Query 016099
Match_columns 395
No_of_seqs 275 out of 633
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 2.7E-51 9.2E-56 415.4 17.1 244 106-393 82-381 (391)
2 2k1a_A Integrin alpha-IIB; sin 33.6 22 0.00077 24.3 2.1 20 29-48 7-26 (42)
3 2fy7_A Beta-1,4-galactosyltran 33.3 3E+02 0.01 25.5 12.3 108 78-205 33-146 (287)
4 2knc_A Integrin alpha-IIB; tra 32.9 22 0.00077 25.6 2.1 21 29-49 9-29 (54)
5 2l8s_A Integrin alpha-1; trans 32.2 32 0.0011 24.9 2.7 22 28-49 5-26 (54)
6 2lk9_A Bone marrow stromal ant 22.4 48 0.0016 21.6 1.9 23 29-51 4-26 (35)
7 3arc_M Photosystem II reaction 14.4 93 0.0032 20.6 2.0 18 34-51 11-28 (36)
8 3hd7_B Syntaxin-1A; membrane p 10.5 82 0.0028 25.4 0.9 22 27-48 81-102 (109)
9 3ukw_C Bimax1 peptide; arm rep 10.4 76 0.0026 19.2 0.5 10 21-31 2-11 (28)
10 3arc_J Photosystem II reaction 10.1 2.3E+02 0.0079 19.0 2.8 25 28-52 6-31 (40)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=2.7e-51 Score=415.38 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=196.3
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHhhc-cCCCceEEEEeCCCCCCC-------ccceeeeeccC--CCccccCcchHHHH
Q 016099 106 KNPKVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPMH-------VSRYFVGRDIR--SEKVAWGRISMLDA 175 (395)
Q Consensus 106 ~~~KiAfLfLt~~~l~l~~Lwe~ff~~-~~~~~sIYVHvD~k~~~~-------~s~vF~~r~Ip--s~~V~WG~~SlV~A 175 (395)
..+|||||||+||+. +.|++++++ .++.+.||||+|++++.. ..+.|.+..|. +..|.||++|||+|
T Consensus 82 ~~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A 158 (391)
T 2gak_A 82 VGFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKA 158 (391)
T ss_dssp HTSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHH
T ss_pred cCCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHH
Confidence 358999999999976 577888875 467788999999998631 23345566653 68999999999999
Q ss_pred HHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceeeccCCCCCCCCCccc----------------c
Q 016099 176 EKRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPHGNGRYSE----------------H 237 (395)
Q Consensus 176 elrLL~~AL~d-~~n~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~p~p~~~~Ry~~----------------~ 237 (395)
|++||++||++ .+|+|||||||+|+||+++++|++||+. .++|||++..+++.. .+|+.. +
T Consensus 159 ~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~-~~R~~~~~~~~~~~l~~~~~~k~ 237 (391)
T 2gak_A 159 DLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK-EERWKKRYAVVDGKLTNTGIVKA 237 (391)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG-SHHHHEEEEEETTEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc-ccceEeeeeccccceeeeccccc
Confidence 99999999985 5999999999999999999999999997 899999999865432 223221 1
Q ss_pred cCccccccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhcccC-CCC----------C
Q 016099 238 MLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMID-PAG----------I 306 (395)
Q Consensus 238 mlp~i~~~~~rkGSQWfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~~-~~~----------i 306 (395)
++|. ..+|++|||||+|||++|++|++|.. .++|.++|+ ++|+|||||||||+.+.+ ++. .
T Consensus 238 ~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~ 309 (391)
T 2gak_A 238 PPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSD 309 (391)
T ss_dssp CCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCT
T ss_pred CCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----CCcCCchhHHHHHhhccCCCCcccccccccccc
Confidence 2232 46899999999999999999999965 578888887 579999999999997753 322 2
Q ss_pred CCCceEEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHhhccccccccccccccccccccccCCCCCC
Q 016099 307 ANWSVTHADWS-------EGKWHPK----------AYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRP 369 (395)
Q Consensus 307 ~n~~lryIDWs-------~g~~hP~----------~~~~~Di~~e~L~~ir~~~~~~~~~~~~~~~~~~~~c~yng~~~~ 369 (395)
.|+++|||||+ +|++||. +|+.+|+ +.|++ +
T Consensus 310 ~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~---------------------------s 357 (391)
T 2gak_A 310 MNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLR---------------------------Q 357 (391)
T ss_dssp TTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTT---------------------------S
T ss_pred ccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHh---------------------------C
Confidence 47899999997 3556887 7888885 45654 2
Q ss_pred cceEEecCCcchHHHHHHhhhhcc
Q 016099 370 CYLFARKFNPEALDKLVFLFVNYT 393 (395)
Q Consensus 370 c~LFARKF~~~~~~~Ll~l~~~~~ 393 (395)
++||||||++++++.+++.++++.
T Consensus 358 ~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 358 HHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred CCceEEccCCccCHHHHHHHHHHH
Confidence 699999999999999999888653
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.57 E-value=22 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHHHhhc
Q 016099 29 KRPIWIIAFVTFFIIFLTGV 48 (395)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (395)
.-|.||+++.++..+.+++.
T Consensus 7 ~vp~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 45899988877776665554
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=33.32 E-value=3e+02 Score=25.54 Aligned_cols=108 Identities=15% Similarity=0.046 Sum_probs=63.5
Q ss_pred CCCCCCChHHHHhhhh-hhh-hccCCCCCCCCCcEEEEEEcCCC-CChHHHHHHHh---hccCCCceEEEEeCCCCCCCc
Q 016099 78 TPTRELTDAENIAQVV-FKE-ILNKPPVHSKNPKVAFMFLTPGN-LPFENLWEKFF---HGHEDRFSVYVHASSEKPMHV 151 (395)
Q Consensus 78 ~~~~~~~d~e~~~~~~-~~~-~~~~~~~~~~~~KiAfLfLt~~~-l~l~~Lwe~ff---~~~~~~~sIYVHvD~k~~~~~ 151 (395)
....+++-+|+..... +.+ ..-.|+.-...++|+.+|-+++. ..|....+.+. +.....+.|+|=-| ..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d--- 108 (287)
T 2fy7_A 33 EFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD--- 108 (287)
T ss_dssp CCCSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS---
T ss_pred cccCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC---
Confidence 3345778888875432 111 11122222346899999999776 45777777766 34455677775222 111
Q ss_pred cceeeeeccCCCccccCcchHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 016099 152 SRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNF 205 (395)
Q Consensus 152 s~vF~~r~Ips~~V~WG~~SlV~AelrLL~~AL~d~~n~yfvLLSgsdiPL~s~ 205 (395)
++++...|.-..+..|+.....+|++++-+.|+|....
T Consensus 109 ----------------~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 109 ----------------TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp ----------------SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred ----------------CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 11223333333444555556779999999999998774
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.88 E-value=22 Score=25.63 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHHhhcc
Q 016099 29 KRPIWIIAFVTFFIIFLTGVY 49 (395)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~ 49 (395)
.-|.||+++.++..+.+++..
T Consensus 9 ~vp~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 458999887777665555433
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.23 E-value=32 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=15.0
Q ss_pred CCCchhHHHHHHHHHHHHhhcc
Q 016099 28 LKRPIWIIAFVTFFIIFLTGVY 49 (395)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (395)
..-|.||+++.++..+.+++..
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Li 26 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLL 26 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHH
Confidence 3568999888777666555543
No 6
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=22.37 E-value=48 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=16.5
Q ss_pred CCchhHHHHHHHHHHHHhhcccc
Q 016099 29 KRPIWIIAFVTFFIIFLTGVYVY 51 (395)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (395)
|-|.|+.+++.++++.+..+.||
T Consensus 4 KL~lg~Gvl~LLviV~LgV~LI~ 26 (35)
T 2lk9_A 4 KLLLGIGILVLLIIVILGVPLII 26 (35)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecccHHHHHHHHHhcchheE
Confidence 56789999999888776655543
No 7
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=14.40 E-value=93 Score=20.56 Aligned_cols=18 Identities=33% Similarity=0.395 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhcccc
Q 016099 34 IIAFVTFFIIFLTGVYVY 51 (395)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (395)
.+++++++.+|++..|+=
T Consensus 11 t~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 11 TALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 456778889999999874
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=10.45 E-value=82 Score=25.40 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=12.2
Q ss_pred CCCCchhHHHHHHHHHHHHhhc
Q 016099 27 HLKRPIWIIAFVTFFIIFLTGV 48 (395)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (395)
+.+|.+|++++++++.+.+++.
T Consensus 81 ~~rkk~~i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 81 KARRKKIMIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcceehHHHHHHHHHHHHH
Confidence 3445677776655555444443
No 9
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=10.39 E-value=76 Score=19.22 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=2.1
Q ss_pred cccCCCCCCCc
Q 016099 21 YRQQRPHLKRP 31 (395)
Q Consensus 21 ~~~~~~~~~~~ 31 (395)
+| .|.+.|||
T Consensus 2 sr-rrrprkrp 11 (28)
T 3ukw_C 2 SR-RRRPRKRP 11 (28)
T ss_dssp ------CCCCC
T ss_pred cc-ccccccCC
Confidence 44 33344443
No 10
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=10.06 E-value=2.3e+02 Score=19.04 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=15.6
Q ss_pred CCCchhHHHHHHHH-HHHHhhccccc
Q 016099 28 LKRPIWIIAFVTFF-IIFLTGVYVYP 52 (395)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 52 (395)
-|-|.|++..+..+ .+.+++.+.|-
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyG 31 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYG 31 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEeeeeehhhhhhheeeEEEee
Confidence 46799998776654 34555555543
Done!