confidence 344444334455555666778899999977 246778888876655
Done!