BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016102
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
Oxidase Reveals The Structural Basis Of Hereditary
Coproporphyria
Length = 346
Score = 346 bits (887), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/310 (52%), Positives = 208/310 (67%), Gaps = 7/310 (2%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNV 148
++ + E +I + Q VCQA+ + DGG F D W R GGGGIS VLQDG ++EKAGV++
Sbjct: 40 MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSI 99
Query: 149 SVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206
SVV+G + E K G +PF A G+SSV+HPKNP APT+HFNYRYFE +
Sbjct: 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE 159
Query: 207 APKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYF 266
+QWWFGGG DLTP Y+ +ED HFH T K ACD+ P YP+FKKWCDDYF
Sbjct: 160 EADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYF 215
Query: 267 YIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326
+I H FFDDL+ +E + F CA +V+P+YIP+++K D FT Q K
Sbjct: 216 FIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKL 275
Query: 327 WQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNPKEGSEEWKLL 385
WQQLRRGRYVEFNL+YDRGT FGL T G RIESIL+SLPLTARWEY H+P E S+E ++L
Sbjct: 276 WQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEIL 335
Query: 386 DACINPKEWI 395
+ +P++W+
Sbjct: 336 EVLRHPRDWV 345
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TKL|B Chain B, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TLB|A Chain A, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|D Chain D, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|Q Chain Q, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|S Chain S, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|U Chain U, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|W Chain W, Yeast Coproporphyrinogen Oxidase
Length = 326
Score = 310 bits (795), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 154/320 (48%), Positives = 199/320 (62%), Gaps = 17/320 (5%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 10 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 68
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 69 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 128
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 129 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 185
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 186 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 245
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNP 375
D P+T + + WQ +RRGRYVEFNL+YDRGT FGL+T G R+ESIL+SLP A W Y+H+P
Sbjct: 246 DMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNHHP 305
Query: 376 KEGSEEWKLLDACINPKEWI 395
GS E KLL+ P+EW+
Sbjct: 306 APGSREAKLLEVTTKPREWV 325
>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase
pdb|1TXN|B Chain B, Crystal Structure Of Coproporphyrinogen Iii Oxidase
Length = 328
Score = 307 bits (786), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 155/320 (48%), Positives = 199/320 (62%), Gaps = 17/320 (5%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 12 IRQQXEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSXVIQDGTTFEKGGVN 70
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 71 VSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVKFFACGLSXVIHPVNPHAPTT 130
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 131 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 187
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 188 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKXVEDCFDAFLPSYLTIVKRRK 247
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHNP 375
D P+T + + WQ +RRGRYVEFNL+YDRGT FGL+T G R+ESIL SLP A W Y+H+P
Sbjct: 248 DXPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILXSLPEHASWLYNHHP 307
Query: 376 KEGSEEWKLLDACINPKEWI 395
GS E KLL+ P+EW+
Sbjct: 308 APGSREAKLLEVTTKPREWV 327
>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
pdb|3EJO|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
Length = 310
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/295 (45%), Positives = 172/295 (58%), Gaps = 9/295 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG P
Sbjct: 25 QDDICEALEAEDGQATFMEDKWTREGGGGGRTRVMVNGAVIEKGGVNFSHVYGKGLPGSS 84
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 85 TERHPDMTG-----CNFQAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 135
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED ++FH + C F Y RFK WCD+YF+I +
Sbjct: 136 GGGFDLTPYYAVEEDCRYFHQVAQDLCKPFGADVYTRFKVWCDEYFFIPYRNEARGIGGL 195
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F I AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 196 FFDDLNEWPFEKCFEFVQAVGKGYIDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 255
Query: 341 VYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
V DRGT FGL++GGR ESIL+SLP ARW YD P+ G+ E +L + + ++W+
Sbjct: 256 VIDRGTKFGLQSGGRTESILISLPPRARWGYDWQPEPGTPEARLTEYFLMKRQWV 310
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/298 (45%), Positives = 174/298 (58%), Gaps = 15/298 (5%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLP--- 80
Query: 161 XXXXXXXSDEKPGPIP---FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ 217
S E+ I F A G+S V+HPKNP PT H N R F + P
Sbjct: 81 -----MSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----V 131
Query: 218 WWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXX 277
WWFGGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 132 WWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGI 191
Query: 278 XXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVE 337
FFDDLN++ E F + AYIPI+ +RK+TP+T+Q +Q+ RRGRY E
Sbjct: 192 GGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAE 251
Query: 338 FNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
FNLV DRGT FGL++GGR ESIL+SLP ARW Y+ P+ G+ E +L + + ++W+
Sbjct: 252 FNLVIDRGTKFGLQSGGRTESILISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV 309
>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
pdb|3E8J|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
Length = 306
Score = 250 bits (639), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 174/302 (57%), Gaps = 9/302 (2%)
Query: 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYG 153
++ + QD +C AIE D F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG
Sbjct: 14 KEFLLKLQDDICHAIEAEDEQATFMEDKWTREGGGGGRTRVIANGAVIEKGGVNFSHVYG 73
Query: 154 VMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPG 213
P + + A G+S V+HPKNP PT H N R F + P
Sbjct: 74 KGLPGSSTERHPDMAG-----CNYQAMGVSLVIHPKNPHVPTSHANVRLFVAEKEGKEP- 127
Query: 214 APRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXX 273
WWFGGG DLTP Y EED +FH + C F Y RFK WCD+YF+I H
Sbjct: 128 ---VWWFGGGFDLTPYYAVEEDCYYFHHVAQELCRPFGADVYERFKAWCDEYFFIPHRNE 184
Query: 274 XXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRG 333
FFDDLN++ E +F I AYIPI+ +RK+TP+T+Q +Q+ RRG
Sbjct: 185 ARGIGGLFFDDLNEWPFEKCFAFMQAVGKGFIDAYIPIVNRRKNTPYTEQQVEFQEFRRG 244
Query: 334 RYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKE 393
RY EFNLV DRGT FGL++GGR ESIL+SLP ARW Y+ +P+ G+ E +L + + K+
Sbjct: 245 RYAEFNLVIDRGTKFGLQSGGRTESILMSLPPRARWGYNWHPEPGTPEARLTEYFLTKKQ 304
Query: 394 WI 395
W+
Sbjct: 305 WV 306
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 169/295 (57%), Gaps = 9/295 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVXVDGAVIEKGGVNFSHVYGKGLPXSS 83
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 84 TERHPDIAG-----CNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 134
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 135 GGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGL 194
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 195 FFDDLNEWPFEKCFEFVQAVGKGYXDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 254
Query: 341 VYDRGTTFGLKTGGRIESILVSLPLTARWEYDHNPKEGSEEWKLLDACINPKEWI 395
V DRGT FGL++GGR ESIL+SLP ARW Y+ P+ G+ E +L + + ++W+
Sbjct: 255 VIDRGTKFGLQSGGRTESILISLPPRARWGYNWQPEPGTPEARLTEYFLTKRQWV 309
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
Length = 260
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 152/258 (58%), Gaps = 16/258 (6%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 7 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 65
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 66 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 125
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 126 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 182
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 183 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 242
Query: 317 DTPFTDQHKAWQQLRRGR 334
D P+T + + WQ +RRGR
Sbjct: 243 DMPYTKEEQQWQAIRRGR 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,684,057
Number of Sequences: 62578
Number of extensions: 542094
Number of successful extensions: 970
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 939
Number of HSP's gapped (non-prelim): 8
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)