Query 016099
Match_columns 395
No_of_seqs 275 out of 633
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 07:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016099.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016099hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 50.8 54 0.0039 26.6 10.5 109 108-220 1-122 (255)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 22.7 27 0.0019 21.1 2.3 24 29-52 1-25 (34)
3 d1c9fa_ d.15.2.1 (A:) Caspase- 11.9 31 0.0023 25.4 0.9 13 285-298 55-67 (87)
4 d1r5la1 a.5.3.1 (A:25-90) Alph 11.2 20 0.0015 24.7 -0.5 18 371-388 31-48 (66)
5 d1ibxa_ d.15.2.1 (A:) Caspase- 10.8 36 0.0026 24.7 0.8 14 285-299 52-65 (81)
6 d2qalc1 d.52.3.1 (C:1-105) Rib 10.7 59 0.0043 24.3 2.1 29 250-278 18-46 (105)
7 d1f3ka_ g.3.6.1 (A:) Conotoxin 9.8 58 0.0042 18.0 1.3 16 57-72 4-19 (26)
8 d1olma1 a.5.3.1 (A:1-75) Super 9.4 26 0.0019 24.4 -0.5 17 371-387 41-57 (75)
9 d1n26a2 b.1.2.1 (A:94-195) Int 9.3 40 0.0029 25.4 0.6 22 359-380 18-44 (102)
10 d1d4ta_ d.93.1.1 (A:) The Xlp 9.0 97 0.0071 21.9 2.8 22 162-183 3-24 (104)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=50.82 E-value=54 Score=26.65 Aligned_cols=109 Identities=9% Similarity=0.102 Sum_probs=63.7
Q ss_pred CcEEEEEEcCCC-CChHHHHHHHhhccCCCceEEEEeCCCCCCCc---cceee---eeccCCCcccc----CcchHHHHH
Q 016099 108 PKVAFMFLTPGN-LPFENLWEKFFHGHEDRFSVYVHASSEKPMHV---SRYFV---GRDIRSEKVAW----GRISMLDAE 176 (395)
Q Consensus 108 ~KiAfLfLt~~~-l~l~~Lwe~ff~~~~~~~sIYVHvD~k~~~~~---s~vF~---~r~Ips~~V~W----G~~SlV~Ae 176 (395)
|||+.++-|++. .-+++.++.+.......+.|+|.-|...+... .+... .+-+....+.+ ...+.-.|-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~ 80 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccc
Confidence 789999999754 55888888888777778999999886543100 00000 00011111111 233444444
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc-CCccce
Q 016099 177 KRLLAHALLDPDNQQFVLLSDSCIPLHN-FDYVYNYLMY-TNVSYV 220 (395)
Q Consensus 177 lrLL~~AL~d~~n~yfvLLSgsdiPL~s-~~~I~~~L~~-~~~sFI 220 (395)
-.+++.| +.+|+++|-..|++..+ .+.+.+++.. .+..++
T Consensus 81 N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 81 NQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred ccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 4445544 56899999999998655 3344455544 455555
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.72 E-value=27 Score=21.13 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=15.0
Q ss_pred CCchhHHHHHHHHH-HHHhhccccc
Q 016099 29 KRPIWIIAFVTFFI-IFLTGVYVYP 52 (395)
Q Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~~~~ 52 (395)
|-|.|++..+..+. +.+++.+.|-
T Consensus 1 riPLWlv~tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 1 RIPLWIVATVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeeehhhhhhHhheeeeeee
Confidence 35899988776553 4555555553
No 3
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.94 E-value=31 Score=25.36 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=10.1
Q ss_pred CccccCccchhhhh
Q 016099 285 RNCYADEHYLPTLF 298 (395)
Q Consensus 285 ~tc~pDE~yf~TlL 298 (395)
.|.+ ||.|||||=
T Consensus 55 GT~V-dEeYF~tLp 67 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLP 67 (87)
T ss_dssp TCCB-CTTSCSSCC
T ss_pred CcEe-cHHHHhcCC
Confidence 4566 889999985
No 4
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=20 Score=24.72 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.4
Q ss_pred ceEEecCCcchHHHHHHh
Q 016099 371 YLFARKFNPEALDKLVFL 388 (395)
Q Consensus 371 ~LFARKF~~~~~~~Ll~l 388 (395)
||-||||+.+....+++-
T Consensus 31 FLRarkf~~~ka~~~l~~ 48 (66)
T d1r5la1 31 FLRARDFDLDLAWRLLKN 48 (66)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 899999999887766543
No 5
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.80 E-value=36 Score=24.69 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.4
Q ss_pred CccccCccchhhhhc
Q 016099 285 RNCYADEHYLPTLFH 299 (395)
Q Consensus 285 ~tc~pDE~yf~TlL~ 299 (395)
-|.+ ||.|||||=.
T Consensus 52 GT~V-~EeYF~tLp~ 65 (81)
T d1ibxa_ 52 GTEL-TEDYFPSVPD 65 (81)
T ss_dssp CSCC-CSSSCSSCCS
T ss_pred CcEe-eHHHHhcCCC
Confidence 4556 8889999853
No 6
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.66 E-value=59 Score=24.35 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.7
Q ss_pred ccceeeecHHHHHHHHhChHHHHHHHhhc
Q 016099 250 GSQWFTLKRQHAMIIMADSLYYTKFKHYC 278 (395)
Q Consensus 250 GSQWfsLtR~~a~~Iv~d~~~~~~F~~~c 278 (395)
.|.||+=.++.+++|.+|........+++
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKEL 46 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988765555543
No 7
>d1f3ka_ g.3.6.1 (A:) Conotoxin {Conus textile, Tx VII [TaxId: 6494]}
Probab=9.80 E-value=58 Score=18.03 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.4
Q ss_pred CCCccccccCCCcccc
Q 016099 57 SLASCYFFSGRGCTML 72 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (395)
.-.||++||-.-|.++
T Consensus 4 adepcdvfsldcctgi 19 (26)
T d1f3ka_ 4 ADEPCDVFSLDCCTGI 19 (26)
T ss_dssp TTCCCCSSSCCSTTSC
T ss_pred cCCCccEEEEecccce
Confidence 3468999998888765
No 8
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.44 E-value=26 Score=24.40 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=13.9
Q ss_pred ceEEecCCcchHHHHHH
Q 016099 371 YLFARKFNPEALDKLVF 387 (395)
Q Consensus 371 ~LFARKF~~~~~~~Ll~ 387 (395)
||-||||+.+.....+.
T Consensus 41 FLrAr~fdv~kA~~ml~ 57 (75)
T d1olma1 41 WLRARSFDLQKSEAMLR 57 (75)
T ss_dssp HHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHH
Confidence 78999999988776654
No 9
>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.32 E-value=40 Score=25.35 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=16.6
Q ss_pred cccccCCCC-----CCcceEEecCCcc
Q 016099 359 MPCMWNGMK-----RPCYLFARKFNPE 380 (395)
Q Consensus 359 ~~c~yng~~-----~~c~LFARKF~~~ 380 (395)
-.|.|..+. ..|+|+.|||-.+
T Consensus 18 v~CEW~p~~~psp~t~avLlvRkf~~~ 44 (102)
T d1n26a2 18 VVCEWGPRSTPSLTTKAVLLVRKFQNS 44 (102)
T ss_dssp EEEEECCSSCCCTTCEEEEEEEEESSS
T ss_pred ceeeecCCCCCCCCceEEEEEEeccCC
Confidence 358887763 4699999999654
No 10
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.99 E-value=97 Score=21.94 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=18.4
Q ss_pred CCccccCcchHHHHHHHHHHHH
Q 016099 162 SEKVAWGRISMLDAEKRLLAHA 183 (395)
Q Consensus 162 s~~V~WG~~SlV~AelrLL~~A 183 (395)
+.+-+||.+|.-+||..|.+..
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~~ 24 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLATG 24 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHHC
T ss_pred cCCccccCCCHHHHHHHHhhCC
Confidence 4577899999999999887653
Done!