Query 016100
Match_columns 395
No_of_seqs 180 out of 759
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674 Calreticulin [Posttran 100.0 6E-125 1E-129 914.4 27.3 353 1-356 1-358 (406)
2 PF00262 Calreticulin: Calreti 100.0 6E-116 1E-120 876.5 13.4 312 19-331 1-367 (367)
3 KOG0675 Calnexin [Posttranslat 100.0 4E-106 9E-111 819.0 25.3 334 21-356 43-439 (558)
4 KOG0674 Calreticulin [Posttran 100.0 2.8E-40 6E-45 322.5 10.9 281 4-323 9-353 (406)
5 PF00262 Calreticulin: Calreti 100.0 4.6E-34 1E-38 286.7 -1.4 193 92-290 115-340 (367)
6 KOG0675 Calnexin [Posttranslat 99.9 2.5E-24 5.4E-29 221.0 12.1 203 93-299 159-395 (558)
7 PF15240 Pro-rich: Proline-ric 35.4 20 0.00042 34.0 1.3 17 2-18 1-17 (179)
8 PLN03161 Probable xyloglucan e 29.3 6.1E+02 0.013 25.8 10.7 25 165-190 141-165 (291)
9 PF06439 DUF1080: Domain of Un 28.2 4.1E+02 0.0089 23.3 10.7 26 165-191 127-152 (185)
10 PF10262 Rdx: Rdx family; Int 24.4 75 0.0016 25.2 2.7 22 170-191 35-56 (76)
No 1
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-125 Score=914.39 Aligned_cols=353 Identities=53% Similarity=1.051 Sum_probs=339.0
Q ss_pred ChHH--HHHHHHHhhccceeeeeecccC--cCcccCeeeCCcccCCCCCCcEEeecCcccCCCC-CceeeeCcccchhhh
Q 016100 1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75 (395)
Q Consensus 1 m~~~--~~~~~~~~~~~~~~~~F~E~F~--~~w~~~W~~S~~~k~~~~~G~~~~~~g~~~g~~~-d~gL~~~~~ar~yai 75 (395)
||++ ++|||++.+++++.|||.|.|. ++|..||++|++++. ..|.|.+++|+|+|++. |+||+|+++||||||
T Consensus 1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~ 78 (406)
T KOG0674|consen 1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI 78 (406)
T ss_pred CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence 6666 5677777788889999999995 579999999999853 68999999999999988 999999999999999
Q ss_pred hcCCCCCCCCCCceEEEEEEEeecccccCCceeEEecccccccccCCCCCceeeecCCccCCCCceEEEEEeeCCCcccc
Q 016100 76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI 155 (395)
Q Consensus 76 S~kl~~~~~~~k~LVvQYeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~tpY~ImFGPD~Cg~~~~kvHfIl~~~~~~~~~ 155 (395)
|++|++|+|++++|||||+||++|.|+||||||||++.++||.+|+++|||.||||||+||++|+|||+||+|+++||+|
T Consensus 79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli 158 (406)
T KOG0674|consen 79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI 158 (406)
T ss_pred ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCccceeeEEECCCCceEEEecceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 016100 156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235 (395)
Q Consensus 156 k~~~~~~~d~ltHlYTLIl~pdntyei~IDg~~~~~Gsl~~dwd~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWd 235 (395)
++.++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+||+++++|+||+++||++|+
T Consensus 159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe 238 (406)
T KOG0674|consen 159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE 238 (406)
T ss_pred ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccCCCCCCCCCCccccCCcceEEE
Q 016100 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315 (395)
Q Consensus 236 d~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~vG~ 315 (395)
.|++||||+|+||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|+||.|.+++.+|.+.+|++|||
T Consensus 239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgl 317 (406)
T KOG0674|consen 239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGL 317 (406)
T ss_pred -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeee
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeccCceeeeeeecCCHHHHHHHHHHhhhhhHHHHHHH
Q 016100 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREEAQRAR 356 (395)
Q Consensus 316 elW~~~~g~~fDNI~i~~d~~~A~~~~~~t~~~k~~~~~~~ 356 (395)
+||||+||+||||||||+|+++|+.++++||+.-+.++.++
T Consensus 318 dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~ 358 (406)
T KOG0674|consen 318 DLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEM 358 (406)
T ss_pred eEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHh
Confidence 99999999999999999999999999999999654444443
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=5.8e-116 Score=876.51 Aligned_cols=312 Identities=53% Similarity=1.023 Sum_probs=234.5
Q ss_pred eeeecccCcC--cccCeeeCCcccCC---CCCCcEEeecCccc-CCCCCceeeeCcccchhhhhcCC-CCCCCCCCceEE
Q 016100 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (395)
Q Consensus 19 ~~F~E~F~~~--w~~~W~~S~~~k~~---~~~G~~~~~~g~~~-g~~~d~gL~~~~~ar~yaiS~kl-~~~~~~~k~LVv 91 (395)
|||+|+|++. |.+||++|++++.+ .+.|+|.+++|+++ +..+|+||||+++|||||||++| +||++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 6899999875 99999999999864 56899999999776 55679999999999999999999 589999999999
Q ss_pred EEEEEeecccccCCceeEEeccccccc-ccCCCCCceeeecCCccCCCCceEEEEEeeCC-------CccccccCCcccC
Q 016100 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-------QNYPIKKELECET 163 (395)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~~~d~~-~f~~~tpY~ImFGPD~Cg~~~~kvHfIl~~~~-------~~~~~k~~~~~~~ 163 (395)
|||||||++|+|||||||||+.+.++. +|+++|||+||||||+|| .+++|||||||++ .+|+.+.+..+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988887 999999999999999999 7777999998742 2344455667789
Q ss_pred CCccceeeEEECCCCceEEEecceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC------
Q 016100 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (395)
Q Consensus 164 d~ltHlYTLIl~pdntyei~IDg~~~~~Gsl~~dwd--~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWd------ 235 (395)
|++||||||||+|||||||+|||+++.+|||++||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCccCCCC
Q 016100 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (395)
Q Consensus 236 --------------d~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP------------------~ykG~W~p~~I~NP~ 283 (395)
++|++||||+|+||+|||+++||+|+||||+|| +|||+|+||+|+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 679999999999999999999999999999999 999999999999999
Q ss_pred CCCCCCCcccCCCCCCCCCCccccCCcceEEEEeeeeccCceeeeeee
Q 016100 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILI 331 (395)
Q Consensus 284 YkG~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~~fDNI~i 331 (395)
|+|+|+||+|+||+|+++.+++.+.+|++||||||||++|++||||||
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-106 Score=818.97 Aligned_cols=334 Identities=41% Similarity=0.790 Sum_probs=299.9
Q ss_pred eecccCcC--cccCeeeCCcccCC------CCCCcEEeecCcccCCCCCceeeeCcccchhhhhcCC-CCCCCCCCceEE
Q 016100 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI-PEFSNKNRTLVV 91 (395)
Q Consensus 21 F~E~F~~~--w~~~W~~S~~~k~~------~~~G~~~~~~g~~~g~~~d~gL~~~~~ar~yaiS~kl-~~~~~~~k~LVv 91 (395)
|.|+|+.+ |. |||.|.++|++ .+.|.|.+..++-.+.++|+|||+++.|||||||+.| .||.++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 56678753 45 89999998753 2357888877665567889999999999999999999 689999999999
Q ss_pred EEEEEeecccccCCceeEEecc---cccccccCCCCCceeeecCCccCCCCceEEEEEeeC-CCc-----cccccCCc--
Q 016100 92 QYSIRFEQDIECGGGYIKLLSA---YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQ-GQN-----YPIKKELE-- 160 (395)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~---~~d~~~f~~~tpY~ImFGPD~Cg~~~~kvHfIl~~~-~~~-----~~~k~~~~-- 160 (395)
||||+||++++|||||||||+. ..++++|+++|||+||||||+|| .+++|||||||. +.+ ++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 9999999999999999999998 36789999999999999999999 999999999995 333 44456554
Q ss_pred --ccCCCccceeeEEECCCCceEEEecceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 016100 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (395)
Q Consensus 161 --~~~d~ltHlYTLIl~pdntyei~IDg~~~~~Gsl~~dwd--~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWdd 236 (395)
..+|++||||||||+|||||+|||||++|..|||++||. ++||++|+||+|.||+|||+|+.||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 567999999999999999999999999999999999995 8999999999999999999999999999999999994
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCC
Q 016100 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLW-------------------KPPKIPNPAYKGPWRPK 277 (395)
Q Consensus 237 --------------------~p~~I~dP~~~kP~dwd~~~~G~W-------------------~~p~I~NP~ykG~W~p~ 277 (395)
+|.+|+||+|+||+|||++++|+| +||||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 588999999999999999877655 55667788899999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCCCCccccCCcceEEEEeeeeccCceeeeeeecCCHHHHHHHHHHhhhhhHHHHHHH
Q 016100 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREEAQRAR 356 (395)
Q Consensus 278 ~I~NP~YkG~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~~fDNI~i~~d~~~A~~~~~~t~~~k~~~~~~~ 356 (395)
||+||+|+|+|+||+|+||+|+++.+++.+.+|.+||+|+|+|+++++|||||||+|++.|+.+++.||.+|..|++..
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996555444
No 4
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=322.54 Aligned_cols=281 Identities=30% Similarity=0.477 Sum_probs=235.2
Q ss_pred HHHHHHHH-hhccceeeee--ecccCcCcccCeeeC-CcccCCCCCCcEEeecCcccC-----CCCCceeeeCcccchhh
Q 016100 4 KLLVLFLF-FQISVSEIFF--EERFDDGWRSRWVIS-DWKRSEGKAGYFKHTAGKWHG-----DPDDKGIQTHTDARHYA 74 (395)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~F--~E~F~~~w~~~W~~S-~~~k~~~~~G~~~~~~g~~~g-----~~~d~gL~~~~~ar~ya 74 (395)
.||+++++ ++.++++..| .+.|..+|.++-..| .++++..++|+|...+.+..| +.+++++ +|+|..
T Consensus 9 ~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~----sa~F~~ 84 (406)
T KOG0674|consen 9 CLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI----SAKFKP 84 (406)
T ss_pred HHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeee----eccccc
Confidence 34444444 4467888888 899999998665566 888888889999876654443 4568888 999999
Q ss_pred hhcCCC----CCCCCC-------CceEE---------------EEEEEeecccccCCceeEEecccccccccCCCCCcee
Q 016100 75 ISAKIP----EFSNKN-------RTLVV---------------QYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSL 128 (395)
Q Consensus 75 iS~kl~----~~~~~~-------k~LVv---------------QYeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~tpY~I 128 (395)
+|++.+ +|++++ +.+|. ||+|||+++| ||.+..|+|.+ + +|++ .+++
T Consensus 85 FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDI-CG~~tkKVhvi-l---~ykg--~nhl 157 (406)
T KOG0674|consen 85 FSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDI-CGFGTKKVHVI-L---NYKG--KNHL 157 (406)
T ss_pred ccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcc-cCCCCceEEEE-E---eccc--ccch
Confidence 999986 467764 56666 9999999999 99999999998 6 7877 6899
Q ss_pred eecCCccCCCCceEEE---EEeeCCCccccccCC-cccCCCccceeeEEECCCCceEEEecceeecCCCCCCCCCCCCCc
Q 016100 129 MFGPDICGTQKKHLHV---ILSYQGQNYPIKKEL-ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPR 204 (395)
Q Consensus 129 mFGPD~Cg~~~~kvHf---Il~~~~~~~~~k~~~-~~~~d~ltHlYTLIl~pdntyei~IDg~~~~~Gsl~~dwd~~~p~ 204 (395)
+-.-.+|. ++..+|| ||| ++.+|+++++. .+.+++|...|.|+....-+ ..+.+.++|||. ..
T Consensus 158 ikK~i~Ck-~D~~tHlYTlIlR-Pd~TYeVkIDn~~~esGsle~DWdll~~KKik---------dP~a~KPedWDe--r~ 224 (406)
T KOG0674|consen 158 IKKDIRCK-DDELTHLYTLILR-PDATYEVKIDNQQVESGSLEDDWDLLPPKKIK---------DPDAKKPEDWDE--RE 224 (406)
T ss_pred hccccccc-cCCcceeEEEEec-CCCeeEEEEcccccccCccccccccccccccC---------CccccCcccchh--hc
Confidence 99999998 7777777 888 88999999988 56999999999998765421 456789999998 68
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 016100 205 KIKAVNAKKPADWDDREYIDDPNAVKPEGYDS------IPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKR 278 (395)
Q Consensus 205 ~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWdd------~p~~I~dP~~~kP~dwd~~~~G~W~~p~I~NP~ykG~W~p~~ 278 (395)
.|+||+|+||+||+-+++||||+++||+|||+ +++|||||.++ |+|+|..|.||+|||.|.+|+
T Consensus 225 ~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~----------gewkPkqi~np~yKg~w~hp~ 294 (406)
T KOG0674|consen 225 YIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYK----------GEWKPKQIKNPAYKGKWIHPE 294 (406)
T ss_pred cCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCcccc----------CccCcccccCccccceeeccc
Confidence 99999999999999999999999999999997 58999999998 999999999999999999999
Q ss_pred cCCCCCCCC----------------CC---CcccCCCCCCCCCCccccCCcceEEEEeeeeccC
Q 016100 279 IKNPNYKGK----------------WK---IPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAG 323 (395)
Q Consensus 279 I~NP~YkG~----------------W~---p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g 323 (395)
|.||.|... |+ ..+++|-..+.|+++ ...+|-|+|...++
T Consensus 295 i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~ey-----A~k~~~eTwg~~k~ 353 (406)
T KOG0674|consen 295 IDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEY-----AEKFANETWGKTKD 353 (406)
T ss_pred cCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHH-----HHHHHHhhhccccc
Confidence 999999765 65 677888888888766 45678899986554
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.97 E-value=4.6e-34 Score=286.75 Aligned_cols=193 Identities=33% Similarity=0.567 Sum_probs=99.8
Q ss_pred EEEEEeecccccCCceeEEecccc---cccccCCCCCceeeecCCccCCCCceEEE---EEeeCCCccccccCC-cccCC
Q 016100 92 QYSIRFEQDIECGGGYIKLLSAYV---NQKKFGGDAPYSLMFGPDICGTQKKHLHV---ILSYQGQNYPIKKEL-ECETD 164 (395)
Q Consensus 92 QYeVk~~~~i~CGGaYiKLl~~~~---d~~~f~~~tpY~ImFGPD~Cg~~~~kvHf---Il~~~~~~~~~k~~~-~~~~d 164 (395)
.|+|||++++ ||.... +|-+ + ++..-. ...+++..-|-.|. .+..+|+ ||| ++++|+|+.+. .+.++
T Consensus 115 pY~IMFGPD~-CG~~~k-vHfI-~~~~nP~~~~-~~e~~l~~~p~~~~-~D~~tHlYTLii~-~dntyeI~IDg~~~~~G 188 (367)
T PF00262_consen 115 PYSIMFGPDK-CGSSNK-VHFI-FRHKNPITGE-IEEKHLKKPPISCF-TDKLTHLYTLIIR-PDNTYEIRIDGEVVKSG 188 (367)
T ss_dssp -ESEEEEEEE-ESTTEE-EEEE-EEEE-TTTEE-TTEEEE-SSSSB-H-HSSSEEEEEEEEE-TTTEEEEEETTEEEEEE
T ss_pred CceEEeCCcc-CCCCce-EEEE-EEecCCCCCc-ccceecccCCcccc-cCCCcceEEEEEc-CCCeEEEEECCEEeecc
Confidence 8999999999 999777 8877 4 222111 12467788888896 7788888 788 66699998887 45667
Q ss_pred Cccceee--EEE-----CCCCc-eEEEecceee--cCCCCCCCCCCCCCccccCCCCCCCCCCCC--CcccCCCCCCCCC
Q 016100 165 KLTHFYT--FIL-----RPDAS-YSILIDNRER--DSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPE 232 (395)
Q Consensus 165 ~ltHlYT--LIl-----~pdnt-yei~IDg~~~--~~Gsl~~dwd~~~p~~I~Dp~d~KP~DW~d--~~~I~Dp~~~KP~ 232 (395)
+|...+. |+. .|+.. =+=.+|-+.+ .+...++|||...|.+|+||++.||++|++ +++|+||+|+||+
T Consensus 189 ~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~ 268 (367)
T PF00262_consen 189 SLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPE 268 (367)
T ss_dssp EHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-T
T ss_pred ccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCC
Confidence 7777777 322 23211 1111222111 233455555555555555555555555555 5899999999999
Q ss_pred CCCC------CCCCCCCCCCCCCC--CC------CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 016100 233 GYDS------IPKEIPDPKAKKPD--NW------DEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKI 290 (395)
Q Consensus 233 dWdd------~p~~I~dP~~~kP~--dw------d~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p 290 (395)
|||+ ++++|+||.|..+- -| |.++.|+|+||||+||+|+|+|+|++|+||+|...=.|
T Consensus 269 dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p 340 (367)
T PF00262_consen 269 DWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNP 340 (367)
T ss_dssp T--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--SSTTT
T ss_pred CCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCccccccccccccCCCcccCCCCc
Confidence 9997 58999999888721 23 66889999999999999999999999999999987433
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.5e-24 Score=220.99 Aligned_cols=203 Identities=28% Similarity=0.467 Sum_probs=133.1
Q ss_pred EEEEeecccccCCceeEEecccccccccCCC-CCceeeecCCc--cCCCCceEEE---EEeeCCCccccccCCc-ccCCC
Q 016100 93 YSIRFEQDIECGGGYIKLLSAYVNQKKFGGD-APYSLMFGPDI--CGTQKKHLHV---ILSYQGQNYPIKKELE-CETDK 165 (395)
Q Consensus 93 YeVk~~~~i~CGGaYiKLl~~~~d~~~f~~~-tpY~ImFGPD~--Cg~~~~kvHf---Il~~~~~~~~~k~~~~-~~~d~ 165 (395)
|++||+++- || +-.|+|-+-..-.-.+++ +.++.-+=|-. -.+.++++|+ |++ +.++++|..+.. +..+.
T Consensus 159 y~ImFGPDK-CG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~-pd~sfeI~vDg~vv~~G~ 235 (558)
T KOG0675|consen 159 YTIMFGPDK-CG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLK-PDNTFEIRVDGKVVYKGS 235 (558)
T ss_pred eEEEeCccc-cC-CcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEec-CCCeEEEEecCcEEEecc
Confidence 999999999 99 566777661111112222 12333333331 2335667777 666 556666654432 11221
Q ss_pred ccceeeE-------EECCCC-ceEEEeccee--ecCCCCCCCCCCCCCccccCCCCCCCCCCCCC--cccCCCCCCCCCC
Q 016100 166 LTHFYTF-------ILRPDA-SYSILIDNRE--RDSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEG 233 (395)
Q Consensus 166 ltHlYTL-------Il~pdn-tyei~IDg~~--~~~Gsl~~dwd~~~p~~I~Dp~d~KP~DW~d~--~~I~Dp~~~KP~d 233 (395)
+-..++- |-+|++ .++=+-+-.. ..+..+++|||...|.+|+|+++.||++|.+. ++|+||+|+||+|
T Consensus 236 ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPed 315 (558)
T KOG0675|consen 236 LLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPED 315 (558)
T ss_pred cccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCC
Confidence 1111111 112211 1111111111 23456889999999999999999999999985 5999999999999
Q ss_pred CCC------CCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccCCCCC
Q 016100 234 YDS------IPKEIPDPKAKK---------PDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEF 298 (395)
Q Consensus 234 Wdd------~p~~I~dP~~~k---------P~dwd~~~~G~W~~p~I~NP~ykG~W~p~~I~NP~YkG~W~p~~I~NP~y 298 (395)
||+ ++++|-||.|.+ |-.=|..+.|.|.+|||.||+|+|.|+||.|+||+|...= +|.+-+|-|
T Consensus 316 Wdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~-~p~~~~pIs 394 (558)
T KOG0675|consen 316 WDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDD-KPFTLTPIS 394 (558)
T ss_pred CCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCccccccc-Ccccccchh
Confidence 997 588999999985 3334788999999999999999999999999999999883 444556655
Q ss_pred C
Q 016100 299 E 299 (395)
Q Consensus 299 ~ 299 (395)
-
T Consensus 395 a 395 (558)
T KOG0675|consen 395 A 395 (558)
T ss_pred h
Confidence 4
No 7
>PF15240 Pro-rich: Proline-rich
Probab=35.44 E-value=20 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=9.6
Q ss_pred hHHHHHHHHHhhcccee
Q 016100 2 MLKLLVLFLFFQISVSE 18 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (395)
||+||+.++||+++++.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 44444456666666654
No 8
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=29.28 E-value=6.1e+02 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.8
Q ss_pred CccceeeEEECCCCceEEEecceeec
Q 016100 165 KLTHFYTFILRPDASYSILIDNRERD 190 (395)
Q Consensus 165 ~ltHlYTLIl~pdntyei~IDg~~~~ 190 (395)
.--|.|++.=.|+ ....+|||+++.
T Consensus 141 ~dFHtYsI~Wtp~-~I~wyVDG~~iR 165 (291)
T PLN03161 141 ADFHNYTIHWNPS-EVVWYVDGTPIR 165 (291)
T ss_pred cCcEEEEEEEchh-hEEEEECCEEEE
Confidence 3459999999887 568999999986
No 9
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=28.22 E-value=4.1e+02 Score=23.31 Aligned_cols=26 Identities=0% Similarity=0.102 Sum_probs=18.0
Q ss_pred CccceeeEEECCCCceEEEecceeecC
Q 016100 165 KLTHFYTFILRPDASYSILIDNRERDS 191 (395)
Q Consensus 165 ~ltHlYTLIl~pdntyei~IDg~~~~~ 191 (395)
.--|-+++++. .+++.+.|||+.+..
T Consensus 127 ~~W~~~~I~~~-g~~i~v~vnG~~v~~ 152 (185)
T PF06439_consen 127 GEWNTVRIVVK-GNRITVWVNGKPVAD 152 (185)
T ss_dssp TSEEEEEEEEE-TTEEEEEETTEEEEE
T ss_pred CceEEEEEEEE-CCEEEEEECCEEEEE
Confidence 34455555554 568999999998754
No 10
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.38 E-value=75 Score=25.15 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=16.9
Q ss_pred eeEEECCCCceEEEecceeecC
Q 016100 170 YTFILRPDASYSILIDNRERDS 191 (395)
Q Consensus 170 YTLIl~pdntyei~IDg~~~~~ 191 (395)
.+|.....+.|||.+||+.+-+
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 4566677899999999998864
Done!